Citrus Sinensis ID: 038801
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 662 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7R4 | 658 | Pentatricopeptide repeat- | yes | no | 0.947 | 0.952 | 0.677 | 0.0 | |
| Q9CAA5 | 619 | Pentatricopeptide repeat- | no | no | 0.919 | 0.983 | 0.615 | 0.0 | |
| Q9SA60 | 793 | Pentatricopeptide repeat- | no | no | 0.495 | 0.413 | 0.372 | 9e-61 | |
| Q9SF38 | 778 | Pentatricopeptide repeat- | no | no | 0.495 | 0.421 | 0.291 | 2e-40 | |
| B3H672 | 674 | Pentatricopeptide repeat- | no | no | 0.830 | 0.816 | 0.209 | 1e-20 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.567 | 0.394 | 0.242 | 9e-20 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.490 | 0.435 | 0.242 | 3e-19 | |
| Q9ZVX5 | 743 | Pentatricopeptide repeat- | no | no | 0.484 | 0.432 | 0.239 | 3e-19 | |
| Q9SI78 | 485 | Pentatricopeptide repeat- | no | no | 0.513 | 0.701 | 0.255 | 3e-19 | |
| P0C7Q9 | 718 | Pentatricopeptide repeat- | no | no | 0.504 | 0.465 | 0.281 | 6e-19 |
| >sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/639 (67%), Positives = 525/639 (82%), Gaps = 12/639 (1%)
Query: 30 LYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLHKSLLTNNTDEAWK 89
LYSFL+PS+FS K + P SP Q + TLT D +S E+ LH SL + TDEAWK
Sbjct: 24 LYSFLKPSLFS--HKPITLSPSLSPPQNPK--TLTPDQKSSFESTLHDSLNAHYTDEAWK 79
Query: 90 SFKSLTANSLFPSKPVTNSLIAHLSSLQDN-----HNLKRAFASVVYVIEKNPKLLDFQT 144
+F+SLTA S P K + NSLI HLS ++ + H LKRAFAS YVIEK+P LL+F+T
Sbjct: 80 AFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKDPILLEFET 139
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204
V TLL SM+ A A PA ALVKCMFKNRYF+PF+LWG ++DICR+N + FLKVF+E
Sbjct: 140 VRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDLWGHLVIDICRENGSLAPFLKVFKES 199
Query: 205 CRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY 264
CRI++DE L+FMKP++ A NAALE CC ++S++DAE VIE+M+VLGV+P+E SFGFLAY
Sbjct: 200 CRISVDEKLEFMKPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAY 259
Query: 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME 324
LYA KGL+EKI ELE+LM+ FGF+S+ + YS++ISGYVK G+L+S S IL L G E
Sbjct: 260 LYARKGLREKISELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGG-E 318
Query: 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS 384
+S FS ETYCE+VKGF+++ +VK LA +I+EAQKLE S + VD SVGFGII+ACVNLG S
Sbjct: 319 ESSFSVETYCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFS 378
Query: 385 DKAHSILDEMNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443
DKAHSIL+EM A G SVG+GVYVP LKAYCKE+RTAEATQLV +ISSSGLQLDV +A
Sbjct: 379 DKAHSILEEMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNA 438
Query: 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503
LIEAS+T+QDF SAF+LFRDMRE R+ DLKGSYLTIMTGL+EN RPELMAAFLDEVVEDP
Sbjct: 439 LIEASMTNQDFISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDP 498
Query: 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
RVEV +HDWNSIIHAFCK+GRLEDA+RT RRM+FL++EPN+QTYLSLINGYV+ E+YF+V
Sbjct: 499 RVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNV 558
Query: 564 LMMWHEIKRKIST-DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622
L++W+EIK KIS+ + +K + +H LVDAFLYALVKGGFFDA MQVVEKSQEMK+FVDKW
Sbjct: 559 LLLWNEIKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKW 618
Query: 623 KYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661
+YKQAFME HKKL++ KLRKRN+KKME+L+AFKNWAGLN
Sbjct: 619 RYKQAFMETHKKLRLPKLRKRNYKKMESLVAFKNWAGLN 657
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980, mitochondrial OS=Arabidopsis thaliana GN=At1g68980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/626 (61%), Positives = 468/626 (74%), Gaps = 17/626 (2%)
Query: 43 RKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPS 102
RK+L P +TLT +S E+ LH SL+T++TD+AWK F+S A S P
Sbjct: 3 RKTLTLISLRRPFSSIPSKTLTPHQKSSFESTLHHSLITHDTDQAWKVFRSFAAASSLPD 62
Query: 103 KPVTNSLIAHLSSLQDN-------HNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNA 155
K + NSLI HLSS + H LKRAF S YVIEK+P LL+F+TV T+L SM+ A
Sbjct: 63 KRLLNSLITHLSSFHNTDQNTSLRHRLKRAFVSTTYVIEKDPILLEFETVRTVLESMKLA 122
Query: 156 NTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDF 215
+ PA ALV+CMFKNRYF+PF+LWG L+D+CR+N + AFLKVF E CRIA+DE LDF
Sbjct: 123 KASGPALALVECMFKNRYFVPFDLWGDLLIDVCRENGSLAAFLKVFRESCRIAVDEKLDF 182
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
MKP++ A NAALE CC ++S++DAE +IE+M VLGV+P+E SFGFLAYLYA KGL+EKI
Sbjct: 183 MKPDLVASNAALEACCRQMESLADAENLIESMDVLGVKPDELSFGFLAYLYARKGLREKI 242
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
ELE LM+ GF+S+ + YSS+ISGYVK G+L+SAS IL L G E S FS+ETYCE
Sbjct: 243 SELEDLMDGLGFASRRILYSSMISGYVKSGDLDSASDVILCSLKGVG-EASSFSEETYCE 301
Query: 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMN 395
+V+GF+++ +V+ LA LIIEAQKLE V SVGFGI++ACV LG S K SILDE+N
Sbjct: 302 LVRGFIESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGK--SILDELN 359
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455
A G S G+GVYVP LKAYCKE RT+EATQLV +ISSSGLQLDV Y+ +IEAS+T DF
Sbjct: 360 AQGGSGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEASMTKHDFL 419
Query: 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515
SA +LFRDMRE R+ DLK YLTIMTGL+EN RPELMA F++EV+EDPRVEVK+HDWNSI
Sbjct: 420 SALTLFRDMRETRVADLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSI 479
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575
IHAFCK+GRL DAK T RRM FLQ+EPN+QTYLSLINGYV+ E+YF V+++W E K
Sbjct: 480 IHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSCEKYFEVVVIWKEFK---- 535
Query: 576 TDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKL 635
K K EH L DAFL ALVKGGFF +QV+EK QEMK+FVDKW+YK FME K L
Sbjct: 536 ---DKKAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFMETQKNL 592
Query: 636 KVAKLRKRNFKKMEALIAFKNWAGLN 661
++ KLRKR KK+E L AFKNWA +
Sbjct: 593 RLPKLRKRKMKKIEFLDAFKNWARIT 618
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 201/341 (58%), Gaps = 13/341 (3%)
Query: 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388
++E Y ++ K FL++G +K LA +++A+ E S + D S+ +I+AC++LG+ D+AH
Sbjct: 458 TEEIYVKLAKAFLESGKMKELAKFLLKAEH-EDSPVSSDNSMLINVINACISLGMLDQAH 516
Query: 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448
+LDEM G G VY LKAYC ++T E T L+ D +G+QLD Y+ALI++
Sbjct: 517 DLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQ 576
Query: 449 ITSQDFQSAFSLFRDMREARIYDLKGS---YLTIMTGLMENHRPELMAAFLDEVVEDPRV 505
+ D A ++F++M+EA+I L+G + ++ G N LM+ L E+ E +
Sbjct: 577 VIQNDTHGALNVFKEMKEAKI--LRGGNQKFEKLLKGCEGNAEAGLMSKLLREIREVQSL 634
Query: 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT-AEQYFSVL 564
+ HDWN++IH F K G ++DA++ L+RM L PN QT+ S++ GY +Y V
Sbjct: 635 DAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSMVTGYAAIGSKYTEVT 694
Query: 565 MMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
+W E+K + +KF+ L+DA LY V+GGFF +VVE ++ +FVDK+KY
Sbjct: 695 ELWGEMKSIAAATS--SMKFDQELLDAVLYTFVRGGFFSRANEVVEMMEKKNMFVDKYKY 752
Query: 625 KQAFMENHK---KLKVAKLRKRN-FKKMEALIAFKNWAGLN 661
+ F++ HK K K K++ + KK EA + FK W GL+
Sbjct: 753 RMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGLS 793
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 170/346 (49%), Gaps = 18/346 (5%)
Query: 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
Y ++KG+++NG V A ++ ++ + D ++SA VN GL D+A +L
Sbjct: 417 YTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLA 476
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS-SSGLQLDVGNYDALIEASITS 451
EM G Y LK YCK+ + A L+ +++ +G++ DV +Y+ +I+ I
Sbjct: 477 EMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILI 536
Query: 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511
D A + F +MR I K SY T+M + +P+L DE++ DPRV+V
Sbjct: 537 DDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIA 596
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571
WN ++ +C+ G +EDA+R + RM F PN TY SL NG A + L++W EIK
Sbjct: 597 WNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIK 656
Query: 572 RKISTDGQKG------------IKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV 619
+ + ++ +K + L+D V+ FF ++++ +E +
Sbjct: 657 ERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPP 716
Query: 620 DKWKYKQAFMENHKKLKVAKLRK-----RNFKKMEALIAFKNWAGL 660
+K KYK+ ++E H ++ +K R ++ A AFK W GL
Sbjct: 717 NKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
|
Involved in the processing of polycistronic chloroplast psbB-psbT-psbH-petB-petD transcript. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 126/602 (20%), Positives = 257/602 (42%), Gaps = 52/602 (8%)
Query: 71 LETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVV 130
L+ L +L + D+AW FK FP + N + LS D L +A
Sbjct: 57 LKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFVTVLSYSSDAGWLCKASDLTR 116
Query: 131 YVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRK 190
+++NP +L + L S+ A A ++++ M + Y + ++ ++ + +
Sbjct: 117 LALKQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLEKGYVLTSDVLRLVVMHMVKT 176
Query: 191 NSNFVAFLKVFEECCRIALDENL--------DFMKPNIYACNAALEGCCYGLQSVSDAEK 242
+ C ++ N+ + +KP+ N L G C ++
Sbjct: 177 EIGTCLASNYLVQVCDRFVEFNVGKRNSSPGNVVKPDTVLFNLVL-GSCVRFGFSLKGQE 235
Query: 243 VIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG-FSSQMV-----FYSS 296
+IE M+ + V + S ++ +Y + G+++ EL G Q++ F+ +
Sbjct: 236 LIELMAKVDVVADAYSIVIMSCIYEMNGMRD---ELRKFKEHIGQVPPQLLGHYQHFFDN 292
Query: 297 LISGYVKLGNLESASRTIL-LCLGG--GNMEQSDFSKETYCEVVKGFLQNGNVKGLANLI 353
L+S K ++ SA R L +C ++E F E L G+ + L
Sbjct: 293 LLSLEFKFDDIGSAGRLALDMCKSKVLVSVENLGFDSEK-----PRVLPVGSHHIRSGLK 347
Query: 354 IEAQKLEPSGIVVDRSVGFGIISACVN-----LGLSDKA----------HSILDEMNACG 398
I + P + D S+G + VN LG+++K H L E++
Sbjct: 348 IH---ISPKLLQRDSSLGVDTEATFVNYSNSKLGITNKTLAKLVYGYKRHDNLPELSKLL 404
Query: 399 CSVGLGVYVPTLKAYCKEHRTAEATQLVM-DISSSGLQLDVGNYDALIEASITSQDFQSA 457
S+G + C EA ++ D++S+G +++ Y ++ S+ ++A
Sbjct: 405 FSLGGSRLCADVIDACVAIGWLEAAHDILDDMNSAGYPMELATYRMVLSGYYKSKMLRNA 464
Query: 458 FSLFRDMREARIYDLKGSYLTIM--TGLMENHRPELMAAFLDEVVEDPRVEVKT--HDWN 513
L + M +A + + + + T ++ EL + E+ +++ + ++ N
Sbjct: 465 EVLLKQMTKAGLITDPSNEIVVSPETEEKDSENTELRDLLVQEINAGKQMKAPSMLYELN 524
Query: 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
S ++ FCKA DA T R++ ++ P Q++ LI+ Y + Y + ++W +IKR
Sbjct: 525 SSLYYFCKAKMQGDALITYRKIPKMKIPPTVQSFWILIDMYSSLGMYREITIVWGDIKRN 584
Query: 574 ISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHK 633
I++ K +K +L++ + ++GG+F+ VM+++ +E ++ D YK +++ HK
Sbjct: 585 IAS---KNLKTTQDLLEKLVVNFLRGGYFERVMELISYMKENDMYNDLTMYKNEYLKLHK 641
Query: 634 KL 635
L
Sbjct: 642 NL 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 182/429 (42%), Gaps = 53/429 (12%)
Query: 233 GLQSVSDAEK---VIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSS 289
G V+D +K V + + G P ++G L LY G K +E+ +M E G
Sbjct: 458 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 517
Query: 290 QMVFYSSLISGYVKLGNLESA-------------------SRTILLCLGGGNMEQS---- 326
+ YS +I+G+VKL + +A + I G GNM+++
Sbjct: 518 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 577
Query: 327 --------DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378
+ T+ ++ G+ ++G+++ + + G V G+I+
Sbjct: 578 KEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVF---DMMRRCGCVPTVHTFNGLINGL 634
Query: 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV 438
V +KA ILDEM G S Y ++ Y T +A + + + GL +D+
Sbjct: 635 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 694
Query: 439 GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM-AAFLD 497
Y+AL++A S QSA ++ ++M I Y ++ G R ++ AA L
Sbjct: 695 FTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWA--RRGDVWEAADLI 752
Query: 498 EVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTA 557
+ ++ V+ H + S I A KAG + A +T+ M L +PN +TY +LI G+ A
Sbjct: 753 QQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARA 812
Query: 558 EQYFSVLMMWHEIKRKISTDGQKGIKFE----HNLVDAFL--YALVKGGFFDAVMQVVEK 611
L + E+K GIK + H L+ + L ++ + + VM + ++
Sbjct: 813 SLPEKALSCYEEMK-------AMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKE 865
Query: 612 SQEMKVFVD 620
E + VD
Sbjct: 866 MVEAGLIVD 874
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 13/338 (3%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
PN+ N ++G C L+ + D K++ +M++ G+ PN S+ + +G +++
Sbjct: 238 PNVVTYNTLIDGYC-KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337
+ + MN G+S V Y++LI GY K GN A L G S TY ++
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP----SVITYTSLI 352
Query: 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397
+ GN+ + ++ G+ + ++ G ++A+ +L EMN
Sbjct: 353 HSMCKAGNMNRAMEFL---DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409
Query: 398 GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457
G S + Y + +C + +A ++ D+ GL DV +Y ++ S D A
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD--WNSI 515
+ R+M E I +Y +++ G E R + +E++ RV + + + ++
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML---RVGLPPDEFTYTAL 526
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
I+A+C G LE A + M+ P+ TY LING
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 174/418 (41%), Gaps = 97/418 (23%)
Query: 198 LKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQS--VSDAEKVIETMSVLGVRPN 255
L++F++ R+ L KPN+ CN L G S +S A +V + M +GV N
Sbjct: 151 LQIFQKMIRLKL-------KPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLN 203
Query: 256 ESSFGFLAYLYALKG-LQEKIVELESLMNEF----------------------------- 285
+F L Y L+G L++ + LE +++EF
Sbjct: 204 VQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELL 263
Query: 286 ------GFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVV 337
G V Y++L+ GY KLG+L+ A + + L M+Q++ + TY ++
Sbjct: 264 LDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVEL------MKQTNVLPDLCTYNILI 317
Query: 338 KGFLQNGNVKGLANLI--IEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMN 395
G G+++ L+ +++ KL+P + + +I C LGLS +A ++++M
Sbjct: 318 NGLCNAGSMREGLELMDAMKSLKLQPDVVTYNT-----LIDGCFELGLSLEARKLMEQME 372
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD-ISSSGLQLDVGNYDALIEASITSQDF 454
G + +LK CKE + T+ V + + G D+ Y LI+A + D
Sbjct: 373 NDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDL 432
Query: 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514
A + R+M + KG +++ T N+
Sbjct: 433 SGALEMMREMGQ------KG------------------------------IKMNTITLNT 456
Query: 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572
I+ A CK +L++A L F ++ TY +LI G+ E+ L MW E+K+
Sbjct: 457 ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKK 514
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 28/368 (7%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P++ ++ + G C G V DA ++ M +G RP+ + + GL V
Sbjct: 136 EPDVVTVSSLINGFCQG-NRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 194
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYC 334
EL M G + V Y+SL++G G A+R + +M D T+
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLM------RDMVMRDIVPNVITFT 248
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKL--EPSGIVVDRSVGF--GIISACVNLGLSDKAHSI 390
V+ F++ G EA KL E + VD V +I+ G D+A +
Sbjct: 249 AVIDVFVKEGKFS-------EAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301
Query: 391 LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT 450
LD M GC + Y + +CK R E T+L +++ GL D Y+ +I+
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 361
Query: 451 SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH 510
+ +A +F M ++R +++ +Y ++ GL N R E A L E ++ +E+
Sbjct: 362 AGRPDAAQEIFSRM-DSR-PNIR-TYSILLYGLCMNWRVE-KALVLFENMQKSEIELDIT 417
Query: 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570
+N +IH CK G +EDA R + +P+ +Y ++I+G+ Q+ +++
Sbjct: 418 TYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLY--- 474
Query: 571 KRKISTDG 578
RK+ DG
Sbjct: 475 -RKMQEDG 481
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 169/370 (45%), Gaps = 36/370 (9%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278
NIY C AL C +G + DA +++ +M+ P+ S+ L + Y G K VE
Sbjct: 347 NIYIC--AL--CDFG--RIDDARELLSSMAA----PDVVSYNTLMHGYIKMG---KFVEA 393
Query: 279 ESLMNEF---GFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE-TYC 334
L ++ +V Y++LI G + GNLE A R L Q F TY
Sbjct: 394 SLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR-----LKEEMTTQLIFPDVITYT 448
Query: 335 EVVKGFLQNGNVKGLANLIIEAQK--LEPSGIV-VDRSVGFGIISACVNLGLSDKAHSIL 391
+VKGF++NGN+ + E + ++P G R+VG + LG SDKA +
Sbjct: 449 TLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVG------ELRLGDSDKAFRLH 502
Query: 392 DEMNACGCSV-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT 450
+EM A L +Y + CK +A + I GL D Y +I +
Sbjct: 503 EEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLE 562
Query: 451 SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP-RVEVKT 509
+ F+ A +L+ +M R+Y +Y ++ G + R E + E+ + R V T
Sbjct: 563 NGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 622
Query: 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHE 569
H N++++ CKAG +++A R L +M PN +Y LI+ E++ V+ ++ E
Sbjct: 623 H--NALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKE 680
Query: 570 -IKRKISTDG 578
+ ++I DG
Sbjct: 681 MLDKEIEPDG 690
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 662 | ||||||
| 224098970 | 654 | predicted protein [Populus trichocarpa] | 0.975 | 0.987 | 0.739 | 0.0 | |
| 225423470 | 655 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 1.0 | 0.729 | 0.0 | |
| 255542030 | 650 | pentatricopeptide repeat-containing prot | 0.980 | 0.998 | 0.716 | 0.0 | |
| 297738088 | 967 | unnamed protein product [Vitis vinifera] | 0.930 | 0.637 | 0.717 | 0.0 | |
| 449434724 | 656 | PREDICTED: pentatricopeptide repeat-cont | 0.960 | 0.969 | 0.685 | 0.0 | |
| 357487645 | 664 | Pentatricopeptide repeat-containing prot | 0.971 | 0.968 | 0.692 | 0.0 | |
| 357487751 | 660 | Pentatricopeptide repeat-containing prot | 0.966 | 0.969 | 0.691 | 0.0 | |
| 297841661 | 1042 | hypothetical protein ARALYDRAFT_339164 [ | 0.942 | 0.598 | 0.682 | 0.0 | |
| 30697827 | 658 | pentatricopeptide repeat-containing prot | 0.947 | 0.952 | 0.677 | 0.0 | |
| 12325092 | 860 | unknown protein; 45065-49536 [Arabidopsi | 0.944 | 0.726 | 0.675 | 0.0 |
| >gi|224098970|ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|222851159|gb|EEE88706.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/657 (73%), Positives = 564/657 (85%), Gaps = 11/657 (1%)
Query: 9 FMLIRKKFFCSSSSTSPETPSLYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQQTLTQDNI 68
F L+R++ F ST+PE P+LYSFLQP+IF+LK+ P + T +Q + LTQD+I
Sbjct: 6 FPLLRRRSF----STTPEIPNLYSFLQPTIFALKKTPPSTTNPATTTNRQTPKILTQDHI 61
Query: 69 TSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFAS 128
T+LE+ LHKSL+TNNT+EAW SFKSLT+NS FPSK +TNSLI HLSSL D NLKRAFAS
Sbjct: 62 TNLESTLHKSLITNNTNEAWASFKSLTSNSAFPSKSLTNSLITHLSSLNDTINLKRAFAS 121
Query: 129 VVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDIC 188
+VYVIEKNPK LDF+TV LGSM ANTAAPAFAL+KCMFKNR+FMPF LWG L++I
Sbjct: 122 IVYVIEKNPKSLDFETVQLFLGSMVRANTAAPAFALIKCMFKNRFFMPFRLWGDILIEIS 181
Query: 189 RKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMS 248
RKN +AFLKVFEE CRIA+DE LDFMKP++ ACN ALEGCC L+SVS+AEKVIETMS
Sbjct: 182 RKNDKVIAFLKVFEESCRIAIDEKLDFMKPDMDACNVALEGCCCELESVSEAEKVIETMS 241
Query: 249 VLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLE 308
VLG++P+E SFGFLAYLYALKG Q+KI+EL LM+ FGFS++ +F+S LI GYVK G+ E
Sbjct: 242 VLGIKPDELSFGFLAYLYALKGFQDKIIELNGLMSGFGFSNKKLFFSYLIRGYVKSGSFE 301
Query: 309 SASRTILLCL---GGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIV 365
+ S TIL L GG ++ +FS+ETYC+VVKGF+++G +KGLANLIIEAQKLE + I
Sbjct: 302 AVSETILRSLREQGGLDL---NFSEETYCQVVKGFMKDGGIKGLANLIIEAQKLESATIA 358
Query: 366 VDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQL 425
D+S GFGIISACVNL LSDKAHSI+DEM+A G SVGLGV++P LKAYCKE+RTAEATQL
Sbjct: 359 ADKSTGFGIISACVNLRLSDKAHSIVDEMDAQGGSVGLGVFLPILKAYCKEYRTAEATQL 418
Query: 426 VMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485
VMDIS+ GLQLD G+YDALIEAS+TSQDFQSAF+LFRDMRE I +LKGSYLTIMTGLME
Sbjct: 419 VMDISNKGLQLDEGSYDALIEASMTSQDFQSAFTLFRDMREG-IAELKGSYLTIMTGLME 477
Query: 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ 545
RPELMAAFLDE+VEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT RRM FLQFEPNDQ
Sbjct: 478 KQRPELMAAFLDEIVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTFRRMTFLQFEPNDQ 537
Query: 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAV 605
TYLSLINGYVTAE+YF VLM+W+E+KRK+S D +KGIKF+ +LVDAFLYA+VKGGFFDAV
Sbjct: 538 TYLSLINGYVTAEKYFGVLMLWNEVKRKVSPDKEKGIKFDQSLVDAFLYAMVKGGFFDAV 597
Query: 606 MQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLNA 662
MQVVEKSQEMK+FVDKW+YKQAFME+HKKLKV+KLRKRNF+KMEALIAFKNW GLN
Sbjct: 598 MQVVEKSQEMKIFVDKWRYKQAFMESHKKLKVSKLRKRNFRKMEALIAFKNWVGLNT 654
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423470|ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1005 bits (2598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/662 (72%), Positives = 556/662 (83%), Gaps = 7/662 (1%)
Query: 1 MWWRKEASFMLIRKKFFCSSSSTSPETPSLYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQ 60
MW R A +++F SS++ E P+LYSFLQPS+FSLK P+ + + Q
Sbjct: 1 MWRRAVAVRFAPQRRF---SSTSESEFPTLYSFLQPSLFSLKPIPSAPRSPHPTSPKPLQ 57
Query: 61 QTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNH 120
+D LE+ LH SL TNNTDEAWKSFK+LT NS FPSK + NSLIAHL+SL D +
Sbjct: 58 SPAPED----LESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLY 113
Query: 121 NLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELW 180
NLKRAFAS V+++EKNP LLDF TV TLLGSM +ANTAAPAFAL+ CMFKNRYFMPF +W
Sbjct: 114 NLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMW 173
Query: 181 GGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDA 240
GG +V+I R+N +FVAFL+VF E CRIA+DE L+ MKP++ ACN ALEGC L+SVS+A
Sbjct: 174 GGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVALEGCSQDLESVSEA 233
Query: 241 EKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISG 300
EKV+E MSVLG++P+ESSFGFLAYLYALKGL+EKIVELE LM FGFSS+ V YS LI+
Sbjct: 234 EKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFGFSSKKVIYSYLINA 293
Query: 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLE 360
YVK GNLE SRTI L + + +FS+ETYCEVVKGFLQNG++K LA+LIIE QKLE
Sbjct: 294 YVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSIKDLASLIIETQKLE 353
Query: 361 PSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420
PS I VDRS+G+GIISACV+LG DKAHSILDEMN G SVGLGVYV LKA+CKEHRTA
Sbjct: 354 PSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEHRTA 413
Query: 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480
EA QLV +ISS GLQLD G+YDALIEAS++SQDFQSAFSLFRDMREAR+ D+KGSYLT+M
Sbjct: 414 EAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYLTMM 473
Query: 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540
TGL ENHRPELMAAFLDE+VEDPRVEV THDWNSIIHAFCK GRLEDA+RT RRMIFLQF
Sbjct: 474 TGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIFLQF 533
Query: 541 EPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGG 600
EPNDQTYLSLINGY +AE+YFSVLM+W+E+KR+IS DG+KG+KF+HNLVDAFLYALVKGG
Sbjct: 534 EPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGVKFDHNLVDAFLYALVKGG 593
Query: 601 FFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGL 660
FFDAVMQVVEKSQEMK+FVDKW+YKQAFME HKKLKVAK+RKRNF+KMEALIAFKNWAGL
Sbjct: 594 FFDAVMQVVEKSQEMKIFVDKWRYKQAFMEVHKKLKVAKVRKRNFRKMEALIAFKNWAGL 653
Query: 661 NA 662
NA
Sbjct: 654 NA 655
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542030|ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223549259|gb|EEF50748.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/663 (71%), Positives = 555/663 (83%), Gaps = 14/663 (2%)
Query: 1 MWWRKEASFMLIRKKFFCSSSSTSPETPSLYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQ 60
MW RK +F+ R + T +LYSFLQP+IF+LK+ + + T
Sbjct: 1 MWRRKAINFLPNR----------TFSTSTLYSFLQPTIFTLKKPTTDP---TNTTPPPTL 47
Query: 61 QTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANS-LFPSKPVTNSLIAHLSSLQDN 119
Q+L D++ +LE+ +H SLLTN+TD+AWKSFK LT+NS FPSK + NSLI HLSSLQD
Sbjct: 48 QSLNLDHVATLESTIHNSLLTNDTDQAWKSFKFLTSNSSYFPSKSLANSLITHLSSLQDT 107
Query: 120 HNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFEL 179
NLKRAFASV++ +EKNP+ LDF+TV ++L SM+ AN+AAPAFALVKCMFK+RYFMPF L
Sbjct: 108 LNLKRAFASVIFFMEKNPQSLDFETVQSVLESMKFANSAAPAFALVKCMFKHRYFMPFHL 167
Query: 180 WGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSD 239
WGG + I +KN FVAFLKVFEE RIA+DE LDFMKP++ ACN ALE CC ++SVSD
Sbjct: 168 WGGLIGHISKKNGMFVAFLKVFEESYRIAVDEKLDFMKPDLGACNLALECCCEEIESVSD 227
Query: 240 AEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299
A+ VIE MSVLG++P+E SFGFLAYLYALKGLQ++IVEL+SLM F ++ +FYS+LI
Sbjct: 228 ADNVIEIMSVLGIKPDEMSFGFLAYLYALKGLQDRIVELKSLMEGFSVLNKRLFYSNLIR 287
Query: 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKL 359
GYVK GNLES S TI+ L + + + ++ETYCEVVKGFL++G++KGLANLIIEA+KL
Sbjct: 288 GYVKSGNLESVSATIICSLREEDEKNYNINEETYCEVVKGFLKDGSLKGLANLIIEARKL 347
Query: 360 EPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419
EP I +D+S+ FG+I+ACVNLGLSDKAHSILDEM+A G SVG GVYVP LKAYCKE RT
Sbjct: 348 EPDSIEIDKSISFGVINACVNLGLSDKAHSILDEMDAKGGSVGFGVYVPILKAYCKEGRT 407
Query: 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479
AEATQLVM+IS+ GLQLD G+YDALIEAS+TSQDFQSAF+LFRDMRE+R DLKGSYLTI
Sbjct: 408 AEATQLVMEISNLGLQLDAGSYDALIEASMTSQDFQSAFTLFRDMRESRSPDLKGSYLTI 467
Query: 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539
MTGLMENHRPELMAAFLDEVVEDPR+EVKTHDWNSIIHAFCKAGRLEDAKRT RRMIFLQ
Sbjct: 468 MTGLMENHRPELMAAFLDEVVEDPRIEVKTHDWNSIIHAFCKAGRLEDAKRTFRRMIFLQ 527
Query: 540 FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG 599
FEPNDQTYLSLINGYVTAE+YFSVLM+W EIKR++S D +K KF+ NLVDAFLYALVKG
Sbjct: 528 FEPNDQTYLSLINGYVTAEKYFSVLMLWSEIKRRVSNDKEKSFKFDQNLVDAFLYALVKG 587
Query: 600 GFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAG 659
GFFDAVMQVVEKSQEMK+FVDKWKYKQAFME HKKLKV+KLRKRNF+KMEALIAFKNWAG
Sbjct: 588 GFFDAVMQVVEKSQEMKIFVDKWKYKQAFMETHKKLKVSKLRKRNFRKMEALIAFKNWAG 647
Query: 660 LNA 662
LNA
Sbjct: 648 LNA 650
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738088|emb|CBI27289.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/623 (71%), Positives = 518/623 (83%), Gaps = 7/623 (1%)
Query: 1 MWWRKEASFMLIRKKFFCSSSSTSPETPSLYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQ 60
MW R A +++F SS++ E P+LYSFLQPS+FSLK P+ + + Q
Sbjct: 1 MWRRAVAVRFAPQRRF---SSTSESEFPTLYSFLQPSLFSLKPIPSAPRSPHPTSPKPLQ 57
Query: 61 QTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNH 120
+D LE+ LH SL TNNTDEAWKSFK+LT NS FPSK + NSLIAHL+SL D +
Sbjct: 58 SPAPED----LESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLY 113
Query: 121 NLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELW 180
NLKRAFAS V+++EKNP LLDF TV TLLGSM +ANTAAPAFAL+ CMFKNRYFMPF +W
Sbjct: 114 NLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMW 173
Query: 181 GGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDA 240
GG +V+I R+N +FVAFL+VF E CRIA+DE L+ MKP++ ACN ALEGC L+SVS+A
Sbjct: 174 GGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVALEGCSQDLESVSEA 233
Query: 241 EKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISG 300
EKV+E MSVLG++P+ESSFGFLAYLYALKGL+EKIVELE LM FGFSS+ V YS LI+
Sbjct: 234 EKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFGFSSKKVIYSYLINA 293
Query: 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLE 360
YVK GNLE SRTI L + + +FS+ETYCEVVKGFLQNG++K LA+LIIE QKLE
Sbjct: 294 YVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSIKDLASLIIETQKLE 353
Query: 361 PSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420
PS I VDRS+G+GIISACV+LG DKAHSILDEMN G SVGLGVYV LKA+CKEHRTA
Sbjct: 354 PSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEHRTA 413
Query: 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480
EA QLV +ISS GLQLD G+YDALIEAS++SQDFQSAFSLFRDMREAR+ D+KGSYLT+M
Sbjct: 414 EAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYLTMM 473
Query: 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540
TGL ENHRPELMAAFLDE+VEDPRVEV THDWNSIIHAFCK GRLEDA+RT RRMIFLQF
Sbjct: 474 TGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIFLQF 533
Query: 541 EPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGG 600
EPNDQTYLSLINGY +AE+YFSVLM+W+E+KR+IS DG+KG+KF+HNLVDAFLYALVKGG
Sbjct: 534 EPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGVKFDHNLVDAFLYALVKGG 593
Query: 601 FFDAVMQVVEKSQEMKVFVDKWK 623
FFDAVMQVVEKSQEMK+FVDKW+
Sbjct: 594 FFDAVMQVVEKSQEMKIFVDKWR 616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434724|ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like [Cucumis sativus] gi|449517162|ref|XP_004165615.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/651 (68%), Positives = 533/651 (81%), Gaps = 15/651 (2%)
Query: 20 SSSTSPETP-SLYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQ-------QTLTQDNITSL 71
S S+ PE P SLYSFLQPS+F+ KR P SP+Q Q LT D + +
Sbjct: 13 SFSSVPENPPSLYSFLQPSLFARKRT------PFSPSQDSTDLRQDPTPQNLTPDGVAVV 66
Query: 72 ETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVY 131
ET LHKSLLT++TDEAWKSFK LT +S FPSK +TNSLIAHLSS+ D HNLKRAFASVV+
Sbjct: 67 ETALHKSLLTSDTDEAWKSFKLLTRSSAFPSKSLTNSLIAHLSSIGDVHNLKRAFASVVF 126
Query: 132 VIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKN 191
VIEK P+LLDF +V LL SM+ ANTAAPA +L+KCMFKNR F+PF +WG LVDICR++
Sbjct: 127 VIEKKPELLDFGSVKALLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGKELVDICRQS 186
Query: 192 SNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLG 251
+ + FL+VFEE CRIALDE LDF+KP++ ACNAALEGCC+ L+SV+DAEKVIETMS+L
Sbjct: 187 GSLIPFLRVFEENCRIALDERLDFLKPDLIACNAALEGCCHELESVTDAEKVIETMSLLY 246
Query: 252 VRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESAS 311
+RP+E SFG LAYLYALKGL +KI+ELE LM FGF+ + +F+S+L+SGYV N + S
Sbjct: 247 LRPDEVSFGALAYLYALKGLDQKIIELEVLMGSFGFTCKDLFFSNLVSGYVNASNFAAVS 306
Query: 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG 371
+T+L L F ++TY E+VKGF+Q+GN+K L+ LII+AQ LE S VD S+G
Sbjct: 307 KTMLRSLKDECGSHVHFGEKTYLEMVKGFIQSGNLKELSALIIDAQNLESSS-AVDGSIG 365
Query: 372 FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS 431
FGII+ACVN+G DKA ILDEMN+ G S+GLGVY+P LKAY KEHRTA ATQL+MDISS
Sbjct: 366 FGIINACVNIGWLDKAQYILDEMNSQGVSLGLGVYLPILKAYRKEHRTAAATQLIMDISS 425
Query: 432 SGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491
SG+QLD NYDALIEAS+++QDFQSAF+LFR MRE R D K SYLTIMTGLMENHRPEL
Sbjct: 426 SGIQLDAENYDALIEASMSNQDFQSAFTLFRSMRETRKSDTKASYLTIMTGLMENHRPEL 485
Query: 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLI 551
MAAFLDE+VEDP VEV THDWNSIIHAFCKAGRLEDA+RT RRM FLQFEPN+QT+LSLI
Sbjct: 486 MAAFLDEIVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTYRRMKFLQFEPNEQTFLSLI 545
Query: 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611
NGYV+AE+YF VLM+W+E+K K++ +G+ GIK ++NLVDAFLYALVKGGFFDAVMQVVEK
Sbjct: 546 NGYVSAERYFCVLMLWNELKWKVTPNGESGIKLDNNLVDAFLYALVKGGFFDAVMQVVEK 605
Query: 612 SQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLNA 662
+++ K+F+DKWKYKQAFME HKKLKVAKLR+RN+KKME+LIAFKNWAGLNA
Sbjct: 606 TKDTKIFIDKWKYKQAFMETHKKLKVAKLRRRNYKKMESLIAFKNWAGLNA 656
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487645|ref|XP_003614110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355515445|gb|AES97068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/650 (69%), Positives = 532/650 (81%), Gaps = 7/650 (1%)
Query: 20 SSSTSPETPSLYSFLQPSIFSLK---RKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLH 76
+ S S ETPSLYSFLQPS+F +P N PT Q +LT +T+L+T LH
Sbjct: 15 TRSFSSETPSLYSFLQPSLFKFNLHNDNDNDNEPHNLPTSPPQSLSLTHQQLTTLQTTLH 74
Query: 77 KSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDN-HNLKRAFASVVYVIEK 135
KSL+T+ TDEAWKSFK+LT + FP KP+TNSL+ HLSSL DN NLKRAFAS +++I+K
Sbjct: 75 KSLITSQTDEAWKSFKTLTTHHSFPPKPLTNSLLTHLSSLPDNILNLKRAFASTLFLIQK 134
Query: 136 NPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFV 195
+P LL+F T+H +L S+++ANTA PAF+LV+ MFK R+F+PF LWGG LVDI R N N
Sbjct: 135 HPNLLEFNTIHAILLSIKSANTAPPAFSLVRSMFKYRFFIPFHLWGGVLVDIARNNDNLA 194
Query: 196 AFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPN 255
AFL +FEE CR+A DE L+FM P++ +CNAALE CC+ LQSV+DA +V+E MS LGV+P+
Sbjct: 195 AFLPLFEENCRVAFDEKLEFMIPDVASCNAALEACCFCLQSVTDANRVVEIMSKLGVKPD 254
Query: 256 ESSFGFLAYLYALKGLQEKIVELESLMNEFGFS-SQMVFYSSLISGYVKLGNLESASRTI 314
SFGFLAYLYALKGLQ+KI EL+ LM FG+S + FYS+LISGYVK NL S TI
Sbjct: 255 VFSFGFLAYLYALKGLQDKIDELKVLMVGFGYSKNNKCFYSNLISGYVKSANLVSVESTI 314
Query: 315 LLCLGGGNMEQS--DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF 372
L L + E F ++T+C VVK +L GN+KGLANLIIEAQKLE S I VD S+GF
Sbjct: 315 LSSLNDRDDEGEVWSFDRDTFCLVVKEYLHKGNIKGLANLIIEAQKLESSNIKVDESIGF 374
Query: 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432
GI++ACV++GLSDKAH+ILDEMNA G SVGLGVYVP LKAYCKE+RTAEA+ LV +ISSS
Sbjct: 375 GIVNACVSIGLSDKAHNILDEMNALGGSVGLGVYVPILKAYCKENRTAEASLLVTEISSS 434
Query: 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492
GL+LDV YDALIE S++ QDFQS FSLFRDMR AR+ DLKGSYLTIMTGLMENHRPELM
Sbjct: 435 GLKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARVLDLKGSYLTIMTGLMENHRPELM 494
Query: 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552
AAFLDEVVEDPR+EV THDWNSIIHAFCKAGRLEDA+RT RRM FLQFEPNDQTYLSLIN
Sbjct: 495 AAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSLIN 554
Query: 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612
GYV+AE+YF V+M+W+E+KRK++ DG KGIKF+ NLVDAFLYA+VKGGFFDAVMQVVEKS
Sbjct: 555 GYVSAEKYFDVMMLWNEVKRKLAGDGPKGIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKS 614
Query: 613 QEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLNA 662
+EMK+FVDKW+YKQAFME HKKLKVA+LRK+N +KMEALIAFKNWAGLNA
Sbjct: 615 KEMKIFVDKWRYKQAFMETHKKLKVARLRKKNVRKMEALIAFKNWAGLNA 664
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487751|ref|XP_003614163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355515498|gb|AES97121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/649 (69%), Positives = 530/649 (81%), Gaps = 9/649 (1%)
Query: 20 SSSTSPETPSLYSFLQPSIF--SLKRKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLHK 77
+ S S ETPSLYSFLQPS+F +L + + P SP Q T+L+T LHK
Sbjct: 15 TRSFSSETPSLYSFLQPSLFKFNLHNDNDNDNLPTSPPQSLSLTHQQL---TTLQTTLHK 71
Query: 78 SLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDN-HNLKRAFASVVYVIEKN 136
SL+T+ TDEAWKSFK+LT + FP KP+TNSL+ HLSSL DN NLKRAFAS +++I+K+
Sbjct: 72 SLITSQTDEAWKSFKTLTTHHSFPPKPLTNSLLTHLSSLPDNILNLKRAFASTLFLIQKH 131
Query: 137 PKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVA 196
P LL+F T+H +L S+++ANTA PAF+LV+ MFK R+F+PF LWGG LVDI R N N A
Sbjct: 132 PNLLEFNTIHAILLSIKSANTAPPAFSLVRSMFKYRFFIPFHLWGGVLVDIARNNDNLAA 191
Query: 197 FLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNE 256
FL +FEE CR+A DE L+FM P++ +CNAALE CC+ LQSV+DA +V+E MS LGV+P+
Sbjct: 192 FLPLFEENCRVAFDEKLEFMIPDVASCNAALEACCFCLQSVTDANRVVEIMSKLGVKPDV 251
Query: 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFS-SQMVFYSSLISGYVKLGNLESASRTIL 315
SFGFLAYLYALKGLQ+KI EL+ LM FG+S + FYS+LISGYVK NL S TIL
Sbjct: 252 FSFGFLAYLYALKGLQDKIDELKVLMVGFGYSKNNKCFYSNLISGYVKSANLVSVESTIL 311
Query: 316 LCLGGGNMEQS--DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG 373
L + E F ++T+C VVK +L GN+KGLANLIIEAQKLE S I VD S+GFG
Sbjct: 312 SSLNDRDDEGEVWSFDRDTFCLVVKEYLHKGNIKGLANLIIEAQKLESSNIKVDESIGFG 371
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433
I++ACV++GLSDKAHSILDEMNA G SVGLGVYVP LKAYCKE+RTAEA+ LV +ISSSG
Sbjct: 372 IVNACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEASLLVTEISSSG 431
Query: 434 LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493
L+LDV YDALIE S++ QDFQS FSLFRDMR AR+ DLKGSYLTIMTGLMENHRPELMA
Sbjct: 432 LKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARVLDLKGSYLTIMTGLMENHRPELMA 491
Query: 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
AFLDEVVEDPR+EV THDWNSIIHAFCKAGRLEDA+RT RRM FLQFEPNDQTYLSLING
Sbjct: 492 AFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSLING 551
Query: 554 YVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613
YV+AE+YF V+M+W+E+KRK++ DG KGIKF+ NLVDAFLYA+VKGGFFDAVMQVVEKS+
Sbjct: 552 YVSAEKYFDVMMLWNEVKRKLAGDGPKGIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSK 611
Query: 614 EMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLNA 662
EMK+FVDKW+YKQAFME HKKLKVA+LRK+N +KMEALIAFKNWAGLNA
Sbjct: 612 EMKIFVDKWRYKQAFMETHKKLKVARLRKKNVRKMEALIAFKNWAGLNA 660
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841661|ref|XP_002888712.1| hypothetical protein ARALYDRAFT_339164 [Arabidopsis lyrata subsp. lyrata] gi|297334553|gb|EFH64971.1| hypothetical protein ARALYDRAFT_339164 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/636 (68%), Positives = 527/636 (82%), Gaps = 12/636 (1%)
Query: 30 LYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLHKSLLTNNTDEAWK 89
LYSFL+PS+FS K +L P SP Q + TLTQ+ +S E+ LH SL T+NTDEAWK
Sbjct: 24 LYSFLKPSLFSNKPITLT--PSLSPPQNLK--TLTQEQKSSFESTLHDSLTTHNTDEAWK 79
Query: 90 SFKSLTANSLFPSKPVTNSLIAHLSSLQDN-----HNLKRAFASVVYVIEKNPKLLDFQT 144
+F+SLTA S P K + NSLI HLS+ +++ H LKRAFAS YVI+K+P LL+F+T
Sbjct: 80 AFRSLTAASSLPEKRLINSLITHLSNTEESGENTAHRLKRAFASAAYVIQKDPILLEFET 139
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204
V TL+ SM+ A A PA ALVKCMFKNRYF+PF+LWG ++DICR+N + AFLKVF+E
Sbjct: 140 VRTLMESMKLAKAAGPALALVKCMFKNRYFVPFDLWGHLIIDICRENGSLAAFLKVFKES 199
Query: 205 CRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY 264
CRIA+DE LDFMKP++ A NAALE CC L+S++DA+ VIE+M+VLGV+P+E SFGFLAY
Sbjct: 200 CRIAVDEKLDFMKPDLVASNAALEACCRQLESLADADNVIESMAVLGVKPDELSFGFLAY 259
Query: 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME 324
LYA KGL+EKI ELE+LM+ FGF+S+ + YS++ISGYVK G+L++ S IL L G E
Sbjct: 260 LYARKGLREKISELENLMDGFGFASRRILYSNMISGYVKSGDLDNVSDVILHSLKGDGKE 319
Query: 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS 384
S F +ETYCE+VKGF+++ +VKGLA +IIEAQKLE S I D SVGFGII+ACVNLG S
Sbjct: 320 -SGFGEETYCELVKGFIESKSVKGLAKVIIEAQKLESSSIDADSSVGFGIINACVNLGFS 378
Query: 385 DKAHSILDEMNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443
DKAHSIL+EM A G SVG+G YVP LKAYCKE+RTAEATQLV +I+SSGLQLDV Y+A
Sbjct: 379 DKAHSILEEMIAQGGGSVGIGAYVPILKAYCKEYRTAEATQLVTEINSSGLQLDVEIYNA 438
Query: 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503
LIEAS+T+QDF SAF+LFRDMRE R+ DLKGSYLTIMTGL+EN RPELMAAFLDEVVEDP
Sbjct: 439 LIEASMTNQDFISAFTLFRDMRETRVGDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDP 498
Query: 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
RVEV +HDWNSIIHAFCK+GRLEDA+RT RRM+FL++EPN+QTYLSLINGYV+ E+YF+V
Sbjct: 499 RVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNV 558
Query: 564 LMMWHEIKRKIST-DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622
L++W+EIK KIS+ + +K K +H LVDAFLYALVKGGFFDA MQVVEKSQEMK+FVDKW
Sbjct: 559 LLLWNEIKGKISSMEAEKRSKLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKW 618
Query: 623 KYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWA 658
+YKQAFME HKKL++ KLRKRN+KKME+L+AFKNWA
Sbjct: 619 RYKQAFMETHKKLRLPKLRKRNYKKMESLVAFKNWA 654
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697827|ref|NP_177089.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806277|sp|P0C7R4.1|PP110_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g69290 gi|332196785|gb|AEE34906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/639 (67%), Positives = 525/639 (82%), Gaps = 12/639 (1%)
Query: 30 LYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLHKSLLTNNTDEAWK 89
LYSFL+PS+FS K + P SP Q + TLT D +S E+ LH SL + TDEAWK
Sbjct: 24 LYSFLKPSLFS--HKPITLSPSLSPPQNPK--TLTPDQKSSFESTLHDSLNAHYTDEAWK 79
Query: 90 SFKSLTANSLFPSKPVTNSLIAHLSSLQDN-----HNLKRAFASVVYVIEKNPKLLDFQT 144
+F+SLTA S P K + NSLI HLS ++ + H LKRAFAS YVIEK+P LL+F+T
Sbjct: 80 AFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKDPILLEFET 139
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204
V TLL SM+ A A PA ALVKCMFKNRYF+PF+LWG ++DICR+N + FLKVF+E
Sbjct: 140 VRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDLWGHLVIDICRENGSLAPFLKVFKES 199
Query: 205 CRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY 264
CRI++DE L+FMKP++ A NAALE CC ++S++DAE VIE+M+VLGV+P+E SFGFLAY
Sbjct: 200 CRISVDEKLEFMKPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAY 259
Query: 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME 324
LYA KGL+EKI ELE+LM+ FGF+S+ + YS++ISGYVK G+L+S S IL L G E
Sbjct: 260 LYARKGLREKISELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGG-E 318
Query: 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS 384
+S FS ETYCE+VKGF+++ +VK LA +I+EAQKLE S + VD SVGFGII+ACVNLG S
Sbjct: 319 ESSFSVETYCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFS 378
Query: 385 DKAHSILDEMNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443
DKAHSIL+EM A G SVG+GVYVP LKAYCKE+RTAEATQLV +ISSSGLQLDV +A
Sbjct: 379 DKAHSILEEMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNA 438
Query: 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503
LIEAS+T+QDF SAF+LFRDMRE R+ DLKGSYLTIMTGL+EN RPELMAAFLDEVVEDP
Sbjct: 439 LIEASMTNQDFISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDP 498
Query: 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
RVEV +HDWNSIIHAFCK+GRLEDA+RT RRM+FL++EPN+QTYLSLINGYV+ E+YF+V
Sbjct: 499 RVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNV 558
Query: 564 LMMWHEIKRKIST-DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622
L++W+EIK KIS+ + +K + +H LVDAFLYALVKGGFFDA MQVVEKSQEMK+FVDKW
Sbjct: 559 LLLWNEIKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKW 618
Query: 623 KYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661
+YKQAFME HKKL++ KLRKRN+KKME+L+AFKNWAGLN
Sbjct: 619 RYKQAFMETHKKLRLPKLRKRNYKKMESLVAFKNWAGLN 657
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12325092|gb|AAG52501.1|AC018364_19 unknown protein; 45065-49536 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/641 (67%), Positives = 526/641 (82%), Gaps = 16/641 (2%)
Query: 30 LYSFLQPSIFSLKRKSLQQD--PPNSPTQQQQQQTLTQDNITSLETNLHKSLLTNNTDEA 87
LYSFL+PS+FS K +L PP +P +TLT D +S E+ LH SL + TDEA
Sbjct: 226 LYSFLKPSLFSHKPITLSPSLSPPQNP------KTLTPDQKSSFESTLHDSLNAHYTDEA 279
Query: 88 WKSFKSLTANSLFPSKPVTNSLIAHLSSLQDN-----HNLKRAFASVVYVIEKNPKLLDF 142
WK+F+SLTA S P K + NSLI HLS ++ + H LKRAFAS YVIEK+P LL+F
Sbjct: 280 WKAFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKDPILLEF 339
Query: 143 QTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFE 202
+TV TLL SM+ A A PA ALVKCMFKNRYF+PF+LWG ++DICR+N + FLKVF+
Sbjct: 340 ETVRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDLWGHLVIDICRENGSLAPFLKVFK 399
Query: 203 ECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFL 262
E CRI++DE L+FMKP++ A NAALE CC ++S++DAE VIE+M+VLGV+P+E SFGFL
Sbjct: 400 ESCRISVDEKLEFMKPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFL 459
Query: 263 AYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGN 322
AYLYA KGL+EKI ELE+LM+ FGF+S+ + YS++ISGYVK G+L+S S IL L G
Sbjct: 460 AYLYARKGLREKISELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGG 519
Query: 323 MEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG 382
E+S FS ETYCE+VKGF+++ +VK LA +I+EAQKLE S + VD SVGFGII+ACVNLG
Sbjct: 520 -EESSFSVETYCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLG 578
Query: 383 LSDKAHSILDEMNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNY 441
SDKAHSIL+EM A G SVG+GVYVP LKAYCKE+RTAEATQLV +ISSSGLQLDV
Sbjct: 579 FSDKAHSILEEMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEIS 638
Query: 442 DALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE 501
+ALIEAS+T+QDF SAF+LFRDMRE R+ DLKGSYLTIMTGL+EN RPELMAAFLDEVVE
Sbjct: 639 NALIEASMTNQDFISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVE 698
Query: 502 DPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYF 561
DPRVEV +HDWNSIIHAFCK+GRLEDA+RT RRM+FL++EPN+QTYLSLINGYV+ E+YF
Sbjct: 699 DPRVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYF 758
Query: 562 SVLMMWHEIKRKIST-DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620
+VL++W+EIK KIS+ + +K + +H LVDAFLYALVKGGFFDA MQVVEKSQEMK+FVD
Sbjct: 759 NVLLLWNEIKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVD 818
Query: 621 KWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661
KW+YKQAFME HKKL++ KLRKRN+KKME+L+AFKNWAGLN
Sbjct: 819 KWRYKQAFMETHKKLRLPKLRKRNYKKMESLVAFKNWAGLN 859
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 662 | ||||||
| TAIR|locus:2026454 | 658 | AT1G69290 "AT1G69290" [Arabido | 0.947 | 0.952 | 0.668 | 4.1e-223 | |
| TAIR|locus:2205440 | 619 | AT1G68980 "AT1G68980" [Arabido | 0.876 | 0.936 | 0.633 | 2.3e-197 | |
| TAIR|locus:2007549 | 793 | AT1G03100 "AT1G03100" [Arabido | 0.495 | 0.413 | 0.375 | 5.9e-78 | |
| TAIR|locus:2074924 | 778 | HCF152 "HIGH CHLOROPHYLL FLUOR | 0.463 | 0.394 | 0.290 | 7.1e-34 | |
| TAIR|locus:4515103412 | 674 | AT4G17616 "AT4G17616" [Arabido | 0.373 | 0.366 | 0.227 | 1.8e-20 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.570 | 0.397 | 0.239 | 1.4e-19 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.490 | 0.435 | 0.242 | 3.2e-19 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.516 | 0.705 | 0.245 | 6.4e-19 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.574 | 0.503 | 0.235 | 2.5e-18 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.501 | 0.515 | 0.260 | 3e-18 |
| TAIR|locus:2026454 AT1G69290 "AT1G69290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2154 (763.3 bits), Expect = 4.1e-223, P = 4.1e-223
Identities = 427/639 (66%), Positives = 518/639 (81%)
Query: 30 LYSFLQPSIFSLKRKSLXXXXXXXXXXXXXXXXXXXDNITSLETNLHKSLLTNNTDEAWK 89
LYSFL+PS+FS K +L D +S E+ LH SL + TDEAWK
Sbjct: 24 LYSFLKPSLFSHKPITLSPSLSPPQNPKTLTP----DQKSSFESTLHDSLNAHYTDEAWK 79
Query: 90 SFKSLTANSLFPSKPVTNSLIAHLSSLQDN-----HNLKRAFASVVYVIEKNPKLLDFQT 144
+F+SLTA S P K + NSLI HLS ++ + H LKRAFAS YVIEK+P LL+F+T
Sbjct: 80 AFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKDPILLEFET 139
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204
V TLL SM+ A A PA ALVKCMFKNRYF+PF+LWG ++DICR+N + FLKVF+E
Sbjct: 140 VRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDLWGHLVIDICRENGSLAPFLKVFKES 199
Query: 205 CRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY 264
CRI++DE L+FMKP++ A NAALE CC ++S++DAE VIE+M+VLGV+P+E SFGFLAY
Sbjct: 200 CRISVDEKLEFMKPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAY 259
Query: 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME 324
LYA KGL+EKI ELE+LM+ FGF+S+ + YS++ISGYVK G+L+S S IL L G E
Sbjct: 260 LYARKGLREKISELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGG-E 318
Query: 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS 384
+S FS ETYCE+VKGF+++ +VK LA +I+EAQKLE S + VD SVGFGII+ACVNLG S
Sbjct: 319 ESSFSVETYCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFS 378
Query: 385 DKAHSILDEMNACGC-SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443
DKAHSIL+EM A G SVG+GVYVP LKAYCKE+RTAEATQLV +ISSSGLQLDV +A
Sbjct: 379 DKAHSILEEMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNA 438
Query: 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503
LIEAS+T+QDF SAF+LFRDMRE R+ DLKGSYLTIMTGL+EN RPELMAAFLDEVVEDP
Sbjct: 439 LIEASMTNQDFISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDP 498
Query: 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
RVEV +HDWNSIIHAFCK+GRLEDA+RT RRM+FL++EPN+QTYLSLINGYV+ E+YF+V
Sbjct: 499 RVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNV 558
Query: 564 LMMWHEIKRKIST-DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622
L++W+EIK KIS+ + +K + +H LVDAFLYALVKGGFFDA MQVVEKSQEMK+FVDKW
Sbjct: 559 LLLWNEIKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKW 618
Query: 623 KYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661
+YKQAFME HKKL++ KLRKRN+KKME+L+AFKNWAGLN
Sbjct: 619 RYKQAFMETHKKLRLPKLRKRNYKKMESLVAFKNWAGLN 657
|
|
| TAIR|locus:2205440 AT1G68980 "AT1G68980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1911 (677.8 bits), Expect = 2.3e-197, P = 2.3e-197
Identities = 378/597 (63%), Positives = 458/597 (76%)
Query: 69 TSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDN-------HN 121
+S E+ LH SL+T++TD+AWK F+S A S P K + NSLI HLSS + H
Sbjct: 29 SSFESTLHHSLITHDTDQAWKVFRSFAAASSLPDKRLLNSLITHLSSFHNTDQNTSLRHR 88
Query: 122 LKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWG 181
LKRAF S YVIEK+P LL+F+TV T+L SM+ A + PA ALV+CMFKNRYF+PF+LWG
Sbjct: 89 LKRAFVSTTYVIEKDPILLEFETVRTVLESMKLAKASGPALALVECMFKNRYFVPFDLWG 148
Query: 182 GFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAE 241
L+D+CR+N + AFLKVF E CRIA+DE LDFMKP++ A NAALE CC ++S++DAE
Sbjct: 149 DLLIDVCRENGSLAAFLKVFRESCRIAVDEKLDFMKPDLVASNAALEACCRQMESLADAE 208
Query: 242 KVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGY 301
+IE+M VLGV+P+E SFGFLAYLYA KGL+EKI ELE LM+ GF+S+ + YSS+ISGY
Sbjct: 209 NLIESMDVLGVKPDELSFGFLAYLYARKGLREKISELEDLMDGLGFASRRILYSSMISGY 268
Query: 302 VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEP 361
VK G+L+SAS IL L G E S FS+ETYCE+V+GF+++ +V+ LA LIIEAQKLE
Sbjct: 269 VKSGDLDSASDVILCSLKGVG-EASSFSEETYCELVRGFIESKSVESLAKLIIEAQKLES 327
Query: 362 SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE 421
V SVGFGI++ACV LG S K SILDE+NA G S G+GVYVP LKAYCKE RT+E
Sbjct: 328 MSTDVGGSVGFGIVNACVKLGFSGK--SILDELNAQGGSGGIGVYVPILKAYCKEGRTSE 385
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
ATQLV +ISSSGLQLDV Y+ +IEAS+T DF SA +LFRDMRE R+ DLK YLTIMT
Sbjct: 386 ATQLVTEISSSGLQLDVETYNTMIEASMTKHDFLSALTLFRDMRETRVADLKRCYLTIMT 445
Query: 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
GL+EN RPELMA F++EV+EDPRVEVK+HDWNSIIHAFCK+GRL DAK T RRM FLQ+E
Sbjct: 446 GLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQYE 505
Query: 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601
PN+QTYLSLINGYV+ E+YF V+++W E K K K EH L DAFL ALVKGGF
Sbjct: 506 PNNQTYLSLINGYVSCEKYFEVVVIWKEFK-------DKKAKLEHALADAFLNALVKGGF 558
Query: 602 FDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWA 658
F +QV+EK QEMK+FVDKW+YK FME K L++ KLRKR KK+E L AFKNWA
Sbjct: 559 FGTALQVIEKCQEMKIFVDKWRYKATFMETQKNLRLPKLRKRKMKKIEFLDAFKNWA 615
|
|
| TAIR|locus:2007549 AT1G03100 "AT1G03100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 128/341 (37%), Positives = 202/341 (59%)
Query: 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388
++E Y ++ K FL++G +K LA +++A+ E S + D S+ +I+AC++LG+ D+AH
Sbjct: 458 TEEIYVKLAKAFLESGKMKELAKFLLKAEH-EDSPVSSDNSMLINVINACISLGMLDQAH 516
Query: 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448
+LDEM G G VY LKAYC ++T E T L+ D +G+QLD Y+ALI++
Sbjct: 517 DLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQ 576
Query: 449 ITSQDFQSAFSLFRDMREARIYDLKGS---YLTIMTGLMENHRPELMAAFLDEVVEDPRV 505
+ D A ++F++M+EA+I L+G + ++ G N LM+ L E+ E +
Sbjct: 577 VIQNDTHGALNVFKEMKEAKI--LRGGNQKFEKLLKGCEGNAEAGLMSKLLREIREVQSL 634
Query: 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT-AEQYFSVL 564
+ HDWN++IH F K G ++DA++ L+RM L PN QT+ S++ GY +Y V
Sbjct: 635 DAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSMVTGYAAIGSKYTEVT 694
Query: 565 MMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
+W E+K I+ +KF+ L+DA LY V+GGFF +VVE ++ +FVDK+KY
Sbjct: 695 ELWGEMK-SIAA-ATSSMKFDQELLDAVLYTFVRGGFFSRANEVVEMMEKKNMFVDKYKY 752
Query: 625 KQAFMENHK---KLKVAKLRKRN-FKKMEALIAFKNWAGLN 661
+ F++ HK K K K++ + KK EA + FK W GL+
Sbjct: 753 RMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGLS 793
|
|
| TAIR|locus:2074924 HCF152 "HIGH CHLOROPHYLL FLUORESCENCE 152" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 7.1e-34, P = 7.1e-34
Identities = 93/320 (29%), Positives = 160/320 (50%)
Query: 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
Y ++KG+++NG V A ++ ++ + D ++SA VN GL D+A +L
Sbjct: 417 YTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLA 476
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS-SGLQLDVGNYDALIEASITS 451
EM G Y LK YCK+ + A L+ +++ +G++ DV +Y+ +I+ I
Sbjct: 477 EMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILI 536
Query: 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511
D A + F +MR I K SY T+M + +P+L DE++ DPRV+V
Sbjct: 537 DDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIA 596
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571
WN ++ +C+ G +EDA+R + RM F PN TY SL NG A + L++W EIK
Sbjct: 597 WNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIK 656
Query: 572 RKISTDGQKG------------IKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV 619
+ + ++ +K + L+D V+ FF ++++ +E +
Sbjct: 657 ERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPP 716
Query: 620 DKWKYKQAFMENHKKLKVAK 639
+K KYK+ ++E H ++ +K
Sbjct: 717 NKTKYKKIYVEMHSRMFTSK 736
|
|
| TAIR|locus:4515103412 AT4G17616 "AT4G17616" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 58/255 (22%), Positives = 125/255 (49%)
Query: 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD-ISSSGLQLDVGNYDAL 444
K H L E++ S+G + C EA ++D ++S+G +++ Y +
Sbjct: 392 KRHDNLPELSKLLFSLGGSRLCADVIDACVAIGWLEAAHDILDDMNSAGYPMELATYRMV 451
Query: 445 IEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM--TGLMENHRPELMAAFLDEVVED 502
+ S+ ++A L + M +A + + + + T ++ EL + E+
Sbjct: 452 LSGYYKSKMLRNAEVLLKQMTKAGLITDPSNEIVVSPETEEKDSENTELRDLLVQEINAG 511
Query: 503 PRVEVKT--HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQY 560
+++ + ++ NS ++ FCKA DA T R++ ++ P Q++ LI+ Y + Y
Sbjct: 512 KQMKAPSMLYELNSSLYYFCKAKMQGDALITYRKIPKMKIPPTVQSFWILIDMYSSLGMY 571
Query: 561 FSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620
+ ++W +IKR I++ K +K +L++ + ++GG+F+ VM+++ +E ++ D
Sbjct: 572 REITIVWGDIKRNIAS---KNLKTTQDLLEKLVVNFLRGGYFERVMELISYMKENDMYND 628
Query: 621 KWKYKQAFMENHKKL 635
YK +++ HK L
Sbjct: 629 LTMYKNEYLKLHKNL 643
|
|
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 96/401 (23%), Positives = 178/401 (44%)
Query: 229 GCCYGLQS-VSDAEKVIETMSVL---GVRPNESSFGFLAYLYA-LKGLQEKIVELESLMN 283
GC L + V K +E V+ GV+ N ++ + + LK E ++
Sbjct: 488 GCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVK 547
Query: 284 EFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN 343
E G ++ Y+++IS + +GN++ A +T+ + ++ T+ ++ G+ ++
Sbjct: 548 E-GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQ---KLRHRPTTR-TFMPIIHGYAKS 602
Query: 344 GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL 403
G+++ + + G V G+I+ V +KA ILDEM G S
Sbjct: 603 GDMRRSLEVF---DMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANE 659
Query: 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463
Y ++ Y T +A + + + GL +D+ Y+AL++A S QSA ++ ++
Sbjct: 660 HTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKE 719
Query: 464 MREARIYDLKGSYLTIMTGLMENHRPELM-AAFLDEVVEDPRVEVKTHDWNSIIHAFCKA 522
M I Y ++ G R ++ AA L + ++ V+ H + S I A KA
Sbjct: 720 MSARNIPRNSFVYNILIDGWAR--RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKA 777
Query: 523 GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK-ISTDGQKG 581
G + A +T+ M L +PN +TY +LI G+ A L + E+K I D K
Sbjct: 778 GDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPD--KA 835
Query: 582 IKFEHNLVDAFLY--ALVKGGFFDAVMQVVEKSQEMKVFVD 620
+ H L+ + L ++ + + VM + ++ E + VD
Sbjct: 836 VY--HCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVD 874
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 82/338 (24%), Positives = 150/338 (44%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
PN+ N ++G C L+ + D K++ +M++ G+ PN S+ + +G +++
Sbjct: 238 PNVVTYNTLIDGYCK-LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337
+ + MN G+S V Y++LI GY K GN A L G S TY ++
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP----SVITYTSLI 352
Query: 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397
+ GN+ + ++ G+ + ++ G ++A+ +L EMN
Sbjct: 353 HSMCKAGNMNRAMEFL---DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409
Query: 398 GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457
G S + Y + +C + +A ++ D+ GL DV +Y ++ S D A
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD--WNSI 515
+ R+M E I +Y +++ G E R + +E++ RV + + + ++
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML---RVGLPPDEFTYTAL 526
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
I+A+C G LE A + M+ P+ TY LING
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
|
|
| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 90/366 (24%), Positives = 164/366 (44%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P++ ++ + G C G V DA ++ M +G RP+ + + GL V
Sbjct: 136 EPDVVTVSSLINGFCQG-NRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 194
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYC 334
EL M G + V Y+SL++G G A+R + +M D T+
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR------DMVMRDIVPNVITFT 248
Query: 335 EVVKGFLQNGNVKGLANLIIEAQK--LEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
V+ F++ G L E + ++P + + G+ C++ G D+A +LD
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN-GL---CMH-GRVDEAKQMLD 303
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
M GC + Y + +CK R E T+L +++ GL D Y+ +I+ +
Sbjct: 304 LMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAG 363
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512
+A +F M ++R +++ +Y ++ GL N R E A L E ++ +E+ +
Sbjct: 364 RPDAAQEIFSRM-DSRP-NIR-TYSILLYGLCMNWRVE-KALVLFENMQKSEIELDITTY 419
Query: 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572
N +IH CK G +EDA R + +P+ +Y ++I+G+ Q+ +++ R
Sbjct: 420 NIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLY----R 475
Query: 573 KISTDG 578
K+ DG
Sbjct: 476 KMQEDG 481
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 93/395 (23%), Positives = 170/395 (43%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
+KP++ N ++ C Q + A ++E M G+ P+E +F + Y +G +
Sbjct: 185 IKPDVSTFNVLIKALCRAHQ-LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
+ + M EFG S V + ++ G+ K G +E A I N + + T+
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM---SNQDGFFPDQYTFNT 300
Query: 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMN 395
+V G + G+VK I++ E G D +IS LG +A +LD+M
Sbjct: 301 LVNGLCKAGHVKHAIE-IMDVMLQE--GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI 357
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455
CS Y + CKE++ EAT+L ++S G+ DV +++LI+ +++ +
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR 417
Query: 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515
A LF +MR + +Y ++ L + + L ++ E +N++
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVITYNTL 476
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575
I FCKA + +A+ M N TY +LI+G + + + ++
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM----I 532
Query: 576 TDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVE 610
+GQK K+ +N + L +GG +V+
Sbjct: 533 MEGQKPDKYTYN---SLLTHFCRGGDIKKAADIVQ 564
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 90/345 (26%), Positives = 145/345 (42%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
KP + N + G C VSDA +I+ M G +PNE ++G + + G +
Sbjct: 190 KPTLITLNTLVNGLCLN-GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAM 248
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYC 334
EL M E V YS +I G K G+L++A ME F + TY
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF------NEMEIKGFKADIITYN 302
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394
++ GF G A L+ + K + S VV SV +I + V G +A +L EM
Sbjct: 303 TLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV---LIDSFVKEGKLREADQLLKEM 359
Query: 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454
G + Y + +CKE+R EA Q+V + S G D+ ++ LI +
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Query: 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514
LFR+M + +Y T++ G ++ + E+ E+V RV +
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR-RVRPDIVSYKI 478
Query: 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559
++ C G LE A ++ + E + Y+ +I+G A +
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASK 523
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C7R4 | PP110_ARATH | No assigned EC number | 0.6776 | 0.9471 | 0.9528 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0010025001 | hypothetical protein (654 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 662 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
+N++I +CK G++E+A + M +PN TY LI+G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 23/86 (26%), Positives = 33/86 (38%)
Query: 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNY 441
G DKA IL + G +G Y + A +A +L DI S L+ V
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 442 DALIEASITSQDFQSAFSLFRDMREA 467
+ALI A A + +M+
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRL 748
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Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRM 535
+N++I C+AGR+++A L M
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDEM 33
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This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544
+N++I CKAGR+E+A + M EP+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
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This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMI 536
+NS+I +CKAG+LE+A + M
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMK 27
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This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 6/199 (3%)
Query: 349 LANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408
LA + E ++P I +VG ++ AC N G D+A + ++ VY
Sbjct: 565 LAEMKAETHPIDPDHI----TVG-ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468
+ + ++ A + D+ G++ D + AL++ + + D AF + +D R+
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDA 528
I SY ++M G N + A L E ++ ++ N++I A C+ +L A
Sbjct: 680 IKLGTVSYSSLM-GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 529 KRTLRRMIFLQFEPNDQTY 547
L M L PN TY
Sbjct: 739 LEVLSEMKRLGLCPNTITY 757
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Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 509 THDWNSIIHAFCKAGRLEDAKRTLRRMI 536
+N+++ A KAG + A L M
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK 28
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This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 662 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.04 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.88 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.65 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.38 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.31 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.22 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.19 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.19 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.19 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.49 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.46 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.46 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.43 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.36 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.33 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.24 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.15 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.1 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.09 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.09 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.08 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.08 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.02 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.98 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.81 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.73 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.7 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.64 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.61 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.54 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.17 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.95 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.88 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.7 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.68 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.56 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.56 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.36 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.35 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.22 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.21 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.11 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.77 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.6 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.49 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.42 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.32 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.22 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.12 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.03 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.88 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.63 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.62 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.52 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.48 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.42 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.41 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.32 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.09 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.09 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.04 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.87 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.76 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.46 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.21 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.76 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.31 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.05 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.14 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.71 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.09 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.07 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.2 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.99 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.79 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.39 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.02 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.48 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.16 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 84.64 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.09 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.02 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.77 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.76 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.33 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.29 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.96 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.7 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.69 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 82.26 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.03 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.61 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 80.9 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.85 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 80.72 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.71 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 80.32 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.19 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.08 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-75 Score=642.79 Aligned_cols=545 Identities=15% Similarity=0.159 Sum_probs=466.7
Q ss_pred ccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc---------------------------
Q 038801 64 TQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSL--------------------------- 116 (662)
Q Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--------------------------- 116 (662)
+.++..+++.++.++++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34556667778888888888888888888877777666666665555554443
Q ss_pred --------CCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcc----------
Q 038801 117 --------QDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFE---------- 178 (662)
Q Consensus 117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 178 (662)
|+...+.+.|+.+ ..+|..+|+.++.+|++.|++++|+.+|++|...|..|+..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m--------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKM--------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcC--------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 4333333333221 23677788888888888888888888888887777666533
Q ss_pred ------------------------cHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 179 ------------------------LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 179 ------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
..++.|+.+|+++|++++|.++|++| ..||.++||++|.+|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m-----------~~~d~~s~n~li~~~~~~- 266 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM-----------PRRDCISWNAMISGYFEN- 266 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC-----------CCCCcchhHHHHHHHHhC-
Confidence 34577889999999999999999998 578999999999999998
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHH
Q 038801 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 394 (662)
.+|.. ||..+||.+|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|++++|.++++.|
T Consensus 347 ~~m~~--------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 347 SRMET--------KDAVSWTAMISGYEKNGLPDKALETYALMEQ---DNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred hhCCC--------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 66532 4899999999999999999999999999988 899999999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc
Q 038801 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474 (662)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 474 (662)
.+.|+.|+..+|++||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 9999999999999999999999999999999999974 5888888888888888888888888888875 4677777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------------------------ccchhhHHHHHHHHHhcCC
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRV------------------------------EVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~p~~~~~~~li~~~~~~g~ 524 (662)
||+.++.+|++.|..+.+.+++..+.+. |+ .+|..+||+||.+|++.|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 7776665555554444444444433332 11 5688899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHH
Q 038801 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 604 (662)
.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ +.|+.|+..+|+.++.+|.+.|++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~------~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE------KYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH------HhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999984 57999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 605 VMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 605 A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
|.+++++|. ..+.+..|..++.+|..+++.+.++.+.+++++++|.+
T Consensus 644 A~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 644 AYNFINKMP-ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 999999984 34445589999999999999999999999999999974
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-71 Score=598.36 Aligned_cols=524 Identities=14% Similarity=0.145 Sum_probs=485.6
Q ss_pred cchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCC-CCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChH
Q 038801 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSL-FPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQ 143 (662)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (662)
.++...|..++..+++.|++++|+++|++|.+.|+ .++...++.++.+|.+.|....+...+..+ . .|+..
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M----~----~pd~~ 438 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI----R----NPTLS 438 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc----C----CCCHH
Confidence 34677888999999999999999999999999885 567788889999999999876666655443 1 28999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
+|+.++.+|++.|+++.|..+|++|.+.|..|+.. .++.|+.+|++.|++++|.++|++|.+ .|+.||..+|
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~-tynsLI~~y~k~G~vd~A~~vf~eM~~-------~Gv~PdvvTy 510 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAKSGKVDAMFEVFHEMVN-------AGVEANVHTF 510 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCcCHHHHHHHHHHHHH-------cCCCCCHHHH
Confidence 99999999999999999999999999998765554 478899999999999999999999987 5889999999
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCcHHhHHHHHHHH
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNE--FGFSSQMVFYSSLISGY 301 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~ 301 (662)
|.+|.+|++. |++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|
T Consensus 511 naLI~gy~k~-G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 511 GALIDGCARA-GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 9999999998 99999999999999999999999999999999999999999999999986 67899999999999999
Q ss_pred HhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 302 VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
++.|++++|.++|.+|.+. ++.|+..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.
T Consensus 590 ~k~G~ldeA~elf~~M~e~----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~---~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEY----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK---KGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhC
Confidence 9999999999998777665 7889999999999999999999999999999998 89999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
|++++|.+++++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----c---------------
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----A--------------- 522 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~--------------- 522 (662)
++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||..+|++++..|.+ +
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~ 821 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRP 821 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999986 999999999999976432 1
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc
Q 038801 523 ----GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK 598 (662)
Q Consensus 523 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 598 (662)
+..+.|..+|++|++.|+.||..||+.++.++++.+..+.+..++++|. ..+..|+..+|+.++.++.+
T Consensus 822 ~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-------~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 822 QIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-------ISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred ccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-------cCCCCcchhhhHHHHHhhcc
Confidence 1246799999999999999999999999988888899999999999998 78899999999999999843
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHH
Q 038801 599 GGFFDAVMQVVEKSQEMKVFVDKW 622 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~p~~~ 622 (662)
. .++|..++++|.+.|+.|+..
T Consensus 895 ~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 895 Y--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C--hHHHHHHHHHHHHcCCCCCcc
Confidence 2 468999999999999999863
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=569.03 Aligned_cols=517 Identities=15% Similarity=0.111 Sum_probs=473.7
Q ss_pred CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCc
Q 038801 99 LFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNP-KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPF 177 (662)
Q Consensus 99 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (662)
..++...|..++..+.+.|+..++.+.|+.+ ...+ ..++..+++.++.+|.+.|.+++|+.+++.|.. ++
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M----~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd 436 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDM----EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PT 436 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHH----HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CC
Confidence 3467788999999999999988888887765 3445 457788888999999999999999999999964 45
Q ss_pred ccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcc
Q 038801 178 ELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES 257 (662)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 257 (662)
...++.++..|++.|+++.|.++|++|.+ .|+.||..+||.+|.+|++. |++++|.++|++|.+.|+.||..
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-------~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQE-------AGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHH
Confidence 56688899999999999999999999988 68999999999999999998 99999999999999999999999
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Q 038801 258 SFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337 (662)
Q Consensus 258 t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li 337 (662)
||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|.+|.... .++.||..+|+++|
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~--~gi~PD~vTynaLI 586 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--HPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc--CCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988887642 37889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH 417 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (662)
.+|++.|++++|.++|++|.+ .++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e---~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHE---YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHH---cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038801 418 RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497 (662)
Q Consensus 418 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 497 (662)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------------------
Q 038801 498 EVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT--------------------- 556 (662)
Q Consensus 498 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--------------------- 556 (662)
+|.+. |+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+..|.+
T Consensus 744 eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 744 EMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 99986 99999999999999999999999999999999999999999999999976542
Q ss_pred --cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhH--HHHHHHHh
Q 038801 557 --AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY--KQAFMENH 632 (662)
Q Consensus 557 --~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~~~~~~~ 632 (662)
.+..++|+.+|++|. +.|+.||..||+.++.++.+.+..+.+..+++.|...+..|+..++ ++..+
T Consensus 823 ~~n~w~~~Al~lf~eM~-------~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--- 892 (1060)
T PLN03218 823 IENKWTSWALMVYRETI-------SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--- 892 (1060)
T ss_pred cccchHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---
Confidence 123467999999999 8999999999999998888999999999999999877777774444 34443
Q ss_pred hh-hhhhHHHHHHHHhh
Q 038801 633 KK-LKVAKLRKRNFKKM 648 (662)
Q Consensus 633 ~~-~~~a~~~~~~~~~l 648 (662)
++ .+.|..+++.+.++
T Consensus 893 ~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 893 GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred ccChHHHHHHHHHHHHc
Confidence 32 35677777776663
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-68 Score=573.96 Aligned_cols=475 Identities=15% Similarity=0.143 Sum_probs=433.4
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccH
Q 038801 101 PSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELW 180 (662)
Q Consensus 101 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 180 (662)
.+..+|+.++.++.+.|+..++.+.|+.+ ....+..|+..+|+.++.+|++.++++.|.+++..|.+.|..|+ ...
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m---~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~ 160 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEIL---EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYM 160 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHH
Confidence 34445566666666665544444444332 12234557778888888888888888999999999999887765 455
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHH
Q 038801 181 GGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFG 260 (662)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 260 (662)
++.|+.+|.+.|++++|.++|++| ..||..+||++|.+|++. |++++|+++|++|.+.|+.||..||+
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m-----------~~~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEM-----------PERNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcC-----------CCCCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 778889999999999999999998 568999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHH
Q 038801 261 FLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGF 340 (662)
Q Consensus 261 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 340 (662)
.++.+|++.|..+.+.+++..+.+.|+.+|..+|++||++|+++|++++|.++|.++.+ +|.++||.+|.+|
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------~~~vt~n~li~~y 300 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------KTTVAWNSMLAGY 300 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--------CChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999766533 3999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 341 LQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
++.|+.++|+++|++|.+ .|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|+++|+++
T Consensus 301 ~~~g~~~eA~~lf~~M~~---~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRD---SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 999999999999999988 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+|.++|++|. .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 378 ~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999997 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK 580 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 580 (662)
++.++.|+..+|++|+.+|++.|++++|.+++++| ++.||..+|++|+.+|...|+++.|..+++++.
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--------- 521 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--------- 521 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---------
Confidence 88899999999999999999999999999999887 478999999999999999999999999999998
Q ss_pred CCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 581 GIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 581 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
++.|+ ..+|..|+..|.+.|++++|.+++++|.+.|+.
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 56675 579999999999999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=583.01 Aligned_cols=506 Identities=14% Similarity=0.115 Sum_probs=460.7
Q ss_pred cchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHH
Q 038801 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQT 144 (662)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (662)
.++..+++.++..|++.|+++.|..+|+.|.. ||..+||.++.+|.+.|+..++.+.|.. |...+..||..+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~----M~~~g~~Pd~~t 290 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT----MRELSVDPDLMT 290 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH----HHHcCCCCChhH
Confidence 34566667777777777788888888877764 6777788888888888876666666654 457788899999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHH
Q 038801 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACN 224 (662)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (662)
|+.++.+|++.|+.+.|.+++..|.+.|..|+ ...++.|+.+|.+.|++++|.++|++| ..||..+||
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~~A~~vf~~m-----------~~~d~~s~n 358 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVD-VSVCNSLIQMYLSLGSWGEAEKVFSRM-----------ETKDAVSWT 358 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccc-hHHHHHHHHHHHhcCCHHHHHHHHhhC-----------CCCCeeeHH
Confidence 99999999999999999999999998886655 455788999999999999999999998 568999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 304 (662)
++|.+|++. |++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|+++
T Consensus 359 ~li~~~~~~-g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 359 AMISGYEKN-GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCCh
Q 038801 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS 384 (662)
Q Consensus 305 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 384 (662)
|++++|.++|.++.+ +|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||++++.+|++.|++
T Consensus 438 g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~----~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 438 KCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL----TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred CCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh----CCCCCHhHHHHHHHHHhhhchH
Confidence 999999999766543 3889999999999999999999999999974 6999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+.+.+++..+.+.|+.+|..++|+||.+|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 579999999999999999999999999999
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 465 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
.+.|+.||..||+.++.+|++.|++++|.++|+.|.++.++.|+..+|++|+.+|++.|++++|.+++++|. ++||.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 999999999999999999999999999999999999778999999999999999999999999999999995 79999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
.+|++|+.+|...|+.+.+....+++. .+.|+. ..|..|.+.|.+.|++++|.++.+.|++.|+.++
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~---------~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIF---------ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH---------hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999988888 456654 6778888899999999999999999999988754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-61 Score=519.01 Aligned_cols=473 Identities=14% Similarity=0.109 Sum_probs=442.0
Q ss_pred CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC
Q 038801 138 KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK 217 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (662)
...+..+++.++..+.+.|++++|+++|+.|...+...++...++.++.+|.+.++++.|.+++..|.+ .|+.
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-------~g~~ 155 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-------SGFE 155 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------hCCC
Confidence 345556899999999999999999999999998765555666688899999999999999999999987 5899
Q ss_pred ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (662)
||..+||.++.+|++. |++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 156 ~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 156 PDQYMMNRVLLMHVKC-GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred cchHHHHHHHHHHhcC-CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 9999999999999998 99999999999996 589999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
+.+|++.|..+.+.+++..+.+. |..||..+||.||.+|++.|++++|.++|++|.. +|..+|+++|.+
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~~vt~n~li~~ 299 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------KTTVAWNSMLAG 299 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------CChhHHHHHHHH
Confidence 99999999999999987666654 7788999999999999999999999999999853 588999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 457 (662)
|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..||+.++.+|++.|+.++|.++|+.|.+
T Consensus 380 ~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 380 RNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999964 67899999999999999999999999999986 9999999999999999999999999999999986
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 538 -LQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 538 -~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.|+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.+
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 599999999999999999999999999998654 478999999999999999999999999999997766
Q ss_pred CC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 617 VF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 617 ~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
+. +..+..+...+...|+++.|.++.+.+.+.
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 64 457888888999999999999999888764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=295.21 Aligned_cols=534 Identities=12% Similarity=0.039 Sum_probs=249.5
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 69 TSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
..+..+...+...|++++|+..++.+...... +...+..+...+.+.|+.+.+...++... ... +.+...+..+
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~~~l 403 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKAT---ELD--PENAAARTQL 403 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC--CCCHHHHHHH
Confidence 33444445555556666666665555543321 34445555555555555554444444332 111 1233344444
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALE 228 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 228 (662)
...+...|++++|+..++.+.+.. |........++..+.+.|++++|.++++++... ...+..+|+.+..
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~ 473 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKK--------QPDNASLHNLLGA 473 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCcHHHHHHHH
Confidence 555555555555555555554432 222222233344444445555555554444331 2223334444444
Q ss_pred HHhcc---------------------------------CCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHH
Q 038801 229 GCCYG---------------------------------LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275 (662)
Q Consensus 229 ~~~~~---------------------------------~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 275 (662)
.+... .|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 44443 144455555444444332 22333444444444445555555
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIE 355 (662)
Q Consensus 276 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 355 (662)
..+++.+.+.+ +.+...+..+...|.+.|+.++|..++.++++..+ .+...|..+..++...|++++|.+.|++
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444432 22333444444555555555555554444443211 1344455555555555555555555555
Q ss_pred HHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 356 AQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 356 m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
+.+..+ .+...+..+..++...|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ .
T Consensus 627 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 627 LLALQP----DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 443211 122234444445555555555555555554432 3334455555555555555555555555554442 1
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 515 (662)
.+...+..+...+...|++++|...|+++.+.+ |+..++..+...+.+.|+.++|.+.++++.+.. ..+...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 234444445555555555555555555555442 222344445555555555555555555554431 1233445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLY 594 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~ 594 (662)
...|...|++++|.++|+++.+.. ..+...++.+...+...|+ .+|+.+++++.. ..|+ ..++..+..
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~---------~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK---------LAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh---------hCCCCcHHHHHHHH
Confidence 555555555555555555555432 2233455555555555555 445555555551 1222 234444555
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHH
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFK 646 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~ 646 (662)
++.+.|++++|.++++++.+.++. |.++..+...+...|+.+.|.+.+++++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555555554442 3444444444455555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=293.44 Aligned_cols=541 Identities=11% Similarity=0.026 Sum_probs=350.9
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 038801 70 SLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLL 149 (662)
Q Consensus 70 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 149 (662)
.+..+...+...|++++|...|+.+.+..+. +...+..+...+.+.|+...+...+..+. . ..+.+...+..+.
T Consensus 297 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~~~~~l~ 370 (899)
T TIGR02917 297 ALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPAL---G--LDPDDPAALSLLG 370 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHH---h--cCCCCHHHHHHHH
Confidence 3444556677899999999999999875432 45667778888999999887777776542 2 2345677889999
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHH
Q 038801 150 GSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEG 229 (662)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (662)
..+...|++++|..+|+++.+.. |.....+..+...+...|++++|.+.|+++.+. ..........++..
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQL--------DPELGRADLLLILS 440 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--------CCcchhhHHHHHHH
Confidence 99999999999999999998753 556666777888888999999999999999763 11223455567778
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhh
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (662)
+.+. |++++|+.+++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 441 ~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRS-GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhc-CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 8887 99999999999998653 5567788889999999999999999999988764 3446667778888888888888
Q ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHH
Q 038801 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS 389 (662)
Q Consensus 310 A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 389 (662)
|.+.|.+++...+. +..++..+...+.+.|+.++|..+++++....+ .+...+..+...+...|++++|..
T Consensus 518 A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 518 AIQRFEKVLTIDPK-----NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP----QEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHHHHHHHHhCcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchhHHHHHHHHHHHCCCHHHHHH
Confidence 88888877765322 566777777777777777777777777654222 233344556666666666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 038801 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI 469 (662)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 469 (662)
+++.+.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. ..+...+..+..++.+.|++++|..+|+++.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 666665543 4455566666666666666666666666665542 1234455555566666666666666666655543
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------------------------------ccchhhHHHHHHH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV-------------------------------EVKTHDWNSIIHA 518 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------------~p~~~~~~~li~~ 518 (662)
+.+..++..+...+...|+.++|..+++.+.+..+. .|+..++..+..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 333445555555555555555555555555443111 1222333444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK 598 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 598 (662)
+.+.|++++|.+.++++.+.. ..+...+..+...|...|++++|.++|+++. ... +.+..++..+...+.+
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV-------KKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-------HhC-CCCHHHHHHHHHHHHh
Confidence 444455555555554444431 2233455555555555555555555555555 111 2234555555555555
Q ss_pred cCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 599 GGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
.|+ ++|+++++++.+..+. |..+..+...+...|+.+.|...++++++++|.
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555 5566666555444332 334444444455557777777777777776664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-22 Score=224.84 Aligned_cols=531 Identities=11% Similarity=-0.007 Sum_probs=357.9
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 038801 73 TNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 73 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (662)
...+.+...|++++|+..|+.+.+....................++.+++.+.++.+ ....|. +...+..+...+
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l---l~~~P~--~~~~~~~LA~ll 191 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRL---NADYPG--NTGLRNTLALLL 191 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHH---HHhCCC--CHHHHHHHHHHH
Confidence 334467789999999999999987543221111111122223346666666666654 444444 456778899999
Q ss_pred HhcCCchhHHHHHHHHHhcCCC--------------------------------CCcccH--------------------
Q 038801 153 RNANTAAPAFALVKCMFKNRYF--------------------------------MPFELW-------------------- 180 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~-------------------- 180 (662)
...|+.++|+..++++.+.... |.....
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 9999999999999998653210 000000
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCc-cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcc--
Q 038801 181 GGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKP-NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES-- 257 (662)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-- 257 (662)
.......+...|++++|+..|++..+ ..| +...+..+-..+.+. |++++|+..|++..+.. |+..
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~---------~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~--p~~~~~ 339 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVR---------ANPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALD--PHSSNR 339 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCccch
Confidence 00112334456777778877777766 233 455666666777776 88888888887776543 2221
Q ss_pred -cH---------H---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCC
Q 038801 258 -SF---------G---FLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME 324 (662)
Q Consensus 258 -t~---------~---~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 324 (662)
.+ . .....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|.+.++..+.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~- 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG- 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 11 1 11234567778888888887777763 334556666777778888888888877777765322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc-----ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038801 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGI-----VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC 399 (662)
Q Consensus 325 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 399 (662)
+...+..+...+. .++.++|+.+++.+....+..+ ......+..+...+...|++++|.+.|++.++..
T Consensus 418 ----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~- 491 (1157)
T PRK11447 418 ----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD- 491 (1157)
T ss_pred ----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 4455656666553 4567777777765422100000 0011234445667778899999999999988864
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-----
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK----- 473 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----- 473 (662)
+.+...+..+...|.+.|++++|...|+++.+. .| +...+..+...+...|+.++|+..++.+......+..
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 446677888888999999999999999998875 34 4444555555667789999999988876543222211
Q ss_pred ----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 038801 474 ----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYL 548 (662)
Q Consensus 474 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 548 (662)
..+..+...+...|+.++|..+++. . + .+...+..+...+.+.|++++|++.|++..+. .| +...+.
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~-p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~ 641 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQ---Q-P--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARL 641 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHh---C-C--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 1233455678889999999998872 1 2 23456778889999999999999999999985 45 457899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CC------
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VD------ 620 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~------ 620 (662)
.++..+...|++++|++.++... ...|+ ..+...+..++...|++++|.++++++.+.... |.
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll---------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLP---------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh---------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 99999999999999999999887 33444 456677888899999999999999999765433 22
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 621 KWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 621 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
.+..........|+.+.|...+++++.
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222335566778999999999988874
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-21 Score=223.56 Aligned_cols=550 Identities=11% Similarity=0.016 Sum_probs=340.0
Q ss_pred cccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhH-----------------HHHHHHHhccCCchhHHHH
Q 038801 63 LTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVT-----------------NSLIAHLSSLQDNHNLKRA 125 (662)
Q Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~ll~~~~~~~~~~~~~~~ 125 (662)
..+.++..+....+.+...|+.++|.+.++++.+..+. ...+ ..+...+.+.|+.+++...
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~--~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD--SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 33446777888889999999999999999999886633 2221 2233467788888888887
Q ss_pred HHHHHHHHHhCCCCCChHH-HHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHH
Q 038801 126 FASVVYVIEKNPKLLDFQT-VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204 (662)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (662)
++... . ..+++... ...........|+.++|+..++++.+.. |........+..++...|+.++|++.|+++
T Consensus 135 ~~~~l---~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 135 YDKLF---N--GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHc---c--CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77652 2 22333221 1111222234689999999999999863 666777788899999999999999999998
Q ss_pred HHhhhh---------hhcC--CCCc-cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH
Q 038801 205 CRIALD---------ENLD--FMKP-NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ 272 (662)
Q Consensus 205 ~~~~~~---------~~~~--~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 272 (662)
...... .... +..+ ....+...+..+-.. ...+.|...+..+......|+... ......+...|++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~-~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~ 285 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG-DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQG 285 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc-hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCH
Confidence 542100 0000 0001 111222223222222 234445555555443322222211 1223445566777
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH------------HHHHHH
Q 038801 273 EKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC------------EVVKGF 340 (662)
Q Consensus 273 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~------------~li~~~ 340 (662)
++|...|++..+.. +.+..++..|...|.+.|+.++|+..|.+.++..+.. +....|. .....+
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~---~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS---SNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---cchhHHHHHHHhhhHHHHHHHHHHH
Confidence 77777777776653 2346666677777777777777777776666543211 1111111 123345
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH-----------
Q 038801 341 LQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPT----------- 409 (662)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----------- 409 (662)
.+.|++++|++.|+++....+. +...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNT----DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 5677777777777776653221 23344556666777777777777777766543 2233333333
Q ss_pred -------------------------------HHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHH
Q 038801 410 -------------------------------LKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSA 457 (662)
Q Consensus 410 -------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 457 (662)
...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33444566666777777666655 33 344555666666777777777
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch---------hhHHHHHHHHHhcCCHHHH
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT---------HDWNSIIHAFCKAGRLEDA 528 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A 528 (662)
...++++.+.. +.+...+..+...+...++.++|...++.+... ...++. ..+..+...+...|+.++|
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777666543 333333444444455666667776666655332 111111 1122345667778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHH
Q 038801 529 KRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 529 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
.++++. ...+...+..+...+.+.|++++|++.|+++. ...|+ ...+..+...+...|++++|.+
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---------~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---------TREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888772 13355677788899999999999999999999 23454 5788889999999999999999
Q ss_pred HHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHH
Q 038801 608 VVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 608 ~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p 650 (662)
.++...+..+. ++....+.......|+.++|...++++++..|
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99998766543 44555555566678999999999999988753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-19 Score=196.23 Aligned_cols=524 Identities=10% Similarity=0.038 Sum_probs=352.2
Q ss_pred hCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchh
Q 038801 81 TNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAP 160 (662)
Q Consensus 81 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 160 (662)
.|++++|+..|++..+..+. +...+..+.+.+...|+.+.+...++... ... |+-..|..++..+ +++++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv---~ld---P~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQL---KRH---PGDARLERSLAAI---PVEVK 126 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC---cccHHHHHHHHHh---ccChh
Confidence 59999999999999887655 37778889999999999887777776553 222 2333333333222 88999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHH--------hhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH-HHHHh
Q 038801 161 AFALVKCMFKNRYFMPFELWGGFLVDI--------CRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA-LEGCC 231 (662)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~ 231 (662)
|..+++++.... |........+... |.+. ++|.+.++ ... ....|+..+.... ...|.
T Consensus 127 A~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-------~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 127 SVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-------FAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-------hCCCCCcHHHHHHHHHHHH
Confidence 999999999854 6666656555555 5444 45555554 211 1234345544444 77777
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhH
Q 038801 232 YGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL-KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310 (662)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 310 (662)
.. |++++|++++.++.+.+. .+..-...+-.+|.. .++ +++..+++. .+.-+......+.+.|.+.|+.++|
T Consensus 194 ~l-~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 194 YL-KQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HH-hCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 76 999999999999988752 233334445456665 355 666666442 2335666777777777777777777
Q ss_pred HHHHHHHHcCCCCCC--------------------------------------------------------CCC------
Q 038801 311 SRTILLCLGGGNMEQ--------------------------------------------------------SDF------ 328 (662)
Q Consensus 311 ~~~~~~~~~~~~~~~--------------------------------------------------------~~p------ 328 (662)
.+++.++-......+ +.|
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLE 346 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHH
Confidence 776444222211100 000
Q ss_pred ----------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh
Q 038801 329 ----------------------------SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN 380 (662)
Q Consensus 329 ----------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~ 380 (662)
+....-.+.....+.|+.++|.++|+...... ....++.....-++..+.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-GDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-cccccCHHHHHHHHHHHHh
Confidence 11111222223445677777888877764321 1122222333356667766
Q ss_pred cCC---hHHHHHH----------------------HHHHHHC-CC-CC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 381 LGL---SDKAHSI----------------------LDEMNAC-GC-SV--GLGVYVPTLKAYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 381 ~~~---~~~a~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (662)
.+. ...+..+ ++..... +. ++ +...|..+..++.. ++.++|...+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 655 2222222 1112111 11 33 56778888887777 888899998888776
Q ss_pred CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 432 SGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 432 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
. .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|..++++..+.. ..+...
T Consensus 505 ~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l 578 (987)
T PRK09782 505 R--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNAL 578 (987)
T ss_pred h--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHH
Confidence 6 566554444455557899999999999997654 4444567777888999999999999999988752 112223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVD 590 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~ 590 (662)
+..+.....+.|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++.. ...|+. ..+.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---------~l~Pd~~~a~~ 647 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---------ELEPNNSNYQA 647 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HhCCCCHHHHH
Confidence 333344445569999999999999974 6788899999999999999999999999999 455654 6778
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
.+..++...|++++|++.+++..+..+. |+.+..+...+...|+++.|...++++++++|..+
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 8888999999999999999999887665 55666667777778999999999999999998654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-21 Score=185.22 Aligned_cols=462 Identities=12% Similarity=-0.015 Sum_probs=364.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHH
Q 038801 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACN 224 (662)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (662)
...|.+-..+.|++++|++.-..+-... |......-++-..+....+.+....--....+ ....-..+|.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--------~~~q~ae~ys 120 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--------KNPQGAEAYS 120 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhh--------ccchHHHHHH
Confidence 3456777788999999998777665543 23333234455566666666665544443333 1333456888
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHh-HHHHHHHHHh
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVF-YSSLISGYVK 303 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~ 303 (662)
.+-..+-.. |++++|+.+|+.|.+.. +-....|..+..++...|+.+.|.+.|.+..+.+ |+... .+-+....-.
T Consensus 121 n~aN~~ker-g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 121 NLANILKER-GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHh-chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHh
Confidence 888888887 99999999999998864 2356678888899999999999999999988864 76443 3445555666
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.|++.+|...|.+.+...+. =...|+.|...+...|+...|++.|++..++.|.- ...|..|...|...+.
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~-----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f----~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPC-----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF----LDAYINLGNVYKEARI 267 (966)
T ss_pred hcccchhHHHHHHHHhhCCc-----eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc----hHHHhhHHHHHHHHhc
Confidence 89999999999999887432 34689999999999999999999999986543321 2357788899999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 462 (662)
++.|..-|.+..... +....++..+...|...|.+|.|...|++..+. .|+ ...|+.|..++-..|++.+|...|+
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 999999998887754 445678888888999999999999999999986 665 5789999999999999999999999
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038801 463 DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 463 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
+..... +....+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+.-|++.+. +.
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 998875 45556899999999999999999999999876 3444 45789999999999999999999999996 78
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-
Q 038801 542 PND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF- 618 (662)
Q Consensus 542 p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~- 618 (662)
|+. ..|+.+...|-..|+.+.|++.+.+.+ .+.|.- ..++-|...+-.+|++.+|+.-++.+...+++
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAI---------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHH---------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 987 599999999999999999999999999 567765 77888999999999999999999999887776
Q ss_pred CCHHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 619 VDKWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 619 p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
||.+-.++.....-.+...=.+..+++.+
T Consensus 490 pdA~cNllh~lq~vcdw~D~d~~~~kl~s 518 (966)
T KOG4626|consen 490 PDAYCNLLHCLQIVCDWTDYDKRMKKLVS 518 (966)
T ss_pred chhhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 66666554444444454443343334333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-20 Score=177.84 Aligned_cols=445 Identities=11% Similarity=0.074 Sum_probs=351.3
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 038801 71 LETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLG 150 (662)
Q Consensus 71 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 150 (662)
...+.+...+.|++.+|.+.-.-.-+.+. +..--..++.+....++..+-..+. .... .+..+--.++|..+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~--~~~a--~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAG--SLLA--IRKNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhh--hhhh--hhccchHHHHHHHHHH
Confidence 44556667789999999987665544432 1111222333333333211111111 1111 2223344678999999
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH
Q 038801 151 SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC 230 (662)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (662)
.+-..|++++|+.+++.+++.. |.....+.-+..++...|+.+.|..+|.+..+ +.|+.....+-+..+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alq---------lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---------LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---------cCcchhhhhcchhHH
Confidence 9999999999999999999854 56666677788888899999999999999987 789988888777777
Q ss_pred hccCCChhHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChh
Q 038801 231 CYGLQSVSDAEKVIETMSVLGVRPN-ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 308 (662)
.+..|+.++|...|.+..+. .|. ...|+.|-..+-..|+...|.+.|++.++.+ |+ ...|-.|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcch
Confidence 77679999999999998765 343 4567888888889999999999999998854 66 677888999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHH
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 388 (662)
.|...|.+.+..++. ..+.+..|...|-..|+.+-|++.|++...+.|. =...|+.|..++-..|++.+|.
T Consensus 270 ~Avs~Y~rAl~lrpn-----~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~----F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-----HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN----FPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHHHHHHHHHhcCCc-----chhhccceEEEEeccccHHHHHHHHHHHHhcCCC----chHHHhHHHHHHHhccchHHHH
Confidence 999999999887644 6778888999999999999999999998764332 1347899999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 389 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
+.|.+.+... +.-....+.|...|...|++++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.+.-
T Consensus 341 ~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 341 DCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9999998864 344578888999999999999999999998875 454 567899999999999999999999999876
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 038801 468 RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-Q 545 (662)
Q Consensus 468 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~ 545 (662)
. |.-...|+.+...|-..|+.+.|...+.+.+.- .|. ...++.|...|-..|++.+|++-|+..++ ++||. .
T Consensus 418 ~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~---nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 418 K-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI---NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred C-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc---CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 4 344568889999999999999999999998863 444 45788999999999999999999999997 58886 4
Q ss_pred HHHHHHHHH
Q 038801 546 TYLSLINGY 554 (662)
Q Consensus 546 ~~~~li~~~ 554 (662)
.|..++.+.
T Consensus 492 A~cNllh~l 500 (966)
T KOG4626|consen 492 AYCNLLHCL 500 (966)
T ss_pred hhhHHHHHH
Confidence 665555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-20 Score=188.52 Aligned_cols=295 Identities=12% Similarity=0.082 Sum_probs=135.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 038801 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG 344 (662)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 344 (662)
.+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..++..++..... ........+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL-TREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHCC
Confidence 3445566666666666666653 233445666666666666666666665555443100 00001234555555555556
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCCHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVG----LGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~ 420 (662)
++++|.++|+++.+. .+.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 122 ~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 122 LLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 666666666555431 122334444555555555555555555555554432111 112333444445555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+|...|+++.+.. ..+...+..+...+.+.|++++|.++|+++.+.+......++..+..+|...|+.++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 112334444445555555555555555555443211112233444444444444444444444443
Q ss_pred hCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT---AEQYFSVLMMWHEIK 571 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~ 571 (662)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.
T Consensus 277 ~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 277 EE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred Hh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 32 122223344444444444444444444444432 3444444444433332 224444444444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-17 Score=176.21 Aligned_cols=548 Identities=10% Similarity=-0.046 Sum_probs=335.7
Q ss_pred cchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHH
Q 038801 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQT 144 (662)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (662)
+.+...+..+.+.+...|+.++|+..+++..+.. |+-..|..++..+ ++...+...++.+ +...+...+ +
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l---~~~~P~n~~--~ 144 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEEL---LAQQKACDA--V 144 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHH---HHhCCCChh--H
Confidence 3346777888899999999999999999998765 4444444444444 5544455544443 334443332 2
Q ss_pred HHHHHHH--------HHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhh------
Q 038801 145 VHTLLGS--------MRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALD------ 210 (662)
Q Consensus 145 ~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 210 (662)
+..+... |.+. +.|.+.++ .......|...+....+..+|.+.+++++|++.+.++.+....
T Consensus 145 ~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~ 220 (987)
T PRK09782 145 PTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERR 220 (987)
T ss_pred HHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 2222222 3332 33333333 2221111222223333355555556666666666555442110
Q ss_pred -------h----------hcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCC-CCcccHHHHHHHHH-----
Q 038801 211 -------E----------NLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVR-PNESSFGFLAYLYA----- 267 (662)
Q Consensus 211 -------~----------~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~----- 267 (662)
. .....+.+...+..+...+.+. |+.++|.++++++...-.. |...++--++.-+.
T Consensus 221 ~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~-G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~ 299 (987)
T PRK09782 221 QWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYR-GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ 299 (987)
T ss_pred HHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHC-CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh
Confidence 0 0001223455555666666665 6666666666665433211 33333332221111
Q ss_pred -------------------------HcCCHHHHHHHHHH--------HHhcCC--------------------CCcHHhH
Q 038801 268 -------------------------LKGLQEKIVELESL--------MNEFGF--------------------SSQMVFY 294 (662)
Q Consensus 268 -------------------------~~g~~~~a~~~~~~--------~~~~g~--------------------~~~~~~~ 294 (662)
+.+.++.++++... +.-.+. +-+....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l 379 (987)
T PRK09782 300 ALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRL 379 (987)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHH
Confidence 11111111111000 000000 0011111
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCC---HHHHHHH-------------------
Q 038801 295 SSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGN---VKGLANL------------------- 352 (662)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~------------------- 352 (662)
--+.-.....|+.++|.++|.+...... ...++...-+-++..|.+.+. ..++..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 1122223456777888888777777421 222345555677788877766 3333333
Q ss_pred ---HHHHHHhCCCCc-cc--ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 038801 353 ---IIEAQKLEPSGI-VV--DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426 (662)
Q Consensus 353 ---~~~m~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (662)
++..... -+. ++ +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|
T Consensus 458 ~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 458 ADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2222211 112 22 34455666666655 88999999888877653 66554444555667899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 038801 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVE 506 (662)
Q Consensus 427 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 506 (662)
+++... .|+...+..+..++.+.|+.++|...+++..+.. +.....+..+...+...|++++|...+++..+. .
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~ 606 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---A 606 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---C
Confidence 998765 4555566777888999999999999999998875 333333444444555669999999999999874 3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
|+...|..+..++.+.|++++|...|++..+. .|+. ..++.+..++...|++++|+..+++.. ...|+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL---------~l~P~ 675 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAH---------KGLPD 675 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HhCCC
Confidence 45678999999999999999999999999985 5654 688888889999999999999999999 34564
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 586 -HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV-DKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 586 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
...+..+..++...|++++|...+++..+..+.. ++............+++.+.+.+++...++|.
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 4788899999999999999999999998777653 34444455556667788888888887777664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-20 Score=187.13 Aligned_cols=303 Identities=14% Similarity=0.135 Sum_probs=247.1
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCC
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ---MVFYSSLISGYVKLGN 306 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 306 (662)
+... |++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|+
T Consensus 45 ~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLN-EQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhc-CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4455 99999999999999864 33455788888899999999999999999988643222 3568889999999999
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~ 385 (662)
+++|..+|.++++... .+..+++.++..+.+.|++++|.+.++.+.+..+..... ....+..+...+...|+++
T Consensus 123 ~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999988887532 367899999999999999999999999987632211110 0123445777888999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
+|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998864 445678888999999999999999999999976433234678899999999999999999999998
Q ss_pred HcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCC
Q 038801 466 EARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK---AGRLEDAKRTLRRMIFLQFEP 542 (662)
Q Consensus 466 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p 542 (662)
+.. |+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 874 55567788999999999999999999998874 5777788888887775 558999999999999988887
Q ss_pred CHH
Q 038801 543 NDQ 545 (662)
Q Consensus 543 ~~~ 545 (662)
+..
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-16 Score=169.99 Aligned_cols=400 Identities=10% Similarity=-0.032 Sum_probs=272.2
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038801 183 FLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFL 262 (662)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 262 (662)
.....+.+.|++++|++.|++..+ ..|+...|..+-.+|... |++++|++.++...+.. +.+...+..+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~---------~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~-p~~~~a~~~~ 200 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIE---------CKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD-PDYSKALNRR 200 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---------cCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 345566789999999999999976 577877888888888886 99999999999988753 2245577778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCC------------------
Q 038801 263 AYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME------------------ 324 (662)
Q Consensus 263 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------------ 324 (662)
..++...|++++|..-+..+...+-..+.. ...++..+... .+.......++..+..
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 889999999999998887665443111111 11111111110 1111111111111000
Q ss_pred ---------CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCCCCcccc-cchHHHHHHHHHhcCChHHHHHH
Q 038801 325 ---------QSDFSK-ETYCEVVKG---FLQNGNVKGLANLIIEAQKLEPSGIVVD-RSVGFGIISACVNLGLSDKAHSI 390 (662)
Q Consensus 325 ---------~~~p~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 390 (662)
...+.. ..+..+... ....+++++|.+.|++..... ...|+ ...+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~--~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG--KLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 000000 001111100 122467888888888876521 12232 34455667777788999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 038801 391 LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIY 470 (662)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 470 (662)
+++.+... +.+...|..+...+...|++++|...|++..+.. ..+...|..+...+...|++++|...|++..+.. |
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 99888764 3346678888888888999999999999887763 2256788888888899999999999999888775 5
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H----
Q 038801 471 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-Q---- 545 (662)
Q Consensus 471 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~---- 545 (662)
.+...+..+...+.+.|++++|+..+++..+..+. +...|+.+...+...|++++|.+.|++..+. .|+. .
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~ 506 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMN 506 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcccccccc
Confidence 55667777888888899999999999988774322 3457888888889999999999999988864 3321 1
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 546 ---TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 546 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.++.....+...|++++|.+++++.. . +.|+. ..+..+...+.+.|++++|++++++..+..
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl-------~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKAL-------I--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------h--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 12222223334688999999998887 2 34544 567888888999999999999998886553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-16 Score=161.07 Aligned_cols=192 Identities=14% Similarity=0.141 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHh----------
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI-YDLKGSYLTIMTGLME---------- 485 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~---------- 485 (662)
+...+|...+....... .-+...+..+...+.+..++..|.+-|..+.+.-. .+|..+...|...|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 34444444444444321 22333343344455555555555554444443221 2233333333333322
Q ss_pred --cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038801 486 --NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 486 --~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 563 (662)
.+..+.|+++|.++.+. -.-|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+..+|...|+|..|
T Consensus 623 k~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 12345555555555543 122445555555566666666666666666665432 1234555556666666666666
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 564 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+++|+.... +..-.-+..+...|.+++.+.|++.+|.+.+.......+.
T Consensus 700 IqmYe~~lk------kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 700 IQMYENCLK------KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHH------HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 666665552 2222334455556666666666666666666555444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-17 Score=172.06 Aligned_cols=408 Identities=8% Similarity=-0.051 Sum_probs=301.5
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
..++..+.++ |++++|+.+++........+ ...+..++.++...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 46 ~~~~~~~~~~-g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 46 ILFAIACLRK-DETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHhc-CCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3455566676 99999999999998765333 3345555567778999999999999999874 3446778889999999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.|+.++|...|.+.+...+. +...+..+...+...|++++|...++.+....+ +.......+..+...|+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-----~~~~a~~~~~~l~~~g~ 192 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-----NSQIFALHLRTLVLMDKELQAISLARTQAQEVP-----PRGDMIATCLSFLNKSR 192 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHcCC
Confidence 99999999999999886433 677899999999999999999999998865322 22222222344788999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH----HHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS----AFS 459 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~ 459 (662)
+++|...++.+.+..-.++...+..+..++.+.|++++|...|++..+... .+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 999999999988875334555666677889999999999999999998742 256778889999999999986 899
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038801 460 LFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (662)
.|++..+.. |.+...+..+...+...|++++|...+++..+..+- +...+..+..+|.+.|++++|.+.|+++...
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999875 566778999999999999999999999999875332 3456777889999999999999999999975
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH--hCC
Q 038801 540 FEPNDQ-TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ--EMK 616 (662)
Q Consensus 540 ~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~~ 616 (662)
.|+.. .+..+..++...|++++|+..|++..+..+.... .+-......+-.++...+..++......++. +.+
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 423 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSG 423 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHHhcCCccchhhHHHHHhccccc
Confidence 56654 3444567788999999999999999854332110 1111333444445555566655545555552 346
Q ss_pred CCCCHHhHHHHHHH---------HhhhhhhhHHHHHHHHhhHHHHH
Q 038801 617 VFVDKWKYKQAFME---------NHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 617 ~~p~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+.++.|.....+-. ....-+.|++...+..+++..+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (656)
T PRK15174 424 IERDEWERRAKWGYLADNFLLDWLECRGEQADEPMYRLADISHVEQ 469 (656)
T ss_pred CChHHHHHHHHhhHHHHHHHHHHHHhcccchhhHHHHHhhhhhHHH
Confidence 67776655421111 12334556666666666544433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-16 Score=146.06 Aligned_cols=375 Identities=13% Similarity=0.070 Sum_probs=265.6
Q ss_pred CCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHH
Q 038801 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYS 295 (662)
Q Consensus 216 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (662)
.+....+|.+||.++|+- -..+.|.++|++-.....+.+..+||.+|.+-.-. ...++..+|....+.||..|+|
T Consensus 203 ~PKT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKF-SSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 455667999999999998 99999999999998888899999999998765433 2378899999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH-HhCCCCcccc----cc
Q 038801 296 SLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG-LANLIIEAQ-KLEPSGIVVD----RS 369 (662)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~-~~~~~~~~~~----~~ 369 (662)
+++.+..+.|+++.|...+.+.+.+++..|+.|...+|..+|..+++.++..+ |..++.++. .+..+.++|- ..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999999999999888888888888999999999999999999888754 444444432 2333444443 33
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACG----CSVG---LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD 442 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 442 (662)
.|...++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 44568899999999999999887765432 2233 3467778888999999999999999998887788899999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh---hHHHHHHHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH---DWNSIIHAF 519 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~ 519 (662)
.++++..-.|.++-.-++|.+++..|.. ++..+. ++++..+..+ ...|+.. -+.....-+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~~l~-----------eeil~~L~~~-k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHT-----FRSDLR-----------EEILMLLARD-KLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhh-----hhHHHH-----------HHHHHHHhcC-CCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999998853 332222 2223333332 2222211 222222222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG 599 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 599 (662)
+ ..-.+.....-.+|.+. .......+.+.-.+.+.|+.++|-+++.-+.+.-. +-...|......-++++-.+.
T Consensus 501 a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~---~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 501 A-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN---KIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred H-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC---cCCCCcchhhHHHHHHHHHhc
Confidence 1 11122223334455543 33445566666667788888888888887752100 111123333344556666777
Q ss_pred CchHHHHHHHHHHHhCCCC
Q 038801 600 GFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 600 g~~~~A~~~~~~m~~~~~~ 618 (662)
.+...|..+++-|...+..
T Consensus 575 ~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCHHHHHHHHHHHHHcCch
Confidence 8888888888888877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-16 Score=170.27 Aligned_cols=410 Identities=10% Similarity=-0.013 Sum_probs=289.8
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
...-..+.+. |++++|+..|++..+. .|+...|..+..+|.+.|++++|.+.++...+.+ +.+..++..+..+|..
T Consensus 131 k~~G~~~~~~-~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 131 KEKGNKAYRN-KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444556776 9999999999998764 6788888888899999999999999999998864 3347788889999999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HH-hC---------
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA-------------QK-LE--------- 360 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-------------~~-~~--------- 360 (662)
.|++++|..-|........ . +......++..+........+...++.- .. ..
T Consensus 207 lg~~~eA~~~~~~~~~~~~---~--~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG---F--RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC---C--ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 9999999987655443311 1 1111111111111110011111111100 00 00
Q ss_pred -CCCccccc-chHHHHHHH---HHhcCChHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 038801 361 -PSGIVVDR-SVGFGIISA---CVNLGLSDKAHSILDEMNACG-C-SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433 (662)
Q Consensus 361 -~~~~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 433 (662)
.....++. ..+..+... ....+++++|.+.|+...+.+ . +.....++.+...+...|++++|...|++..+.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 00000000 001111100 122468899999999999865 2 334567888889999999999999999999876
Q ss_pred CCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhH
Q 038801 434 LQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512 (662)
Q Consensus 434 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 512 (662)
.|+ ...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. ..+...+
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~ 436 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSH 436 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHH
Confidence 454 5688888999999999999999999998875 5667789999999999999999999999998742 2245678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVD 590 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~ 590 (662)
..+..++.+.|++++|+..|++..+. .|+ ...|+.+...+...|++++|++.|++..+..+.. .+...+. ..++
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~--~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET--KPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc--ccccccHHHHHH
Confidence 88899999999999999999999874 554 5789999999999999999999999998322110 0111111 1122
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
..+..+...|++++|.+++++..+.++... .+..+...+...|+++.|...+++++++.+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 222233457999999999999887765433 4555566667789999999999999888763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-17 Score=174.51 Aligned_cols=337 Identities=11% Similarity=-0.024 Sum_probs=268.7
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHH
Q 038801 256 ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335 (662)
Q Consensus 256 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 335 (662)
..-...++..+.+.|++++|..+++....... -+...+..++.+....|++++|...|.+.+...+. +...|..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-----~~~a~~~ 115 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-----QPEDVLL 115 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-----ChHHHHH
Confidence 33455677888899999999999999988753 33556666667788899999999999998887543 6678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
+...+.+.|++++|.+.++++.++.+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+..
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~ 189 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSG----NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHH
Confidence 999999999999999999998763322 34456678889999999999999999887764 2333444333 34788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH----
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL---- 491 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---- 491 (662)
.|++++|...++.+.+....++...+..+..++...|++++|+..|+++.+.. +.+...+..+...+...|+.++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 99999999999998876433445555666788999999999999999999875 5666788889999999999985
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
|...+++..+..+ .+...+..+...+.+.|++++|...+++..+. .|+. ..+..+..++...|++++|+..++++
T Consensus 269 A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 269 AAEHWRHALQFNS--DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7999999887422 24668899999999999999999999999975 5654 57778889999999999999999999
Q ss_pred HHhhcccCCCCCcccHH-HHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 571 KRKISTDGQKGIKFEHN-LVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
. ...|+.. .+..+..++...|+.++|...+++..+..+.
T Consensus 345 l---------~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 345 A---------REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred H---------HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 8 2345543 3444567788999999999999998776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-15 Score=161.35 Aligned_cols=432 Identities=11% Similarity=0.002 Sum_probs=286.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcc-cHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH-
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFE-LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA- 226 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 226 (662)
+-...+.|+++.|+..|++..+.. |... ... -++.++...|+.++|+..+++. ..|+...+..+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka-----------~~p~n~~~~~ll 106 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERY-----------QSSMNISSRGLA 106 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHh-----------ccCCCCCHHHHH
Confidence 334567777778888777777643 3321 112 5556666677788888777776 23322222222
Q ss_pred --HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 038801 227 --LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304 (662)
Q Consensus 227 --l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 304 (662)
...+... |++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.... |+...+..++..+...
T Consensus 107 alA~ly~~~-gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNE-KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhc
Confidence 3345554 78888888888877653 2234445555667777777777877777776653 5555554444444445
Q ss_pred CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH------HHHHHHH
Q 038801 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG------FGIISAC 378 (662)
Q Consensus 305 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~------~~ll~~~ 378 (662)
++..+|++.+.++++..+. +...+..++.++.+.|-...|+++..+-. .-+.+...-. ..+++.-
T Consensus 183 ~~~~~AL~~~ekll~~~P~-----n~e~~~~~~~~l~~~~~~~~a~~l~~~~p----~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPT-----SEEVLKNHLEILQRNRIVEPALRLAKENP----NLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred chHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHHHHHhCc----cccCHHHHHHHHHHHHHHHHhhc
Confidence 5555577777777776433 56667777777777777777776665421 1122211111 0011110
Q ss_pred -----HhcCC---hHHHHHHHHHHHHC-CCCCCh-h----hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 379 -----VNLGL---SDKAHSILDEMNAC-GCSVGL-G----VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 379 -----~~~~~---~~~a~~~~~~m~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
....+ .+.|..-++.+... +-.|.. . ..--.+-++.+.|++.++++.|+.|...|......+-..+
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 01112 23444555555542 112321 1 2223456778889999999999999988766556677888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcC-----CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------------Ccc
Q 038801 445 IEASITSQDFQSAFSLFRDMREAR-----IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR------------VEV 507 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~p 507 (662)
.++|...+++++|+.+|+++.... .+++......|.-++...+++++|..+++++.+..+ ..|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 999999999999999999987643 123333357888999999999999999999887422 122
Q ss_pred c-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 508 K-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 508 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
| ...+..++..+...|++.+|++.++++... .| |......+...+...|.+.+|.+.++.+. .+.|+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---------~l~P~ 482 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE---------SLAPR 482 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---------hhCCc
Confidence 2 223455677788999999999999999875 45 66788899999999999999999998777 45665
Q ss_pred H-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 H-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
. .+....+.+....|++++|..+.+++.+..+.
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 4 66677888888999999999999999777665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-16 Score=169.79 Aligned_cols=426 Identities=9% Similarity=-0.031 Sum_probs=249.1
Q ss_pred CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC
Q 038801 138 KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK 217 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (662)
...+.....-.+.+....|+.++|+.++...... .|........+..++.+.|++++|.++|++..+. .+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P 80 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EP 80 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3455556666777777777777777777777652 2334434556666777777777777777777652 12
Q ss_pred ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (662)
.+...+..+...+... |++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+.. +.+...+..+
T Consensus 81 ~~~~a~~~la~~l~~~-g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~l 156 (765)
T PRK10049 81 QNDDYQRGLILTLADA-GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEY 156 (765)
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 2344455555666665 77777777777776552 22333 5566666777777777777777777653 2234455556
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSK------ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG 371 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 371 (662)
..++...|..++|++.+..... .|+. .....++......+.
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~-------------------------- 203 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTR-------------------------- 203 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhccccc--------------------------
Confidence 6666677777777766433222 1110 001111111110000
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHHC-CCCCChh-hH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CChhhH
Q 038801 372 FGIISACVNLGLS---DKAHSILDEMNAC-GCSVGLG-VY----VPTLKAYCKEHRTAEATQLVMDISSSGLQ-LDVGNY 441 (662)
Q Consensus 372 ~~ll~~~~~~~~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~ 441 (662)
...+++ ++|.+.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.. |+. ..
T Consensus 204 -------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 204 -------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred -------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence 111122 4556666666543 1122111 11 11122344556777777777776665421 221 11
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----------Cccc
Q 038801 442 DALIEASITSQDFQSAFSLFRDMREARIYD---LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR----------VEVK 508 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~ 508 (662)
..+..+|...|++++|+.+|+++.+..... .......+..++...|++++|..+++++....+ ..|+
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 123556667777777777777665543111 112344455566677777777777776665421 1122
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 509 ---THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 509 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
...+..+...+...|+.++|+++++++... .| +...+..+...+...|++++|++.++++. .+.|
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al---------~l~P 424 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAE---------VLEP 424 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------hhCC
Confidence 224456677788889999999999888875 45 44677888888888899999999998888 4556
Q ss_pred cH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038801 585 EH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM 629 (662)
Q Consensus 585 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 629 (662)
+. ..+......+.+.|++++|..+++++.+..+.-.....+-...
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 64 5566666678888899999999988877665533333333333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-15 Score=155.22 Aligned_cols=545 Identities=10% Similarity=-0.014 Sum_probs=387.8
Q ss_pred HHHHHH--HhhCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 73 TNLHKS--LLTNNTDEAWKSFKSLTANSL--FPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 73 ~~l~~~--~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
.+..+. ...+++..|+.+|.......+ .||+ .-.+-.+|.+.+..+.+..+|..+ ++..| -++.++..|
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ra---lqLdp--~~v~alv~L 239 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERA---LQLDP--TCVSALVAL 239 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHH---HhcCh--hhHHHHHHH
Confidence 344444 347899999999999765443 3443 233346777888877777777655 45555 344444444
Q ss_pred HHHHH---hcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 149 LGSMR---NANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 149 l~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
...-. ....+..++.++...-.. .+.+....+.|...|.-.|++..+..+...+..... .-.--...|-.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~ 312 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQ 312 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHH
Confidence 33333 333456677777666553 356666778888888889999999999888876310 00112235777
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSF--GFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
+-++|... |++++|...|.+-.+. .+|.+++ .-+...+...|+++.+...|+...+.. +-+..+...|...|..
T Consensus 313 ~gRs~Ha~-Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 313 LGRSYHAQ-GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHhh-ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHh
Confidence 88888887 9999999999887654 4555444 346678889999999999999998874 4456777778888877
Q ss_pred cC----ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCcccccchHHHHHHHH
Q 038801 304 LG----NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQ-KLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 304 ~g----~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~~~~ll~~~ 378 (662)
.+ ..+.|..++.+.++.... |...|-.+...+-...-+.. +..|.... .+...+..+.....|.+....
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~-----d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPV-----DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 75 567777777777766433 88888888877766555544 76666554 222245556677899999999
Q ss_pred HhcCChHHHHHHHHHHHHC---CCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNAC---GCSVGL------GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVG-NYDALIEAS 448 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~ 448 (662)
...|+++.|...|...... ...++. .+--.+...+-..++.+.|.+.|..+.+. .|.-+ .|-.+....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHH
Confidence 9999999999999988765 122333 22333566677788999999999999987 56544 444444333
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh-------
Q 038801 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK------- 521 (662)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~------- 521 (662)
-..+...+|...+++....+ ..+...+..+...+.+...+..|.+-|..+..+....+|.++.-+|.+.|.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 34578889999999888765 3444466666668888888888888787777765555677666666665542
Q ss_pred -----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 522 -----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 522 -----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
.+..++|+++|.+.++.. .-|...-|-+.-+++..|++.+|..+|.++++ ... -...+|--+..+|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE-------a~~-~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVRE-------ATS-DFEDVWLNLAHCY 690 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHH-------HHh-hCCceeeeHHHHH
Confidence 356899999999999753 33667888888889999999999999999994 222 2334666788889
Q ss_pred HccCchHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 597 VKGGFFDAVMQVVEKSQEMKV---FVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 597 ~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
..+|++-.|+++|+.+.+.-. .+++..++..+....|.+.++......++.+-|.+-
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 999999999999999876655 466888888888888999999999888888877665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=174.93 Aligned_cols=404 Identities=12% Similarity=0.060 Sum_probs=297.7
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
.-.+...... |+.++|++++.+..... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++..
T Consensus 19 ~d~~~ia~~~-g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWA-GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444555566 99999999999997522 3444468888899999999999999999988864 3456777888899999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.|+.++|...+.+.+...+. +.. +..+..++...|+.++|+..++++.+..|. +...+..+..++...+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-----~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~----~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-----KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ----TQQYPTEYVQALRNNRL 165 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-----CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCC
Confidence 99999999999888887433 566 888999999999999999999999764332 33444557777888899
Q ss_pred hHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCChh-hH----HH
Q 038801 384 SDKAHSILDEMNACGCSVGL------GVYVPTLKAYC-----KEHRT---AEATQLVMDISSS-GLQLDVG-NY----DA 443 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~ 443 (662)
.+.|.+.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998876654 2221 11222222222 22334 7888899988864 2233321 11 11
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--chhhHHHHHHHHH
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIY-DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV--KTHDWNSIIHAFC 520 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~ 520 (662)
.+.++...|++++|+..|+++.+.+.+ |+ .....+...+...|++++|+.+|+++.+..+..+ ....+..+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 134556779999999999999987632 22 1233357789999999999999999876533221 1244666777889
Q ss_pred hcCCHHHHHHHHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-c
Q 038801 521 KAGRLEDAKRTLRRMIFLQ-----------FEPND---QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-E 585 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~ 585 (662)
..|++++|.++++.+.+.. -.|+. ..+..+...+...|+.++|+++++++.. ..| +
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---------~~P~n 392 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---------NAPGN 392 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCC
Confidence 9999999999999998752 11232 3456677788899999999999999992 334 3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...+..+...+...|++++|++.+++..+..+. +.............|+++.|+..++++++.+|.++
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 478888889999999999999999999877654 33444445556667999999999999999998876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-14 Score=151.79 Aligned_cols=441 Identities=11% Similarity=0.005 Sum_probs=287.6
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
.-...+.|+++.|++.|++..+..+.-.+..+ .++..+...|+...+...++... .+.......+..+...+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHH
Confidence 33456789999999999999876643222334 88888888898888877776652 3333444455555678889
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
.|++++|+++++++.+.. |.+......+...+...++.++|++.++++.. ..|+...+-.++..+...
T Consensus 115 ~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---------~dp~~~~~l~layL~~~~- 182 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAE---------RDPTVQNYMTLSYLNRAT- 182 (822)
T ss_pred cCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---------cCcchHHHHHHHHHHHhc-
Confidence 999999999999999864 55566666778889999999999999999965 577766664444444333
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHh------HHHHHHHH---H--h
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVF------YSSLISGY---V--K 303 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~------~~~li~~~---~--~ 303 (662)
++..+|++.++++.+.. +-+...+..++.++.+.|-...|.++...-.+. +.+...- ...+++.- . .
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 66666999999998874 334556677888999999988888776543211 1111100 00111100 0 0
Q ss_pred cC---ChhhHHHHHHHHHcCCCCCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHH
Q 038801 304 LG---NLESASRTILLCLGGGNMEQSDFS-K----ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGII 375 (662)
Q Consensus 304 ~g---~~~~A~~~~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll 375 (662)
.. -.|.|+.-+..++... +..|. . ...--.+.++...|++.++++.|+.+.. .+.+....+-..+.
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~---~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~---~~~~~P~y~~~a~a 334 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRW---GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA---EGYKMPDYARRWAA 334 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhc---cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh---cCCCCCHHHHHHHH
Confidence 11 2234444444445432 11121 1 1223445677778888888888888765 55443444556678
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CC--C
Q 038801 376 SACVNLGLSDKAHSILDEMNACG-----CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL-----------QL--D 437 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~~--~ 437 (662)
++|...+.+++|..+|+.+.... ..++......|.-+|...+++++|..+++.+.+.-. .| |
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 88888888888888888876542 123344456777788888888888888888876311 11 1
Q ss_pred h-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHH
Q 038801 438 V-GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSI 515 (662)
Q Consensus 438 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 515 (662)
- ..+..++..+...|+..+|++.++++.... |-+......+...+...|.+.+|+..++..... .| +..+....
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l---~P~~~~~~~~~ 490 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL---APRSLILERAQ 490 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---CCccHHHHHHH
Confidence 1 123445566777788888888888876654 666667777777777777777777777655543 23 24455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY 547 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 547 (662)
+.++...|++.+|..+.+...+. .|+....
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 67777777777777777777763 5655433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-14 Score=134.79 Aligned_cols=322 Identities=16% Similarity=0.156 Sum_probs=215.4
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH--cCCHHHH-HHHHHHHHhcCCCCcHHhHHHH
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL--KGLQEKI-VELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g~~~~a-~~~~~~~~~~g~~~~~~~~~~l 297 (662)
.+=|.++.... + |.+..+.-+|+.|...|++.+...--.|++..+- ..++--| .+-|-.|.+.| +.+..+|
T Consensus 117 ~~E~nL~kmIS-~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKMIS-S-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred cchhHHHHHHh-h-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 35566666554 3 8999999999999999988887766666654442 2332222 23344454444 2222232
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
+.|++.+ ++++.+.. +..+|..||.++|+--..+.|.++|++... ...+.+..+||.+|.+
T Consensus 191 -----K~G~vAd---L~~E~~PK--------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~---~k~kv~~~aFN~lI~~ 251 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPK--------TDETVSIMIAGLCKFSSLERARELYKEHRA---AKGKVYREAFNGLIGA 251 (625)
T ss_pred -----ccccHHH---HHHhhcCC--------CchhHHHHHHHHHHHHhHHHHHHHHHHHHH---hhheeeHHhhhhhhhH
Confidence 3444433 45666665 677888888888888888888888888766 6667777788887766
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH----HHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA----TQLVMDISSSGLQLDVGNYDALIEASITSQD 453 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 453 (662)
-.- ....++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++
T Consensus 252 ~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 252 SSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 433 22367788888888888888888888888888876654 4567778888888888888888888888776
Q ss_pred HHH-HHHHHHHHHH----cCC----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---Cccc---hhhHHHHHHH
Q 038801 454 FQS-AFSLFRDMRE----ARI----YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR---VEVK---THDWNSIIHA 518 (662)
Q Consensus 454 ~~~-A~~~~~~m~~----~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~p~---~~~~~~li~~ 518 (662)
..+ |..++.++.. +.. +.+...|..-+..|....+.+.|.++..-+....+ +.|+ ..-|..+...
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 644 3344444432 222 22334456666777777777777776655543211 1122 2235566667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.|+....+.-...|+.|.-.-+.|+..+...++++....|.++-.-++|.+++
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK 460 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 77777788888888888877677777777777787777777777777777766
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-14 Score=132.24 Aligned_cols=478 Identities=12% Similarity=0.063 Sum_probs=313.7
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
++..++..|...|.......+|+..++-++++..+|..-....-+...+.+.+.+.+|++++.-... ..|+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald---------qvps 269 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD---------QVPS 269 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh---------hccc
Confidence 5666777788888888899999999999999988888777666778888899999999999887755 2333
Q ss_pred H------HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 038801 220 I------YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSS---- 289 (662)
Q Consensus 220 ~------~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~---- 289 (662)
+ ...|.+--.+.+. |+++.|+.-|+...+. .|+-.+--.|+-++.-.|+-++..+.|..|......+
T Consensus 270 ink~~rikil~nigvtfiq~-gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 270 INKDMRIKILNNIGVTFIQA-GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred cchhhHHHHHhhcCeeEEec-ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 2 2334444456776 9999999999998764 5777665556656667899999999999998754333
Q ss_pred --------cHHhHHHHH-----HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHH---HH----------H--------H
Q 038801 290 --------QMVFYSSLI-----SGYVKLGNLESASRTILLCLGGGNMEQSDFSKE---TY----------C--------E 335 (662)
Q Consensus 290 --------~~~~~~~li-----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~---~~----------~--------~ 335 (662)
+....+.-| .-+-+..+. .|++.+-...+- ..+-+.|+-. -| . .
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka-~aek~i~ta~ki-iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKA-DAEKAIITAAKI-IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhh-hHHHHHHHHHHH-hccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 322222222 222222111 122111111110 0011222211 01 0 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACV--NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
-...+.++|+++.|++++.-..+ ..-+.-+..-+.|...+. --.++..|.+.-+..+... .-+......-.+..
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIA 500 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCcee
Confidence 12357799999999999887654 211111111222222222 2346777777766665443 22333322223344
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH---HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALI---EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
...|++++|.+.|.+.... |..+-.+|. -.+-..|++++|++.|-++-.- +..+.....-+...|-...+..
T Consensus 501 f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred eecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 5679999999999999864 444333332 3456789999999999876543 2344566777778888889999
Q ss_pred HHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 491 LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
.|++++.+... -+.-|+.+...|...|-+.|+-..|.+.+-+--.- +.-|..+..-|...|....-+++++.+|++.
T Consensus 576 qaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999988765 34556788999999999999999998877654432 3346788888999999999999999999988
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHH-ccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhh--hhhHHHHHHHHh
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALV-KGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKL--KVAKLRKRNFKK 647 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~--~~a~~~~~~~~~ 647 (662)
. -++|+..-|..++..|. +.|++..|+++++.....= |.....+.-..+..|++ ..+++..+++.+
T Consensus 653 a---------liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--pedldclkflvri~~dlgl~d~key~~klek 721 (840)
T KOG2003|consen 653 A---------LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--PEDLDCLKFLVRIAGDLGLKDAKEYADKLEK 721 (840)
T ss_pred H---------hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--ccchHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 8 68999999999988776 6999999999999986543 33333333333333443 345555555555
Q ss_pred hHHHHHH
Q 038801 648 MEALIAF 654 (662)
Q Consensus 648 l~p~~~~ 654 (662)
.|..+.+
T Consensus 722 ~eki~ei 728 (840)
T KOG2003|consen 722 AEKIKEI 728 (840)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-12 Score=124.89 Aligned_cols=470 Identities=13% Similarity=0.037 Sum_probs=358.5
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHH
Q 038801 150 GSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEG 229 (662)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (662)
++.......+.|.-++.+..+. .|.+ .-|..++++...++.|.+++.+..+. ++-+...|-+.-..
T Consensus 384 KaAVelE~~~darilL~rAvec--cp~s----~dLwlAlarLetYenAkkvLNkaRe~--------iptd~~IWitaa~L 449 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC--CPQS----MDLWLALARLETYENAKKVLNKAREI--------IPTDREIWITAAKL 449 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh--ccch----HHHHHHHHHHHHHHHHHHHHHHHHhh--------CCCChhHHHHHHHH
Confidence 3334444455566666666552 2222 22555667788899999999998763 66677777666655
Q ss_pred HhccCCChhHHHHHHHH----HHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc--HHhHHHHHHHHHh
Q 038801 230 CCYGLQSVSDAEKVIET----MSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ--MVFYSSLISGYVK 303 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~----m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~ 303 (662)
--.+ |+.+.+.++.++ +...|+..+...|-.=...|-..|.+-.+..+.......|+.-. ..+|..-...|.+
T Consensus 450 EE~n-gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 450 EEAN-GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHhc-CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 5565 999998888766 45578888888888878888889999999999999888886443 5688888899999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.+.++-|..+|...++-.+. +...|...+..--..|..+....+|++... .++-....+.......-..|+
T Consensus 529 ~~~~~carAVya~alqvfp~-----k~slWlra~~~ek~hgt~Esl~Allqkav~----~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPC-----KKSLWLRAAMFEKSHGTRESLEALLQKAVE----QCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred cchHHHHHHHHHHHHhhccc-----hhHHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHhcCC
Confidence 99999999999888876432 677888888877888999999999998864 222223333344566677899
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (662)
+..|..++.+..+.. +.+...|-+-++....+..++.|..+|.+.... .|+...|.--+..---.|+.++|.+++++
T Consensus 600 v~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 600 VPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 999999999998875 457889999999999999999999999998875 66777777666666677899999999988
Q ss_pred HHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038801 464 MREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543 (662)
Q Consensus 464 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 543 (662)
..+.- +.-...|..+.+.+-+.++++.|.+.|..-.+. +.-.+-.|-.|...--+.|.+-.|..++++..-.+ .-|
T Consensus 677 ~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 677 ALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 88763 444567777888888899999998888776553 22234568888888888889999999999888763 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccC----------------------CCCCcccHHHHHHHHHHHHccCc
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG----------------------QKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------------~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
...|-..|+.=.+.|+.+.|..+..+..+.++..+ -...+-|+.....+...+....+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 57888899999999999999888888777666433 11223345566667777888899
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHH
Q 038801 602 FDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 602 ~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p 650 (662)
++.|.+.|.+....++. -|.|-.++.+...||.-+.-+.++.+...-||
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 99999999999877776 57999999999999988888888877776665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-12 Score=127.77 Aligned_cols=369 Identities=12% Similarity=0.067 Sum_probs=224.5
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH
Q 038801 151 SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC 230 (662)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (662)
.+...|++++|..++.++++.. |.....+..|...|...|+.+++...+-.+..+ .+.|...|-.+-...
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLADLS 217 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHH
Confidence 3334477778887777777743 445555666777777777777777776666543 333445666666666
Q ss_pred hccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHH----hHHHHHHHHHhcCC
Q 038801 231 CYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMV----FYSSLISGYVKLGN 306 (662)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~ 306 (662)
.+. |++++|.-+|.+..+.. +++...+--=...|-+.|+...|..-|.++....-+.|.. .--..+..|...++
T Consensus 218 ~~~-~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQL-GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred Hhc-ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 665 77777877777777653 3333333334456777777777777777777654211211 12223455666666
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------h--CCC
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK----------------------L--EPS 362 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------------------~--~~~ 362 (662)
.+.|.+.++..+... +-.-+...++.++..|.+...++.|......+.. . .+.
T Consensus 296 ~e~a~~~le~~~s~~---~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 296 RERAAKALEGALSKE---KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred HHHHHHHHHHHHhhc---cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 677777777666632 2222455667777777777777777777766654 0 011
Q ss_pred CcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC--SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 363 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
+..++..+ --++-++.+....+....+...+....+ ..+...|.-+..+|...|++..|..+|..+...-..-+...
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 12222222 1233344455555555556666666553 33456777777788888888888888887776644445667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCccchhhHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED-------PRVEVKTHDWN 513 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~p~~~~~~ 513 (662)
|-.+..+|...|.+++|.+.|+..+... |.+...-..|-..+.+.|+.++|.+.+..+..- ....|+...--
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 7777778888888888888888777664 555556666667777778888877777774321 12334433334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
.....+.+.|+.++=..+-..|+
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455566666665444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-11 Score=120.95 Aligned_cols=515 Identities=10% Similarity=0.029 Sum_probs=335.6
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 69 TSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
...-..-..+..+|+.++|..++.+..+..+. ....|.+|-..+...|+ ..+++.... ...+-.+-|...|-.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd---~eK~l~~~l--lAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGD---IEKALNFWL--LAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHccc---HHHHHHHHH--HHHhcCCCChHHHHHH
Confidence 33333333445569999999999999987765 56779999999999997 455554333 3344455566889999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCc------cHHH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKP------NIYA 222 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~ 222 (662)
.......|.+++|.-.|.+.++.. |++..+..--..+|-+.|+...|.+.|.++.++ .| ....
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---------~p~~d~er~~d~ 282 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL---------DPPVDIERIEDL 282 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---------CCchhHHHHHHH
Confidence 999999999999999999999854 666666666778888999999999999999874 33 1223
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Q 038801 223 CNAALEGCCYGLQSVSDAEKVIETMSVL-GVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG--------------- 286 (662)
Q Consensus 223 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g--------------- 286 (662)
--.+++.+... ++-+.|++.++..... +-.-+...+++++..+.+...++.+......+....
T Consensus 283 i~~~~~~~~~~-~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 283 IRRVAHYFITH-NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 33456667776 7779999998887652 234566678899999999999999888877776621
Q ss_pred ------------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038801 287 ------------FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLII 354 (662)
Q Consensus 287 ------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 354 (662)
+.++..+. .++-++......+...-+ ...+..... ...-+...|..+..+|.+.|++++|+.+|.
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~l-l~~l~~~n~-~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEAL-LHFLVEDNV-WVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHH-HHHHHHhcC-ChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22333331 122233333333322222 333333211 122356788999999999999999999999
Q ss_pred HHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH----
Q 038801 355 EAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS---- 430 (662)
Q Consensus 355 ~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 430 (662)
.+.. ...--+...|..+..++-..|..++|.+.|+..+... +.+...-..|-..+-+.|+.++|.+.++.+.
T Consensus 439 ~i~~---~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 439 PITN---REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHhc---CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 9865 2233346688889999999999999999999999874 5566677778888999999999999999864
Q ss_pred ----hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----------------------CCCcccHHHHHHHHH
Q 038801 431 ----SSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI----------------------YDLKGSYLTIMTGLM 484 (662)
Q Consensus 431 ----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------------~~~~~~~~~ll~~~~ 484 (662)
..+..|+........+.+.+.|+.++=..+-..|+.... +-...+...++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 222334444555566778888988876666555544211 111112222223333
Q ss_pred hcCCHHHHHHHHHH-----HhhCCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH---H-HHHHHH
Q 038801 485 ENHRPELMAAFLDE-----VVEDPRVEVK--THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQ---T-YLSLIN 552 (662)
Q Consensus 485 ~~~~~~~a~~~~~~-----~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~---~-~~~li~ 552 (662)
+.++.....+-... .....++..+ -..+.-++.++++.+++++|+.+...+....+.- +.. . =...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 33322111111110 0111122222 1245667888999999999999998888753221 221 2 234556
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
++...+++..|...++.|...+.- ...|.. ..|+.....+.+.|+-.--.+++...
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~----~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~ 731 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQF----YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL 731 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667789999999999999843221 112222 44554555555555544444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-10 Score=115.01 Aligned_cols=487 Identities=11% Similarity=0.065 Sum_probs=323.8
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHh----cCCCCCcccHHHH
Q 038801 108 SLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFK----NRYFMPFELWGGF 183 (662)
Q Consensus 108 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 183 (662)
.|.-++++...++.+.+++..+ ...++-+..++.+..+.=-.+|+.+...+++++-+. .|+.-+...+..
T Consensus 411 dLwlAlarLetYenAkkvLNka-----Re~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~- 484 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKA-----REIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK- 484 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH-
Confidence 3444555555556666666554 334445556665555555566666666666655432 333322222221
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038801 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLA 263 (662)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 263 (662)
=...|-+.|..-.+..+......++.++ .--..||+.--..|.+. +.++-|..+|....+-- +-+...|..+.
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEe-----ed~~~tw~~da~~~~k~-~~~~carAVya~alqvf-p~k~slWlra~ 557 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEE-----EDRKSTWLDDAQSCEKR-PAIECARAVYAHALQVF-PCKKSLWLRAA 557 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhcccc-----chhHhHHhhhHHHHHhc-chHHHHHHHHHHHHhhc-cchhHHHHHHH
Confidence 2333445566655666655555543321 11234677767777776 77777888877766531 33344555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc
Q 038801 264 YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN 343 (662)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 343 (662)
..--..|..+....+++++...- +-....|-....-+...|++..|..++.+.++..+. +...|-..++....+
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en 631 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhcc
Confidence 55556677888888888877762 334455556666777778888888887777776432 667888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 038801 344 GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423 (662)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (662)
.+++.|..+|.+.. ...|+..+|..-+..---.++.++|.+++++.++. ++.-...|-.+...+-+.++++.|.
T Consensus 632 ~e~eraR~llakar-----~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 632 DELERARDLLAKAR-----SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccHHHHHHHHHHHh-----ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888764 45566667766666566668888888888887775 3444567777777888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 038801 424 QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503 (662)
Q Consensus 424 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 503 (662)
+.|..=.+. +.-.+..|-.+...=-+.|.+-+|..++++.+-++ |.+...|...|..=.+.|..+.|..++.+..++
T Consensus 706 ~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 706 EAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred HHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 887765544 22245667767666677788888888888887776 666778888888888888888888888887775
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 504 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
+.-+...|..-|....+.++-......+++. .-|....-.+...|-...++++|.+.|++.. .+.
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav---------k~d 847 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV---------KKD 847 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---------ccC
Confidence 3345566777777777666655555444433 4466666677777788899999999999999 455
Q ss_pred ccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHH
Q 038801 584 FEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 584 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
||. .+|..+...+.+.|.-+.-.++++++....+.. --..|..+++++...+-.
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h-----G~~W~avSK~i~n~~~t~ 902 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH-----GELWQAVSKDIKNWRKTP 902 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-----CcHHHHHhhhHHhccCCH
Confidence 665 788888888999999999999999987766542 123345555555544433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-11 Score=112.55 Aligned_cols=450 Identities=9% Similarity=0.008 Sum_probs=323.7
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
.+...+-.....=...+++..|..+|++.+... ..+.+.....+.+=-++..+..|..++++...+ -|-
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---------lPR 139 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---------LPR 139 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---------cch
Confidence 344455444555556778888999999998754 344444555566666889999999999999873 444
Q ss_pred HH-HHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 220 IY-ACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 220 ~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
+. .|--.+..--. +|++..|.++|+...+ ..|+...|.+.|+-=.+...++.|..+++..+-. .|++..|-...
T Consensus 140 VdqlWyKY~ymEE~-LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikya 214 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEM-LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYA 214 (677)
T ss_pred HHHHHHHHHHHHHH-hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHH
Confidence 33 44444433333 4999999999999876 5899999999999999999999999999998764 59999999998
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc--cchHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD--RSVGFGIIS 376 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~~~~ll~ 376 (662)
..=.++|.+..|..+|...++.-.. -..+...+.+...--.++..++.|.-+|.-... .++-+ ...|.....
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~--d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld----~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGD--DEEAEILFVAFAEFEERQKEYERARFIYKYALD----HIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcccHHHHHHHHHH
Confidence 8889999999999999888876321 001223344444444467778888888887764 23222 223333333
Q ss_pred HHHhcCChHHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHH
Q 038801 377 ACVNLGLSDKAHSI--------LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV--GNYDALIE 446 (662)
Q Consensus 377 ~~~~~~~~~~a~~~--------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~ 446 (662)
---+-|+....... |+.+...+ +.|-.+|--.++.-...|+.+...++|++.... +.|-. ..|...|-
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 33344554433322 34445443 566678888888888889999999999999876 33311 12222221
Q ss_pred --------HHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 447 --------ASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL----MENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 447 --------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.=....+.+.+.++|+..++ -+|....||..+=-.| .+..++..|.+++...+ |.-|...+|..
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~ 442 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHH
Confidence 11346789999999999988 3677777777665544 45778899999998876 56777889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFL 593 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~ 593 (662)
.|..-.+.++++.+..++++.++- .| |..+|.-....=...|+.+.|..+|+-+.. +..+......|.+.|
T Consensus 443 YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~------qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAIS------QPALDMPELLWKAYI 514 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc------CcccccHHHHHHHhh
Confidence 999999999999999999999985 45 557887777766778999999999998882 223344457788888
Q ss_pred HHHHccCchHHHHHHHHHHHhCCCCCCHHhHH
Q 038801 594 YALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK 625 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 625 (662)
..-...|.++.|..+++.+.+.......|-..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 88889999999999999998776655566554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-12 Score=121.24 Aligned_cols=495 Identities=10% Similarity=0.030 Sum_probs=292.1
Q ss_pred HHHHhhCChhHHHHHHHHhhhCCCCCChhhHHH-HHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 76 HKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNS-LIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
..|....-..+|+..|+-+.+....|+...... +-..+.+...+..+.+.++..+.....-.........+.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 334444455667777776666555555433211 2222333333333333333222111111111233455666666789
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhh-----cCCCCccHHHHHHHHH-
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDEN-----LDFMKPNIYACNAALE- 228 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ll~- 228 (662)
.|.++.|+..|+...+.. |.....+++++..++ .|+-++..+.|++|..+..+-. ...-.|+....|-.|.
T Consensus 289 ~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~-i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEA--PNFIAALNLIICAFA-IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred cccchhhHhhHHHHHHhC--ccHHhhhhhhhhhee-cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 999999999999998853 566666777776664 8999999999999987643210 0112345444443332
Q ss_pred ----HHhcc-CCChhHHHHHHHHHHhcCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 038801 229 ----GCCYG-LQSVSDAEKVIETMSVLGVRPNESS-FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYV 302 (662)
Q Consensus 229 ----~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 302 (662)
.+-+. ..+.++++-.--++..--+.||-.. |...+..+-.....+.| .+... .-.--|.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la-------------~dlei--~ka~~~l 430 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA-------------IDLEI--NKAGELL 430 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh-------------hhhhh--hHHHHHH
Confidence 22111 0111222222222222222222110 11111111111111111 11111 1123467
Q ss_pred hcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYC-EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
+.|+++.|.++ .+.++.... ...+...-| +++.-+....++..|.++-+..... -..|......-.+.....
T Consensus 431 k~~d~~~aiei-lkv~~~kdn--k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 431 KNGDIEGAIEI-LKVFEKKDN--KTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFAN 503 (840)
T ss_pred hccCHHHHHHH-HHHHHhccc--hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeeec
Confidence 89999999998 455555311 001111111 1222222244566676666554321 111111111122334456
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
|++++|.+.|++.+...-.-....||. .-.+-..|++++|++.|-++... +..+......+...|-...+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 899999999999988764334444443 33567789999999999887643 1236667777788888889999999998
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
.+.... +|.|+.....|...|-+.|+-..|.+.+-.--+- ..-+..+...|..-|....-+++|...|++..- +.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 766544 5788889999999999999999998887665443 233566777788888899999999999998775 68
Q ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 542 PNDQTYLSLINGYVT-AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 542 p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
|+..-|..++..|.+ .|++.+|++++++..+ .+.-|......|++.+...|.. ++.++-++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--------kfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--------KFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--------hCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 999999999887765 6999999999999994 4555777888888888777653 34444433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-11 Score=123.30 Aligned_cols=224 Identities=16% Similarity=0.070 Sum_probs=143.8
Q ss_pred cccccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCC
Q 038801 61 QTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLL 140 (662)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (662)
..+..|+.++|..+|..|+..|+.+.|- +|..|.-.+..-....++.++.+-...++. +++..|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~---------------Enpkep 81 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDA---------------ENPKEP 81 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccc---------------cCCCCC
Confidence 4566788899999999999999998888 888887666555666677777776666653 334457
Q ss_pred ChHHHHHHHHHHHhcCCchhHHHHHHH-HHh-------cCCCCCcc-------------cHHHHHHHHhhcCCcHHHHHH
Q 038801 141 DFQTVHTLLGSMRNANTAAPAFALVKC-MFK-------NRYFMPFE-------------LWGGFLVDICRKNSNFVAFLK 199 (662)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~-------~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~ 199 (662)
..++|..|+.+|...|++.. ++..++ |.. .|...+.. .-....+....-.|-++.+++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887655 222222 221 11100000 000001111111233333333
Q ss_pred HHHHHHHhhhh------------------------hhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCC
Q 038801 200 VFEECCRIALD------------------------ENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPN 255 (662)
Q Consensus 200 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 255 (662)
++..+...... ....+ .|+..+|.+++.....+ |+.+.|..++.+|++.|++.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaa-g~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAA-GDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhc-CchhhHHHHHHHHHHcCCCcc
Confidence 33222111000 01122 57888888888888877 888888888888888888888
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 038801 256 ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN 306 (662)
Q Consensus 256 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (662)
..-|-.|+-+ .++...+..++..|...|+.|+..|+...+..+.+.|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8777666655 77778888888888888888888888887777777555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.6e-09 Score=98.01 Aligned_cols=458 Identities=8% Similarity=0.038 Sum_probs=316.4
Q ss_pred hCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchh
Q 038801 81 TNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAP 160 (662)
Q Consensus 81 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 160 (662)
+++...|..+|+..+..... +...|-.-+..=.+.+....+..+++..+..+.. .|. .+-..+..=-..|++..
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR----Vdq-lWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR----VDQ-LWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----HHH-HHHHHHHHHHHhcccHH
Confidence 56667788888888765433 5556666677777777777777777665432211 111 12222333345678888
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHH
Q 038801 161 AFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDA 240 (662)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 240 (662)
|.++|++-.+ ..|+... ....+.+=.+-...+.|..++++..- ..|++.+|--...---+. |++..|
T Consensus 160 aRqiferW~~--w~P~eqa-W~sfI~fElRykeieraR~IYerfV~---------~HP~v~~wikyarFE~k~-g~~~~a 226 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQA-WLSFIKFELRYKEIERARSIYERFVL---------VHPKVSNWIKYARFEEKH-GNVALA 226 (677)
T ss_pred HHHHHHHHHc--CCCcHHH-HHHHHHHHHHhhHHHHHHHHHHHHhe---------ecccHHHHHHHHHHHHhc-CcHHHH
Confidence 8888888776 3344444 45566777778888888888888754 678888887777766776 888888
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCc--HHhHHHHHHHHHhcCChhhHHHH-
Q 038801 241 EKVIETMSVLGVRPNESSFGFLAYLYA----LKGLQEKIVELESLMNEFGFSSQ--MVFYSSLISGYVKLGNLESASRT- 313 (662)
Q Consensus 241 ~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~- 313 (662)
..+|+...+. --|...-..++.+++ +...++.|.-+|+-..+. ++.+ ...|..+...=-+.|+.....++
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 8888877553 112222233333443 556778888888887775 2333 44555555444445554433332
Q ss_pred -------HHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc-c------hHHHHHHHH-
Q 038801 314 -------ILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR-S------VGFGIISAC- 378 (662)
Q Consensus 314 -------~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~------~~~~ll~~~- 378 (662)
|++.+...+. |-.+|-..++.-...|+.+...++|++... +++|-. . +|.-+=-+|
T Consensus 304 v~KRk~qYE~~v~~np~-----nYDsWfdylrL~e~~g~~~~Ire~yErAIa----nvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPY-----NYDSWFDYLRLEESVGDKDRIRETYERAIA----NVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhhhHHHHHHHhCCC-----CchHHHHHHHHHHhcCCHHHHHHHHHHHHc----cCCchhHHHHHHHHHHHHHHHHHH
Confidence 4445554322 677888888888889999999999999874 555521 1 111111111
Q ss_pred --HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 379 --VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC----KEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 379 --~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
....+++.+.++|+..++. ++....|+.-+=-.|+ ++.++..|.+++..... .-|-..++...|..=.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 2467889999999998883 4556667666544444 67899999999988774 4788899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 038801 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTL 532 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (662)
++|.+..+|++.++-+ |.+..+|......=...|+.+.|..+|+-.+..+...-....|.+.|.--...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999987 777788888888888899999999999999887555545567888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHhhc
Q 038801 533 RRMIFLQFEPNDQTYLSLINGYV-----TAE-----------QYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 533 ~~m~~~~~~p~~~~~~~li~~~~-----~~~-----------~~~~a~~~~~~m~~~~~ 575 (662)
+++++. .+-...|-+....-. +.+ ....|.++|+++...++
T Consensus 531 erlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k 587 (677)
T KOG1915|consen 531 ERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLK 587 (677)
T ss_pred HHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 999975 344446655544333 223 56678889988876555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-11 Score=123.19 Aligned_cols=249 Identities=8% Similarity=0.045 Sum_probs=117.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcccccchHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 038801 341 LQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF--GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (662)
.+.|+++.|.+.+.++.+ ..|+...+. .....+...|+++.|.+.++++.+.. +-+...+..+...|.+.|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~-----~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 129 QQRGDEARANQHLERAAE-----LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHCCCHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh
Confidence 556666666666655532 223332222 12344555566666666666655544 3345555555566666666
Q ss_pred HHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 419 TAEATQLVMDISSSGLQLDV-------GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
+++|.+++..+.+.+..++. ..|..++.......+.+...++++.+.+. .+.+......+...+...|+.++
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHH
Confidence 66666666666555433211 11222222222233334444444443322 13344445555555555555555
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
|.+++.+..+. .|+.. -.++.+....++.+++.+..+...+. .|+. ..+..+...|.+.+++++|.+.|+.+
T Consensus 282 A~~~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 282 AQQIILDGLKR---QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHhc---CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555554442 11211 11222223335555555555555543 3332 34445555555555555555555555
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
. ...|+...+..+..++.+.|+.++|.+++++.
T Consensus 355 l---------~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 355 L---------KQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred H---------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 33455555555555555555555555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-11 Score=122.74 Aligned_cols=227 Identities=7% Similarity=-0.010 Sum_probs=100.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHH---HHc
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD-ALIEA---SIT 450 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~---~~~ 450 (662)
...+...|+++.|.+.++.+.+.. +-+..++..+...+...|++++|.+++..+.+.+.. +...+. .-..+ +..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554443 233444445555555555555555555555544322 111111 00011 111
Q ss_pred CCCHHHHHHHHHHHHHcCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 451 SQDFQSAFSLFRDMREARI---YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
.+..+++.+.+..+.+... +.+...+..+...+...|+.+.|.+.+++..+..+-.++..............++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 1112222223333322210 1233444444445555555555555555544431111110001111111223355556
Q ss_pred HHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHH
Q 038801 528 AKRTLRRMIFLQFEPND---QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 604 (662)
+.+.+++..+. .|+. ....++...|.+.|++++|.+.|+... .....|+..++..+...+.+.|+.++
T Consensus 318 ~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-------a~~~~p~~~~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 318 LEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-------ACKEQLDANDLAMAADAFDQAGDKAE 388 (409)
T ss_pred HHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-------HhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 66666655543 3333 334456666666666666666666433 22445666666666666666666666
Q ss_pred HHHHHHHH
Q 038801 605 VMQVVEKS 612 (662)
Q Consensus 605 A~~~~~~m 612 (662)
|.+++++.
T Consensus 389 A~~~~~~~ 396 (409)
T TIGR00540 389 AAAMRQDS 396 (409)
T ss_pred HHHHHHHH
Confidence 66666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-11 Score=106.50 Aligned_cols=226 Identities=10% Similarity=0.071 Sum_probs=149.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-c--HHhHHHHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSS-Q--MVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A~ 311 (662)
.+.++|.++|-+|.+.. +-+..+--+|-+.|-+.|.++.|+.++..+.++.--+ + ....-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 89999999999998632 2222334456788899999999999999998763111 1 334556778899999999999
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH-HHHHHHhcCChHHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG-IISACVNLGLSDKAHSI 390 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~ 390 (662)
++|...++.... -......|+..|-+..+|++|++.-+++.++.+.........|.+ +...+....+++.|..+
T Consensus 128 ~~f~~L~de~ef-----a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 128 DIFNQLVDEGEF-----AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHhcchhh-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 998887775322 445677788888888888888888887766443333333222222 33444445566666776
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 391 LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
+.+..+.+ +.++..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66666654 33334444455666666777777777766666533333445566666666666666666666666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-11 Score=119.34 Aligned_cols=281 Identities=11% Similarity=0.083 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHH--HHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESS-FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYS--SLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 311 (662)
|+++.|.+.+....+.+ ++... |.....+..+.|+++.|.+.+.++.+.. |+...+. .....+...|+.+.|.
T Consensus 98 Gd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 89999888777765432 12222 3223345578889999999998887753 5543332 3356788888888888
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc-------chHHHHHHHHHhcCCh
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR-------SVGFGIISACVNLGLS 384 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~ 384 (662)
..+.+..+..+. +...+..+...|.+.|++++|.+++..+.+ ....++. .+|..++.......+.
T Consensus 174 ~~l~~~~~~~P~-----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k---~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 174 HGVDKLLEVAPR-----HPEVLRLAEQAYIRTGAWSSLLDILPSMAK---AHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHHhcCCC-----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 887777766433 667777888888888888888888888776 2222111 0111222222222233
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. .+|... .++.+....++.+++++..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHH
Confidence 3333333333221 1234444444555555555555555555554442 222211 1122222334445555444444
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 465 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
.+.. |.+. ..+.++...+.+.|++++|.+.|+...+. .|+.
T Consensus 321 lk~~-P~~~------------------------------------~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~ 361 (398)
T PRK10747 321 IKQH-GDTP------------------------------------LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDA 361 (398)
T ss_pred HhhC-CCCH------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence 4332 2222 33455555555666666666666665552 4555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.+|..+...+.+.|+.++|.+++++..
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555556666666666666666665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-14 Score=135.82 Aligned_cols=258 Identities=14% Similarity=0.145 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG-IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 335 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
.+...+.+.|++++|++++.+... ...+|+...|.. +...+...++++.|.+.++++...+ +-+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~---~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ---KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc-ccccccccccccc-
Confidence 445556666666666666644321 111344444433 2333444556666666666665554 2244455555554
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhcCCHHHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR-IYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
...+++++|.+++....+. .++...+..++..+.+.|+++++..+++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556666666665554433 2344445555555666666666666666554322 123333444444445555555555
Q ss_pred HHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.+.+++..+..+- |....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+.+|++..
T Consensus 166 ~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~- 241 (280)
T PF13429_consen 166 LRDYRKALELDPD--DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL- 241 (280)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc-
Confidence 5555554442111 23334444555555555555444444444331 2222344444555555555555555555544
Q ss_pred hhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 573 KISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 573 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
...| |..+...+..++...|+.++|.++.++
T Consensus 242 --------~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 242 --------KLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp --------HHSTT-HHHHHHHHHHHT--------------
T ss_pred --------cccccccccccccccccccccccccccccccc
Confidence 1122 334444445555555555555554444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.7e-11 Score=119.30 Aligned_cols=289 Identities=13% Similarity=0.041 Sum_probs=162.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcH--HhHHHHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSF-GFLAYLYALKGLQEKIVELESLMNEFGFSSQM--VFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 311 (662)
|+++.|.+.+....+. .|+...+ -....+..+.|+.+.|.+.+....+.. |+. .+.......+...|+.+.|.
T Consensus 98 g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 98 GDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 6777777766665443 2333222 222345556666666666666665432 332 22333455556666666666
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 391 (662)
..+..+.+..+. +...+..+...+.+.|++++|.+++..+.+
T Consensus 174 ~~l~~l~~~~P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k--------------------------------- 215 (409)
T TIGR00540 174 HGVDKLLEMAPR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAK--------------------------------- 215 (409)
T ss_pred HHHHHHHHhCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------------------------------
Confidence 665555554322 444555555555555555555555555544
Q ss_pred HHHHHCCCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 392 DEMNACGCSVGLGVYVPTLKAY---CKEHRTAEATQLVMDISSSGL---QLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
.+..+.......-..++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..
T Consensus 216 -----~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 216 -----AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred -----cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33211111100000111 111122222223333333211 1255666666677777777777777777776
Q ss_pred HcCCCCCccc--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038801 466 EARIYDLKGS--YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543 (662)
Q Consensus 466 ~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 543 (662)
+.. +++... ...........++.+.+.+.+++..+..+-.|+.....++...+.+.|++++|.+.|+........||
T Consensus 291 ~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 291 KKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred hhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 653 222111 11111222334566777777777776545555435667888889999999999999995444345789
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...+..+...+.+.|+.++|.++|++..
T Consensus 370 ~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 370 ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9888899999999999999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-10 Score=108.27 Aligned_cols=217 Identities=13% Similarity=0.113 Sum_probs=172.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (662)
.|+.-.+..-|+..+..... +...|--+..+|....+.++....|++..+.+.. |..+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 57888888899998887533 3334777778899999999999999999887432 778888888888889999999999
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 461 FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 461 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
|++.+... |.+...|.-+..+..+.++++++...|++.+++.+--| ..|+.....+...++++.|.+.|+..++.
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~--Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP--EVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 99998876 66667777888888899999999999999999755444 57888999999999999999999998873
Q ss_pred CCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHH
Q 038801 541 EPN-------DQTYL--SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 541 ~p~-------~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
.|+ ..++. .++..- =.+++..|.+++++.. .+.|-. ..|..|.....+.|+.++|+++|+
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~---------e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI---------ELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH---------ccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444 22221 111111 2389999999999998 455544 678889999999999999999999
Q ss_pred HHHh
Q 038801 611 KSQE 614 (662)
Q Consensus 611 ~m~~ 614 (662)
+...
T Consensus 562 ksa~ 565 (606)
T KOG0547|consen 562 KSAQ 565 (606)
T ss_pred HHHH
Confidence 8643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-09 Score=100.20 Aligned_cols=356 Identities=10% Similarity=-0.013 Sum_probs=247.2
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHH--
Q 038801 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGF-- 261 (662)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-- 261 (662)
..-...+.|..+.|+..|.+.... .+..-..|-.|.... .+.+.+ .... .|...|..-+..
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~li----t~~e~~----~~l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELI----TDIEIL----SILV-VGLPSDMHWMKKFF 232 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhh----chHHHH----HHHH-hcCcccchHHHHHH
Confidence 334445667888888888876441 223333444433322 222222 2221 122222222221
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHH
Q 038801 262 LAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFL 341 (662)
Q Consensus 262 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 341 (662)
+..++-.....+++.+=.+.....|++-+...-+....+.-...++|+|+.+|++..+..+. .--|..+|+.++..--
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY--Rl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY--RLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--cchhHHHHhHHHHHHh
Confidence 33556666678888888888888887666655555555666778999999998888877322 1126677777665443
Q ss_pred hcCCH-HHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 342 QNGNV-KGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 342 ~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..... --|..+++- +...|. |+..+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|...++..
T Consensus 311 ~~skLs~LA~~v~~i------dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNI------DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred hhHHHHHHHHHHHHh------ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccH
Confidence 32222 223333322 444553 55667777788889999999999999876 556788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
.|.+-|+...+.+ +.|-..|-.|.++|.-.+...=|+-.|++..+.. |.|...|..|...|.+.++.++|++.|.+..
T Consensus 382 AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 382 AAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999874 3388999999999999999999999999998875 7888999999999999999999999999988
Q ss_pred hCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF----LQFEPN-D-QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.-... +...|..|.+.|-+.++.++|.+.|++-++ .|..-+ . ..-.-|..-+.+.+++++|..+.....
T Consensus 460 ~~~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 460 LLGDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hcccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 75332 456789999999999999999999988776 232222 2 223335556667788888877665555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=131.84 Aligned_cols=260 Identities=15% Similarity=0.063 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+...+.+.|++++|+++++........|.+..+...+..++...++++.|++.++++... -.-+...+..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~~~~~l 84 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccc
Confidence 3455555666666666666443332212344444444555555556666666666666442 11123334444
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCcHHhHHHHHHHHHhcC
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG-FSSQMVFYSSLISGYVKLG 305 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g 305 (662)
+.. ... +++++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|
T Consensus 85 ~~l-~~~-~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 85 IQL-LQD-GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccc-ccc-cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 444 343 6666666666554333 2344445555555566666666666666554322 2344555555555566666
Q ss_pred ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChH
Q 038801 306 NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 306 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 385 (662)
+.++|.+.|.+.++..+. |....+.++..+...|+.+++.+++....+ ..+.|...+..+..++...|+.+
T Consensus 161 ~~~~A~~~~~~al~~~P~-----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD-----DPDARNALAWLLIDMGDYDEAREALKRLLK----AAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHH----H-HTSCCHCHHHHHHHHHHT-HH
T ss_pred CHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCChHHHHHHHHHHHH----HCcCHHHHHHHHHHHhccccccc
Confidence 666666665555554322 344555555555555555555555554443 11223333444445555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD 428 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (662)
+|...|++..+.. +.|..+...+..++...|+.++|..+..+
T Consensus 232 ~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 232 EALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5555555544432 33444444444555555555555444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=122.38 Aligned_cols=290 Identities=10% Similarity=0.043 Sum_probs=200.7
Q ss_pred ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChH
Q 038801 306 NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 306 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 385 (662)
+..+|...|.. +..... -...+...+..+|...+++++|.++|+.+++..+-.+. +..+|++++--+- +.-
T Consensus 334 ~~~~A~~~~~k-lp~h~~----nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~-~meiyST~LWHLq---~~v 404 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHY----NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK-GMEIYSTTLWHLQ---DEV 404 (638)
T ss_pred HHHHHHHHHHh-hHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-chhHHHHHHHHHH---hhH
Confidence 34566666655 332111 02244556667777777777777777777665443332 3445665544332 111
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+--.+-+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|+..
T Consensus 405 ~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 405 ALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 1112223333332 556789999999999999999999999988876 45 6788888888888888999999999887
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038801 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543 (662)
Q Consensus 465 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 543 (662)
+... +-.-..|..+...|.+.++++.|+-.|++..+- .| +.+....+...+-+.|+.|+|++++++..... .-|
T Consensus 482 l~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn 556 (638)
T KOG1126|consen 482 LGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKN 556 (638)
T ss_pred hcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCC
Confidence 6554 222234555667888999999999999888764 33 35566677777888899999999999988753 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCH
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 621 (662)
+.+--.-+..+...+++++|+..+++++ .+.|+. ..|..++..|-+.|+.+.|+.-|--+.+.++++.-
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk---------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELK---------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHH---------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4444445566677799999999999999 566765 67778888899999999999888888777766443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-09 Score=105.48 Aligned_cols=487 Identities=10% Similarity=-0.002 Sum_probs=318.4
Q ss_pred chhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHH
Q 038801 66 DNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTV 145 (662)
Q Consensus 66 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (662)
.+..-+..+++.+..+.++..|.-+-++....+. |+..---+.+.+.-.++...+..++... .-...|..+.
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~------~le~~d~~cr 85 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTY------KLEKRDIACR 85 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHh------hhhhhhHHHH
Confidence 3455566777778888888889888888876654 4444445666666666655555555432 1223455677
Q ss_pred HHHHHHHHhcCCchhHHHHHH----HHHhcCCCCCc--------ccH----HHHHHHHhh-------cCCcHHHHHHHHH
Q 038801 146 HTLLGSMRNANTAAPAFALVK----CMFKNRYFMPF--------ELW----GGFLVDICR-------KNSNFVAFLKVFE 202 (662)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~--------~~~----~~~l~~~~~-------~~~~~~~a~~~~~ 202 (662)
......+.+..+++.|..++. .+......+.+ ... .+.-.+.|. ...+.++|...|.
T Consensus 86 yL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 86 YLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 778888899999999999998 22211111111 000 112222222 2345666666666
Q ss_pred HHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC----CCCcccHHHHHHHHHHcCCHHHHHHH
Q 038801 203 ECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGV----RPNESSFGFLAYLYALKGLQEKIVEL 278 (662)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~ 278 (662)
+. ...|...|..+...... ..-.+.+.|+.+..... .-+......+.....-...-+.....
T Consensus 166 ~A-----------l~~D~~c~Ea~~~lvs~---~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 166 EA-----------LLADAKCFEAFEKLVSA---HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HH-----------HhcchhhHHHHHHHHHH---HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 65 44566666555543322 22223333333332111 11111222222111000000000101
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 279 ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK 358 (662)
Q Consensus 279 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 358 (662)
-++..-.+..-+........+-+...+++.+..+++...++..+ +....+..-|.++...|+..+-..+=.++..
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-----fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-----FHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-----CCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11111123345556666677778888999999999888888742 2556667777788999998888877777765
Q ss_pred hCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh
Q 038801 359 LEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV 438 (662)
Q Consensus 359 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 438 (662)
..+-...+|.++..-|...|+..+|.+.|.+....+ +.=...|-.+...|+-.|.-|.|...|...-+.- .-..
T Consensus 307 ----~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~h 380 (611)
T KOG1173|consen 307 ----LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCH 380 (611)
T ss_pred ----hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCc
Confidence 333456778888888888899999999999876653 2223578888899999999999999888776541 1122
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cchhhHH
Q 038801 439 GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED----PRVE-VKTHDWN 513 (662)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-p~~~~~~ 513 (662)
.-+--+.--|.+.++++-|.+.|.+..... |.|+..++-+.......+.+.+|..+|...... .+-+ -...+++
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 223334556788899999999999888764 777888888888888899999999999887631 1111 1344688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFL 593 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~ 593 (662)
.|.++|.+.+.+++|+..+++.+... .-|..++.++.-.|...|+++.|++.|++.. .+.|+..+...++
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---------~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---------ALKPDNIFISELL 529 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---------hcCCccHHHHHHH
Confidence 99999999999999999999999752 3477899999999999999999999999999 8899987777666
Q ss_pred HHH
Q 038801 594 YAL 596 (662)
Q Consensus 594 ~~~ 596 (662)
..+
T Consensus 530 ~~a 532 (611)
T KOG1173|consen 530 KLA 532 (611)
T ss_pred HHH
Confidence 643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-10 Score=116.04 Aligned_cols=506 Identities=14% Similarity=0.051 Sum_probs=250.0
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHH
Q 038801 89 KSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCM 168 (662)
Q Consensus 89 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 168 (662)
.++-.+...|+.|+..||..++..|+..|+.+.+- .|.. |+.+..+.+...++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~f----m~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPF----MEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhh----hhcccccccchhHHHHHhcccccccccCCC------
Confidence 45566778899999999999999999999977666 5544 457777778889999999999999887776
Q ss_pred HhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhh--------------hh---cCCCCccHHHHHHHHHHHh
Q 038801 169 FKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALD--------------EN---LDFMKPNIYACNAALEGCC 231 (662)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~ll~~~~ 231 (662)
.+....++.|...|+..|++..-..+=+.+..+... +. ..+..||..+- +....
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv 150 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLV 150 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHH
Confidence 244445778999999999877632222223222110 11 12233443321 11111
Q ss_pred ccCCChhHHHHHHHH-----------------------------HHhcCC-CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 232 YGLQSVSDAEKVIET-----------------------------MSVLGV-RPNESSFGFLAYLYALKGLQEKIVELESL 281 (662)
Q Consensus 232 ~~~~~~~~a~~~~~~-----------------------------m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 281 (662)
-. |-++.+++++.. |.+.+. .|+..+|..+++...-.|+.+.|..++.+
T Consensus 151 ~e-glwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 151 LE-GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HH-HHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 11 222222222211 111222 47777777777777777777777777777
Q ss_pred HHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 038801 282 MNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEP 361 (662)
Q Consensus 282 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 361 (662)
|.+.|++.+..-+-.|+-+ .++..-+..+ .+++.. .|+.|+..|+...+..+..+|....+.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~v-lrgmqe---~gv~p~seT~adyvip~l~N~~t~~~~----------- 291 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFV-LRGMQE---KGVQPGSETQADYVIPQLSNGQTKYGE----------- 291 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHH-HHHHHH---hcCCCCcchhHHHHHhhhcchhhhhcc-----------
Confidence 7777777777666666654 4444444444 344443 477777777777666666655422111
Q ss_pred CCcccccchHHHHHHHHHhcCChHHHHHHH------------HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038801 362 SGIVVDRSVGFGIISACVNLGLSDKAHSIL------------DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDI 429 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------------~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 429 (662)
.|. +....+.+-+.+-.-.| ..|.+.+ .+..=.|+.....+|...+.. ...|+-+..+++-..|
T Consensus 292 e~s-q~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 292 EGS-QLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQL 367 (1088)
T ss_pred ccc-chhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhh
Confidence 121 22222222211111122 1111111 111112333333334333322 2256666666666555
Q ss_pred HhCC--CCC-ChhhHHHHHHHHHcCCCHHHHHHHHH--HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC--
Q 038801 430 SSSG--LQL-DVGNYDALIEASITSQDFQSAFSLFR--DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED-- 502 (662)
Q Consensus 430 ~~~g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 502 (662)
..-- ..+ ++..|..++.-|.+.-+..-...++. +...... +....-.+. -+...-+...+.+-+..+...
T Consensus 368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~tp~vs-ell~~lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSEDTPRVS-ELLENLRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhhhHHHH-HHHHHhCcchHHHHHhhhhHHHH
Confidence 4210 111 22334333333332211111111111 1100000 000000000 000000111111111110000
Q ss_pred -CCC-------ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 503 -PRV-------EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 503 -~~~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
... .+-...-+.++..+++.-+..+++..-+.....- .| ..|..||+-+......+.|..+.++....
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~- 520 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTR- 520 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhccc-
Confidence 000 0111234555556666555556555444443321 11 56777777777777777777777776621
Q ss_pred cccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CC---HHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 575 STDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VD---KWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 575 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
+..+..|..-+..+.+.+.+.+....+..+++++.+.-.. |. +...++.....-|+.+.-++..+-+..+
T Consensus 521 ----d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 521 ----DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred ----chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 2234455666677777777777777777777777553222 21 2222344444445555555555554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-09 Score=103.74 Aligned_cols=390 Identities=12% Similarity=0.009 Sum_probs=254.0
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhc
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPN-ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKL 304 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~ 304 (662)
-+-|.++ |++++|++.|.+..+. .|| ...|...-.+|...|+++++.+--...++. .|+ +..+..=..++-..
T Consensus 122 GN~~f~~-kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 122 GNKFFRN-KKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhc-ccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 3457777 9999999999999875 688 777888888899999999998888777774 466 45555566677777
Q ss_pred CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------HHhCCCCcccccchHHHHHH
Q 038801 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA--------QKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 305 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m--------~~~~~~~~~~~~~~~~~ll~ 376 (662)
|++++|+.= +|-.++..++....-.--+.+++.+. .+-......|......+...
T Consensus 197 g~~~eal~D-----------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 197 GKFDEALFD-----------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred ccHHHHHHh-----------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 888777531 11222222222222222222222211 00001122232222222211
Q ss_pred HHHh-------------------------cC---ChHHHHHHHHHHHHC---CCC---CC------hhhHHHHHHHHHHc
Q 038801 377 ACVN-------------------------LG---LSDKAHSILDEMNAC---GCS---VG------LGVYVPTLKAYCKE 416 (662)
Q Consensus 377 ~~~~-------------------------~~---~~~~a~~~~~~m~~~---~~~---~~------~~~~~~li~~~~~~ 416 (662)
.+-. .+ .+..+...+.+-... ... .| ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 1110 01 122222222221110 001 11 11222222234457
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
|+.-.|..-|+........ +...|..+...|....+.++-+..|++..+.+ +.+..+|..-.+...-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887433 23338888889999999999999999999887 666778988888888899999999999
Q ss_pred HHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 497 DEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 497 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
++.+. +.| ++..|-.+.-+..+.+++++++..|++.++. .|+. ..|+.....+...+++++|.+.|+...+.-
T Consensus 418 ~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 418 QKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99876 344 3566777777778999999999999999985 5655 699999999999999999999999998322
Q ss_pred cccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHhhhhhhhHHHHHHHHhh
Q 038801 575 STDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM-ENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 575 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~a~~~~~~~~~l 648 (662)
+. ..++-.+. .+...++..-.+ +++.+|.+++.+..+.++.-+.-..-++.. ...|++++|..+.++...+
T Consensus 493 ~~--~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PR--EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cc--cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 21 12222222 233333333334 999999999999999888877544445544 4568999998888776654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-10 Score=101.60 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=135.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV----GNYDALIEASI 449 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~ 449 (662)
|..-|...|-++.|+++|..+.+.+ .--......|+..|-...+|++|.++-+++.+.+-.+.. ..|.-+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 4455566666777777777766644 233445566777777777777777777777666444322 23445555555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
...+.+.|..++++..+.+ +..+..-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|.+.|+.++..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6667777777777777654 223333344456667777777777777777665 22223445677777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHH---ccCchHHHH
Q 038801 530 RTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALV---KGGFFDAVM 606 (662)
Q Consensus 530 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~ 606 (662)
..+.++.+.. +....-..+-..-....-.+.|..++.+-. .-.|+...+..|+..-. ..|+..+-.
T Consensus 270 ~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql---------~r~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 270 NFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQL---------RRKPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred HHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHH---------hhCCcHHHHHHHHHhhhccccccchhhhH
Confidence 7777777653 333333333333333344555555554444 23577777777766543 345566666
Q ss_pred HHHHHHH
Q 038801 607 QVVEKSQ 613 (662)
Q Consensus 607 ~~~~~m~ 613 (662)
..+.+|.
T Consensus 339 ~~lr~mv 345 (389)
T COG2956 339 DLLRDMV 345 (389)
T ss_pred HHHHHHH
Confidence 6666664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-08 Score=95.64 Aligned_cols=538 Identities=9% Similarity=-0.014 Sum_probs=306.5
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHhhh-CCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 70 SLETNLHKSLLTNNTDEAWKSFKSLTA-NSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 70 ~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
.|-.-+.-+..+|+...-...|+..+. ..+.-....|...+......+-.+-....++.++ ..++..-+..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL--------k~~P~~~eey 175 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL--------KVAPEAREEY 175 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH--------hcCHHHHHHH
Confidence 344444455556666555556655443 2333344456666666666555555555555442 1233344556
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCC-----CCCcccHHHHHHHHhhcCCcHHH---HHHHHHHHHHhhhhhhcCCCCccH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRY-----FMPFELWGGFLVDICRKNSNFVA---FLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
+..++..+++++|.+.+..++.... .+++......+-.+.++..+.-. ...++..+. +.-+|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---------~rftDq 246 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---------RRFTDQ 246 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---------ccCcHH
Confidence 6666777777777777766664221 12222223333333333322211 111222221 123443
Q ss_pred --HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC----------------------HHHHH
Q 038801 221 --YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL----------------------QEKIV 276 (662)
Q Consensus 221 --~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----------------------~~~a~ 276 (662)
..|++|-+-|.+. |.+++|.++|++-... ..+..-|+.+.++|++-.. ++-..
T Consensus 247 ~g~Lw~SLAdYYIr~-g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRS-GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 4789999999997 9999999999997654 3345556666666653211 11222
Q ss_pred HHHHHHHhcC-----------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHhcC
Q 038801 277 ELESLMNEFG-----------FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF-SKETYCEVVKGFLQNG 344 (662)
Q Consensus 277 ~~~~~~~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~ 344 (662)
.-|+.+.... -+-++..|..-+. +..|+..+-..+|-+.++.-......- -...|..+.+-|-.+|
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 2233322221 0112222322222 224566677777777776532211111 2346888899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCC------ChhhHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACG-----------CSV------GLGVYV 407 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----------~~~------~~~~~~ 407 (662)
+.+.|..+|++..+..-..+.-=..+|-.-...=.+..+++.|.++.+....-- .++ +..+|+
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 999999999987542111111001122223333345567778888776653311 111 233555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHh-
Q 038801 408 PTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK-GSYLTIMTGLME- 485 (662)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~- 485 (662)
..++.--..|-++....+|+++.+..+.......| ....+-.+..++++.++|++-+..-..|.. ..|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 56666667788899999999998775442222222 222334556788888888776554334443 455655554443
Q ss_pred --cCCHHHHHHHHHHHhhCCCCccchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC
Q 038801 486 --NHRPELMAAFLDEVVEDPRVEVKTH--DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQ 559 (662)
Q Consensus 486 --~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~ 559 (662)
..+++.|..+|++..+ +..|... .|-.....--+.|-...|+.++++... ++++.. ..||+.|.--...=.
T Consensus 561 ygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred hcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhC
Confidence 4468999999999998 5555432 222222222356888899999999765 356654 589988887666545
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccHHHH---HHHHHHHHccCchHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHhh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEHNLV---DAFLYALVKGGFFDAVMQVVEKSQEM---KVFVDKWKYKQAFMENHK 633 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~~~~~~~~ 633 (662)
+.....+|++.++ .-|+...- --+...-.+.|.++.|..++....+. ...++.|...-.+=..||
T Consensus 638 v~~TR~iYekaIe---------~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHG 708 (835)
T KOG2047|consen 638 VPRTREIYEKAIE---------SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHG 708 (835)
T ss_pred CcccHHHHHHHHH---------hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcC
Confidence 6667788888883 24444322 33334456899999999999887543 233668888888889999
Q ss_pred hhhhhHHHH
Q 038801 634 KLKVAKLRK 642 (662)
Q Consensus 634 ~~~~a~~~~ 642 (662)
+-+--+.++
T Consensus 709 nedT~keML 717 (835)
T KOG2047|consen 709 NEDTYKEML 717 (835)
T ss_pred CHHHHHHHH
Confidence 955444444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-09 Score=104.32 Aligned_cols=481 Identities=9% Similarity=-0.028 Sum_probs=294.3
Q ss_pred ChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccH
Q 038801 141 DFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
+..-|..+++-+....++..|+-+-+++...+..|.+..+ +...+.-.|+++.|..+...-.- ...|.
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~---~aq~l~~~~~y~ra~~lit~~~l---------e~~d~ 82 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW---LAQVLYLGRQYERAAHLITTYKL---------EKRDI 82 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH---HHHHHHhhhHHHHHHHHHHHhhh---------hhhhH
Confidence 3344555666666666777777777777766544444332 33334346677777666555421 45566
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHH----HHHhc---------CCCCCccc----HHHHHH-------HHHHcCCHHHHH
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIE----TMSVL---------GVRPNESS----FGFLAY-------LYALKGLQEKIV 276 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~----~m~~~---------g~~p~~~t----~~~li~-------~~~~~g~~~~a~ 276 (662)
.+.......+.+. .++++|+.++. .+... -+.+|..- -+.-.+ .|......++|.
T Consensus 83 ~cryL~~~~l~~l-k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 83 ACRYLAAKCLVKL-KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHH
Confidence 6666666667665 77888877776 22110 01111111 111112 223334456666
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHH
Q 038801 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME-QSDFSKETYCEVVKGF-LQNGNVKGLANLII 354 (662)
Q Consensus 277 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~-~~~~~~~~a~~~~~ 354 (662)
..|.+... .|...+.++...-.. . .-.+.+. ++.+...+.. -..-+....-.+-... ++..+- .....-.
T Consensus 162 ~~Y~~Al~----~D~~c~Ea~~~lvs~-~-mlt~~Ee-~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~ 233 (611)
T KOG1173|consen 162 DKYKEALL----ADAKCFEAFEKLVSA-H-MLTAQEE-FELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNE 233 (611)
T ss_pred HHHHHHHh----cchhhHHHHHHHHHH-H-hcchhHH-HHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCc
Confidence 66665544 333333333222111 1 1111111 1111111000 0000111111111110 000000 0000000
Q ss_pred HHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 038801 355 EAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL 434 (662)
Q Consensus 355 ~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 434 (662)
+ ..-.+..-+......-..-|...+++.+..++.+.+.+.. ++....+..-|.++...|+.-+-..+=.+|++.
T Consensus 234 ~---~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-- 307 (611)
T KOG1173|consen 234 D---ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-- 307 (611)
T ss_pred h---hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--
Confidence 0 0002223344444445566667889999999999988875 667777777788888999888888888888876
Q ss_pred CC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH
Q 038801 435 QL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN 513 (662)
Q Consensus 435 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 513 (662)
-| ...+|-++.--|...|+.++|.+.|.+....+ +.-...|..+...|.-.+..+.|...+....+-..-..-+..|
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY- 385 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY- 385 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH-
Confidence 44 56889999888888899999999999877654 2223578888888999999999988887766532211112234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
+.--|.+.++.+.|.+.|.+... +.|+ +..++-+.-.....+.+.+|..+|+.....++....... .-..+++-|
T Consensus 386 -lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NL 461 (611)
T KOG1173|consen 386 -LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNL 461 (611)
T ss_pred -HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhH
Confidence 34457788999999999999885 5674 467777777777789999999999999866664432222 234678889
Q ss_pred HHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 593 LYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
+.++.+.+++++|+..+++.....++ ++.+....-.....|+++.|...+-+++.+.|.+.+
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 99999999999999999999877665 566666555557779999999999999999998854
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-09 Score=97.97 Aligned_cols=343 Identities=11% Similarity=-0.025 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHH--HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHH
Q 038801 122 LKRAFASVVYVIEKNPKLLDFQTVHTLLG--SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLK 199 (662)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 199 (662)
....+..+...++.....-+.+.|..-+. .+...|..+.|+..|...+.. .|-....+.-|...+ .+.+.+..
T Consensus 142 ~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~ 216 (559)
T KOG1155|consen 142 INSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSI 216 (559)
T ss_pred hhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHH
Confidence 33444444444444443333334433333 455778888899888887763 344444444443333 22222222
Q ss_pred HHHHHHHhhhhhhcCCCCc-cHHHHHH-HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 038801 200 VFEECCRIALDENLDFMKP-NIYACNA-ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277 (662)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 277 (662)
+... ... +...-.. +..++-.- .+.++++.-.+.....|+.-+...-+....+.-...|+++|+.
T Consensus 217 l~~~------------l~~~~h~M~~~F~~~a~~el-~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s 283 (559)
T KOG1155|consen 217 LVVG------------LPSDMHWMKKFFLKKAYQEL-HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAES 283 (559)
T ss_pred HHhc------------CcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 2111 111 2221122 22344443 6788888888888888866555544444445557789999999
Q ss_pred HHHHHHhcCC--CCcHHhHHHHHHHHHhcCChh---hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038801 278 LESLMNEFGF--SSQMVFYSSLISGYVKLGNLE---SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANL 352 (662)
Q Consensus 278 ~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 352 (662)
+|+++.+... --|..+|+.++-. +..+-. -|..++ . +.. --+.|...+.+-|.-.++.++|...
T Consensus 284 ~Feei~knDPYRl~dmdlySN~LYv--~~~~skLs~LA~~v~-~-idK-------yR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 284 VFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKLSYLAQNVS-N-IDK-------YRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred HHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHHHHHHHHHH-H-hcc-------CCccceeeehhHHHHHHhHHHHHHH
Confidence 9999998741 1356777776643 333222 222221 1 111 1456777788888889999999999
Q ss_pred HHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 353 IIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 353 ~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
|++..++.+. ....|+.+..-|....+...|.+-++..++.. +.|-..|-.|..+|.-.+...-|+-.|++..+.
T Consensus 353 FkRALkLNp~----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 353 FKRALKLNPK----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHhcCcc----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 9998764433 23345567788999999999999999999875 678889999999999999999999999999886
Q ss_pred CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 433 GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 433 g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
+| |...|.+|.++|.+.++.++|++.|+.....|-. +...+..|.+.|-+.++.++|...+.+.++
T Consensus 428 --kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 428 --KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred --CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55 8899999999999999999999999999988733 456899999999999999999999888765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-11 Score=117.52 Aligned_cols=282 Identities=12% Similarity=-0.019 Sum_probs=176.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcHHhHHHHHHHHHhcCChhhHHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG--FSSQMVFYSSLISGYVKLGNLESASR 312 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 312 (662)
-+..+|+.+|+.+... +.-+.....-+-++|...+++++|+++|+.+.+.. ..-+..+|.+.+-.+-+.=....-
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L-- 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL-- 409 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH--
Confidence 3567788888885443 22233444456678888888888888888887753 123466777776554322111111
Q ss_pred HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHH
Q 038801 313 TILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSIL 391 (662)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~ 391 (662)
-.++++..+. .+.+|.++.++|.-+++.+.|++.|++..++ .| ...+|+.+..-+....++|.|...|
T Consensus 410 -aq~Li~~~~~-----sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----dp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 410 -AQDLIDTDPN-----SPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----DPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred -HHHHHhhCCC-----CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----CCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 1223333221 6778888888888888888888888876542 23 3455555555566667777777777
Q ss_pred HHHHHCCCCCChhhHHH---HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 392 DEMNACGCSVGLGVYVP---TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 392 ~~m~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
+..+. .|...||+ +.-.|.|.++++.|+-.|++..+.+.. +.+....+...+.+.|+.|+|+++|++....+
T Consensus 479 r~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 479 RKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred Hhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 76653 34444444 456677788888888888777765322 55666667777777788888888888777665
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
+-++..-.--...+...+++++|...++++++- +.-+..+|-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 333334444455556666677777777776652 2223455666666777777777776666666653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-09 Score=102.24 Aligned_cols=286 Identities=10% Similarity=0.089 Sum_probs=193.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|++.+|+++..+..+ .+-.| ...|..-..+.-..|+.+.+..++.+..+..-.++..++-+........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae---~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAE---HGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhh---cCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 5777777777776544 22222 2334444566667778888888877777764456666777777777778888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCHHHHHHH
Q 038801 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK-------GSYLTIMTGLMENHRPELMAAF 495 (662)
Q Consensus 423 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~ 495 (662)
..-.+++.+.+.. +........++|.+.|++.+...++.+|.+.+.-.+. .+|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 8877777776433 5566677778888888888888888888877754432 4566666666666665655666
Q ss_pred HHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 496 LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
++....+ .+-++..-.+++.-+.++|+.++|.++.++..+.+..|+. ...-.+.+-++...-++..++-.+
T Consensus 252 W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--- 322 (400)
T COG3071 252 WKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--- 322 (400)
T ss_pred HHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH---
Confidence 6666553 3334445567777788888888888888888877655551 222344556777666666666553
Q ss_pred ccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 576 TDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 576 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
..+..| ..+.+|...|.+.+.+.+|.++|+...+.++....+..+.......|+.+.|....+..+.
T Consensus 323 ---~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 ---QHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ---hCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 233333 6777788888888888888888887777777766777777777778888888877776663
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-09 Score=99.77 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=189.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
|++.+|+++..+-.+.+-.| ...|.....+.-+.|+.+.+-.++.+.-+..-.++..++-+........|+...|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 88888888888877666333 33455555677788888888888888877633466666777777778888888887777
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHH
Q 038801 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 394 (662)
.+..+..+. .+........+|.+.|++.....++.+|.+ .+.--|.. +.++
T Consensus 177 ~~ll~~~pr-----~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k---a~~l~~~e-----------------~~~l---- 227 (400)
T COG3071 177 DQLLEMTPR-----HPEVLRLALRAYIRLGAWQALLAILPKLRK---AGLLSDEE-----------------AARL---- 227 (400)
T ss_pred HHHHHhCcC-----ChHHHHHHHHHHHHhccHHHHHHHHHHHHH---ccCCChHH-----------------HHHH----
Confidence 776665433 566667777777777777777777777665 33322210 0000
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc
Q 038801 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474 (662)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 474 (662)
...+|+.++.-....+..+.-...++....+ .+.+...-.+++.-+.+.|+.++|.++.++..+++..|.
T Consensus 228 -------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 228 -------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred -------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 0123444444444444444433444444332 233455555666666777777777777777776655444
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
....-.+.+.++.+.-++..++..+..+..| ..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++
T Consensus 298 --L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~ 371 (400)
T COG3071 298 --LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADAL 371 (400)
T ss_pred --HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 2223344555666666666666555555555 46788888888888888888888877764 78888888888888
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038801 555 VTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~ 571 (662)
.+.|+..+|.++.++..
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 88888888888888777
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-07 Score=93.64 Aligned_cols=429 Identities=12% Similarity=0.012 Sum_probs=267.4
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHh
Q 038801 152 MRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCC 231 (662)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 231 (662)
+...+++...+++.+.+++.... ...+....-+.++ ..|+-++|........+ +-..+.+.|..+--.+-
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~-~lg~~~ea~~~vr~glr--------~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLN-CLGKKEEAYELVRLGLR--------NDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhh-cccchHHHHHHHHHHhc--------cCcccchhHHHHHHHHh
Confidence 34556778888888888773322 2222222222333 46888888877776544 33455566765544444
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHH
Q 038801 232 YGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (662)
. ..++++|++.|......+ +-|...+.-+--.-++.|+++........+.+.. +.....|..+..++.-.|+...|.
T Consensus 87 ~-dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 S-DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred h-hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 488899999998887654 3345555555555567788887777777776653 233556777778888888999998
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH-HHHHHHHhcCCh
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVV------KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF-GIISACVNLGLS 384 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~-~ll~~~~~~~~~ 384 (662)
.+..+..+... ..|+...|.... ......|..++|++.+..-. +...|...+. +-...+.+.+++
T Consensus 164 ~il~ef~~t~~---~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e-----~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 164 EILEEFEKTQN---TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE-----KQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh-----hHHHHHHHHhhhHHHHHHHHhhH
Confidence 88777666532 234555444322 34556788888888876643 2223333333 345667888999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT-QLVMDISSSGLQLDVGNYDALIEASIT-SQDFQSAFSLFR 462 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~ 462 (662)
++|..++..++... +.+...|-.+..++.+-.+.-++. .+|....+. -|....-..+--.... ..-.+..-.++.
T Consensus 236 EeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 236 EEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHH
Confidence 99999999999885 444555555666665444444444 677666554 2221111111111122 223344556778
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh----C--------CC-Cccchhh--HHHHHHHHHhcCCHHH
Q 038801 463 DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE----D--------PR-VEVKTHD--WNSIIHAFCKAGRLED 527 (662)
Q Consensus 463 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~--------~~-~~p~~~~--~~~li~~~~~~g~~~~ 527 (662)
.+.+.|+|+. +..+...|-...+.+-.+++...+.. . .. -.|.... +-.++..|-+.|+++.
T Consensus 313 ~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 8888998764 44444444333332222222222221 1 00 1344443 4456788889999999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHH
Q 038801 528 AKRTLRRMIFLQFEPNDQ-TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVM 606 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 606 (662)
|+..++..+++ .|+.+ .|..=.+.+.+.|++++|..++++.. +.+ .+|..+=..-..-..++.+.++|.
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~-------elD-~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ-------ELD-TADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcc-chhHHHHHHHHHHHHHccccHHHH
Confidence 99999999975 78874 67777788999999999999999999 333 344443335555667889999999
Q ss_pred HHHHHHHhCCC
Q 038801 607 QVVEKSQEMKV 617 (662)
Q Consensus 607 ~~~~~m~~~~~ 617 (662)
+++....+.|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999988886
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-08 Score=99.93 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=118.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NL 588 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~ 588 (662)
.|......+.+.+..++|...+.+.... .| ....|......+...|..++|.+.|.... .+.|+. .+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---------~ldP~hv~s 720 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---------ALDPDHVPS 720 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---------hcCCCCcHH
Confidence 4666777888899999999888888764 44 34577777777888899999999999888 677876 78
Q ss_pred HHHHHHHHHccCchHHHHH--HHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHhhhCCC
Q 038801 589 VDAFLYALVKGGFFDAVMQ--VVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~~~~ 661 (662)
..++...+.+.|+..-|.. ++.++.+.++. |+.|.++.......|+.+.|..-+....+||+.....+|.-|+
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~ip 796 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNIP 796 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccccC
Confidence 8899999999999887777 99999998886 8899999999999999999999999999999998888887665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.5e-10 Score=103.38 Aligned_cols=200 Identities=16% Similarity=0.077 Sum_probs=119.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655442 1134455555666666666666666666665543 2333445555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 038801 483 LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYF 561 (662)
Q Consensus 483 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~ 561 (662)
+...|++++|.+.+++.............+..+..++...|++++|.+.+++..+. .| +...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 66666666666666665543221222344556666777777777777777777764 33 3456667777777777777
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 562 SVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
+|...+++.. .. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQ-------QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHH-------Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777777 22 122345555566666677777777777766643
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-07 Score=88.44 Aligned_cols=460 Identities=14% Similarity=0.063 Sum_probs=283.1
Q ss_pred HhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCc
Q 038801 79 LLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTA 158 (662)
Q Consensus 79 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 158 (662)
-..+++...+.+.+.+.+.-+ -...+....--.+...|+. .++++.+..... +..-+...|..+.-.+....++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~---~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKK---EEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccch---HHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhH
Confidence 346777777777777776322 2333333333333444543 444444432222 3334445666677777778899
Q ss_pred hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChh
Q 038801 159 APAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVS 238 (662)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 238 (662)
++|++.|...... .+++.....-|.-+-+..|+++..........+. .......|-.+..+.... |+..
T Consensus 92 ~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~-g~y~ 160 (700)
T KOG1156|consen 92 DEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLL-GEYK 160 (700)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHH-HHHH
Confidence 9999999999874 4677766666666666778888888777777663 233445677777777776 9999
Q ss_pred HHHHHHHHHHhcC-CCCCcccHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHH
Q 038801 239 DAEKVIETMSVLG-VRPNESSFGFLA------YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 239 ~a~~~~~~m~~~g-~~p~~~t~~~li------~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (662)
.|..+.++..+.. -.|+...|.... ......|..+.|.+.+..-... +.-....-..-.+.+.+.++.++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999997764 246666665443 2344677778777776654433 2122233344556788899999999
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHH-HHHHHHhcCCHHHHH-HHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCE-VVKGFLQNGNVKGLA-NLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS 389 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 389 (662)
.+|...+... ||...|+. +..++.+-.+.-+++ .+|....+..+....|-....+.+ . ...-.+....
T Consensus 240 ~~y~~Ll~rn------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdk 309 (700)
T KOG1156|consen 240 KVYRRLLERN------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDK 309 (700)
T ss_pred HHHHHHHhhC------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHH
Confidence 9988888774 45555554 445554444444444 677766543333333322222211 1 1223344556
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CC----------CCCChh--hHHHHHHHHHcCCC
Q 038801 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS----SG----------LQLDVG--NYDALIEASITSQD 453 (662)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g----------~~~~~~--~~~~li~~~~~~g~ 453 (662)
++..+.+.|+++ ++..+...|-.-.+.+-.+++.-.+.. .| -.|... ++-.+++.|-+.|+
T Consensus 310 yL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 310 YLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 777788888654 333444433332222211222222211 11 134443 44556788889999
Q ss_pred HHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 038801 454 FQSAFSLFRDMREARIYDL-KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTL 532 (662)
Q Consensus 454 ~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (662)
++.|+.+++..+++ .|+ ...|..=.+.+...|.+++|..++++..+- -.+|...=+--..-..++.+.++|.++.
T Consensus 387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999999998876 343 233444447889999999999999998763 2345433334555566889999999999
Q ss_pred HHHHhCCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 533 RRMIFLQFEPNDQ--------TYLSL--INGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 533 ~~m~~~~~~p~~~--------~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
......|. +.. .|-.+ ..+|.+.|++..|++-|..+...+.
T Consensus 463 skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 463 SKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99988774 322 22222 3467778888888888877765444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=86.01 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 268 (662)
||+.+||++|++|++. |++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~-~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKA-GKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 6777777777777776 7777777777777777777777777777777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-12 Score=84.58 Aligned_cols=50 Identities=32% Similarity=0.602 Sum_probs=48.0
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999975
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-06 Score=84.68 Aligned_cols=437 Identities=11% Similarity=0.063 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHH
Q 038801 143 QTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYA 222 (662)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (662)
..+...+..+...|++..-...|+..+..-......-.....+.+....+-.+-+.+++.+..+ +.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---------~~P~~-- 171 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---------VAPEA-- 171 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---------cCHHH--
Confidence 4666677777888888888888888776433333334455667777777888888888888865 33433
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcC------CCCCcccHHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCCc--H
Q 038801 223 CNAALEGCCYGLQSVSDAEKVIETMSVLG------VRPNESSFGFLAYLYALKGLQEK---IVELESLMNEFGFSSQ--M 291 (662)
Q Consensus 223 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~~~~~g~~~~--~ 291 (662)
-+-.|..+++. +++++|-+.+....... .+.+-..|.-+-+..++..+.-. ...+++.+.. .-+| .
T Consensus 172 ~eeyie~L~~~-d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g 248 (835)
T KOG2047|consen 172 REEYIEYLAKS-DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLG 248 (835)
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHH
Confidence 56667777776 88888888887765321 13333344444444444433221 2233333322 2244 3
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHh----------------cCC------HHHH
Q 038801 292 VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQ----------------NGN------VKGL 349 (662)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------------~~~------~~~a 349 (662)
..|++|.+-|.+.|.++.|..+|++.+..-. .+.-|..+-++|++ .|+ ++-.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~------tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVM------TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe------ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 5688888888888888888888888877521 33334444333331 111 1222
Q ss_pred HHHHHHHHHhCCCCcccccchH-------HH-HHHHHHhcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHH
Q 038801 350 ANLIIEAQKLEPSGIVVDRSVG-------FG-IISACVNLGLSDKAHSILDEMNACGCSVG------LGVYVPTLKAYCK 415 (662)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~~-------~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~ 415 (662)
+..|+.+.. ...+-.|++.. .. +=..-+..|+..+-..+|.+..+. +.|- ...|..+.+.|-.
T Consensus 323 ~a~~e~lm~--rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMN--RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHh--ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 333333322 11111111111 00 111122345667777777777664 2222 2467888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-----------C------Cccc
Q 038801 416 EHRTAEATQLVMDISSSGLQLD---VGNYDALIEASITSQDFQSAFSLFRDMREARIY-----------D------LKGS 475 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~ 475 (662)
.|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+++.+......-. + +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999886533211 234444445555677888888887776543111 1 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH-DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLING 553 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~ 553 (662)
|..+++.--..|-++....+++++.+-.-..|.+. -|..+ +-...-++++.++|++-+..=-.|++ ..|+..+..
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 44444555556677777777777766433333321 12222 22344566777777666654334454 356666555
Q ss_pred HHh---cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHH--HHHHccCchHHHHHHHHHHH
Q 038801 554 YVT---AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFL--YALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 554 ~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~ 613 (662)
+.+ ....+.|..+|++.. + |.+|...-+-.|+ ..-.+-|-...|++++++..
T Consensus 557 fi~rygg~klEraRdLFEqaL-------~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQAL-------D-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHH-------h-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 554 245677777777777 3 5555542222222 22234566677777777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-07 Score=84.61 Aligned_cols=305 Identities=10% Similarity=-0.024 Sum_probs=213.4
Q ss_pred HHHhcCCCCCcccHHHHHHHHHH--cCCHHHHHHHHHHHHhcC-CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCC
Q 038801 246 TMSVLGVRPNESSFGFLAYLYAL--KGLQEKIVELESLMNEFG-FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGN 322 (662)
Q Consensus 246 ~m~~~g~~p~~~t~~~li~~~~~--~g~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 322 (662)
.|....+.|...+...-+.++++ .++...+.+.+-.+.... ++-|+.....+.+++...|+.++|...|++..--
T Consensus 184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-- 261 (564)
T KOG1174|consen 184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-- 261 (564)
T ss_pred hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--
Confidence 44444556666666666666654 455566666665555443 5567888999999999999999999998766544
Q ss_pred CCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038801 323 MEQSDFSKETYC---EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC 399 (662)
Q Consensus 323 ~~~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 399 (662)
|+.+.. ....-+.+.|+.+....+...+-.... -....|..-........+++.|..+-++.++..
T Consensus 262 ------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 262 ------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred ------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 332222 222334577888887777776643211 122223333344456678888988888887764
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
+-+...|-.-...+...|+.++|.-.|...... .| +..+|.-|+.+|...|++.+|.-.-+...+. .+.+..+...
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 445556666667788899999999999988765 54 7889999999999999999998776665543 2334444444
Q ss_pred HH-HHHHh-cCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 479 IM-TGLME-NHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 479 ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
+. ..|.- ..--++|.+++++..+. .|+ ....+.+...+...|..+.+..++++.... .||....+.|.+.+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 42 33332 22347888888886653 444 345677778888999999999999998874 899999999999999
Q ss_pred hcCCHHHHHHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~ 571 (662)
..+.+++|+..|....
T Consensus 483 A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKAL 498 (564)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 9999999999999888
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-09 Score=110.74 Aligned_cols=147 Identities=10% Similarity=-0.053 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDK 386 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 386 (662)
.++|...+.+.++..+. +...|..+...+...|++++|...|++..++.|. +...+..+...+...|++++
T Consensus 320 ~~~A~~~~~~Al~ldP~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-----NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI----SADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred HHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHH
Confidence 34444444444443221 3344444444444444444444444444332111 11223333444444444444
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
|...+++..+.. +.+...+..++..+...|++++|...+++..+.. .| +...+..+..++...|+.++|...+.++
T Consensus 391 Ai~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 391 ALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 444444444432 1111122222223333444444444444443321 11 2222333444444444444444444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-07 Score=86.12 Aligned_cols=460 Identities=11% Similarity=0.045 Sum_probs=258.0
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 038801 110 IAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICR 189 (662)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (662)
+.-+....++..+...++.-...-++.. - .+-.-+...+.+.|++++|+.++..+.+.. .++.....++ ...+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE--~--~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnL-Acc~F 102 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE--D--SLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNL-ACCKF 102 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh--H--HHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhH-HHHHH
Confidence 6666666666666666554321111111 1 122224555567777888887777777643 2333333332 22222
Q ss_pred cCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH-HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 038801 190 KNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA-LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268 (662)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 268 (662)
-.|.+.+|..+-.+. |+....+.+ +....+ .++-++-..+-+.+.+.- .---+|......
T Consensus 103 yLg~Y~eA~~~~~ka-------------~k~pL~~RLlfhlahk-lndEk~~~~fh~~LqD~~-----EdqLSLAsvhYm 163 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKA-------------PKTPLCIRLLFHLAHK-LNDEKRILTFHSSLQDTL-----EDQLSLASVHYM 163 (557)
T ss_pred HHHHHHHHHHHHhhC-------------CCChHHHHHHHHHHHH-hCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHH
Confidence 356666666655543 333333333 333333 366666665555554321 111223333333
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHH-HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHH
Q 038801 269 KGLQEKIVELESLMNEFGFSSQMVFYSSLI-SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVK 347 (662)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 347 (662)
.-.+.+|.+++......+ |+-...|.-+ -+|.+.+-++-+.+++.-.+...+. ++..-|.......+.-+-.
T Consensus 164 R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-----StiA~NLkacn~fRl~ngr 236 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-----STIAKNLKACNLFRLINGR 236 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-----cHHHHHHHHHHHhhhhccc
Confidence 344677777777776654 5544444433 3455666666666655544544322 4445555444444433333
Q ss_pred HHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 348 GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL-----GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|.+-..++.. ++.-. ...+.-.++. .+-+.|.+++--+.+. .|. .--.|+-.|.+.+++.+|
T Consensus 237 ~ae~E~k~lad----N~~~~----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 237 TAEDEKKELAD----NIDQE----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred hhHHHHHHHHh----ccccc----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHH
Confidence 33333333322 11100 1122223332 2345666666555542 232 223355568889999999
Q ss_pred HHHHHHHHhCCCCCC-hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCHHHHH
Q 038801 423 TQLVMDISSSGLQLD-VGNYDALIEASITSQ-------DFQSAFSLFRDMREARI-YDLKGSYLTIMTGLMENHRPELMA 493 (662)
Q Consensus 423 ~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~ 493 (662)
..+..++. |. ..-|-.-.-.++..| ...-|.+.|+-.-+.+. ..+..--.++...+.-..++++++
T Consensus 305 ~~L~Kdl~-----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 305 ISLCKDLD-----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred HHHHhhcC-----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 98877663 32 222221111222333 35556666666555554 344445666777777778899999
Q ss_pred HHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS-LINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.+++.+..- -...|...| .+.++++..|++.+|+++|-++....++ |..+|.+ |.++|.+.++++.|-.++-.+.
T Consensus 380 ~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~- 455 (557)
T KOG3785|consen 380 TYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN- 455 (557)
T ss_pred HHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC-
Confidence 999888763 333344444 4778999999999999999888754443 4566654 5667888899998866554333
Q ss_pred hhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 038801 573 KISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMEN 631 (662)
Q Consensus 573 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~ 631 (662)
-..+. .....+..-|.+++.+--|-+.|+.+...++.|..|.-..++|..
T Consensus 456 ---------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 456 ---------TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACAG 506 (557)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHHH
Confidence 33333 344555667999999999999999999999999999988888864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-09 Score=109.89 Aligned_cols=147 Identities=7% Similarity=-0.132 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (662)
+++|...+++..+.+ +.+...+..+..++...|++++|...|++..+. .| +...+..+..++...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555555443 334444445555555555555555555555544 22 23344444555555555555555555
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 463 DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 463 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
+..+.+ |.+...+..++..+...|++++|...+.+..+.. .| +...+..+..+|...|+.++|.+.++++.
T Consensus 397 ~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 555443 1111122222333334444555555544443321 11 12223334444444555555555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-09 Score=97.29 Aligned_cols=194 Identities=9% Similarity=0.020 Sum_probs=117.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcc
Confidence 34444455555555555555554432 23344555555566666666666666665555421 13345555556666666
Q ss_pred CHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 453 DFQSAFSLFRDMREARI-YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++++|...+++..+... +.....+..+...+...|+.++|...+++.....+ .+...+..+...+...|++++|...
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666654321 12223455556666667777777777776665322 1344677777888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 532 LRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 532 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+++..+. ...+...+..+...+...|+.++|..+++.+.
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888775 23345666677777777888888888877766
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-09 Score=103.71 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=169.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-C
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNAC-----GC-SVGL-GVYVPTLKAYCKEHRTAEATQLVMDISSS-----GL-Q 435 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 435 (662)
.+...+...|...|+++.|+.+++..++. |. .|.. ...+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666777777777777777665543 21 1222 23334666778888888888888887543 21 2
Q ss_pred C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-----CC-CCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhC----C
Q 038801 436 L-DVGNYDALIEASITSQDFQSAFSLFRDMREA-----RI-YDL-KGSYLTIMTGLMENHRPELMAAFLDEVVED----P 503 (662)
Q Consensus 436 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~ 503 (662)
| -..+++.|..+|.+.|++++|..++++..+- +. .+. ...++.+...|+..+++++|..++.+..+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2356777777888888888888877765531 11 122 234566667788888899888888775442 1
Q ss_pred CCc-cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 504 RVE-VK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFL------QFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 504 ~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+.. +. ..+|+.|...|...|++++|.+++++.+.. +..+. ...++.|...|.+.+++.+|.++|.+...+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 11 357999999999999999999999998862 11222 3578899999999999999999999988776
Q ss_pred cccCCCCC-cccH-HHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 575 STDGQKGI-KFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 575 ~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+ ..|. .|+. .+|.-|...|.+.|+++.|.++.+...
T Consensus 440 ~---~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 K---LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H---HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 2332 3444 788999999999999999999998874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=98.97 Aligned_cols=232 Identities=10% Similarity=-0.025 Sum_probs=124.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
+.+.++|.+.|.+.+|++.|+.-.+. .|-+.||..|-.+|.+.++++.|+.+|.+-.+.- |-++.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 44555666666666666666555554 4455555555666666666666666665555542 33333333344455555
Q ss_pred CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038801 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMM 566 (662)
Q Consensus 487 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 566 (662)
++.++|.++++...+..+. ++....++...|.-.++.|-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~~~--nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI--NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc--cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 5666666666665553222 3333444455555556666666666666666543 455566666666666666666666
Q ss_pred HHHHHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHhhhhhhhHHHHH
Q 038801 567 WHEIKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAFMENHKKLKVAKLRKR 643 (662)
Q Consensus 567 ~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~~~~~~~~a~~~~~ 643 (662)
|++.. ..--.|+. .+|..|.....-.|++..|.+.|+-+...+.... .+..+.......|+++.|+.++.
T Consensus 381 f~RAl-------stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 381 FQRAL-------STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHH-------hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 66655 22222332 3444555555556666666666666555444432 33333333344566666666665
Q ss_pred HHHhhHHH
Q 038801 644 NFKKMEAL 651 (662)
Q Consensus 644 ~~~~l~p~ 651 (662)
.+..+.|.
T Consensus 454 ~A~s~~P~ 461 (478)
T KOG1129|consen 454 AAKSVMPD 461 (478)
T ss_pred HhhhhCcc
Confidence 55555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-08 Score=98.58 Aligned_cols=291 Identities=11% Similarity=0.069 Sum_probs=202.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG-FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC 414 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 414 (662)
....+...|++++|++.+++-. ...+|...+ ......+.+.|+.++|..++..+++++ +.|..-|..+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~-----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE-----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh-----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3455678899999999997743 334454444 456788889999999999999999987 556666666666663
Q ss_pred Hc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 415 KE-----HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ-SAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 415 ~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
-. ...+...++|+++... -|.......+.-.+.....+. .+..++..+..+|+|+ +|+.|-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 33 2577788899988776 344444433333333323333 4556777888888755 56666666776666
Q ss_pred HHHHHHHHHHHhhCC-------------CCccchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 038801 489 PELMAAFLDEVVEDP-------------RVEVKTH--DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLIN 552 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~ 552 (662)
.+....++....... .-.|... ++.-+...|-..|++++|++.+++.+++ .|+. ..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 666666666654321 1123333 4455677888999999999999999986 6775 68888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC--------HHhH
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD--------KWKY 624 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------~~~~ 624 (662)
.+-+.|++.+|.+.++..+ ..+. -|..+=+-....+.++|++++|.+++......+..|. .|..
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar-------~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEAR-------ELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHCCCHHHHHHHHHHHH-------hCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 9999999999999999999 3332 2555556667778899999999999999877665432 2333
Q ss_pred H--HHHHHHhhhhhhhHHHHHHHHh
Q 038801 625 K--QAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 625 ~--~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+ ...+...|++..|.+.+..+.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 5566667888888776655554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=102.06 Aligned_cols=245 Identities=11% Similarity=0.093 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHHc-----C--
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSS-----GL-QLDVG-NYDALIEASITSQDFQSAFSLFRDMREA-----R-- 468 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-- 468 (662)
..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++..- |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666899999999999999999887654 21 23333 3344677889999999999999998752 2
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-ccch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED----PRV-EVKT-HDWNSIIHAFCKAGRLEDAKRTLRRMIFL---Q 539 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 539 (662)
.+....+++.|...|.+.|++++|..++++..+- .+. .|.+ ..++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2334467788888999999999998888875431 122 2222 34677778889999999999999877652 1
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH---
Q 038801 540 FEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS--- 612 (662)
Q Consensus 540 ~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m--- 612 (662)
+.++. .+|+.|...|.+.|++++|.++++++..+..+.......-....++.|...|.+.+++.+|.++|.+.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22322 58999999999999999999999999977664422222223467888999999999999999998775
Q ss_pred -HhCCCC-CC---HHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 613 -QEMKVF-VD---KWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 613 -~~~~~~-p~---~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+..|+. |+ .+..+...+...|++|.|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344554 55 344446677888999999999888774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-07 Score=90.69 Aligned_cols=297 Identities=13% Similarity=0.022 Sum_probs=202.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHH
Q 038801 148 LLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAAL 227 (662)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 227 (662)
....+...|++++|+..++.-.+ ...+...+.......+.+.|+.++|..++..+.. ..|+...|-..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~---------rNPdn~~Yy~~L 78 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELID---------RNPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCCCcHHHHHHH
Confidence 45667888999999999987654 3567778888889999999999999999999987 466666655555
Q ss_pred HHHh-cc----CCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 038801 228 EGCC-YG----LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ-EKIVELESLMNEFGFSSQMVFYSSLISGY 301 (662)
Q Consensus 228 ~~~~-~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 301 (662)
..+. .. ..+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|+++ +++.|-..|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly 153 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLY 153 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHH
Confidence 4443 21 13567788899988664 35544444333222222222 35566777778888633 456666667
Q ss_pred HhcCChhhHHHHHHHHHcCCCCC----------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc-c
Q 038801 302 VKLGNLESASRTILLCLGGGNME----------QSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD-R 368 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~----------~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~ 368 (662)
....+.+-..+++.......... .-.|+.. ++.-+...|-..|++++|++++++... ..|+ .
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~-----htPt~~ 228 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE-----HTPTLV 228 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCcH
Confidence 65555555666655554432111 1234443 345667778889999999999998765 2343 3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh--------
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN-------- 440 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-------- 440 (662)
..|..-...+-+.|++.+|.+.++.....+ .-|..+=+-.+..+.++|+.++|.+++......+..|-...
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 345566778888999999999999888876 45667777778888899999999999988887765332211
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
......+|.+.|++..|++.|..+.+
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 13345678888888888888777665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-07 Score=84.19 Aligned_cols=445 Identities=10% Similarity=0.024 Sum_probs=201.2
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHH-HHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNS-LIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMR 153 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (662)
+..+....++..|+.+++.-...+-.-. ...+. +..++...|+++++...+..+ +.+ ..++....-.|.-.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~---~~~--~~~~~el~vnLAcc~F 102 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFL---MNK--DDAPAELGVNLACCKF 102 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHH---hcc--CCCCcccchhHHHHHH
Confidence 4455556677777777666553332211 12333 333444556655555544433 332 2233344444444445
Q ss_pred hcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhcc
Q 038801 154 NANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYG 233 (662)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 233 (662)
-.|.+.+|..+-... |.+.....+|.++..+.++-++-..+-+.+.. ..-|.. ++.+.....
T Consensus 103 yLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD---------~~EdqL---SLAsvhYmR 164 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD---------TLEDQL---SLASVHYMR 164 (557)
T ss_pred HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---------hHHHHH---hHHHHHHHH
Confidence 556666666654443 33344455666666666666665555554432 111111 122222222
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 038801 234 LQSVSDAEKVIETMSVLGVRPNESSFGFLAY-LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASR 312 (662)
Q Consensus 234 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 312 (662)
-.+++|+++|...... .|+-...|.-+. +|.+..-++-+.++++-..+. ++-+....|.......+.-.-..|.+
T Consensus 165 -~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 165 -MHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred -HHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 4566777777776644 244444444332 344556666666666655543 22223344443333333212122222
Q ss_pred HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHH
Q 038801 313 TILLCLGGGNMEQSDFSKETYCEVVKGFLQN-----GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKA 387 (662)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 387 (662)
-..+..+.... .| -.+.-+++. .+-+.|++++-.+.+ +.|.. -..++--|.+.+++.+|
T Consensus 241 E~k~ladN~~~--------~~-~f~~~l~rHNLVvFrngEgALqVLP~L~~-----~IPEA--RlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 241 EKKELADNIDQ--------EY-PFIEYLCRHNLVVFRNGEGALQVLPSLMK-----HIPEA--RLNLIIYYLNQNDVQEA 304 (557)
T ss_pred HHHHHHhcccc--------cc-hhHHHHHHcCeEEEeCCccHHHhchHHHh-----hChHh--hhhheeeecccccHHHH
Confidence 22333332110 00 111222222 233445555444322 11111 11233334455555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHH-----HcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHHHHH
Q 038801 388 HSILDEMNACGCSVGLGVYVPTLKAYC-----KEHRTAEATQLVMDISSSGLQLDV-GNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 388 ~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
..+.+.+.- ..|-......++.+-. ....+.-|...|+-.-..+..-|. .--.++..++.-..++|+++..+
T Consensus 305 ~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 305 ISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred HHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 555555433 2343333333332221 122344444455444443333222 22333444444455566666665
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN-SIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
+.+...-...|. .-..+.++.+..|.+.+|+++|-.+... .++ |..+|. .|.++|.+.++.+.|.+++-++-.
T Consensus 383 nSi~sYF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--- 456 (557)
T KOG3785|consen 383 NSIESYFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--- 456 (557)
T ss_pred HHHHHHhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---
Confidence 555544333332 2233556666666666666666555431 222 233443 344566677777766666554431
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 541 EPNDQ-TYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 541 ~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
..+.. ....+...|.+.+.+--|-+.|+++.
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11222 33344455666666666666666666
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-06 Score=82.37 Aligned_cols=296 Identities=9% Similarity=-0.080 Sum_probs=185.3
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHH
Q 038801 150 GSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEG 229 (662)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (662)
.+.+..++...|...+--+......+++......+...+...|+.++|+..|++... ..|+..+---+-..
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---------~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---------ANPDNVEAMDLYAV 274 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---------CChhhhhhHHHHHH
Confidence 334455666666666666666666777777777788888888888888888888754 55655432222222
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhh
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (662)
+....|+.+....+...+.... +-+...|..-....-...+++.|..+-++..+.+ +-+...|-.-...+...|+.++
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHH
Confidence 2222377777777766665321 1222223333334445667777777777766653 2334444444456667788888
Q ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHH-HHHH-hcCChHHH
Q 038801 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGII-SACV-NLGLSDKA 387 (662)
Q Consensus 310 A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a 387 (662)
|.-.|.....-.+. +...|.-|+.+|...|.+.+|.-+-+...+ -+..+..+...+. ..|. ...--++|
T Consensus 353 A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~----~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQKRFKEANALANWTIR----LFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred HHHHHHHHHhcchh-----hHHHHHHHHHHHHhhchHHHHHHHHHHHHH----HhhcchhhhhhhcceeeccCchhHHHH
Confidence 77776665544322 677888888888888888887776655433 1222333333221 1221 22234677
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 388 HSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 388 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.++++.-++.. +.-....+.+...+...|+.+++..+++.-... .||....+.|.+.+...+.+++|++.|......
T Consensus 424 Kkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 77777766643 223455666677777888888888888887765 678888888888888888888888888877765
Q ss_pred C
Q 038801 468 R 468 (662)
Q Consensus 468 ~ 468 (662)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 4
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-08 Score=92.20 Aligned_cols=230 Identities=10% Similarity=0.074 Sum_probs=193.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHcC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNY-DALIEASITS 451 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~ 451 (662)
.+..+|.+.|.+.+|++.++..++. .|-+.||-.|-++|.+..+...|+.+|.+-.+. .|..+|| .-+...+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 4889999999999999999998886 466678889999999999999999999998876 5655554 4566778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++.++|.++|+...+.. +.++.....+..+|.-.++++.|..++.++..- |+. +...|+.+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998875 667778888888999999999999999999885 554 456788898899999999999999
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHH
Q 038801 532 LRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 532 ~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
|++....-..|+. ..|-.|.......||+..|.+.|+-.. . ..++. ..++.|...-.+.|++++|..+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL-------~--~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL-------T--SDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh-------c--cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 9999987656665 478888888888999999999999888 2 33443 7888888888899999999999
Q ss_pred HHHHHhCCCC
Q 038801 609 VEKSQEMKVF 618 (662)
Q Consensus 609 ~~~m~~~~~~ 618 (662)
++...+..+.
T Consensus 452 l~~A~s~~P~ 461 (478)
T KOG1129|consen 452 LNAAKSVMPD 461 (478)
T ss_pred HHHhhhhCcc
Confidence 9998765544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-06 Score=83.09 Aligned_cols=452 Identities=10% Similarity=-0.002 Sum_probs=239.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
+=++.+...|++++|+.....+...+ |++......=+-...+.+.+++|+++.+.- +-..++|..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~-------------~~~~~~~~~ 81 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKN-------------GALLVINSF 81 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc-------------chhhhcchh
Confidence 34556667778888888888887754 444333222222334678888888665542 111222222
Q ss_pred --HHHH--hccCCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHH
Q 038801 227 --LEGC--CYGLQSVSDAEKVIETMSVLGVRPNES-SFGFLAYLYALKGLQEKIVELESLMNEFGFSS-QMVFYSSLISG 300 (662)
Q Consensus 227 --l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~ 300 (662)
=.+| .+ .+..++|+..++ |..++.. +...-...|.+.|++++|.++|+.+.+.+..- +...-..++.+
T Consensus 82 ~fEKAYc~Yr-lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 82 FFEKAYCEYR-LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred hHHHHHHHHH-cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 2233 33 388888888887 3344443 44444567778899999999999998776321 12222222221
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------cccc
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYC---EVVKGFLQNGNVKGLANLIIEAQKLEPSG----------IVVD 367 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~----------~~~~ 367 (662)
- ..-.+. +.+.... .| ..+|. .....+...|++.+|+++++...++-... +.-+
T Consensus 156 ~----a~l~~~--~~q~v~~------v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~e 222 (652)
T KOG2376|consen 156 A----AALQVQ--LLQSVPE------VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEE 222 (652)
T ss_pred H----HhhhHH--HHHhccC------CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence 1 111111 1222222 12 22333 23445667899999999998873211111 1111
Q ss_pred cchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH---HHHHcCC-HH-HHHHHHHHHHhCCC-------
Q 038801 368 RSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK---AYCKEHR-TA-EATQLVMDISSSGL------- 434 (662)
Q Consensus 368 ~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~---~~~~~g~-~~-~A~~~~~~m~~~g~------- 434 (662)
..+.. -+.-++-..|+-++|..++...++.. .+|........+ ++..-.+ .+ .++..++.......
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 11111 24455667899999999999998886 344422222211 1111111 11 12222222111100
Q ss_pred ---CCChhhH-HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCccc
Q 038801 435 ---QLDVGNY-DALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME--NHRPELMAAFLDEVVEDPRVEVK 508 (662)
Q Consensus 435 ---~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~ 508 (662)
+...... +.++..|. +..+.+.++-..... ..|. ..+.+++..+.+ ......+.+++....+..+.. .
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~-s 375 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEK-S 375 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch-h
Confidence 0011112 22222222 233444433332211 1222 345555554433 234677788887777653332 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLR--------RMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK 580 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 580 (662)
..+.-.++......|+++.|.+++. ...+.+..|-.+ ..+...+.+.++-+.|..++++...+.....
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~-- 451 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQ-- 451 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhc--
Confidence 3455667788889999999999999 666666666554 4455666777777788888888876555321
Q ss_pred CCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHH
Q 038801 581 GIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRN 644 (662)
Q Consensus 581 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~ 644 (662)
.-.+.. .++..+...-.+.|+-++|...++++.+.++. .+....+..+ ...-|.+.|..+.++
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a-~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTA-YARLDPEKAESLSKK 516 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHH-HHhcCHHHHHHHhhc
Confidence 111222 44555555566889999999999999774433 2233222222 222355555554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-05 Score=77.05 Aligned_cols=454 Identities=12% Similarity=0.083 Sum_probs=252.0
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 038801 73 TNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 73 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (662)
+-+..+...+++++|.....++...++. +...+..-+-+++..++++++.. ..+..+.......|. +=++|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk-------~ikk~~~~~~~~~~~-fEKAY 87 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALK-------LIKKNGALLVINSFF-FEKAY 87 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHH-------HHHhcchhhhcchhh-HHHHH
Confidence 3455667789999999999999886633 34445555556666665433332 223433221111221 23444
Q ss_pred --HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH
Q 038801 153 --RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC 230 (662)
Q Consensus 153 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (662)
.+.+..++|+..++ +..+.+.....+-...+.+.|++++|.++|+.+.+ .+...+..-+.+-
T Consensus 88 c~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-----------n~~dd~d~~~r~n 151 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-----------NNSDDQDEERRAN 151 (652)
T ss_pred HHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------cCCchHHHHHHHH
Confidence 48899999999888 33334444455556677799999999999999854 2222232222221
Q ss_pred hccCCChhHHHHHHHHHHhcCCCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHhcC-------CCCcH-------Hh
Q 038801 231 CYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY---LYALKGLQEKIVELESLMNEFG-------FSSQM-------VF 293 (662)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~---~~~~~g~~~~a~~~~~~~~~~g-------~~~~~-------~~ 293 (662)
+...+....+. .|......| ..+|..+.+ .+...|++.+|+++++...+.+ -.-+. .+
T Consensus 152 l~a~~a~l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 152 LLAVAAALQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHhhhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 11101111111 233333333 446666654 4456899999999999884322 00111 11
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHHhCCC------
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET----YCEVVKGFLQNGNVK-GLANLIIEAQKLEPS------ 362 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~------ 362 (662)
---|.-.+-..|+..+|..+|...++.... |... -|.|+..-....-++ .++..++....-...
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 223445667889999999999998887532 3322 222222211111111 122222221100000
Q ss_pred -CcccccchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCh
Q 038801 363 -GIVVDRSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK--EHRTAEATQLVMDISSSGLQLDV 438 (662)
Q Consensus 363 -~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~ 438 (662)
.-.-.....+ .++..+. +..+.+.++...+. +..|. ..+.+++....+ .....++.+++...-+....-..
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 0000001111 1222222 22233333322211 12233 334444433332 33577888888888776322234
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHH--------HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc
Q 038801 439 GNYDALIEASITSQDFQSAFSLFR--------DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED----PRVE 506 (662)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 506 (662)
...-.+++.....|+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++++...- ....
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 566677788899999999999999 555555555 46777777888888777777777665431 1111
Q ss_pred cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 507 VK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 507 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
+. ..++..+...-.+.|+.++|..+++++.+.. .+|..+...++.+|++. +.+.|..+-..+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 11 1233444444567899999999999999853 56778999999999884 577777664433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.1e-06 Score=83.07 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=137.9
Q ss_pred HHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHH-----HHhCCCCCChHHHHHHHHHH
Q 038801 78 SLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYV-----IEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 78 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ll~~~ 152 (662)
|+.-|+.+.|.+-.+.++ +...|..+.+.|.+..+.+-+.-.+..+... ++.....++ .+-..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 444677777777666653 4556888888888877665555444332211 111111121 2222233344
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc
Q 038801 153 RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY 232 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (662)
...|..++|+.++.+-++ +.+|-.+|-..|.+++|.++-+.=-+ +.-. .||...-.-+-.
T Consensus 811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DR---------iHLr-~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDR---------IHLR-NTYYNYAKYLEA 870 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccc---------eehh-hhHHHHHHHHHh
Confidence 577888888888888877 45677778788888888887665322 2222 233333333333
Q ss_pred cCCChhHHHHHHHHHH----------hcC---------CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHh
Q 038801 233 GLQSVSDAEKVIETMS----------VLG---------VRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVF 293 (662)
Q Consensus 233 ~~~~~~~a~~~~~~m~----------~~g---------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 293 (662)
. ++.+.|++.|++-. ... -.-|...|..--.-+-..|+.+.|+.+|....+
T Consensus 871 r-~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 871 R-RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred h-ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 3 88888888777532 110 011122222222223345677777777766544
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK 358 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 358 (662)
|-.+++..|-.|+.++|-++-++. + |......+.+.|-..|++.+|..+|.+.+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es---g-------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES---G-------DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc---c-------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 445666677788888887763221 1 666777788888888999998888877654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4e-07 Score=79.08 Aligned_cols=196 Identities=14% Similarity=0.047 Sum_probs=124.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
+..|.-.|...|+...|..-+++..+. .| +..+|..+...|.+.|+.+.|.+-|++..... |.+..+.|....-+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 334455666777777777777776665 33 34566666667777777777777777766654 444455666666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a 563 (662)
..|++++|...|++...+....--..+|..+.-+..+.|+.+.|.+.|++.++. .|+. .+...+.....+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 666666666666666665332223446666776777777777777777777764 3433 4566666666777777777
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 564 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
..+++... ..+. ++.......|+.--+.|+.+.|.++=..+..
T Consensus 193 r~~~~~~~-------~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQ-------QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHH-------hccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777766 3443 6666666666666667777766666555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-05 Score=82.41 Aligned_cols=460 Identities=11% Similarity=-0.017 Sum_probs=267.2
Q ss_pred HHhhCChhHHHHH----HHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 038801 78 SLLTNNTDEAWKS----FKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMR 153 (662)
Q Consensus 78 ~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (662)
+.-+.+..++.-. +.++....+.-++..|..+.-++...|+...+.+.|+.... ...-..+.|..+...+.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~s 368 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYS 368 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHH
Confidence 4445566666544 34444445667899999999999999998888888887632 23344567888999999
Q ss_pred hcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhc-CCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc
Q 038801 154 NANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRK-NSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY 232 (662)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (662)
..|.-..|+.+++.-......|++.......-..|.+ .+.+++++..-.++...... ....+.|-.. -.+--+|..
T Consensus 369 aag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~-~~~~l~~~~~--l~lGi~y~~ 445 (799)
T KOG4162|consen 369 AAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG-QRSHLKPRGY--LFLGIAYGF 445 (799)
T ss_pred HhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh-hhhhhhhhHH--HHHHHHHHh
Confidence 9999999999999887755446666666666666653 35666666666555542211 1111222222 211111111
Q ss_pred c----------CCChhHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 038801 233 G----------LQSVSDAEKVIETMSVLG-VRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGY 301 (662)
Q Consensus 233 ~----------~~~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 301 (662)
. .....++++.+++..+.+ -.|+...| +---|+..++++.|.+...+..+.+-.-+...|..|.-.+
T Consensus 446 ~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvl 523 (799)
T KOG4162|consen 446 QARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVL 523 (799)
T ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 1 012345777777776654 23333333 3335667788999999999988886567788888888888
Q ss_pred HhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 302 VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
...+++.+|+.++...+.+.+. |-..-..-+..-..-++.++++.....+..+.... ......
T Consensus 524 Sa~kr~~~Al~vvd~al~E~~~-----N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~------------~~~q~~ 586 (799)
T KOG4162|consen 524 SAQKRLKEALDVVDAALEEFGD-----NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE------------YGVQQT 586 (799)
T ss_pred hhhhhhHHHHHHHHHHHHHhhh-----hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh------------hhHhhh
Confidence 8889999999998888877422 11111111222223556666665555544321100 000001
Q ss_pred CChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC------hhhHHHHHHHHHcC
Q 038801 382 GLSDKAHSILDEMNAC--GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ--LD------VGNYDALIEASITS 451 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~------~~~~~~li~~~~~~ 451 (662)
++-....+....+.-. .......++.-+.......+....-... +...-+. |+ ...|......+.+.
T Consensus 587 ~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~ 663 (799)
T KOG4162|consen 587 LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLS 663 (799)
T ss_pred hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 1111111111111100 0011112222222211111100000000 1111111 12 22455666677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 530 (662)
+..++|...+.+..... +.....|......+...|..++|.+.|.....- .|+ +..-.++..++.+.|+..-|..
T Consensus 664 ~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---dP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---DPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred CCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 88888877777766654 444456666667777788888888777776552 333 4467788888888888777777
Q ss_pred --HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 531 --TLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 531 --~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
++.++.+.+ .-+...|-.+...+-+.|+.++|.+.|+...+
T Consensus 740 ~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 740 RSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888888753 22557888888888888888888888887653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-06 Score=83.17 Aligned_cols=389 Identities=14% Similarity=0.097 Sum_probs=242.0
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChh
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 308 (662)
.+.. |+++.|+..|-+..... ++|..-|..=..+|+..|++++|.+=-.+-.+ +.|+ ...|+.+..++.-.|+++
T Consensus 12 a~s~-~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 12 AFSS-GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hccc-ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 3444 99999999999988765 45777788888899999999988776655555 4577 567999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHhCCCCcccccchHHHHHHHHHhc-
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLI------IEAQKLEPSGIVVDRSVGFGIISACVNL- 381 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~------~~m~~~~~~~~~~~~~~~~~ll~~~~~~- 381 (662)
+|+..|.+-++..+. +...++-+..++.-.. . +.+.| .................|..++...-+.
T Consensus 88 eA~~ay~~GL~~d~~-----n~~L~~gl~~a~~~~~--~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-----NKQLKTGLAQAYLEDY--A-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHHhhcCCc-----hHHHHHhHHHhhhHHH--H-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999988887433 5566666666662110 0 01111 1100000000011111222222222111
Q ss_pred ---------CChHHHHHHHH-----HHHHCC-------CCC----------------------ChhhHHHHHHHHHHcCC
Q 038801 382 ---------GLSDKAHSILD-----EMNACG-------CSV----------------------GLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 382 ---------~~~~~a~~~~~-----~m~~~~-------~~~----------------------~~~~~~~li~~~~~~g~ 418 (662)
..+..+.-.+. .+...| ..| -..-+..+.++..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 00111111100 000000 011 01134556777777888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH-------HHHHHHhcCCHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT-------IMTGLMENHRPEL 491 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~~~~~~~ 491 (662)
++.|.+-+....... -+..-++....+|...|.+.+....-...++.|- -...-|+. +..++.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 888888888877663 3555566667778888888777776666665542 11122232 3335566677888
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ-TYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
++.+|.+.... ...|+ ...+....+++....+...- +.|+.. -...-...+.+.|++..|+..|.++
T Consensus 317 ai~~~~kaLte-~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 317 AIKYYQKALTE-HRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHhhh-hcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888886654 22222 12334455566655555443 244432 2222366777889999999999999
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhH
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKME 649 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~ 649 (662)
+ .+. +-|...|.-...+|.+.|.+.+|++=.+.+.+.++. +..|..........+++..+...++..++++
T Consensus 385 I-------kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 I-------KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred H-------hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8 444 335688888888999999999999999998887654 3455555666677789999999999999999
Q ss_pred HHHH
Q 038801 650 ALIA 653 (662)
Q Consensus 650 p~~~ 653 (662)
|..+
T Consensus 457 p~~~ 460 (539)
T KOG0548|consen 457 PSNA 460 (539)
T ss_pred chhH
Confidence 8765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-07 Score=88.71 Aligned_cols=231 Identities=11% Similarity=-0.018 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 382 GLSDKAHSILDEMNACG-CSV--GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666532 122 134577777778888888888888888877632 25677888888888888888888
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 459 SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
..|++..+.. |.+..++..+...+...|++++|.+.|++..+..+-.|. .......+...++.++|.+.|++....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888764 445567777777888888888888888887764322221 111122234567889999999765543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 539 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
..|+...+ .+. ....|+..++ +.++.+.+.++.. ..+.| ....|..+...+.+.|++++|...|++..+.++
T Consensus 195 -~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~--~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 -LDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDN--TELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23332222 222 2334555444 3445554211110 01122 235788888899999999999999999887663
Q ss_pred CCCHHhHH
Q 038801 618 FVDKWKYK 625 (662)
Q Consensus 618 ~p~~~~~~ 625 (662)
|+...+.
T Consensus 268 -~~~~e~~ 274 (296)
T PRK11189 268 -YNFVEHR 274 (296)
T ss_pred -chHHHHH
Confidence 2444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-07 Score=90.37 Aligned_cols=219 Identities=12% Similarity=-0.057 Sum_probs=158.3
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHH
Q 038801 416 EHRTAEATQLVMDISSSG-LQLD--VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
.+..+.+..-+.++.... ..|+ ...|..+...|...|+.++|...|++..+.. |.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356677778887777542 1222 3567888888999999999999999999876 66778999999999999999999
Q ss_pred HHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...|++..+. .|+ ..+|..+..++...|++++|.+.|++..+. .|+..........+...+++++|+..+++..
T Consensus 118 ~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999874 333 567888888999999999999999999975 5654322222223345688999999997765
Q ss_pred HhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh---CCCC-----CCHHhHHHHHHHHhhhhhhhHHHHH
Q 038801 572 RKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE---MKVF-----VDKWKYKQAFMENHKKLKVAKLRKR 643 (662)
Q Consensus 572 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~-----p~~~~~~~~~~~~~~~~~~a~~~~~ 643 (662)
. ...|+...+ . ......|+..++ +.++.+.+ ..+. ++.|.++.......|+.+.|...++
T Consensus 193 -------~-~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 193 -------E-KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred -------h-hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1 223332221 2 223345665544 34444432 1111 3467777888888999999999999
Q ss_pred HHHhhHHHH
Q 038801 644 NFKKMEALI 652 (662)
Q Consensus 644 ~~~~l~p~~ 652 (662)
++++++|.+
T Consensus 261 ~Al~~~~~~ 269 (296)
T PRK11189 261 LALANNVYN 269 (296)
T ss_pred HHHHhCCch
Confidence 999999864
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-06 Score=83.93 Aligned_cols=150 Identities=12% Similarity=0.022 Sum_probs=82.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChh
Q 038801 235 QSVSDAEKVIETMSVLGVRPNES-SFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 308 (662)
|++++|.+++++..+. .|+.. .+.. ...+.. .+..+.+.+.+.. ..+..|+ ......+...+...|+++
T Consensus 57 g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 57 GDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred CCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 7777777777776654 23322 2221 112222 3334444444433 1112232 333344555667777777
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc--chHHHHHHHHHhcCChHH
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR--SVGFGIISACVNLGLSDK 386 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 386 (662)
+|.+.+.+.++..+. +...+..+...+...|++++|...+++.....+. .++. ..|..+...+...|++++
T Consensus 132 ~A~~~~~~al~~~p~-----~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 132 RAEEAARRALELNPD-----DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHH
Confidence 777777777665422 4556666677777777777777777766542221 1221 223456666677777777
Q ss_pred HHHHHHHHHH
Q 038801 387 AHSILDEMNA 396 (662)
Q Consensus 387 a~~~~~~m~~ 396 (662)
|..++++...
T Consensus 205 A~~~~~~~~~ 214 (355)
T cd05804 205 ALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHhc
Confidence 7777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-05 Score=79.90 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=76.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 038801 415 KEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAA 494 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 494 (662)
..+.+.+|+.+++.+.+. +.-..-|..+.+.|...|+++.|.++|-+. ..++--|..|.+.|+++.|.+
T Consensus 744 ~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 344455555555555543 222333445555555556666665555432 134444555555666555555
Q ss_pred HHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 495 FLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 495 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+-.+.. |....+..|-+-..-+-..|++.+|.++|-... .|+.. |..|-+.|..++.+++.++-.
T Consensus 813 la~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~a-----iqmydk~~~~ddmirlv~k~h--- 877 (1636)
T KOG3616|consen 813 LAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKA-----IQMYDKHGLDDDMIRLVEKHH--- 877 (1636)
T ss_pred HHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHH-----HHHHHhhCcchHHHHHHHHhC---
Confidence 544432 222233344444444445555555555543332 34332 344455555555555444322
Q ss_pred cccCCCCCccc--HHHHHHHHHHHHccCchHHHHHHHH
Q 038801 575 STDGQKGIKFE--HNLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 575 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
|+ ..|...+..-+...|++++|.+-|-
T Consensus 878 ---------~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 878 ---------GDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred ---------hhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 22 2344455555555666666555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.4e-06 Score=82.01 Aligned_cols=307 Identities=12% Similarity=-0.075 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
.|..+...+...|+.+.+.+.+....+..+... +..-.. .....+...|++++|.+++++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 344444444455555555444444433222211 111111 11223445667777777777666542 333333332 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 411 KAYCK----EHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 411 ~~~~~----~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
..+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 12222 3344444444433 1111222 2233344556677777888888777777765 4445566677777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCC
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKT--HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPNDQTY-L--SLINGYVTAEQ 559 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~~~ 559 (662)
.|++++|..++++.....+..++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 788888888777766542222332 2355677778888888888888888764321 1112111 1 22222233343
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-------C-CHHhHH--HHHH
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-------V-DKWKYK--QAFM 629 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-------p-~~~~~~--~~~~ 629 (662)
...+.. |+.+....... ..+ ............++...|+.++|...++.+....-. . .+...+ ....
T Consensus 241 ~~~~~~-w~~~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 241 VDVGDR-WEDLADYAAWH-FPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CChHHH-HHHHHHHHHhh-cCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 222222 23222111000 011 111122235666778888999999888887542211 1 111111 2233
Q ss_pred HHhhhhhhhHHHHHHHHhh
Q 038801 630 ENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 630 ~~~~~~~~a~~~~~~~~~l 648 (662)
...|+.+.|......++.+
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4557888887777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-05 Score=80.44 Aligned_cols=137 Identities=9% Similarity=0.043 Sum_probs=73.0
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI----IHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
.+.+...|.......-..+.+..|.+...+.+.-...+-+...|+.. ...++..|.++.|..-+..... ..|.
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdE 1039 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDE 1039 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHH
Confidence 34455556665555555666666655555543211122233445532 2334445666655444332221 1122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
..-.+-+..|. .|+++++++.|+++..... -.-+ ++....++.+...+|.-+.|...+-+....
T Consensus 1040 di~gt~l~lFf-kndf~~sl~~fe~aLsis~------se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1040 DIRGTDLTLFF-KNDFFSSLEFFEQALSISN------SESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHhhhhHHHHH-HhHHHHHHHHHHHHhhhcc------cccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 22222222233 4889999999999883221 1222 255666777777888888888887776554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-05 Score=80.12 Aligned_cols=312 Identities=10% Similarity=0.122 Sum_probs=187.4
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSF-----GFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-----~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
..+.++... +-+.+-+++++++.- .|+.++= |.||-. +-.-+..++.++.+.+...+ .|+ +..
T Consensus 989 ~tVkAfMta-dLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyD-a~~------ia~ 1056 (1666)
T KOG0985|consen 989 VTVKAFMTA-DLPNELIELLEKIVL---DNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYD-APD------IAE 1056 (1666)
T ss_pred HHHHHHHhc-CCcHHHHHHHHHHhc---CCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCC-chh------HHH
Confidence 444555554 666666666666542 2332221 122211 22233444555555544432 122 222
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACV 379 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~ 379 (662)
.....+-+++|+.+|.. ... +....+.||. .-+..+.|.++-++.. ...+|+.+..+-.
T Consensus 1057 iai~~~LyEEAF~ifkk-f~~--------n~~A~~VLie---~i~~ldRA~efAe~~n---------~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKK-FDM--------NVSAIQVLIE---NIGSLDRAYEFAERCN---------EPAVWSQLAKAQL 1115 (1666)
T ss_pred HHhhhhHHHHHHHHHHH-hcc--------cHHHHHHHHH---HhhhHHHHHHHHHhhC---------ChHHHHHHHHHHH
Confidence 33444556666666422 221 3444444443 2345556655555432 2345666777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 038801 380 NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (662)
+.|.+.+|++-|-+ ..|...|.-++....+.|.+++-.+++...+++.-.|.+. +.||-+|++.++..+.++
T Consensus 1116 ~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred hcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 77777777665532 2355677777777777777777777777666665444444 357777777777766555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038801 460 LFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (662)
.+ .-|+......+.+-|...+.++.|.-++..+. -|..|...+...|++..|...-++.
T Consensus 1188 fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKA---- 1246 (1666)
T KOG0985|consen 1188 FI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKA---- 1246 (1666)
T ss_pred Hh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 44 24555666677777777777777766665442 3777778888888888887765543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 540 FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 540 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
-+..||.-+-.+|...+.+.-| +|. ...+-....-..-++.-|-..|-++|-+.+++..
T Consensus 1247 --ns~ktWK~VcfaCvd~~EFrlA-----QiC-------GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1247 --NSTKTWKEVCFACVDKEEFRLA-----QIC-------GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred --cchhHHHHHHHHHhchhhhhHH-----Hhc-------CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 2567888888888877766544 445 4444555566778888899999999999988876
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-05 Score=80.32 Aligned_cols=251 Identities=13% Similarity=0.082 Sum_probs=155.2
Q ss_pred ChHHHHHHHH--HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCC--C
Q 038801 141 DFQTVHTLLG--SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDF--M 216 (662)
Q Consensus 141 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~ 216 (662)
|..|=..+++ .|...|+.+.|.+-.+-+... .+..-+..+|.+.+++|-|.-++-.|......+..+. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~-------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD-------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh-------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 3444444544 367788889888888777543 2355688888888888888888777755432211110 1
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHH
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (662)
.++. -.+-..+++..+|.+++|+.+|.+-+. |..|=+.|-..|.+++|.++-+.=.+..+ ..||-.
T Consensus 798 ~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 798 NGEE--DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred CCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 2221 112222333335999999999998875 33444667788999998888654333222 223333
Q ss_pred HHHHHHhcCChhhHHHHHHH----------HHcCCCC-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 038801 297 LISGYVKLGNLESASRTILL----------CLGGGNM-----EQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEP 361 (662)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~----------~~~~~~~-----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 361 (662)
...-+-..++++.|++.|++ |+.+.+. .....|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 44444556667766665433 3332110 00011333444444445568899999999887653
Q ss_pred CCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 362 SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS 430 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (662)
|.+++...|-.|+.++|.++-++- .|....-.+.+.|-..|++.+|..+|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667788888888888888876643 355566678888888888888888887654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-05 Score=77.29 Aligned_cols=192 Identities=18% Similarity=0.147 Sum_probs=107.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 038801 339 GFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (662)
.+.+.|+++.|..-|-+... ....+.+......+.+|+.+++.+.+.. .-...|..+...|...|+
T Consensus 715 hl~~~~q~daainhfiea~~------------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC------------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGD 780 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh------------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchh
Confidence 34455666666655544321 1224555556667777777777666653 223456666677777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDE 498 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 498 (662)
++.|+++|.+. ..++--|..|.+.|+|+.|.++-.+. .|...+...|..-..-+-+.|++.+|++++-.
T Consensus 781 fe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 781 FEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 77777777543 22445566677777777776665432 23333444455555556666777666666544
Q ss_pred HhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 499 VVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 499 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
+.+ | ..-|.+|-+.|..+..+++.++-. |+. .|...+..-+-..|+...|..-|-+.
T Consensus 850 i~~-----p-----~~aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 850 IGE-----P-----DKAIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred ccC-----c-----hHHHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 322 2 234566667777666666655432 332 35555555555566666665544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-06 Score=73.11 Aligned_cols=193 Identities=10% Similarity=-0.048 Sum_probs=145.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITS 451 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 451 (662)
-+.-+|...|+...|.+-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+. .| +....|....-+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 35667778888888888888888775 556677888888888888888888888888776 34 556777777888888
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 452 QDFQSAFSLFRDMREAR-IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
|++++|...|++....- ...-..||..+.-+..+.|+.+.|.++|++..+..+-. ..+.-.+.....+.|++..|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccchHHHH
Confidence 88888888888877653 22333577777777888888888888888877642322 2356677788888889999988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 531 TLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 531 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.++.....+. ++..+....|..-...|+-+.+-++=.++.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888887654 777777777777777888888877766666
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-05 Score=90.57 Aligned_cols=276 Identities=9% Similarity=-0.035 Sum_probs=129.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCChhhHHHHHH
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSILDEMNAC----GC-SVGLGVYVPTLK 411 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~ 411 (662)
..+...|++++|...+++.....+.+... -....+.+...+...|++++|...+++.... |. .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 33444445555544444443322222111 1122233334444455555555554444321 10 001123333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCC--CcccHHHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSS----GLQ--L-DVGNYDALIEASITSQDFQSAFSLFRDMREAR--IYD--LKGSYLTIM 480 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~ll 480 (662)
.+...|+++.|...+++.... |.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 455555555555555443221 111 1 12223333444444566666655555543321 011 112222333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC---CCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 038801 481 TGLMENHRPELMAAFLDEVVED---PRVEVKT--HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND---QTYLSLIN 552 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~ 552 (662)
..+...|+.+.|.+.+.+.... .+..... ..-...+..+...|+.+.|.+++............ ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 4455556666666555554321 1100000 00011223445577888888887665532111111 12345666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
++...|++++|...+++.....+ ..|..++. .+...+..++.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~---~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENAR---SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67778888888888888875433 22333332 456666777888899888888888886554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=89.87 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
.....+..|.+.++++.|.+.++.|.+. ..|. +...|..++.. .+.+.+|..+|+++. + ...++.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~-------~-~~~~t~ 201 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELS-------D-KFGSTP 201 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHH-------C-CS--SH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHH-------h-ccCCCH
Confidence 3344455555555555555555555542 2222 22223332222 123555555555554 2 223444
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhh-hhhHHHHHHHHhhHH
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKL-KVAKLRKRNFKKMEA 650 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~-~~a~~~~~~~~~l~p 650 (662)
.+.+.+..+....|++++|.+++++..+.++. |+....+...+...|+. +.+.+...++....|
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 55555555555555555555555555443333 33333322222333433 334444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00018 Score=70.65 Aligned_cols=426 Identities=10% Similarity=0.055 Sum_probs=239.1
Q ss_pred CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC
Q 038801 138 KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK 217 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (662)
.+-|..+|..|++-+... .++++...++++.. .+|....+...-+..-.+..+++..+++|.++.. ..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv---------kv 83 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLV---------KV 83 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH---------HH
Confidence 456788999999887766 89999999999976 4677766667667777788999999999999875 34
Q ss_pred ccHHHHHHHHHHHhccCCChhHH----HHHHHH-HHhcCCCCCccc-HHHHHH---------HHHHcCCHHHHHHHHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDA----EKVIET-MSVLGVRPNESS-FGFLAY---------LYALKGLQEKIVELESLM 282 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a----~~~~~~-m~~~g~~p~~~t-~~~li~---------~~~~~g~~~~a~~~~~~~ 282 (662)
-++..|...|.-..+..|+...+ .+.|+- |.+.|+.+-... |+..+. -+....+++...+++..+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 56777888777554443444442 222333 233454443332 332222 222334556667777776
Q ss_pred HhcCCCCcHHhHHHHH------HHH-------HhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc------
Q 038801 283 NEFGFSSQMVFYSSLI------SGY-------VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN------ 343 (662)
Q Consensus 283 ~~~g~~~~~~~~~~li------~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 343 (662)
....+.-=...|+-.. +-. -+...+-.|.+++.+.. .+++++.+.
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~----------------~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ----------------NLTRGLNRNAPAVPP 227 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH----------------HHHhhhcccCCCCCC
Confidence 6543211111221110 000 00111222222222211 111111110
Q ss_pred -CCHHH--HHHHHHHHHHhCC-CCcc-cccchHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCChhhHHH-----HHHH
Q 038801 344 -GNVKG--LANLIIEAQKLEP-SGIV-VDRSVGFGIISACVNLGLSDKAHSILDE-MNACGCSVGLGVYVP-----TLKA 412 (662)
Q Consensus 344 -~~~~~--a~~~~~~m~~~~~-~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~-----li~~ 412 (662)
|-.++ ..+++....+.+. .++. .+...... ...-++++ |.-.++.|++....+ .-+.
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~------------Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l 295 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTR------------RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDL 295 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHH------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Confidence 11111 1111111111000 1111 11100000 00001111 111122222211000 0112
Q ss_pred HHHcCC-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---cCCCHHHHHHHHHHHHHcC-CCCCcccHHHHHH
Q 038801 413 YCKEHR-------TAEATQLVMDISSSGLQLDVGNYDALIEASI---TSQDFQSAFSLFRDMREAR-IYDLKGSYLTIMT 481 (662)
Q Consensus 413 ~~~~g~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~ 481 (662)
+...|+ .+++..+++.....-..-+..+|..+.+.-- .....+.....+++....- +.|+ -+|-.++.
T Consensus 296 ~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn 374 (656)
T KOG1914|consen 296 LTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMN 374 (656)
T ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHH
Confidence 222233 4555666665544322223444443332211 1123566667777776544 3444 58888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY-LSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~ 560 (662)
...+..-+..|..+|.+..++....-++.+++++|.-|| .++.+-|.++|+--.+. .+|...| ...++-+...|+-
T Consensus 375 ~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 375 FIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcc
Confidence 999999999999999999998444458889999999887 57889999999987764 4555433 5667777888999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
..|..+|++.. ..++.|+. .+|..++.--..-|++..+.++-+++..
T Consensus 452 ~N~R~LFEr~l-------~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 452 NNARALFERVL-------TSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhHHHHHHHHH-------hccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999 66677765 8999999999999999999999888753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-07 Score=85.68 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=152.6
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
++.+.-.|++..++.-.+ ........+......+.+++...|+.. .++.. +... ..|.......+...+..
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~---~vl~e----i~~~-~~~~l~av~~la~y~~~ 78 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYD---SVLSE----IKKS-SSPELQAVRLLAEYLSS 78 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HH---HHHHH----S-TT-SSCCCHHHHHHHHHHCT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChh---HHHHH----hccC-CChhHHHHHHHHHHHhC
Confidence 445555788888886665 332222223344556667777777632 22222 2232 35666666555555554
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
.++-+.++.-+++.........+..+..+...++...|++++|++++... .+.......+..+.+.
T Consensus 79 ~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~- 144 (290)
T PF04733_consen 79 PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKM- 144 (290)
T ss_dssp STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHc-
Confidence 44555565555554443333334444555556677788888888877642 3455666777788886
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 310 (662)
++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|
T Consensus 145 ~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp T-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHH
T ss_pred CCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHH
Confidence 89999999998887642 33444445544432 23578888888887665 457788888888888888999999
Q ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 038801 311 SRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNV-KGLANLIIEAQK 358 (662)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 358 (662)
.+++.+.+...+. +..+...+|.+....|+. +.+.+++.+++.
T Consensus 221 e~~L~~al~~~~~-----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 221 EELLEEALEKDPN-----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCCC-CC-----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhccC-----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8888888766432 566666777777777776 556677777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.0004 Score=73.22 Aligned_cols=383 Identities=15% Similarity=0.099 Sum_probs=227.4
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHhhhC--CCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHH
Q 038801 69 TSLETNLHKSLLTNNTDEAWKSFKSLTAN--SLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVH 146 (662)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (662)
...+..+.++...+-+.+.+++++++.-. .+.-+...-|.++-.-.+..+ .++.+.+.+ .|...-.
T Consensus 985 e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~----trVm~YI~r--------LdnyDa~ 1052 (1666)
T KOG0985|consen 985 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR----TRVMEYINR--------LDNYDAP 1052 (1666)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh----HHHHHHHHH--------hccCCch
Confidence 33445566666677777777777776522 233334444554444444432 122222111 0111111
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+...+..++-+++|+.+|+...-.+ .....|+ -..++.+.|.+.-+++ - ....|..+
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~------~A~~VLi---e~i~~ldRA~efAe~~-----------n--~p~vWsql 1110 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNV------SAIQVLI---ENIGSLDRAYEFAERC-----------N--EPAVWSQL 1110 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccH------HHHHHHH---HHhhhHHHHHHHHHhh-----------C--ChHHHHHH
Confidence 24455566667777777776653211 1122222 2346666676665554 1 23468888
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN 306 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (662)
-.+-.+. |.+.+|++-|-+. -|...|.-++..+.+.|.+++-.+++...++..-+|.+ -+.||-+|++.++
T Consensus 1111 akAQL~~-~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1111 AKAQLQG-GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHhc-CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhch
Confidence 8888886 8888888776543 25667888889999999999888888888777666654 4578888998888
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDK 386 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 386 (662)
..+-++.+ . -||......+.+-|...|.++.|.-+|... .-|..+...+...|++..
T Consensus 1182 l~elE~fi----~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1182 LTELEEFI----A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV------------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHHHHh----c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh------------hhHHHHHHHHHHHHHHHH
Confidence 88776643 2 247777777778888888888887777543 236667777777788777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
|..--++. .+..||..+-.+|...+.+.-| +|-..++.....-..-++..|-..|.+++...+++....
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 76554332 3556777777777666554432 233222333445567788888888998888888876543
Q ss_pred cCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------ccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 467 ARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV------EVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 467 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
.. +.....|+.|.-.|.+- ++++..+.++-.-.+-++ .-....|+-++-.|.+-..++.|.-
T Consensus 1308 LE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1308 LE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred hh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 21 12223455555445443 333333333222211111 1123568888888887777776643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-07 Score=87.61 Aligned_cols=250 Identities=7% Similarity=0.035 Sum_probs=193.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQ 455 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 455 (662)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+. .| +....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3457788999999999988875 567889999999999999999999999999887 44 5677888888999999999
Q ss_pred HHHHHHHHHHHcCC------C--CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 456 SAFSLFRDMREARI------Y--DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 456 ~A~~~~~~m~~~~~------~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+|+..++.-+.... . ++...-.. ..+..........++|-++....+.++|..++..|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999998766531 0 00000000 22333334566677777777766766778889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHH
Q 038801 528 AKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAV 605 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 605 (662)
|...|+..+. ++|+. ..||-|...++...+.++|+.-|++.. .++|+- ....-|.-+|+..|.+++|
T Consensus 449 aiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---------qLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---------QLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---------hcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 9999999997 47865 799999999999999999999999999 677875 4445577889999999999
Q ss_pred HHHHHHHHhCCCC-------C----CHHhHHHHHHHHhhhhhhhHHHH
Q 038801 606 MQVVEKSQEMKVF-------V----DKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 606 ~~~~~~m~~~~~~-------p----~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
.+.|=....+... | .+|.++..++...++.+....+.
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9998665432111 1 48999987777777777555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.6e-06 Score=73.10 Aligned_cols=353 Identities=11% Similarity=-0.002 Sum_probs=203.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
-+++++..+.+..++..|++++....+.. |.+..-.+.|...|-+..++..|-.+++++.. ..|...-|
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---------l~P~~~qY 80 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---------LHPELEQY 80 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hChHHHHH
Confidence 35567777788888999999888877653 44555567777777788999999999999876 45666555
Q ss_pred HHH-HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH
Q 038801 224 NAA-LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY--LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISG 300 (662)
Q Consensus 224 ~~l-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 300 (662)
... -..+.+. +.+..|+++...|.+. |+...-..-+. ...+.+++..+..+.++....| +..+.+.....
T Consensus 81 rlY~AQSLY~A-~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCl 153 (459)
T KOG4340|consen 81 RLYQAQSLYKA-CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHh-cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhe
Confidence 432 2345555 8889999999888642 22221111122 2235677777877777765432 33344444455
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH-----HH
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG-----II 375 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-----ll 375 (662)
..+.|+.++|.+-|...++-. |.. ....||..+ +..+.|+.+.|++...++.+ +|++-... ++. .+
T Consensus 154 lykegqyEaAvqkFqaAlqvs---Gyq-pllAYniAL-aHy~~~qyasALk~iSEIie---RG~r~HPE-lgIGm~tegi 224 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVS---GYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIE---RGIRQHPE-LGIGMTTEGI 224 (459)
T ss_pred eeccccHHHHHHHHHHHHhhc---CCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHH---hhhhcCCc-cCccceeccC
Confidence 567888888888887777763 333 234565544 34466778888888777655 44331110 000 00
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCH
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG-LQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~ 454 (662)
++ ...|+. .. |..++ =+..+|.-...+.+.|+++.|.+.+..|.-+. -..|.+|...+.-.- ..+++
T Consensus 225 Dv-rsvgNt---~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 225 DV-RSVGNT---LV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ch-hcccch---HH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 00 000110 00 00000 01233444445677889999999888885332 234666665543322 23445
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (662)
.+..+-+.-+.+.+. -...||..++-.||++.-++.|..++.+-....-.-.+...|+.|=..-...-..++|.+-++.
T Consensus 293 ~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred cccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555555543 3346999999999999998888888766322100112333444332222234456666665554
Q ss_pred HH
Q 038801 535 MI 536 (662)
Q Consensus 535 m~ 536 (662)
+.
T Consensus 372 La 373 (459)
T KOG4340|consen 372 LA 373 (459)
T ss_pred HH
Confidence 44
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00019 Score=66.32 Aligned_cols=296 Identities=14% Similarity=0.112 Sum_probs=191.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH
Q 038801 296 SLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV---VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF 372 (662)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 372 (662)
-|...+...|++.+|+.-|...++. |+..|.++ ...|...|+...|+.-+.+..+ ++||-..-.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-----lKpDF~~AR 109 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-----LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-----cCccHHHHH
Confidence 3445555666666666666666554 44444433 3456666666666666666543 344421111
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHHHCCCCC--Chh------------hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 038801 373 G-IISACVNLGLSDKAHSILDEMNACGCSV--GLG------------VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437 (662)
Q Consensus 373 ~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 437 (662)
. -...+.+.|.++.|..-|+..++..-.- +.. .....+..+...|+...|++....+.+.. ..|
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 1 2234556677777777777776653100 011 12223445666788888888888888763 348
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh----hHH
Q 038801 438 VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH----DWN 513 (662)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~ 513 (662)
...|..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++....+..+ +.||.. .|.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYK 264 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHH
Confidence 8888888889999999988887777666554 44455667777788888888887777776654 334422 122
Q ss_pred HH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--H---HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCC
Q 038801 514 SI---------IHAFCKAGRLEDAKRTLRRMIFLQFEPND--Q---TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQ 579 (662)
Q Consensus 514 ~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 579 (662)
.+ +......++|.++++-.+...+. .|.. . .+..+-.++...+++.+|++...++.
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-------- 334 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-------- 334 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH--------
Confidence 11 12234567788888888877765 4442 2 34455566667899999999999988
Q ss_pred CCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 580 KGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 580 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
.+.|| ..++.--..+|.-...+++|+.-+++..+.+...+
T Consensus 335 -~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 335 -DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred -hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 66676 67888888888888999999999999887765533
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=59.97 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=16.9
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 433 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-08 Score=59.24 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 539 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.9e-05 Score=84.80 Aligned_cols=314 Identities=10% Similarity=-0.043 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCC----C---cccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFM----P---FELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
.....+...|++++|..++......-... + .......+...+...|++++|...+++..+.. ...+
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------~~~~ 486 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-------PLTW 486 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CCcc
Confidence 34445567788888888887765421110 0 11122233344556788888888888875521 1111
Q ss_pred ----HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC---CCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHhc----C
Q 038801 220 ----IYACNAALEGCCYGLQSVSDAEKVIETMSVLGV---RPN--ESSFGFLAYLYALKGLQEKIVELESLMNEF----G 286 (662)
Q Consensus 220 ----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~----g 286 (662)
....+.+-..+... |++++|...+++.....- .+. ..++..+...+...|++++|...+++.... +
T Consensus 487 ~~~~~~a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 12334444445555 888888888887754211 111 123444555677788888888887776542 2
Q ss_pred CC--C-cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 038801 287 FS--S-QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363 (662)
Q Consensus 287 ~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 363 (662)
.. + ....+..+...+...|++++|...+.+.+......+.......+..+...+...|+.++|.+.+++...+....
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 11 1 22334455566677788888888776665532211111123344455666777888888888887765432221
Q ss_pred ccc-ccch-H-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----C
Q 038801 364 IVV-DRSV-G-FGIISACVNLGLSDKAHSILDEMNACGCSVG---LGVYVPTLKAYCKEHRTAEATQLVMDISSS----G 433 (662)
Q Consensus 364 ~~~-~~~~-~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 433 (662)
... .... . ...+..+...|+.+.|.+.+........... ...+..+..++...|+.++|...+++.... |
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 100 0000 0 0112333446677777777655443211111 011234555666667777777776665442 2
Q ss_pred CCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 434 LQLD-VGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 434 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
...+ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1111 2344445556666677777777766666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00021 Score=70.33 Aligned_cols=106 Identities=10% Similarity=-0.019 Sum_probs=81.1
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
..+.+..|+++.|+..|-......+. +...|+.-..++++.|+ ..+++....+-.+..|.= ...|.....++..
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~---~~~al~da~k~~~l~p~w--~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGS---YEKALKDATKTRRLNPDW--AKGYSRKGAALFG 82 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhh---HHHHHHHHHHHHhcCCch--hhHHHHhHHHHHh
Confidence 34567789999999999999876655 88889999999999998 445555544333333332 3579999999999
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDIC 188 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (662)
.|++++|+.-|.+=++. .|++....+-|..++
T Consensus 83 lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999999999988774 467777666666665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=72.72 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQ 559 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 559 (662)
..+.+.++.+.|.+-+..|.-+.....|+.|...+.-.-. .+++.+..+-+.-+... .|- ..||..++-.||+..-
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHH
Confidence 3456677777777777776555445556666555443222 34444455555545543 342 3578888888888877
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCc-ccHHHHHHHHHHHH-ccCchHHHHHHHHHH
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIK-FEHNLVDAFLYALV-KGGFFDAVMQVVEKS 612 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 612 (662)
++-|-.++-+-. ..... .+...|+ |+.++. -.-..++|.+-++.+
T Consensus 326 f~lAADvLAEn~-------~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 326 FDLAADVLAENA-------HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HhHHHHHHhhCc-------chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 777777765444 22322 2334444 344444 344566666666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00033 Score=73.85 Aligned_cols=461 Identities=13% Similarity=0.027 Sum_probs=230.7
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHH
Q 038801 84 TDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFA 163 (662)
Q Consensus 84 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 163 (662)
...|+..|-+..+.... -...|..|-..|....+ ..++...+...++.++. +..........|++..+++.|..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHH
Confidence 44444444444332211 13345555555554443 33333333333444333 34455667888888888888888
Q ss_pred HHHHHHhcCC-CCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHH
Q 038801 164 LVKCMFKNRY-FMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEK 242 (662)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 242 (662)
+.-..-+... ......+.. ..-.|.+.++...|+.-|+...+. -+.|...|..+..+|.+. |++..|++
T Consensus 548 I~l~~~qka~a~~~k~nW~~-rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~s-Gry~~AlK 617 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQ-RGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPES-GRYSHALK 617 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhh-ccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhc-CceehHHH
Confidence 7333222110 000111111 333445678888888888888763 355777999999999998 99999999
Q ss_pred HHHHHHhcCCCCCcccHHHHH--HHHHHcCCHHHHHHHHHHHHhcC------CCCcHHhHHHHHHHHHhcCChhhHHHHH
Q 038801 243 VIETMSVLGVRPNESSFGFLA--YLYALKGLQEKIVELESLMNEFG------FSSQMVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 243 ~~~~m~~~g~~p~~~t~~~li--~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
+|.+.... .|+. +|.... -.-+..|.+.++...+......- ...-..++-.+...+...|-...|...+
T Consensus 618 vF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 618 VFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred hhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99888753 4443 333322 34556788999988887765431 1111222222222222223233333332
Q ss_pred HHHH-------cCCCCCCCCCCHHHHHHHHHHHH---hcC-C-HH-HHHHHHHH-HHHhC-----------------CCC
Q 038801 315 LLCL-------GGGNMEQSDFSKETYCEVVKGFL---QNG-N-VK-GLANLIIE-AQKLE-----------------PSG 363 (662)
Q Consensus 315 ~~~~-------~~~~~~~~~p~~~~~~~li~~~~---~~~-~-~~-~a~~~~~~-m~~~~-----------------~~~ 363 (662)
++.+ .+... -+...|-.+-.+|. ... + +. -...+|.. ...+. .-.
T Consensus 695 eksie~f~~~l~h~~~----~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls 770 (1238)
T KOG1127|consen 695 EKSIESFIVSLIHSLQ----SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS 770 (1238)
T ss_pred HHHHHHHHHHHHHhhh----hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH
Confidence 2222 22100 02222222222111 111 0 00 00000000 10000 000
Q ss_pred cccccchHHHHHHHHHh----cC----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 364 IVVDRSVGFGIISACVN----LG----LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 364 ~~~~~~~~~~ll~~~~~----~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
...+..+|..+...|.+ .| +...|..-+.+.++.. ..+..+||.|.-. ...|++.-|..-|-+-.... +
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p 847 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P 847 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence 11123334444333333 11 2234555555554432 3345556655433 55566666666555544432 2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH---HhhCCCCccchhhH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDE---VVEDPRVEVKTHDW 512 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p~~~~~ 512 (662)
....+|..+.-.+.+..+++.|...|...+... |.+...|..........|+.-++..+|.. +....|-.++..-|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 256677777777788888888888888777664 44444555444445556766666666654 22222344444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIF---------LQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
-+........|+.++-...-+.+-. .+ .|+ ...|.+.....-+.+.+.+|.+...+...
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555443333222221 12 344 35777776666667777777777776653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0015 Score=68.56 Aligned_cols=421 Identities=13% Similarity=0.088 Sum_probs=245.0
Q ss_pred cCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH--hccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038801 190 KNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC--CYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYA 267 (662)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 267 (662)
..+++..|..-.+++.+ ..||.. |..++.++ .+. |+.++|..+++.....+.. |..|...+-..|.
T Consensus 21 d~~qfkkal~~~~kllk---------k~Pn~~-~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLK---------KHPNAL-YAKVLKALSLFRL-GKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHH---------HCCCcH-HHHHHHHHHHHHh-cCchhHHHHHhhhccCCCC-chHHHHHHHHHHH
Confidence 46788899988888876 466654 33444443 454 9999999999998877644 8889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC-CH
Q 038801 268 LKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG-NV 346 (662)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~ 346 (662)
..|..++|..+|+...... |+......+..+|.+.+++.+-.++=-++.+.-+. +...+=++++.+.+.. ..
T Consensus 89 d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~ 161 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSE 161 (932)
T ss_pred HHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCC
Confidence 9999999999999998764 77888888889999998887644443333333211 4444445555544322 11
Q ss_pred ---------HHHHHHHHHHHHhCCCCcccccc-hHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHH
Q 038801 347 ---------KGLANLIIEAQKLEPSGIVVDRS-VGFGIISACVNLGLSDKAHSILD-EMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 347 ---------~~a~~~~~~m~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
.-|.+.++.+.+ ..| +.... -...-+..+...|++++|.+++. ...+.-...+...-+.-+..+..
T Consensus 162 ~~~~~~i~l~LA~~m~~~~l~--~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 162 NELLDPILLALAEKMVQKLLE--KKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cccccchhHHHHHHHHHHHhc--cCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 224445555543 122 22211 11122344556788999999983 44444334455555677888899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----------------CCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT----------------SQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
.+++.+..++-.++..+|. |. |...++.+++ .+..+...+..++..... ....|..-
T Consensus 239 l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~ 311 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLAR 311 (932)
T ss_pred hcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHH
Confidence 9999999999999988853 32 4443332221 122222222222222221 12233333
Q ss_pred HHHHH---hcCCHHHHHHH-HHHHhhCC--------------------------CCccchh-------hHHHHHHHHHhc
Q 038801 480 MTGLM---ENHRPELMAAF-LDEVVEDP--------------------------RVEVKTH-------DWNSIIHAFCKA 522 (662)
Q Consensus 480 l~~~~---~~~~~~~a~~~-~~~~~~~~--------------------------~~~p~~~-------~~~~li~~~~~~ 522 (662)
+.... .-|+.+++.-. |++.-... +..++.. -+.+.+..-.-.
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~ 391 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLL 391 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHh
Confidence 33332 33555544322 22221110 0011110 012222222222
Q ss_pred C-----CHHHHHHHHHHHHh---CC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHHhhcc
Q 038801 523 G-----RLEDAKRTLRRMIF---LQ------FEPNDQ---------TYLSLINGYVTAEQYF---SVLMMWHEIKRKIST 576 (662)
Q Consensus 523 g-----~~~~A~~~~~~m~~---~~------~~p~~~---------~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~ 576 (662)
| +.+.-..++++... +| +-|+.. +-+.|++.|-+.++.. +|+-+++...
T Consensus 392 G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl----- 466 (932)
T KOG2053|consen 392 GLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL----- 466 (932)
T ss_pred hccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----
Confidence 3 12233333332221 22 223322 4567888888887765 4666666555
Q ss_pred cCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHhhhhhhhHHHHHHHHhh
Q 038801 577 DGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK-QAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 577 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
...| |..+--.+++.|.-.|-+..|.+.++.+.-.++..|+..++ ...+...|....+.......+.+
T Consensus 467 ----t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 467 ----TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred ----hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 2334 34556778889998999999999999998888888877777 44555567766666555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-05 Score=85.23 Aligned_cols=232 Identities=11% Similarity=0.092 Sum_probs=179.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-----DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 474 (662)
+-+...|-..|......++.++|.+++++.... +.+ -...|.+++..-..-|.-+...++|++..+.. ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 445677888888888899999999999988753 211 13467777777777788888899999998864 2235
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H-HHHHHHH
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--D-QTYLSLI 551 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~-~~~~~li 551 (662)
.|..|...|.+.++.++|.++++.|.++.+- ....|...+..+.+..+-+.|..++.+..+. -|. . ....-.+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 7888999999999999999999999998773 4467999999999999999999999998874 454 2 2233334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH----H
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK----Q 626 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ 626 (662)
..-.+.|+.+.+..+|+..... .| -...|+.+++.-.+.|+.+.+..+|++....++.|.....+ |
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~a---------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSA---------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhh---------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 4445679999999999999832 23 23689999999999999999999999999999998744443 5
Q ss_pred HHHHHhhhhhhhHHHHHHHHh
Q 038801 627 AFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 627 ~~~~~~~~~~~a~~~~~~~~~ 647 (662)
.+=..+||-+..+..-.++.+
T Consensus 1679 eyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHhcCchhhHHHHHHHHHH
Confidence 566667887777776665554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-05 Score=78.65 Aligned_cols=224 Identities=9% Similarity=-0.020 Sum_probs=156.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 038801 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG 344 (662)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 344 (662)
-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+.+.++-.+. |....-.|.-.|...|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-----NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-----NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHhhhh
Confidence 3557888999999999888875 456888888888888888888888888888887543 6778888888999999
Q ss_pred CHHHHHHHHHHHHHhCCCCc--c---cccchHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHHcCC
Q 038801 345 NVKGLANLIIEAQKLEPSGI--V---VDRSVGFGIISACVNLGLSDKAHSILDEMNA-CGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~--~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~ 418 (662)
.-.+|++.++...+..+.-. . ++...-.. ..+.....+....++|-++.. .+..+|..++..|.-.|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999999988765332110 0 00000000 111122223444455555443 4445778888888888888889
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038801 419 TAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 497 (662)
+++|.+.|+..... +| |...||.|...++...+.++|+..|++.++.. |.-+.+...|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999888876 45 67888999888888888899999888888763 3333444455566677777777666655
Q ss_pred HH
Q 038801 498 EV 499 (662)
Q Consensus 498 ~~ 499 (662)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 43
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-06 Score=84.12 Aligned_cols=208 Identities=13% Similarity=0.201 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|-...|..+|+++ ..+.-+|.+|+..|+..+|..+..+..++ +||...|..+.+......-+
T Consensus 405 aell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 33444444444444444433 23444444455555555554444444442 44444444444444444444
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (662)
++|.++++..-.+- -..+.......++++++.+.|+.-.+-++..+ .+|-.+..+..+.+++..|.+.|..
T Consensus 474 EkawElsn~~sarA-------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~--~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISARA-------QRSLALLILSNKDFSEADKHLERSLEINPLQL--GTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHHH-------HHhhccccccchhHHHHHHHHHHHhhcCccch--hHHHhccHHHHHHhhhHHHHHHHHH
Confidence 45544444332220 00011111223444444444444443333322 2344444444445555555555554
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 535 MIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 535 m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
... ..||. ..||.+-.+|.+.++-.+|...+++.. +.. .-+..+|.-.+-...+-|.+++|++.+.++
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-------Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-------KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-------hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 443 24443 345555555555555555555555544 233 112223333333344455555555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-05 Score=81.47 Aligned_cols=227 Identities=10% Similarity=0.039 Sum_probs=175.8
Q ss_pred ccc-chHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 366 VDR-SVGFGIISACVNLGLSDKAHSILDEMNAC-GCSV---GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 366 ~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
||. ..|-..|.-....++.++|.+++++.+.. ++.- -..+|.++++.-..-|.-+...++|++..+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 444 34555777888889999999999988764 2111 12477777777777888888899999988752 23456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
|..|...|.+.+.+++|.++|+.|.++- .-....|...+..+.+.++.+.|..++.+..+..+-+-........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8888999999999999999999999763 255678999999999999999999999998875333334555666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH--HHHHHHHHHHH
Q 038801 521 KAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH--NLVDAFLYALV 597 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 597 (662)
+.|+.+.+..+|+..... .| -...|+.+|+.-.++|+.+.+..+|+++. ..++.|-. ..|.-.+..--
T Consensus 1612 k~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi-------~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI-------ELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred hcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHH-------hcCCChhHhHHHHHHHHHHHH
Confidence 899999999999998875 34 44689999999999999999999999999 77887755 67777776666
Q ss_pred ccCchHH
Q 038801 598 KGGFFDA 604 (662)
Q Consensus 598 ~~g~~~~ 604 (662)
+.|+-+.
T Consensus 1683 ~~Gde~~ 1689 (1710)
T KOG1070|consen 1683 SHGDEKN 1689 (1710)
T ss_pred hcCchhh
Confidence 6677443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-05 Score=68.41 Aligned_cols=129 Identities=9% Similarity=0.077 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 522 AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
.|++++|+++++..++.+ +-|.++|.-=+...-..|+--+|++-+.+..+ .+.-|...|..+...|...|+
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--------~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--------KFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--------HhcCcHHHHHHHHHHHHhHhH
Confidence 345555555555555432 22233444333333334444445444444442 223344555555555555555
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHh---hhhhhhHHHHHHHHhhHHHHHHHhhhCC
Q 038801 602 FDAVMQVVEKSQEMKVF-VDKWKYKQAFMENH---KKLKVAKLRKRNFKKMEALIAFKNWAGL 660 (662)
Q Consensus 602 ~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~---~~~~~a~~~~~~~~~l~p~~~~~~~~~~ 660 (662)
++.|.-.++++.=..|. |-.+..+....... -+++.+++.+++.+++.| ..++.|.||
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~-~~~ral~GI 231 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP-KNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh-HhHHHHHHH
Confidence 55555555554322221 22222221111111 234445555555555555 344444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-05 Score=74.00 Aligned_cols=188 Identities=10% Similarity=0.003 Sum_probs=122.5
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc-
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV----GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG- 474 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~- 474 (662)
......+..+...+.+.|++++|...|+++... .|+. ..+..+..++...|++++|...++++.+.. |.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 345567777888889999999999999998876 3432 466778888999999999999999998764 22222
Q ss_pred --cHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 475 --SYLTIMTGLMEN--------HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 475 --~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
++..+..++.+. |+.+.|.+.++++.+..+-.+ ..+..+... +..... . .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~~----~~~~~~-------~-------~ 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE--YAPDAKKRM----DYLRNR-------L-------A 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh--hHHHHHHHH----HHHHHH-------H-------H
Confidence 344444555543 566777777777766422211 112111111 000000 0 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
.....+...+.+.|++.+|+..+++..+..+ +.......+..++.++.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYP-----DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678888999999999999984322 11223467788999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-05 Score=72.82 Aligned_cols=182 Identities=10% Similarity=0.008 Sum_probs=128.0
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh----
Q 038801 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVG---- 439 (662)
Q Consensus 367 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---- 439 (662)
....+..+...+...|++++|...++++.... +.+. ..+..+..+|.+.|++++|...++++.+. .|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34456677888999999999999999998864 2222 46777889999999999999999999886 34322
Q ss_pred hHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 440 NYDALIEASITS--------QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 440 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
++..+..++.+. |+.++|.+.|+++.+.. |.+......+... ..+... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~--------------~~~~~~----~-~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRM--------------DYLRNR----L-AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHH--------------HHHHHH----H-HHH
Confidence 355555566554 78999999999998774 2222222111111 110000 0 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EP-NDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.-.+...|.+.|++++|...+++..+..- .| ....+..+..++.+.|++++|..+++.+.
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22456678899999999999999987521 12 23688899999999999999999998887
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-05 Score=79.96 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..-..+...+...|-...|..+|++... +..++.+|+..|+..+|..+..+..++ +||...|..+.
T Consensus 399 q~q~~laell~slGitksAl~I~Erlem------------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEM------------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHH------------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 3445567788899999999999988643 556888999999999999998888873 78989999998
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
+......-+++|.++++..-.+ .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8888877889999988876432 11222223344789999999999877765 455568988889999999999
Q ss_pred HHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 491 LMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHE 569 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 569 (662)
.|.+.|..... ..|+ ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+++
T Consensus 537 ~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 537 AAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999998876 3444 6789999999999999999999999999876 33445777778888899999999999998
Q ss_pred HHH
Q 038801 570 IKR 572 (662)
Q Consensus 570 m~~ 572 (662)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 874
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00036 Score=67.52 Aligned_cols=209 Identities=6% Similarity=0.002 Sum_probs=122.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG-LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (662)
..+...++.++|+.++.++.++.+. +..+|+.--.++...| +++++...++++.+.. +.+..+|+....++.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 3344455666777777766553322 1122333333344445 4677777777777654 44555566555555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc---CC---
Q 038801 417 HRT--AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN---HR--- 488 (662)
Q Consensus 417 g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~--- 488 (662)
|+. +++..+++++.+...+ +..+|+...-++...|+++++++.++++++.+. -+...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 552 5667777777765322 667777777777777778888888888777663 3334555555444443 22
Q ss_pred -HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 489 -PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA----GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 489 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
.++...+..+.+...+ -|...|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~P--~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANP--RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCC--CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2355666655555322 2455677777777662 34456777777766542 2245677788888875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00012 Score=65.35 Aligned_cols=122 Identities=13% Similarity=0.172 Sum_probs=61.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLY 594 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~ 594 (662)
+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+.+|.-+|++|. ....|+.-+.+....
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s--------~k~~~T~~llnG~Av 215 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS--------EKTPPTPLLLNGQAV 215 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh--------cccCCChHHHccHHH
Confidence 34455566666666666641 233455555555544 244556666666665 124555555566666
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhh-hhhhhHHHHHHHHhhHHH
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHK-KLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~-~~~~a~~~~~~~~~l~p~ 651 (662)
++...|++++|..+++........ |+....+.......| +.+...+...+++..+|.
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 666666666666666666554443 443333333222223 334444444555544443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00015 Score=78.14 Aligned_cols=235 Identities=9% Similarity=0.040 Sum_probs=149.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHH
Q 038801 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335 (662)
Q Consensus 257 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 335 (662)
..+..|+..+...+++++|.++.+...+.. |+ ...|-.+...+...++.+++..+ .
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv---------------------~ 88 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL---------------------N 88 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh---------------------h
Confidence 345667777778888888888887666543 44 22233333355566665555433 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
++.......++.-+..+...|.. ..-+...+..+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 23333333444333333334332 11233456678888888888888888888888887 6678888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAF 495 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 495 (662)
. ++++|++++.+.... |...+++.++.++|.++.... +.+. +.-.++
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~----------------d~f~~i 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDF----------------DFFLRI 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccc----------------hHHHHH
Confidence 8 888888888877653 566678888888888888764 2222 223333
Q ss_pred HHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 038801 496 LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYV 555 (662)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 555 (662)
.+++....+..--+.++-.+-..|-..++++++..+++.+.+. .| |.....-++.+|.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 3444333233333445666677788888899999999999975 34 4456777777766
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00056 Score=66.18 Aligned_cols=205 Identities=6% Similarity=-0.029 Sum_probs=109.5
Q ss_pred hcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG-NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
..++.++|+.++.+.+...+. +..+|+.--.++...| +++++++.++++.+..++ +..+|+.....+.+.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk----nyqaW~~R~~~l~~l 119 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK----NYQIWHHRRWLAEKL 119 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc----chHHhHHHHHHHHHc
Confidence 344555555555555544221 3334444444444444 456666666665542222 222233322223333
Q ss_pred CC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC---CC---
Q 038801 382 GL--SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS---QD--- 453 (662)
Q Consensus 382 ~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~--- 453 (662)
|. .+++..+++.+++.. +-|..+|+....++.+.|+++++++.++++.+.+.. |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 43 245566666666654 456666777667777777777777777777766433 555565555544443 22
Q ss_pred -HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh
Q 038801 454 -FQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN----HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK 521 (662)
Q Consensus 454 -~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 521 (662)
.++++....+++... |.+...|+.+...+... ++..+|...+.+.... + ..+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-D-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHh
Confidence 235566666666654 56666777777666662 3345566666665542 1 1234456666666664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0041 Score=61.58 Aligned_cols=184 Identities=10% Similarity=0.092 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 454 FQSAFSLFRDMREARIYDLKGSYLTIMTG---LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 454 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
-+++..+++..++.-..-+..+|..+.+- -.+....+....+++++.......|+. +|..+|+.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH
Confidence 45566666665543322233334333321 112223566777788877776777775 68999999889999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHH
Q 038801 531 TLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 531 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+|.+..+.+..+ ++..+++++.-+|. ++..-|.++|+--.. ..| -+..-....+.-+..-++-..|..+|
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLk------kf~--d~p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLK------KFG--DSPEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHH------hcC--CChHHHHHHHHHHHHhCcchhHHHHH
Confidence 999999998888 67788999998886 889999999987663 222 23344467778888999999999999
Q ss_pred HHHHhCCCCCC----HHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 610 EKSQEMKVFVD----KWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 610 ~~m~~~~~~p~----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
++....+..|+ +|...+.+=..-||+....++.++-..
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99988866655 788888887788999988888776655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00036 Score=74.63 Aligned_cols=146 Identities=8% Similarity=-0.098 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
.+...+..|..+..+.|++++|..+++...+. .|+.......+...+.+.+++++|+...++... ..|+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---------~~p~ 152 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---------GGSS 152 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---------cCCC
Confidence 45788999999999999999999999999984 588888888899999999999999999999977 5677
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
......+...+....|++++|..+|++....+ +-+..++..+-.++-..|+.++|...|+...+.- .+....|+.++
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 66655555555444599999999999998743 2346778888889999999999999999988763 34455555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00048 Score=74.44 Aligned_cols=240 Identities=12% Similarity=0.056 Sum_probs=155.8
Q ss_pred CCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCc
Q 038801 139 LLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKP 218 (662)
Q Consensus 139 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 218 (662)
+.....+..|+..+...+++++|.++.+...+. .|....++-.+..++...++.+++.-+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 355677788888888888888888888866653 345554444444466666655444433
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
.++..+... .++..+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+.
T Consensus 88 ------~~l~~~~~~-~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~A 157 (906)
T PRK14720 88 ------NLIDSFSQN-LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLA 157 (906)
T ss_pred ------hhhhhcccc-cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 233333333 45544555555555432 344467777788888888888888888888876 56688888888
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~ 378 (662)
..|... +.++|.+.+.+.+. .+...+++.++.+++.++... .|+
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~-------------------~~i~~kq~~~~~e~W~k~~~~-----~~~----------- 201 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIY-------------------RFIKKKQYVGIEEIWSKLVHY-----NSD----------- 201 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHH-------------------HHHhhhcchHHHHHHHHHHhc-----Ccc-----------
Confidence 888888 88888877644433 266667888888888877541 122
Q ss_pred HhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNAC-GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
+++.-.++.+.+... |..--..++-.+-..|-+.++++++..+++.+.+.... |.....-++.+|.
T Consensus 202 ----d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 202 ----DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222333333344332 33334456666777888888999999999999887422 5566667777666
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-05 Score=63.58 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.++++..+ ..|+ .+..+...+...|++++|...|+..... .| +...|..+..++...|++++|+..|+++.
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al- 85 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL- 85 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-
Confidence 44555444 2344 2455677788899999999999998875 45 55788888888999999999999999998
Q ss_pred hhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 573 KISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 573 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...| +...+..+..++.+.|++++|++.++...+..+.
T Consensus 86 --------~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 86 --------MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred --------hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445 4578888888899999999999999998776654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0042 Score=57.78 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=128.8
Q ss_pred HHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChh
Q 038801 229 GCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 308 (662)
.+.-. |+...|++....+.+.. +-|...|..-..+|...|++..|+.=++...+.. .-+..+.-.+-..+-..|+.+
T Consensus 164 s~~~~-GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 164 SASGS-GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHhcC-CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 34444 88999999888888754 4566666666788888898888877776666553 234555555667777888888
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHH
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 388 (662)
.++..+.+.++-. ||... +|..-....+..+.++.|. .....+++.++.
T Consensus 241 ~sL~~iRECLKld------pdHK~------Cf~~YKklkKv~K~les~e-------------------~~ie~~~~t~cl 289 (504)
T KOG0624|consen 241 NSLKEIRECLKLD------PDHKL------CFPFYKKLKKVVKSLESAE-------------------QAIEEKHWTECL 289 (504)
T ss_pred HHHHHHHHHHccC------cchhh------HHHHHHHHHHHHHHHHHHH-------------------HHHhhhhHHHHH
Confidence 8888878877753 23221 1111112223333333332 233446666666
Q ss_pred HHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 389 SILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 389 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+-.+..++..-.... ..+..+-.++...|++.+|++...+..+. .|| +.++.--..+|.-...++.|+.-|+..
T Consensus 290 e~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666665422112 23344455666677788888877777765 443 677777777888888888888888887
Q ss_pred HHcC
Q 038801 465 REAR 468 (662)
Q Consensus 465 ~~~~ 468 (662)
.+.+
T Consensus 368 ~e~n 371 (504)
T KOG0624|consen 368 LELN 371 (504)
T ss_pred HhcC
Confidence 7765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00029 Score=63.14 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=85.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA 522 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 522 (662)
.+-..+...|+-+....+..+..... +.+.......+....+.|++..|...+.+... .-.+|...|+.+.-+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 33444445555555555544433221 22323333455555555666666666555554 2344556667777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 523 GRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
|+.++|..-|.+..+. .|+ ...++.|.-.+.-.|+.+.|..++.... ..+ .-|..+-.-+..+....|+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~-------l~~-~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAY-------LSP-AADSRVRQNLALVVGLQGD 217 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH-------hCC-CCchHHHHHHHHHHhhcCC
Confidence 7777777766666653 333 2455555555556677777777666666 222 1244444555566666677
Q ss_pred hHHHHHHHHH
Q 038801 602 FDAVMQVVEK 611 (662)
Q Consensus 602 ~~~A~~~~~~ 611 (662)
+++|..+...
T Consensus 218 ~~~A~~i~~~ 227 (257)
T COG5010 218 FREAEDIAVQ 227 (257)
T ss_pred hHHHHhhccc
Confidence 7766666544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00054 Score=73.31 Aligned_cols=181 Identities=8% Similarity=-0.033 Sum_probs=119.4
Q ss_pred ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 038801 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDA 443 (662)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 443 (662)
..+...+..|.....+.|.+++|..+++...+.. +.+......+..++.+.+++++|+..+++.... .| +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 3345566667777778888888888888887763 445566677777788888888888888888776 44 4455666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 523 (662)
+..++.+.|++++|..+|++....+ +.+..++..+...+-..|+.++|...|.+..+. ..+....|+.++ +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~------~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHH------H
Confidence 6777778888888888888888733 555677777778888888888888888887764 223334444433 3
Q ss_pred CHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhc
Q 038801 524 RLEDAKRTLRRMIFLQF----EPNDQTYLSLINGYVTA 557 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~ 557 (662)
++..-...++++.-.+. ...+......|.-|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 44445555665554322 22234555555555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00033 Score=62.93 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=71.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCC--HH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGY-VTAEQ--YF 561 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~-~~~~~--~~ 561 (662)
.++.+++...+....+. -..+...|..+...|...|++++|...|++..+. .| +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 33445555555554442 1224556777777777777777777777777764 34 335555555543 45455 46
Q ss_pred HHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 562 SVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+|.+++++.. ...| +...+..+...+.+.|++++|+..++++.+..+.
T Consensus 128 ~A~~~l~~al---------~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 128 QTREMIDKAL---------ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHH---------HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7777777777 2333 3355666666677777777777777777655443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00031 Score=63.05 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=69.3
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH-HhcC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC-VNLG 382 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~-~~~~ 382 (662)
.++.+++...+...++..+. |...|..+...|...|++++|...|++..++.+. +...+..+..++ ...|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAG 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcC
Confidence 34445555555555555332 6666777777777777777777777666543222 333344444432 4445
Q ss_pred C--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 383 L--SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 383 ~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+.
T Consensus 123 ~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 123 QHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4 366666666666654 345566666666666666666666666666655
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=66.22 Aligned_cols=112 Identities=7% Similarity=-0.024 Sum_probs=91.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHH
Q 038801 529 KRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 529 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
..+|++.++. .|+. +..+..++...|++++|...|+... .+.| +...+..+..++.+.|++++|..
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---------~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---------MAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---------HcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566666653 5554 5567788889999999999999999 4555 45888999999999999999999
Q ss_pred HHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 608 VVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 608 ~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
.+++..+.++. ++.+..+...+...|+.++|...+++++++.|.++
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999988775 55666655566778999999999999999998763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0016 Score=58.45 Aligned_cols=250 Identities=12% Similarity=0.054 Sum_probs=148.1
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
++.+.-.|++..++..-+...... -+...-..+-++|...|....... .+ +.+..+.......+...+..
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI-----~~~~~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EI-----KEGKATPLQAVRLLAEYLEL 84 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cc-----ccccCChHHHHHHHHHHhhC
Confidence 444555677776666555443321 234444555566666665322111 11 22223444444444444444
Q ss_pred cCCchhHHH-HHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhcc
Q 038801 155 ANTAAPAFA-LVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYG 233 (662)
Q Consensus 155 ~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 233 (662)
.++-+.-+. +.+++.... ...+..+..+-...|.+.|++++|++.+..... -+....| +..+.+.
T Consensus 85 e~~~~~~~~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~--VqI~lk~ 150 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-----------LEAAALN--VQILLKM 150 (299)
T ss_pred cchhHHHHHHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhccch-----------HHHHHHH--HHHHHHH
Confidence 555444443 444444332 233434455556677788999999988876422 1222222 2334454
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhh
Q 038801 234 LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309 (662)
Q Consensus 234 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (662)
.+.+-|.+.++.|.+-. +..|.+-|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++++
T Consensus 151 -~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 151 -HRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred -HHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 78889999999998632 55666666655553 45678888899998764 46888888888888889999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 038801 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVK-GLANLIIEAQK 358 (662)
Q Consensus 310 A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~ 358 (662)
|..++++.+.+... ++.+...+|.+-...|... -..+.+.+++.
T Consensus 226 Ae~lL~eaL~kd~~-----dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 226 AESLLEEALDKDAK-----DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhccCC-----CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99998888887533 5666655555555555443 34445555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-06 Score=50.80 Aligned_cols=34 Identities=35% Similarity=0.702 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0004 Score=62.26 Aligned_cols=160 Identities=9% Similarity=-0.003 Sum_probs=127.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
..+-..+...|+-+....+........+ -|....+..+....+.|++.+|...|++..... .+|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 5556677778888888888777655422 244556778999999999999999999999753 5567899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHhhh
Q 038801 557 AEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM-ENHKK 634 (662)
Q Consensus 557 ~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~ 634 (662)
.|+.++|..-|.+.. .+.|+ ...++-|...+.-.|+++.|..++......+........++... ...|+
T Consensus 147 ~Gr~~~Ar~ay~qAl---------~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 147 LGRFDEARRAYRQAL---------ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred ccChhHHHHHHHHHH---------HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 999999999999998 34454 46778888899999999999999999988777666666665555 55799
Q ss_pred hhhhHHHHHHHHhh
Q 038801 635 LKVAKLRKRNFKKM 648 (662)
Q Consensus 635 ~~~a~~~~~~~~~l 648 (662)
++.|+.+..+-+..
T Consensus 218 ~~~A~~i~~~e~~~ 231 (257)
T COG5010 218 FREAEDIAVQELLS 231 (257)
T ss_pred hHHHHhhccccccc
Confidence 99999888665553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0002 Score=60.93 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFS 562 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~ 562 (662)
.++...+...++.+..+++-.+ .....-.+...+...|++++|...|+........|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555666666666665433321 1223333456677778888888888887775422222 234455667777788888
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
|+..++... ... .....+.....++.+.|++++|...|++.
T Consensus 104 Al~~L~~~~-------~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIP-------DEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhcc-------Ccc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888876544 222 23445666777788888888888877653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=9e-06 Score=49.61 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 437 (662)
||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP 542 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 542 (662)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0088 Score=58.76 Aligned_cols=107 Identities=11% Similarity=-0.028 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~ 459 (662)
.|.++.|+..++.++.. .+.|..........+.+.|+..+|.+.++++... .|+ ....-.+.++|.+.|++.+|..
T Consensus 319 ~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 319 AGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred hcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34445555555554443 1334444444445555555555555555555544 333 3334444455555555555555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 460 LFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
+++...... +.+...|..|..+|...|+..+
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHH
Confidence 555554443 4444555555555555555433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.6e-06 Score=49.07 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCC
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRP 254 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 254 (662)
.+||.+|.+|++. |+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~-g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKA-GDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC
Confidence 3566666666665 66666666666666666655
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00024 Score=60.52 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
.|..++..+ ..++...+...++.+.+. .|+. ...-.+...+...|++++|...|+.+. .....|+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-------~~~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL-------ANAPDPEL 83 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hhCCCHHH
Confidence 466666666 489999999999999986 3433 244456677888999999999999999 44422322
Q ss_pred --HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHH
Q 038801 587 --NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFK 646 (662)
Q Consensus 587 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~ 646 (662)
.....|...+...|++++|...++......+.|..+......+...|+.+.|+..+++++
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 344557788899999999999998876666667777776778888999999999998753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=71.99 Aligned_cols=120 Identities=13% Similarity=0.180 Sum_probs=69.6
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREAR--IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN 513 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 513 (662)
.+......++..+....+.+.+..++.+.+... ...-..|..++++.|.+.|..+.+..+++.=.. +|+-||..++|
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHH
Confidence 355556666666666666666776666666542 222223445666666666666666666655444 36666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666665555544455555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00053 Score=57.69 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 589 (662)
.....+...+...|++++|.+.|+.....+ ..+...+..+...+...|++++|..++++.. ..+ ..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-------~~~-p~~~~~~ 88 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA-------ALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC-CCChHHH
Confidence 345566677778888888888888887743 2255677778888888888888888888877 222 2244666
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..+...+...|++++|...+++..+..+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 77777888888888888888888766554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00035 Score=58.79 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
...+...+...|++++|...++.+....+ .+...|..+..++...|++++|..++++..+.+ ..+...+..+...+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 33344444555555555555555544211 134456666666666677777777776666542 223455666666666
Q ss_pred hcCCHHHHHHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~ 571 (662)
..|++++|+..|++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 97 ALGEPESALKALDLAI 112 (135)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6777777777776666
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00033 Score=69.08 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh
Q 038801 442 DALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK 521 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 521 (662)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+..+ -+......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHh
Confidence 344555666788888888888888775 33 455577777777778888888888776422 234455555666778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 522 AGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.++++.|+++.+++... .|+. .+|..|..+|...|+++.|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888864 6766 488888888888888888887777555
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0068 Score=59.54 Aligned_cols=200 Identities=13% Similarity=0.115 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 038801 384 SDKAHSILDEMNACG--CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
+..+...-+++...+ -.|+...+...+.+......-..+..++.+-.+. .-...-|. ....+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHH
Confidence 333444444443322 2456667777776665554444444444443331 11222233 333455668888888888
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
+.++..- |.+........+.+...++..+|.+.++++....+.. ....-.+..+|.+.|+..+|..++++..... +
T Consensus 330 ~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 330 QPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 8877662 5555555555567777888888888888877642222 3445566777778888888888887777652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 542 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
-|...|..|..+|...|+..++..-.-+ .+...|+++.|+..+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE-------------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH-------------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 3557788888888887777766543332 344668888888877777554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=70.88 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=70.6
Q ss_pred CcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC--GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 363 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
+...+...+..+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33444445555555555555566666655555443 1112223445666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666555555555555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0095 Score=53.28 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-cccccchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSG-IVVDRSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..+.++.++++.++..-.+.| ..++..+.. .++-+....|+.+.|...++++.+.- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 345566666666655433344 444443332 34555566677777777777776652 333333222222344567777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+|.++|+.+.+.. +.|.++|-.-+...-..|+--+|++-+.+-.+. ...|...|.-+...|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777664 225566665565666666666777666666655 35666777777777777777777777777776
Q ss_pred hCCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKA---GRLEDAKRTLRRMIFL 538 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 538 (662)
-..+.. ...+..+...+.-. .+.+.|.+.|.+..+.
T Consensus 182 l~~P~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPFN--PLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 543332 23344444444333 3566778888888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00069 Score=66.89 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++..+.. +.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344555556667777777777777766 244 33446666667777777777777777553 344444454556677
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
+.++.+.|.++.++..+. .|+ ..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 778888888888877763 333 45788888888888888888888887663
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.9e-05 Score=45.15 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.2e-05 Score=44.98 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=15.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=53.60 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPNDQTYLSLINGYVTA--------EQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
...|..+...|++...-.+|+.++..|+ -|+..+|+.++.+.++. ++.-..+.++++|. ..+++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-------~~~lK 101 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-------SNKLK 101 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-------HhccC
Confidence 4455666667999999999999999999 89999999999998874 24556889999999 88999
Q ss_pred ccHHHHHHHHHHHHcc
Q 038801 584 FEHNLVDAFLYALVKG 599 (662)
Q Consensus 584 p~~~~~~~l~~~~~~~ 599 (662)
|+..||+.++..+.+.
T Consensus 102 P~~etYnivl~~Llkg 117 (120)
T PF08579_consen 102 PNDETYNIVLGSLLKG 117 (120)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999988753
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0004 Score=53.47 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGC-SVGLGVYVPTLKAYCKEH--------RTAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 45555555777777777777777777 677777777776666542 233445566666666666666666666
Q ss_pred HHHHHc
Q 038801 445 IEASIT 450 (662)
Q Consensus 445 i~~~~~ 450 (662)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.11 Score=55.09 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=146.2
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHH--hccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHL--SSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (662)
|......+++..|+.....+.++. |+ ..|..++.++ .+.|+.+++...++.. ......|..|...+-..|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~-----~~~~~~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEAL-----YGLKGTDDLTLQFLQNVY 87 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhh-----ccCCCCchHHHHHHHHHH
Confidence 345566889999999999988653 22 2355566655 4557766666555543 222223888999999999
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc
Q 038801 153 RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY 232 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (662)
.+.+..++|..++++..... |. ......+..+|.|.+++.+-.++=-++.+ .+..+...|=++++....
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK--------~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYK--------NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCcccchHHHHHHHHHH
Confidence 99999999999999998743 45 44455566677788877765544444433 144455555566666554
Q ss_pred cCCChh---------HHHHHHHHHHhcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCcHHhHHHHHHHH
Q 038801 233 GLQSVS---------DAEKVIETMSVLGVRP-NESSFGFLAYLYALKGLQEKIVELES-LMNEFGFSSQMVFYSSLISGY 301 (662)
Q Consensus 233 ~~~~~~---------~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~ 301 (662)
.....+ -|.+.++.+.+.+-+. +..-...-...+-..|++++|.+++. ...+.-...+...-+.-++.+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 422332 2555666665543111 11222223355667899999999983 333333334455556778888
Q ss_pred HhcCChhhHHHHHHHHHcCC
Q 038801 302 VKLGNLESASRTILLCLGGG 321 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~ 321 (662)
...+++.+..++-.+.+...
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcChHHHHHHHHHHHHhC
Confidence 89999999888877777764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0033 Score=60.36 Aligned_cols=206 Identities=12% Similarity=0.126 Sum_probs=112.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC---C--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQ---L--DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
..|-..|++++|.+.|.+..+...+ + -...|.....+|-+. ++++|...+++.. ..|..
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYRE 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHHh
Confidence 4566667777777666655322100 0 012233333333333 6666666655543 44667
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA-GRLEDAKRTLRRMIFL----QFEPN--DQTYLSLINGYVTAE 558 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~ 558 (662)
.|+...|-+.+.++ ...|-.. |++++|.+.|++..+. | .+. ..++..+...+.+.|
T Consensus 107 ~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 107 AGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp CT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 77776665555544 3445555 7888888888887752 2 221 146777888899999
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC--CC-HHhHH--HHHHHHh
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF--VD-KWKYK--QAFMENH 632 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~-~~~~~--~~~~~~~ 632 (662)
++++|+++|+++....... ...+.+. ..+-..+-++...|+...|.+.+++..+..+. .. -...+ +.-+...
T Consensus 170 ~y~~A~~~~e~~~~~~l~~--~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLEN--NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCH--CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999988433211 1123333 23333444667789999999999999766542 22 22222 3344455
Q ss_pred hhhhhhHHHHH---HHHhhHHH
Q 038801 633 KKLKVAKLRKR---NFKKMEAL 651 (662)
Q Consensus 633 ~~~~~a~~~~~---~~~~l~p~ 651 (662)
+|.+....++. .+.+|+|+
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---HH
T ss_pred CCHHHHHHHHHHHcccCccHHH
Confidence 66666555554 44444444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.016 Score=55.74 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE-----PNDQ-TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
.++..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...||...|.+.+++.... ..++.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~-----~~~F~ 230 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ-----DPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT-----STTST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCC
Confidence 35667778889999999999999988864322 1222 3334444666679999999999988722 11332
Q ss_pred cc--HHHHHHHHHHHHc--cCchHHHHHHHHHH
Q 038801 584 FE--HNLVDAFLYALVK--GGFFDAVMQVVEKS 612 (662)
Q Consensus 584 p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~m 612 (662)
.+ ......|+.++-. ...+++|+.-|+.+
T Consensus 231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 22 3566777777743 33355566666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=53.18 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
++-.++..+.+.|++++|.+.|+.+.+. .|+ ...+..+..++.+.|++++|+..|+++....+ +.....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-----KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-----CCCccc
Confidence 4555666677778888888888777764 233 23555677777777888888888887772111 111123
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..+..+..++.+.|+.++|.+.++++.+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 45666667777788888888888877666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00027 Score=53.49 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHcc
Q 038801 522 AGRLEDAKRTLRRMIFLQFE-PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKG 599 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 599 (662)
.|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|+.++++ . ...++. .....+..++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---------~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---------KLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---------THHHCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---------CCCCCCHHHHHHHHHHHHHh
Confidence 46667777777776664211 1233444466666777777777777665 3 122222 3333445666677
Q ss_pred CchHHHHHHHHH
Q 038801 600 GFFDAVMQVVEK 611 (662)
Q Consensus 600 g~~~~A~~~~~~ 611 (662)
|++++|++++++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 777777776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0017 Score=62.13 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
|..++...-+.+..+.|..+|.+..+......++....+++.-+ ..++.+.|.++|+...+. +.-+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 33344444444444444444444443323333333333333221 123444455555555543 2223344445555555
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCccc---HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFE---HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
+.|+.+.|..+|++.. .. +.++ ..+|...+..-.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i-------~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAI-------SS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHC-------CT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHH-------Hh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555 11 1111 13555555555555555555555555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=54.29 Aligned_cols=107 Identities=10% Similarity=-0.020 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC----CC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF----VD 620 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~ 620 (662)
.++..+...+...|++++|.+.|+++....+ +.......+..+..++.+.|++++|...++.+....+. +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccH
Confidence 3566778888899999999999999983211 11112345667888999999999999999999876544 44
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHh
Q 038801 621 KWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKN 656 (662)
Q Consensus 621 ~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 656 (662)
.+..+.......|+.+.|...++++++..|.+..-.
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 555556666778999999999999999988765433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.002 Score=49.86 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.+.+++.. ... ..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~~-~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL-------ELD-PDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCC-CcchhHHH
Confidence 444555566667777777777666653 232 2455556666666677777777776666 211 11224555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHh
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.+...+...|++++|...++...+
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHc
Confidence 566666666777777766666544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=57.17 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 437 DVGNYDALIEASIT-----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 437 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
|-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+-+ |. ..|. ..
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~----------------fvp~-n~ 107 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GK----------------FVPR-NF 107 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CC----------------cccc-cH
Confidence 55556666655543 35566666666667777776666677766666654 22 1111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
+.++-.-|- .+-+-|++++++|...|+-||..++..|++.|++.+ .++.-+.+|.-+++
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s---~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS---HPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc---HHHHHHHHHHHHHH
Confidence 222222222 245679999999999999999999999999996644 45555555544443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00027 Score=53.50 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVL 564 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~ 564 (662)
.|+++.|+.+++++.+..+..++...+-.+..+|.+.|++++|..++++ .+ ..|+. ...-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666665422222334444567777777777777777776 22 22322 34445566777777777777
Q ss_pred HHHHH
Q 038801 565 MMWHE 569 (662)
Q Consensus 565 ~~~~~ 569 (662)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0038 Score=54.72 Aligned_cols=110 Identities=8% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--DQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
...+..+.+..+..-....|..+...+...|++++|...|++.......+. ..+|..+...+...|++++|++.+++.
T Consensus 19 ~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 19 ADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444432223333455678888888889999999999999986532221 247888889999999999999999998
Q ss_pred HHhhcccCCCCCccc-HHHHHHHHHHHH-------ccCchHHHHHHHHH
Q 038801 571 KRKISTDGQKGIKFE-HNLVDAFLYALV-------KGGFFDAVMQVVEK 611 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 611 (662)
.+ +.|+ ..++..+...+. +.|++++|...+++
T Consensus 99 l~---------~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 99 LE---------RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HH---------hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 83 2333 244555555555 66776655555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0027 Score=63.07 Aligned_cols=101 Identities=10% Similarity=-0.016 Sum_probs=59.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYA 595 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~ 595 (662)
.+...|++++|++.|+++++. .| +...|..+..+|...|++++|+..++++. .+.|+ ...|..+..+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---------~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAI---------ELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCcCCHHHHHHHHHH
Confidence 344566666777777666654 33 33456666666666677777777666666 23332 3555666666
Q ss_pred HHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM 629 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 629 (662)
|...|++++|+..++++.+.++.-.....++..|
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6667777777777766666555433334444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0061 Score=58.29 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSG-LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
+|..+++..-+.+..+.|..+|.+..+.+ +..++....++|. |...++.+.|..+|+...+. .+.+...+...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56666666666666777777777776432 1122222222222 22235556677777776655 355555666666777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
...++.+.|..+|++.....+... ....|...+.--.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 777777777777777766533333 3457888888888889999999998888874 55544444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=55.84 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC----------------CCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITS----------------QDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
|..+=....+..|.+-|+.-|..+|+.|++.+-+. .+.+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444444555555555555555444331 23455666666776666666666666666
Q ss_pred HHHHhcCC
Q 038801 481 TGLMENHR 488 (662)
Q Consensus 481 ~~~~~~~~ 488 (662)
+.+.+.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66665554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=49.17 Aligned_cols=90 Identities=7% Similarity=0.028 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVD 590 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~ 590 (662)
-.+..-+...|++++|..+|+-.... .|.. .-|-.|..+|-..|++++|+..|.... -+.| |...+-
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---------~L~~ddp~~~~ 107 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---------QIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------hcCCCCchHHH
Confidence 34455567889999999999988864 5544 566778788888899999999999888 3334 457888
Q ss_pred HHHHHHHccCchHHHHHHHHHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.+..++.+.|+.+.|.+.|+...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 88899999999999999998764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.01 Score=61.64 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHN 587 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 587 (662)
+...|.++.-.+...|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++.. .+.|...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---------~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF---------NLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------hcCCCCc
Confidence 3456777766667789999999999999985 5788899999999999999999999999888 4566655
Q ss_pred HHH
Q 038801 588 LVD 590 (662)
Q Consensus 588 ~~~ 590 (662)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.12 Score=48.22 Aligned_cols=178 Identities=12% Similarity=0.029 Sum_probs=102.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh----HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGN----YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
....+.+.|++++|.+.|+++... .|+... .-.+..++.+.+++++|...+++..+........-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 334455677777777777777765 333221 12345666777777777777777776643222234444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 485 E--NH---------------R---PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 485 ~--~~---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
. .+ + ...|...|+.++++ |=...-..+|...+..+... .-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~---la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDR---LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHH---HHH
Confidence 1 10 1 22344444444443 22223344454444443321 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.-+ .+.+-|.+.|.+..|+.-++.+.+.++ +..........++.+|.+.|..++|..+.....
T Consensus 177 ~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YEL-SVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 112 445667888999999999999986554 233344667778889999999999988876653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0042 Score=47.95 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (662)
+..+..++...|++++|.+.|+...+... .+...+..+...+...|++++|...+..
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333334444444444444444333211 1222333333344444444444444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.21 Score=48.46 Aligned_cols=126 Identities=9% Similarity=0.088 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
.+.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-..+-+. .-+ +.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHH
Confidence 355556667777888888888877664 57888888889999999998887765432 222 35788888999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-.+.. |......+...+..
T Consensus 248 ~~~~~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG 303 (319)
T ss_pred HHCCCHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence 9999888888887762 23667778888888888877654433 45555555544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=52.25 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
...|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+++.. ...|+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------~~~p~~ 105 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---------ELNPKQ 105 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCccc
Confidence 34566677777788888888888888876432222 2567777788888888888888888887 23343
Q ss_pred HHHHHHHHHHHHccCchHHHH
Q 038801 586 HNLVDAFLYALVKGGFFDAVM 606 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~ 606 (662)
...+..+..++...|+...+.
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHh
Confidence 345556666677766644433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0052 Score=56.52 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=66.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~ 560 (662)
-+.+.+++++|+..|.+.++- ..-|.+.|.--..+|++.|.++.|.+-.+..+. +.|.. .+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 466677777777777777763 122455666677777777777777777777665 35544 4777777777777777
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
++|++.|++.. .+.|+..+|..=
T Consensus 166 ~~A~~aykKaL---------eldP~Ne~~K~n 188 (304)
T KOG0553|consen 166 EEAIEAYKKAL---------ELDPDNESYKSN 188 (304)
T ss_pred HHHHHHHHhhh---------ccCCCcHHHHHH
Confidence 77777777777 567776666443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.17 Score=49.07 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG 373 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 373 (662)
.+.-|.-+...|+...|.++. .-.+ .|+..-|-..+.+++..++|++-.++-.. + -.+.-|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~-k~Fk-------v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k--------KsPIGyep 242 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLK-KEFK-------VPDKRFWWLKIKALAENKDWDELEKFAKS-K--------KSPIGYEP 242 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHH-HHcC-------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C--------CCCCChHH
Confidence 333444455556666665542 2221 13555666666666666666655544321 1 12244555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (662)
.+.+|.+.|+..+|..+... ..+..-+..|.++|++.+|.+.-
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666655544 11244555666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.024 Score=47.51 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
.-.+...+...|++++|..+|+.+...... +..-|-.|..++-..|++++|+..|....... +.+...+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334455567788888888888887765321 55666677777777888888888888887776 5666777777778888
Q ss_pred cCCHHHHHHHHHHHhhCCC
Q 038801 486 NHRPELMAAFLDEVVEDPR 504 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~ 504 (662)
.|+.+.|.+-|+..+...+
T Consensus 116 lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 8888888877777666433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.032 Score=58.12 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchH
Q 038801 525 LEDAKRTLRRMIFLQ-FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 603 (662)
+..+.+..++..... ...+...|..+.-.....|++++|...++++. .+.|+...|..+...+...|+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---------~L~ps~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---------DLEMSWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---------HcCCCHHHHHHHHHHHHHcCCHH
Confidence 344555555544321 23345678877666777899999999999999 45578889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH
Q 038801 604 AVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 604 ~A~~~~~~m~~~~~~p~~ 621 (662)
+|.+.+++....++....
T Consensus 471 eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 471 LAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCCCch
Confidence 999999999888877543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.12 Score=44.14 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=84.5
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 435 QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.|++..--.|..++.+.|+..+|...|++....-...|......+.++....++...|...++.+.+.++-.-+...--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555666666677777777777766665545556566666666666677777777777666654322222334456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+...|...|+++.|+.-|+...+. .|+...-.-....+.+.|+.+++..-+.++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 677888889999999999988874 6665433333344566676666554444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.037 Score=56.13 Aligned_cols=120 Identities=10% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHhcCCc--hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 148 LLGSMRNANTA--APAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 148 ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
.=++|.+-++. -+-+.-++++.++|..|+.. ++...|+-.|++.+|-++|.+.
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~--------------------- 658 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRS--------------------- 658 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHc---------------------
Confidence 33444444433 33445566777777666543 3556667788888888888763
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcC
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLG 305 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 305 (662)
|.-..|+++|.+|+-. -...-+...|..++-..+.++-.+.. -|..--.+..+++...|
T Consensus 659 ---------G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaG 717 (1081)
T KOG1538|consen 659 ---------GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAG 717 (1081)
T ss_pred ---------CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhccc
Confidence 5556666666665421 12234445555555444444332221 11111123345555667
Q ss_pred ChhhHHHH
Q 038801 306 NLESASRT 313 (662)
Q Consensus 306 ~~~~A~~~ 313 (662)
+.++|..+
T Consensus 718 e~~KAi~i 725 (1081)
T KOG1538|consen 718 EHVKAIEI 725 (1081)
T ss_pred chhhhhhh
Confidence 77777665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=60.68 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=77.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHH
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFM 629 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~ 629 (662)
.-+.+.++|.+|+..|.+.+ .+.|+ .+.|.--..+|.+.|.++.|++-.+...+.++. ...|..+..++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34567899999999999999 56665 466677788899999999999999998776654 34667777777
Q ss_pred HHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 630 ENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 630 ~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...|++++|.++++++++++|.++
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcH
Confidence 888999999999999999999877
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=47.14 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+...+.+.|++++|.+.++++.+..+. ++.+..+...+...|+.+.|...++++++++|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999999988865 56777777777888999999999999999998753
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0082 Score=52.63 Aligned_cols=94 Identities=5% Similarity=-0.095 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH
Q 038801 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFSS--QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC 334 (662)
Q Consensus 257 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 334 (662)
..|..+...+...|++++|...++........+ ...++..+...|...|+.++|...+.+.+...+. ...++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-----~~~~~~ 110 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-----LPQALN 110 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----cHHHHH
Confidence 345555566667788888888888877653222 1346777888888888888888888777765321 344555
Q ss_pred HHHHHHH-------hcCCHHHHHHHHHH
Q 038801 335 EVVKGFL-------QNGNVKGLANLIIE 355 (662)
Q Consensus 335 ~li~~~~-------~~~~~~~a~~~~~~ 355 (662)
.+...+. ..|+++.|+..+++
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555555 55565555444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0097 Score=56.87 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=89.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHH---HhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHH
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDE---VVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-----NDQ 545 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~ 545 (662)
.|..|...|.-.|+++.|+...+. +.+.+|-+. ....+..+..++.-.|+++.|.+.|+.....-++. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666667788887766543 222233222 23467778888888899999998887755421111 223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+-.+|...|.-..++++|+.++.+-....++..+ ..-....+..|..++...|..+.|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4557777777778888898888776644432211 11234678888999999999999888876654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.22 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHHccCchHHHHHHHHHHHhC
Q 038801 593 LYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
-.+|.++|+-.||.++++++...
T Consensus 824 qkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhhhh
Confidence 34677888888888888887544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.056 Score=46.01 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=49.3
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND---QT 546 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~ 546 (662)
.|+...-..|..++...|+..+|...|.+...- ...-|....-.+.++....++...|...++.+.+.. |+. .+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 445445555555555555555555555555442 223344444444555555555555555555555431 211 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
--.+.+.+...|++.+|..-|+...
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3334445555555555555555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.35 Score=47.49 Aligned_cols=352 Identities=9% Similarity=0.066 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcC----CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCcHHh
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLG----VRPNESSFGFLAYLYALKGLQEKIVELESLMNE---FGFSSQMVF 293 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~---~g~~~~~~~ 293 (662)
..=+...+.+... |++.++..++++|...= ..-+..+|+.++-.+++. +|-++++ ..+-|| .
T Consensus 129 ~l~~i~a~sLIe~-g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd--y 197 (549)
T PF07079_consen 129 FLDEIEAHSLIET-GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD--Y 197 (549)
T ss_pred HHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH--H
Confidence 3445666677776 99999999999887643 347888888866555443 2333322 223333 1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcccccchH
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN--GNVKGLANLIIEAQKLEPSGIVVDRSVG 371 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 371 (662)
| -+|-.|.+.=..-++.. |. ...|.......++....-. .+..--+++++.... .-+.|+....
T Consensus 198 Y-emilfY~kki~~~d~~~-Y~---------k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~---~yv~p~~~LV 263 (549)
T PF07079_consen 198 Y-EMILFYLKKIHAFDQRP-YE---------KFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN---FYVHPNYDLV 263 (549)
T ss_pred H-HHHHHHHHHHHHHhhch-HH---------hhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh---hccCCchhHH
Confidence 2 23334433211111111 11 1222233333333332211 111112222322222 4455553222
Q ss_pred H-HHHHHHHhcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH----
Q 038801 372 F-GIISACVNLGLSDKAHSILDEMNACGCSV----GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD---- 442 (662)
Q Consensus 372 ~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---- 442 (662)
. .++..+.. +.+++..+.+.+....+.+ =+.++..++....+.++...|...+.-+... .|+...-.
T Consensus 264 i~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Klll 339 (549)
T PF07079_consen 264 IEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLL 339 (549)
T ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhc
Confidence 2 23333333 5566666655554432211 2346777788888888888888888777654 44433211
Q ss_pred ---HHHHHHHcC----CCHHHHHHHHHHHHHcCCCCCcccHHHHH---HHHHhcCC-HHHHHHHHHHHhhCCCCccchhh
Q 038801 443 ---ALIEASITS----QDFQSAFSLFRDMREARIYDLKGSYLTIM---TGLMENHR-PELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 443 ---~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll---~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
.+-+..+.. -+...=+.+|+.....++ ........|+ .-+-+.|. -+.|.++++.+.+-. .-|..+
T Consensus 340 s~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec 416 (549)
T PF07079_consen 340 SPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIEC 416 (549)
T ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHH
Confidence 122222211 123344455555554443 1112222233 23444454 678888888887631 112222
Q ss_pred HHHHH----HHHHhc---CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHHhhcccC
Q 038801 512 WNSII----HAFCKA---GRLEDAKRTLRRMIFLQFEPND----QTYLSLING--YVTAEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 512 ~~~li----~~~~~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
-|.+. ..|.++ ..+.+-..+-+-+.+.|+.|-. ..-|.|.+| +..+|++.++.-.-.-+.
T Consensus 417 ~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~------- 489 (549)
T PF07079_consen 417 ENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT------- 489 (549)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------
Confidence 22222 233322 2233344444445567877743 344555443 345799999887665555
Q ss_pred CCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 579 QKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 579 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.+.|++.+|..++-++....++++|..++.++.
T Consensus 490 --~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 490 --KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred --HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 688999999999999999999999999998864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=46.81 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhh-hhhhhHHHHHHHHhhHH
Q 038801 585 EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHK-KLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 585 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~-~~~~a~~~~~~~~~l~p 650 (662)
+..+|..+...+.+.|++++|+..|++..+.++. +..+..+...+...| +.+.|.+.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567888899999999999999999999887765 445555555556668 79999999999999987
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.012 Score=58.55 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=50.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
..+...|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 4445566666666666666655221 44555556666666666666666666666553 333444555555555555555
Q ss_pred HHHHHHHHHhh
Q 038801 491 LMAAFLDEVVE 501 (662)
Q Consensus 491 ~a~~~~~~~~~ 501 (662)
+|...|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.11 Score=50.11 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=100.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCccchh-------------
Q 038801 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG--LMENHRPELMAAFLDEVVEDPRVEVKTH------------- 510 (662)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~------------- 510 (662)
.++...|+.++|..+-....+..- . ..+..++++ +.-.++.+.+...|++...- .|+..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~-~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA-T--NAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc-c--hhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHH
Confidence 355667888888777666665431 1 234444443 33456667777777765542 22211
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFL---QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH- 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~- 586 (662)
.+..=.+-..+.|++..|.+.|.+.+.. .++|+...|.-...+..+.|+.++|+.--++.. .+.+.-
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---------~iD~syi 321 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---------KIDSSYI 321 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---------hcCHHHH
Confidence 1122223445788999999999998863 344555667777777788899999998887777 333221
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK 625 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 625 (662)
..|..-..++.-.++|++|++-++++.+..-.+.+-..+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 222223334556788999999998887665544443333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.11 Score=48.38 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 397 (662)
....+...|++++|.+.|+++....+.+.. -......+..++.+.+++++|...+++.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344445566666666666665542222100 0000112445555556666666666555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.027 Score=49.50 Aligned_cols=87 Identities=9% Similarity=-0.082 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD--VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 481 (662)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555556666666666666666654422221 2455566666666666666666666666543 223334444444
Q ss_pred HHHhcCCHHH
Q 038801 482 GLMENHRPEL 491 (662)
Q Consensus 482 ~~~~~~~~~~ 491 (662)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555554433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.26 Score=47.76 Aligned_cols=166 Identities=14% Similarity=0.002 Sum_probs=104.8
Q ss_pred ccHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH--HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH-
Q 038801 257 SSFGFLA-YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISG--YVKLGNLESASRTILLCLGGGNMEQSDFSKET- 332 (662)
Q Consensus 257 ~t~~~li-~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~- 332 (662)
.++..+- .++.-.|+.++|.++-...++.. + ...+..++++ +--.++.+.|..-|.+.+.-. |+-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld------pdh~~s 239 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD------PDHQKS 239 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccC------hhhhhH
Confidence 3444332 34556788888877766666543 1 2223333333 223466777777776666542 12111
Q ss_pred ------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038801 333 ------------YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCS 400 (662)
Q Consensus 333 ------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 400 (662)
|..=.+-..+.|++..|.+.|.+...+.|.+..++...|.....+..+.|+.++|+.-.+.....+ .
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~ 318 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-S 318 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-H
Confidence 111122345788999999999999888888888888888888888889999999988887776643 1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 401 VGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
.-+..|-.-..++.-.++|++|.+-|+...+.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11122222334455567888888888877665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.37 Score=46.28 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=25.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 415 KEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+.|+.+.|..+-+..-.. .|. ...+...+...|..|+|+.|+++++.-+.
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345555555555544433 222 23445555555555666666555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.038 Score=47.02 Aligned_cols=76 Identities=21% Similarity=0.393 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 589 (662)
+...++..+...|++++|.++.+.+... .| |...|..+|.+|...|+..+|++.|+++.+.+.+ +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~--elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE--ELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--HHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH--HhCcCcCHHHH
Confidence 5677788888999999999999999985 45 5679999999999999999999999999877765 56899988654
Q ss_pred H
Q 038801 590 D 590 (662)
Q Consensus 590 ~ 590 (662)
.
T Consensus 140 ~ 140 (146)
T PF03704_consen 140 A 140 (146)
T ss_dssp H
T ss_pred H
Confidence 3
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.88 E-value=1.1 Score=49.82 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
+++++|+..+.++. ...|.-.+..--+.|.+.+|+.++..=.+.. ...|.+...-+...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~----k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEKQ----KVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHHH----HHHHHHHHHHHHHhccccHHHHHH
Confidence 56666666665553 3345555555567788888887774322211 124555555666677888887777
Q ss_pred HHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 497 DEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ--TYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+..-+ ..--+.+|..+|+|.+|+.+..++.. .-|.. +-..|+.-+...+++-+|-++..+..
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~--- 1026 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL--- 1026 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh---
Confidence 76543 24567788889999999999888763 22332 33677788888899999988888777
Q ss_pred cccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 575 STDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 575 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
. .| ...+..++++..+++|..+.....
T Consensus 1027 ----s---d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 ----S---DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ----c---CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1 11 223445777788888888876654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.031 Score=45.07 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=37.1
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCC
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDL--KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 524 (662)
+-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..+|++.....+-.+ +......+..++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3344445555555555444443222 12233333444444444444444444443311100 11111112234455666
Q ss_pred HHHHHHHHHHHH
Q 038801 525 LEDAKRTLRRMI 536 (662)
Q Consensus 525 ~~~A~~~~~~m~ 536 (662)
.++|++.+-...
T Consensus 91 ~~eAl~~~l~~l 102 (120)
T PF12688_consen 91 PKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666666655444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.72 Score=47.79 Aligned_cols=207 Identities=13% Similarity=0.059 Sum_probs=111.5
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CCCCCcccHHH----H--HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVL-GVRPNESSFGF----L--AYLYALKGLQEKIVELESLMNEFGFSS 289 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~----l--i~~~~~~g~~~~a~~~~~~~~~~g~~~ 289 (662)
.|-...|..+....... -.++.|...|-+.... |++.-...-.. + ...-+--|++++|+++|-+|.+.+
T Consensus 689 nPHprLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 56666787777766665 7777777777665432 22211000000 0 011122488889998887776654
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
..|..+.+.|++-...+++. +-... ..-.--...|+.+...+.....+++|.+.|..-..
T Consensus 765 ------LAielr~klgDwfrV~qL~r-~g~~d--~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------- 824 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIR-NGGSD--DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------- 824 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHH-ccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 35666777788777766532 11110 00011235677777778888888888887765321
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
....+.++.+...+++-+.+...+ +-+....-.+..++.+.|.-++|.+.|-+-.. | ..-+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHH
Confidence 113555665555555544443332 33444555566666666666666665543321 1 12234455
Q ss_pred cCCCHHHHHHHHH
Q 038801 450 TSQDFQSAFSLFR 462 (662)
Q Consensus 450 ~~g~~~~A~~~~~ 462 (662)
..++|.+|.++-+
T Consensus 890 ~LnQW~~avelaq 902 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.78 Score=48.11 Aligned_cols=342 Identities=11% Similarity=-0.015 Sum_probs=170.3
Q ss_pred CCCCChHHHH-----HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCC---cHHHHHHHHHHHHHhh
Q 038801 137 PKLLDFQTVH-----TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNS---NFVAFLKVFEECCRIA 208 (662)
Q Consensus 137 ~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 208 (662)
|++.+..-|. .++.-+...+.+..|+++-..+...-.. .+. .+.-...-+.+.. +.+.+..+-+++.
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~-Vl~~Wa~~kI~~~d~~d~~vld~I~~kls--- 501 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDR-VLLEWARRKIKQSDKMDEEVLDKIDEKLS--- 501 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccH-HHHHHHHHHHhccCccchHHHHHHHHHhc---
Confidence 4555555443 3566677788888888887777431111 111 1222222222221 2222233333321
Q ss_pred hhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcC----CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 209 LDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLG----VRPNESSFGFLAYLYALKGLQEKIVELESLMNE 284 (662)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 284 (662)
.......+|..+-+..... |+++.|..+++.=...+ +-.+..-+...+.-+...|+.+....++-.+..
T Consensus 502 ------~~~~~~iSy~~iA~~Ay~~-GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 502 ------AKLTPGISYAAIARRAYQE-GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred ------ccCCCceeHHHHHHHHHhc-CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1123445666666655565 88888888776422221 011223344455555666666666655555443
Q ss_pred cCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhC-C
Q 038801 285 FGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIE--AQKLE-P 361 (662)
Q Consensus 285 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~--m~~~~-~ 361 (662)
. .+...+... ..+.-.|..+|.+.++..+ ..+ + ..+-+.++-.++..-|.. ..... -
T Consensus 575 ~---~~~s~l~~~------l~~~p~a~~lY~~~~r~~~-------~~~---l-~d~y~q~dn~~~~a~~~~q~~~~~~~~ 634 (829)
T KOG2280|consen 575 K---LNRSSLFMT------LRNQPLALSLYRQFMRHQD-------RAT---L-YDFYNQDDNHQALASFHLQASYAAETI 634 (829)
T ss_pred H---HHHHHHHHH------HHhchhhhHHHHHHHHhhc-------hhh---h-hhhhhcccchhhhhhhhhhhhhhhhhh
Confidence 2 111111111 1233445555656555431 111 1 111122222222222211 00000 0
Q ss_pred CCcccccchHHHHHHHHHhcCChHHH----------HHHHHHHHH-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 362 SGIVVDRSVGFGIISACVNLGLSDKA----------HSILDEMNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS 430 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~~~~~~~~~a----------~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (662)
.+..|+ .....+.|.+.....-. .++.+.+.. .|..-.--+.+--+.-+...|+..+|.++-.+.+
T Consensus 635 ~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk 711 (829)
T KOG2280|consen 635 EGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK 711 (829)
T ss_pred cccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC
Confidence 122222 22334444444332111 112222222 1222223344555666777788888888877776
Q ss_pred hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh
Q 038801 431 SSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH 510 (662)
Q Consensus 431 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 510 (662)
-||-..|-.-+.+++..+++++-+++-+.+. + +.-|.....+|.+.|+.++|.+++.+...
T Consensus 712 ----ipdKr~~wLk~~aLa~~~kweeLekfAkskk----s--PIGy~PFVe~c~~~~n~~EA~KYiprv~~--------- 772 (829)
T KOG2280|consen 712 ----IPDKRLWWLKLTALADIKKWEELEKFAKSKK----S--PIGYLPFVEACLKQGNKDEAKKYIPRVGG--------- 772 (829)
T ss_pred ----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----C--CCCchhHHHHHHhcccHHHHhhhhhccCC---------
Confidence 5788888888888888888887666544432 1 24677788888888888888888766532
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLR 533 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~ 533 (662)
+.-.+.+|.+.|++.+|.++--
T Consensus 773 -l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 -LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -hHHHHHHHHHhccHHHHHHHHH
Confidence 1246677788888877776543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0049 Score=44.43 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccC-chHHHHHHHHHHHhCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGG-FFDAVMQVVEKSQEMK 616 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~ 616 (662)
+...|..+...+...|++++|+..|++.. .+.|+ ...|..+..++.+.| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai---------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI---------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH---------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45688899999999999999999999999 33454 478888999999999 7999999999987654
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=50.86 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCc--cchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVE--VKTHDWNSIIHAFCK---AGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 552 (662)
.++-+|....+++..+++.+.+..-.... -...+--...-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334555555555555555544421110 011111222333444 6666666666666444444556666666655
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCch----HHHHHHH----HHHHhC
Q 038801 553 GYVT---------AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFF----DAVMQVV----EKSQEM 615 (662)
Q Consensus 553 ~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~m~~~ 615 (662)
.|-. ....++|+..|.+.- .+.||...---+...+.-.|.. .+..++. ....+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---------e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---------EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---------cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 5543 123455666665554 2234332111111112222221 1222222 111223
Q ss_pred CCC---CCHH--hHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 616 KVF---VDKW--KYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 616 ~~~---p~~~--~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
|.. .+-| .+++.++...||.+.+.++++++.++.|.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 322 3333 23366666677777777777777776544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0076 Score=42.78 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
+...+...|++++|++.|+++. +. .| +...+..+..++.+.|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l-------~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL-------KQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH-------CC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-------HH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567888999999999999999 33 36 458888999999999999999999999976554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=55.61 Aligned_cols=105 Identities=10% Similarity=-0.081 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC----CC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF----VD 620 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~ 620 (662)
..|...+..+.+.|++++|+..|+.+....+ +....| ..+..+..++...|++++|...|+.+.+.-+. |+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP---~s~~a~--~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYP---DSTYQP--NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 4676666666677999999999999995444 222223 45667888999999999999999999765443 66
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 621 KWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 621 ~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
.+..+...+...|+.+.|...++++++..|....
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6666666667889999999999999998776544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0053 Score=44.10 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=25.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
.|++++|.++|+.+.... +.+..++..+..+|.+.|++++|..+++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555554442 234444445555555555555555555555544
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.038 Score=47.07 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 038801 340 FLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419 (662)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (662)
....++.+.+.+.++++..+....+-++...+. -+......++.+. ..+...++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~----------W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEE----------WVEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTST----------THHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccH----------HHHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 345667777777777776655444444422200 0111111122111 12445566667777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH-----HcCCCCCccc
Q 038801 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR-----EARIYDLKGS 475 (662)
Q Consensus 420 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 475 (662)
++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++. +.|+.|+..+
T Consensus 79 ~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 77777777777652 2266777777888888888888777777664 2467776544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.37 Score=43.63 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
..++.-|=......+|...+..+.+. .-..- -.+.+-|.+.|.+..|..-++.+.+.++ +..-.......+
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l 184 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARL 184 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHH
Confidence 33333343444455555554444431 01111 2245667788888888888888885443 222223456677
Q ss_pred HHHHHccCchHHHH
Q 038801 593 LYALVKGGFFDAVM 606 (662)
Q Consensus 593 ~~~~~~~g~~~~A~ 606 (662)
+.++.+.|..+.|.
T Consensus 185 ~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 185 AEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHTT-HHHHH
T ss_pred HHHHHHhCChHHHH
Confidence 77888888877443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.031 Score=45.55 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--------cCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST--------DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
|..++..+|.++++.|+.+....+++..-..-.. .......|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456777788888888887777777655422111 11445678999999999999999999999999999754
Q ss_pred -CCC--CCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 615 -MKV--FVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 615 -~~~--~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
-++ ....|..++..+...-+.....++......-++.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~~~~~~~~~~~~ 120 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSSKREDRAARYFLKCWNYM 120 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcCCcccccHHHHhhhhHhH
Confidence 343 3569999999998887766555554444444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.48 Score=43.00 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH----
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM---- 480 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll---- 480 (662)
+.+.++.++.-.|.+.-....+.+..+.....+......|+..-.+.|+.+.|...|++..+..-..+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666666777777777777766545566677777777777777777777777666543334444444443
Q ss_pred -HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038801 481 -TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS 549 (662)
Q Consensus 481 -~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 549 (662)
..+.-.+++..|...++++....+..| ..-|.-.-+..-.|+...|.+..+.|+.. .|...+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~--~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNA--VANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCch--hhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 234455666777777777665433322 22233233333458888999999998874 555544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.092 Score=42.36 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVG--LGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455566666666666555554332 223334445555555555555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.036 Score=52.05 Aligned_cols=102 Identities=10% Similarity=0.015 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
..|...+..+.+.|++++|...|+.+++. .|+. ..+-.+...|...|++++|...|+.+...++ +... .
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~--~ 216 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPK--A 216 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcc--h
Confidence 34666665556678999999999998875 5554 4667788888889999999999999984333 1111 2
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+...+...|+.++|.++++++.+.-+.
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 234445566777889999999999988765544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.058 Score=51.83 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFL-----QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+.-+|...|.-..++++|+..+.+-+.- ...-....+.+|..+|...|..++|+.+.+.-.+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444555555555666666655443321 011123466677777777777777777776665443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.014 Score=43.25 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.+|+.+...|...|++++|+..|++..+..+..+. -.|+ ..++..+..++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57889999999999999999999999976442211 2344 47889999999999999999999998753
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.16 Score=47.24 Aligned_cols=108 Identities=14% Similarity=0.066 Sum_probs=67.2
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc---CChHHHHHHH
Q 038801 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL---GLSDKAHSIL 391 (662)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~ 391 (662)
+..+...+. |...|-.|...|.+.|+.+.|..-|.+..++.++ |...+..+..++... ..-.++..+|
T Consensus 146 e~~L~~nP~-----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~----n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 146 ETHLQQNPG-----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD----NPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHhCCC-----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 444555433 7778888888888888888888888887654332 222333333333322 2345566777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 392 DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
++++..+ +.|+.....|...+...|++.+|...|+.|.+.
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7776654 445566666666667777777777777777665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0064 Score=43.65 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=51.5
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHH
Q 038801 153 RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALE 228 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 228 (662)
...|++++|+.+|+.+... .|.+......+...|.+.|++++|.++++++.. ..|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~---------~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK---------QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG---------GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCcCHHHHHHHHh
Confidence 4678999999999999885 466777777899999999999999999999876 5677666665543
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.92 Score=44.55 Aligned_cols=165 Identities=14% Similarity=0.081 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACG---CSVGLGVYVPTLKAYCK---EHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
..++-+|-...+++...++.+.+.... +.-...+-.....++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345555666777777777777766541 11122222334445555 677777777777755554555666666665
Q ss_pred HHHHc---------CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH----HHHHHHH---HHHh-hCCC--Cc
Q 038801 446 EASIT---------SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP----ELMAAFL---DEVV-EDPR--VE 506 (662)
Q Consensus 446 ~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~---~~~~-~~~~--~~ 506 (662)
..|-. ....++|...|.+.-+.. ++..+-..+...+.-.|.. .+..++- ..+. ++.. -.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 54421 123556666666555443 3322211222222222221 1111111 1111 1111 12
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
.+--.+..++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23334566777777778888888888877764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.31 Score=44.12 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS 362 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 362 (662)
+...|++++|.+.|.+.....+.... .....-.++.++-+.|++++|...+++..+..|.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~--a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPY--APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34455566666555555544322111 2233344555555566666666666555544333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.038 Score=45.06 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
|..++..+|.++++.|+.+....+++..-.-++...... +. .....+..|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc----------cCCCCCCCCCHHHHHHHH
Confidence 345666777777777777777666655432221110000 00 122236677777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFL-QFEPNDQTYLSLINGYV 555 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~ 555 (662)
.+|+..|++..|+++.+...+. ++.-+..+|..|+.-+.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777766653 45555667777766444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.4 Score=43.40 Aligned_cols=151 Identities=8% Similarity=0.041 Sum_probs=114.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 038801 474 GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY-LSLIN 552 (662)
Q Consensus 474 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 552 (662)
..|-..+....+..-++.|..+|-+..+..-+.+++.+++++|.-++ .|+..-|..+|+--... .||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 45666777777888889999999999887447788999999999887 57888999999976654 6777554 44566
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENH 632 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~ 632 (662)
.+...++-+.|..+|+....++.. . --..+|..++.--..-|++..|..+=+.|.+.-++-+...-..+.+...
T Consensus 475 fLi~inde~naraLFetsv~r~~~---~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEK---T---QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHH---h---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 667789999999999977743331 1 1147899999998999999999998888877666555444445555444
Q ss_pred h
Q 038801 633 K 633 (662)
Q Consensus 633 ~ 633 (662)
.
T Consensus 549 ~ 549 (660)
T COG5107 549 A 549 (660)
T ss_pred c
Confidence 3
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.18 Score=52.09 Aligned_cols=107 Identities=12% Similarity=-0.002 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 523 GRLEDAKRTLRRMIFLQFEPNDQTYLSL-INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
.+.+.|.++++.+.+. .|+...|... .+.+...|+.++|++.|++....-. .=-+.....+.-+...+.-.++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~----~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS----EWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh----hHHhHHHHHHHHHHHHHHHHch
Confidence 4566677777777654 5666544332 2333445777777777775551000 0001223445555666667777
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHh-hhh
Q 038801 602 FDAVMQVVEKSQEM-KVFVDKWKYKQAFMENH-KKL 635 (662)
Q Consensus 602 ~~~A~~~~~~m~~~-~~~p~~~~~~~~~~~~~-~~~ 635 (662)
+++|.+.+..+.+. .+.+..+.|..+.|... ++.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 77777777776543 44455666666666443 444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.1 Score=44.59 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 038801 83 NTDEAWKSFKSLTANSLFPSKPVTNSLIAHLS 114 (662)
Q Consensus 83 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 114 (662)
..++|.++.+. .|.+..|..+...-.
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al 703 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYAL 703 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHH
Confidence 34455554443 267777776665443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.83 Score=41.09 Aligned_cols=214 Identities=12% Similarity=0.176 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..|.....+|-...++++|...+.+..+ +..-|...|.+ ...++.|..+.++|.+.. --...|+--.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~----~yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK----GYENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH----HHHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence 3455556667777777777776666542 22223222221 123344555555554421 1223455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
..|..+|..+.|-..+++.-+. ..+.++++|+++|++...- ....++..
T Consensus 99 ~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralav---------------ve~~dr~~ 147 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAV---------------VEEDDRDQ 147 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHH---------------HhccchHH
Confidence 6666677666666655554321 2233455555555543321 11111111
Q ss_pred HHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 038801 491 LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF----LQFEPND-QTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~~~~~~a~~ 565 (662)
.|.+ .|...-..+.+..++++|-..|.+-.. ..-.++. ..|...|-.+....++..|.+
T Consensus 148 ma~e----------------l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aek 211 (308)
T KOG1585|consen 148 MAFE----------------LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEK 211 (308)
T ss_pred HHHH----------------HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2211 233333344455555554444332221 1112233 345555566666677777777
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHH
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
.+++-... + ...-.-+..+...|+.+| ..|+.+++..++
T Consensus 212 c~r~~~qi-p---~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 212 CYRDCSQI-P---AFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhcchhcC-c---cccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77654310 0 111122345666666665 456666665554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.28 Score=45.75 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=60.0
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCC-CHH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA---GRLEDAKRTLRRMIFLQFEP-NDQ 545 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p-~~~ 545 (662)
|.|...|-.|...|...|+.+.|..-|.+..+-.|-+|+ .+..+..++... ....++.++|+++... .| |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 455555555555555555555555555555554343333 445555544432 2456777888888864 44 445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+...|...+...|++.+|...|+.|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 66666677777888888888888888
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.6 Score=42.27 Aligned_cols=250 Identities=14% Similarity=0.063 Sum_probs=139.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCcccccch--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 038801 342 QNGNVKGLANLIIEAQKLEPSGIVVDRSV--GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419 (662)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (662)
-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.+.|.++-+..-... +--.....+.+...|..|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35666666666666543 111111 1122233345666666666666655442 22335666777777777777
Q ss_pred HHHHHHHHHHHhCC-CCCChh--hHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhcCCHHHH
Q 038801 420 AEATQLVMDISSSG-LQLDVG--NYDALIEASIT---SQDFQSAFSLFRDMREARIYDLKG-SYLTIMTGLMENHRPELM 492 (662)
Q Consensus 420 ~~A~~~~~~m~~~g-~~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a 492 (662)
+.|+++.+.-+... +.+++. .-..|+.+-.. .-+...|...-.+..+ +.|+.. .-..-..++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 77777776654332 223321 12223322111 1234444444433333 234432 233334677888888888
Q ss_pred HHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
-.+++.+-+. .|...++ .+..+.+.|+. ++.=+++..+. .++||. .+.-.+..+-...|++..|..--+..
T Consensus 283 ~~ilE~aWK~---ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWKA---EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHhc---CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8888887664 3333333 23334555553 44434333321 245655 56667777778889988888776666
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHc-cCchHHHHHHHHHHHhCC
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVK-GGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~ 616 (662)
. ...|....|..|.+.-.- .|+-.++..++-+.....
T Consensus 356 ~---------r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 356 A---------REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred h---------hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 6 567888888887776554 499999999988876543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.9 Score=44.70 Aligned_cols=185 Identities=15% Similarity=0.050 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
........-+..+.+...++.|+.+-+.-.... -..........+.+.+.|++++|...|-+... -..|.
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--------~le~s 401 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--------FLEPS 401 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--------cCChH
Confidence 344455667788888888888887765432110 01112233344555678999999887776543 24444
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
.+|.-|... .....-...++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+.
T Consensus 402 -----~Vi~kfLda-q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~ 471 (933)
T KOG2114|consen 402 -----EVIKKFLDA-QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALE 471 (933)
T ss_pred -----HHHHHhcCH-HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHH
Confidence 355666776 7788888889999999865 55566778999999999998877776544 2311 111344666
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA 356 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 356 (662)
.+-+.+-.++|..+ ...... ....... .+-..+++++|++.+..+
T Consensus 472 Ilr~snyl~~a~~L-A~k~~~--------he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 472 ILRKSNYLDEAELL-ATKFKK--------HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhChHHHHHHH-HHHhcc--------CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 67777777777665 222221 2222222 234567888888888654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.4 Score=40.40 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.+.+-|.+.|.+-.|..-+++|.+..+. ..-....+-.+..+|.+.|-.++|...-+-+....+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 3456677889999999999999943221 111224556677788899999998887766654433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.042 Score=40.00 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|.+.+++++|+++++.+. ...| +...+.....++.+.|++++|.+.++...+.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l---------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL---------ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH---------HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 46777888888888888888 3344 3466677777888888888888888888776664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.5 Score=41.96 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038801 370 VGFGIISACVNLGLSD---KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE 446 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 446 (662)
++..++.++...+..+ +|..+++.+... +.-...++-.-++.+.+.++.+.+.+.+.+|...- ......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 3344556665555433 344455555332 12223455455666666777777777777777652 112333444443
Q ss_pred HH---HcCCCHHHHHHHHHHHHHcCC
Q 038801 447 AS---ITSQDFQSAFSLFRDMREARI 469 (662)
Q Consensus 447 ~~---~~~g~~~~A~~~~~~m~~~~~ 469 (662)
.+ .. .....|...+..+....+
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~ 188 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRF 188 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHh
Confidence 33 22 223445555555554433
|
It is also involved in sporulation []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.2 Score=42.17 Aligned_cols=443 Identities=9% Similarity=0.026 Sum_probs=230.0
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCC----CcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHH
Q 038801 152 MRNANTAAPAFALVKCMFKNRYFM----PFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAAL 227 (662)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 227 (662)
+-+.+++.+|..+|.++.+..-.. ..+.+.+.++.+|. ..+.+.....+....+. .|..+-...|-.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~------~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ------FGKSAYLPLFKALV 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh------cCCchHHHHHHHHH
Confidence 347778888888888887643211 11344566777775 56666666666665442 12122222222222
Q ss_pred HHHhccCCChhHHHHHHHHHHhc--CCCC------------CcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC
Q 038801 228 EGCCYGLQSVSDAEKVIETMSVL--GVRP------------NESSFGFLAYLYALKGLQEKIVELESLMNEFG----FSS 289 (662)
Q Consensus 228 ~~~~~~~~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~ 289 (662)
+.+. +.+.+|++.+....+. +-.| |-.-=+..++++...|++.+++.+++.+...= ..-
T Consensus 89 --~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 89 --AYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred --HHHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 2344 8888888888777654 3222 11122345677778899999988888876553 336
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
+..+|+.++-++++.- |.+..+... ..+-| .|..+|-.|.+.=..-++.. | ..+.|...
T Consensus 166 ~~d~yd~~vlmlsrSY--------fLEl~e~~s-~dl~p---dyYemilfY~kki~~~d~~~-Y--------~k~~peee 224 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSY--------FLELKESMS-SDLYP---DYYEMILFYLKKIHAFDQRP-Y--------EKFIPEEE 224 (549)
T ss_pred cHHHHHHHHHHHhHHH--------HHHHHHhcc-cccCh---HHHHHHHHHHHHHHHHhhch-H--------HhhCcHHH
Confidence 7888888777776542 223322211 12222 24444444443211111100 0 12334444
Q ss_pred hHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----ChhhHH
Q 038801 370 VGFGIISACVNLG--LSDKAHSILDEMNACGCSVGLG-VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL----DVGNYD 442 (662)
Q Consensus 370 ~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~ 442 (662)
.+..++....-.. ...--.++++.-.+.-+.|+-. +...|+..+.+ +.+++..+.+.+....+.+ =+.++.
T Consensus 225 L~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 225 LFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred HHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444443333221 2222334444444444555532 33334444444 5666666665554432211 245788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccc-------HHHHHHHHHh-cC---CHHHHHHHHHHHhhCCCCccchhh
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGS-------YLTIMTGLME-NH---RPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~ll~~~~~-~~---~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
.++...++.++..+|.+.+.-+.-.. |.... -..+-+..+. .. +...=..+++.+... .+.. ...
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~-DiDr-qQL 378 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY-DIDR-QQL 378 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-cccH-HHH
Confidence 88888999999999998887665443 21111 1112222221 11 122223334433321 2211 111
Q ss_pred HHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCC-CHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHhhcccCC
Q 038801 512 WNSII---HAFCKAGR-LEDAKRTLRRMIFLQFEP-NDQTYLSLI----NGYVT---AEQYFSVLMMWHEIKRKISTDGQ 579 (662)
Q Consensus 512 ~~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~p-~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~~~~~~~ 579 (662)
-.-|+ .-+-+.|. -++|+++++...+. .| |..+-|.+. .+|.. ...+..-+.+-+-+. +
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-------e 449 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-------E 449 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------h
Confidence 22233 23344555 88999999999873 44 433333332 23332 133334444433334 6
Q ss_pred CCCccc----HHHHHHHHHH--HHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHhhhhhhhHHH
Q 038801 580 KGIKFE----HNLVDAFLYA--LVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM-ENHKKLKVAKLR 641 (662)
Q Consensus 580 ~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~a~~~ 641 (662)
.|+.|- ..+-|.|.+| +...|++.++.-+-.-+.+-.|.|..++. ++.| ...+++++|-..
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RL-lGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRL-LGLCLMENKRYQEAWEY 517 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHH-HHHHHHHHhhHHHHHHH
Confidence 677763 3566666665 56899999999887777766665555444 5555 445777766543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.046 Score=39.77 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=23.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
.|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444443211 333344444444444444444444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.034 Score=41.16 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFL--QFE---PN-DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888888888888877753 111 22 24777888888888888888888888763
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.6 Score=39.73 Aligned_cols=142 Identities=8% Similarity=0.003 Sum_probs=102.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN-- 552 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-- 552 (662)
..+.++..+...+.+.-....++++++. ...-+......|+..-.+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4566777777888888888999998885 3344556778888888899999999999998887544566666665543
Q ss_pred ---HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH
Q 038801 553 ---GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK 625 (662)
Q Consensus 553 ---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 625 (662)
.|.-++++.+|...+.++. ..+-+ |....|.-.-++.-.|+...|++.++.|.+..+.|..-..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~-------~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEIL-------RMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhcc-------ccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhH
Confidence 3445788999998888887 43321 33333433334556799999999999999888877655544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.9 Score=39.80 Aligned_cols=223 Identities=16% Similarity=0.097 Sum_probs=128.6
Q ss_pred CChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCCHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCS-VGLGVYVPTLKAYCKEHRTAEATQLVMDISSS-GLQLDVGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (662)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555554322 13466666777777777777777777776642 123345556666666777777777777
Q ss_pred HHHHHHHcCCCCCcccHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 460 LFRDMREARIYDLKGSYLTIMT-GLMENHRPELMAAFLDEVVEDPRV--EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
.+.........+ ......... .+...|+.+.+...+.+.... .. ......+......+...++.+.+...+.+..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 777777654332 122222333 567777777777777776442 21 1222333344444556677777777777777
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 537 FLQFEPN--DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 537 ~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.. .++ ...+..+...+...++++.|...+.... ...|+ ...+..+...+...|..+++...+++..
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL---------ELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHH---------hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 333 4566666666666677777777777776 22232 2333334444445556777777776665
Q ss_pred hCCC
Q 038801 614 EMKV 617 (662)
Q Consensus 614 ~~~~ 617 (662)
+...
T Consensus 264 ~~~~ 267 (291)
T COG0457 264 ELDP 267 (291)
T ss_pred HhCc
Confidence 4443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.73 Score=37.04 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
.....-+......|+-+.-.+++.++.+.+ .+++...--+..+|.+.|+..++-+++.++. +.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-------ekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC-------EKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-------HTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-------HhchH
Confidence 345667778888999999999999987643 7888888899999999999999999999998 67764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.19 Score=46.21 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL--DVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
.|+.-+. +.+.|++..|...|....+....- ....+--|.+++...|++++|..+|..+.+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3444333 334445555555555555542110 112233355555555555555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.39 Score=49.70 Aligned_cols=95 Identities=12% Similarity=-0.052 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcc------cHHHHHHHHhhc---CCcHHHHHHHHHHHHHhhhhhhcC
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFE------LWGGFLVDICRK---NSNFVAFLKVFEECCRIALDENLD 214 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 214 (662)
.+..++...+-.|+-+.+++.+.+..+.+...... .++..+...+.- ..+.+.|.++++.+.+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~-------- 261 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK-------- 261 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--------
Confidence 45567777777788888887777765533222111 112222222222 3344555555555543
Q ss_pred CCCccHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 038801 215 FMKPNIYACNAALEGCCYGLQSVSDAEKVIETM 247 (662)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 247 (662)
..|+...|...-.-+....|++++|++.|++.
T Consensus 262 -~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 262 -RYPNSALFLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred -hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 34555444444433333335555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.1 Score=40.15 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038801 555 VTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~ 571 (662)
+..+++.+|+.+|+++.
T Consensus 165 a~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577888888888877
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.2 Score=41.02 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSG-LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
.+|...|+.-.+..-++.|..+|.+..+.| +.+++..++++|..++. |+..-|..+|+--... .+.+..-....+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 567777887788888999999999999998 66789999999998776 7778888988765544 23333444567778
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 483 LMENHRPELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 483 ~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
+...++-+.|..+|+..+++ +..+ ..+|..+|.--..-|+...+..+-++|.+. .|...+-.....-|.-
T Consensus 476 Li~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 476 LIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 88899999999999965542 2222 357999999889999999999999998873 6666555555555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.68 Score=39.24 Aligned_cols=88 Identities=11% Similarity=-0.064 Sum_probs=55.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
-+...|++++|..+|..+...+ .-+..-+..|..++-..+++++|...|......+. -|...+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3445677777777777766654 23444556666666667777777777766555432 244445556667777777777
Q ss_pred HHHHHHHHHH
Q 038801 457 AFSLFRDMRE 466 (662)
Q Consensus 457 A~~~~~~m~~ 466 (662)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=2.4 Score=38.77 Aligned_cols=355 Identities=9% Similarity=0.050 Sum_probs=184.2
Q ss_pred cCCCCcHHhHHHHHHH-HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 038801 285 FGFSSQMVFYSSLISG-YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363 (662)
Q Consensus 285 ~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 363 (662)
.+-+||+..-|..-.. -.+..+.++|+.-|.+.++-.+..| .-.-...-.+|....+.|++++.++.|.+|.......
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKg-eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKG-EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3456666554433222 1344577888888888877643322 1123455677888888899998888888887532222
Q ss_pred ccc--ccchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 038801 364 IVV--DRSVGFGIISACVNLGLSDKAHSILDEMNAC-GCSVGL----GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL 436 (662)
Q Consensus 364 ~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 436 (662)
+.. +....++++.-...+.+.+.-.++|+.-++. .-..+. .|-.-|...|...|.+.+..+++.++.+....-
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 222 2334455666666666666666655543321 001111 233556677777788888888888877653222
Q ss_pred C-----------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 038801 437 D-----------VGNYDALIEASITSQDFQSAFSLFRDMREARI-YDLKGSYLTIMTGL-----MENHRPELMAAFLDEV 499 (662)
Q Consensus 437 ~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~ 499 (662)
| ...|..-|+.|....+-.+-..+|++...-.- .|.+ ....+|+.| .+.|++++|..-|-+.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 1 23567777778777777777778887664321 2322 233334433 4567777776555444
Q ss_pred hhCCCC--ccch---hhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 500 VEDPRV--EVKT---HDWNSIIHAFCKAG----RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 500 ~~~~~~--~p~~---~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
.+.+.- .|.. .-|-.|..++.+.| +..+| .--.-.|.+...+.|+.+|.. ++..+-..++..-
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 443221 1211 12334444444433 11111 111113445677888888765 5555555555443
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHH---------HHhCCCCCCHHhHHHHHHHHhhhhhhhHHH
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEK---------SQEMKVFVDKWKYKQAFMENHKKLKVAKLR 641 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---------m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~ 641 (662)
+ ..+--|+.+-+.+-. +.+.=+..--+++++- ..+.++.+.....++.-|.....++.-..-
T Consensus 330 ~--------~~IM~DpFIReh~Ed-Ll~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide 400 (440)
T KOG1464|consen 330 R--------SNIMDDPFIREHIED-LLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDE 400 (440)
T ss_pred h--------ccccccHHHHHHHHH-HHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHH
Confidence 3 344445443333221 2222222211121111 123455566777777777765544443333
Q ss_pred HHHHHhhH--------HHHHHHhhh
Q 038801 642 KRNFKKME--------ALIAFKNWA 658 (662)
Q Consensus 642 ~~~~~~l~--------p~~~~~~~~ 658 (662)
..++++++ ..+|+.+|.
T Consensus 401 ~n~~l~~~~~~~s~~k~~~al~kW~ 425 (440)
T KOG1464|consen 401 VNQYLELDKSKNSGSKLYKALDKWN 425 (440)
T ss_pred hhhHhccCccCCcchHHHHHHHHHH
Confidence 34444432 245666664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.3 Score=44.68 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=66.2
Q ss_pred cchhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 038801 507 VKTHDWNSIIHAFCK-----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTA----------------EQYFSVLM 565 (662)
Q Consensus 507 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------~~~~~a~~ 565 (662)
-|-.+|-.++..+.. .+.++=....++.|.+.|+.-|..+|+.|+..+-+. .+-+=+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344556666666643 345666666778888888888888888888776541 23344899
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
++++|. ..|+.||..+-..|++++.+.|-
T Consensus 145 vLeqME-------~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQME-------WHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHH-------HcCCCCchHHHHHHHHHhccccc
Confidence 999999 89999999999999999988776
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.16 Score=46.40 Aligned_cols=103 Identities=11% Similarity=0.134 Sum_probs=63.6
Q ss_pred ChhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 437 DVGNYDALIEASIT-----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 437 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. ..|. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk-----------------fiP~-nv 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK-----------------FIPQ-NV 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-----------------cccH-HH
Confidence 44445444444432 2445555666677777777777777777766655422 2221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 559 (662)
+....--|-++ -+-+.+++++|..+|+.||..+-..|+++|.+.+.
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 33333333332 34578899999999999999999999999977654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.77 Score=38.59 Aligned_cols=126 Identities=10% Similarity=0.106 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
...++..+.+.+.......+++.+..... .+...++.++..|++.+ .++.++.++. ..+......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 34555566666666777777777666522 34556777777777653 3334444442 123334444677777
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc-CchHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG-GFFDAVMQVVEKSQEMKVFVDKWKYKQAFME 630 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 630 (662)
+.+.++++.-++.++. . +...+..+... ++.+.|.+++++. -.|+.|..++.++.
T Consensus 81 ~~~l~~~~~~l~~k~~-------~---------~~~Al~~~l~~~~d~~~a~~~~~~~----~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDG-------N---------FKDAIVTLIEHLGNYEKAIEYFVKQ----NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhc-------C---------HHHHHHHHHHcccCHHHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 7777777777776555 1 11222223333 7777777777652 24556666665553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.2 Score=45.54 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=101.0
Q ss_pred CChhHHHHHHHH-HHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 038801 235 QSVSDAEKVIET-MSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRT 313 (662)
Q Consensus 235 ~~~~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (662)
++++++.++.+. -.-..++ ..-.+.+++-+-+.|..+.|.++-.+ . ..-.+...+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHH
Confidence 899998777752 1111122 33477788888899999999887532 2 1234566789999999876
Q ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHH
Q 038801 314 ILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDE 393 (662)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 393 (662)
- + ...+...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.
T Consensus 341 a----~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 341 A----K------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp C----C------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred H----H------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHH
Confidence 2 1 223788999999999999999999999988543 66777788888998888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 394 MNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD 428 (662)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (662)
...+| -++....++.-.|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77776 255666666777888877777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.4 Score=44.03 Aligned_cols=55 Identities=5% Similarity=-0.101 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+..+....|+++.|..+|++... +.||. .+|......+.-.|+.++|.+.+++..
T Consensus 344 ~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 344 MGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33333344445555555555444 24443 233333333344455555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.1 Score=37.92 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=59.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
.-+...|++++|..+|.-+...+.. +..-|..|..++-..+++++|...|......+ ..|...+......+...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3455678888888888887765322 55556667777777788888888887766654 344444555556666666666
Q ss_pred HHHHHHHHHhh
Q 038801 491 LMAAFLDEVVE 501 (662)
Q Consensus 491 ~a~~~~~~~~~ 501 (662)
.|...|.....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666666555
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.71 Score=47.09 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 457 (662)
..+.|+++.|.++.++ ..+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3444555555444221 12444555555555555555555555554332 33444444555555444
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
.++.+.....| -++..+.++.-.|+.++..+++
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444443 2333344444444444444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=3.7 Score=38.92 Aligned_cols=152 Identities=14% Similarity=0.022 Sum_probs=90.5
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH----HHHHHH
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG----IISACV 379 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~----ll~~~~ 379 (662)
.|+..+|...+.+.++..+. |...++-.=.+|..+|+.+.-...++++.- .-.+|...|.. ..-++.
T Consensus 116 ~g~~h~a~~~wdklL~d~Pt-----Dlla~kfsh~a~fy~G~~~~~k~ai~kIip----~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPT-----DLLAVKFSHDAHFYNGNQIGKKNAIEKIIP----KWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred cccccHHHHHHHHHHHhCch-----hhhhhhhhhhHHHhccchhhhhhHHHHhcc----ccCCCCcHHHHHHHHHHhhHH
Confidence 45555555556777776543 666666666777777777777777766542 22344433332 222334
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCCHHH
Q 038801 380 NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS---GLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
..|-+++|++.-++..+.+ +.|...-.++..++-..|+..++.++..+-... +--.-..-|-...-.+...+.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 6677888888777777665 556666677777777788888887776554321 000011112222334556688888
Q ss_pred HHHHHHHHH
Q 038801 457 AFSLFRDMR 465 (662)
Q Consensus 457 A~~~~~~m~ 465 (662)
|+++|+.-+
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 888887533
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.51 Score=47.08 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHH
Q 038801 524 RLEDAKRTLRRMIF-LQFEPND-QTYLSLINGYVT---------AEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDA 591 (662)
Q Consensus 524 ~~~~A~~~~~~m~~-~~~~p~~-~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ 591 (662)
..+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.++.+... .+.| |......
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---------eld~~Da~a~~~ 343 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---------DITTVDGKILAI 343 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---------hcCCCCHHHHHH
Confidence 45678888888882 2246665 345444443332 234556667666666 2333 5677777
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+..+..-.|+++.|...|++....++. ++.|.+....+...|+.+.|.+..++.++++|...
T Consensus 344 ~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 344 MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 777778888899999999999888776 56777766677778999999999999999999764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.62 Score=37.30 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=54.4
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACV 379 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~ 379 (662)
+++..|+.+.|++.|-+.+.-.+. ....||.-..++.-.|+.++|++-+++..++....-+.-...|..-...|-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 455667777777777666654322 566777777777777777777777777655432221111112222233445
Q ss_pred hcCChHHHHHHHHHHHHCC
Q 038801 380 NLGLSDKAHSILDEMNACG 398 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~ 398 (662)
..|+-+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 5667777777776666655
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.74 E-value=4.2 Score=39.08 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCC--
Q 038801 347 KGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL----SDKAHSILDEMNACGCSVGL--GVYVPTLKAYCKEHR-- 418 (662)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~-- 418 (662)
.+|.++|+.|++-++---.++..++..++.. ...+ .+.++.+|+.+.+.|+..+- +..+.++........
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 3466666666664333334455555555433 2222 23345555555555543321 222222222211111
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
...+.++++.+.+.|+++....|..+
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHH
Confidence 23455555555555555555444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.2 Score=35.75 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=21.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (662)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34455544555555555555555444 23444555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.51 Score=43.50 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
.|+.-+..| +.|++..|.+.|...++. .|+. ..+--|..++...|++++|..+|..+.+.++ -.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P------~s~KA 214 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP------KSPKA 214 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC------CCCCC
Confidence 577777655 567899999999998886 4543 3666788888889999999999988885333 2222
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
+..+--|..+..+.|+.++|..+|+++.+.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 255666777888899999999999888654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.6 Score=38.67 Aligned_cols=167 Identities=13% Similarity=0.178 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH
Q 038801 439 GNYDALIEASITSQDFQ---SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515 (662)
Q Consensus 439 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 515 (662)
.++..++.+|...+..+ +|..+++.+... .+.....+..-+..+.+.++.+.+.+.+.+|+...+. ....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~--~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH--SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc--ccchHHHH
Confidence 35666777777766544 455555555433 2333456666677777788888888888888875331 12234444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHHhhcccCCCC
Q 038801 516 IHAF---CKAGRLEDAKRTLRRMIFLQFEPNDQ-TYLS-LI---NGYVTAEQ------YFSVLMMWHEIKRKISTDGQKG 581 (662)
Q Consensus 516 i~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~-li---~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~ 581 (662)
+..+ ... ....|...+..+....+.|... .... ++ ......++ .+...++++.+.+.. ...
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~----~~~ 236 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL----GKQ 236 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh----cCC
Confidence 4444 332 3456667776666655555543 1111 11 11112111 444444455333211 222
Q ss_pred CcccH-HHHHHHHH----HHHccCchHHHHHHHHHHH
Q 038801 582 IKFEH-NLVDAFLY----ALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 582 ~~p~~-~~~~~l~~----~~~~~g~~~~A~~~~~~m~ 613 (662)
+.+.. ....+|++ .+.+.+++++|.++++-..
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222 33334433 4668999999999998643
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.6 Score=46.54 Aligned_cols=70 Identities=4% Similarity=-0.009 Sum_probs=54.0
Q ss_pred cccccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCCh--hhHHHHHHHHhccCCchhHHHHHHHHH
Q 038801 61 QTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSK--PVTNSLIAHLSSLQDNHNLKRAFASVV 130 (662)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~ 130 (662)
....+.+...++.+..+|...|++++|+..|+...+..+.... ..|..+-.+|...|+.+++...++..+
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455667888899999999999999999999998876533211 357888888888888777777776654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.4 Score=38.29 Aligned_cols=136 Identities=9% Similarity=-0.020 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH--
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYL--SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-- 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-- 586 (662)
.|..++...- .+.. +.....+.+....-.-....+. .+...+...|++++|..-++... +..-|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---------~~t~De~l 124 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---------AQTKDENL 124 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---------ccchhHHH
Confidence 3444444432 3333 4444555555431111111222 23445666777777777777666 222222
Q ss_pred --HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHhh
Q 038801 587 --NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNW 657 (662)
Q Consensus 587 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 657 (662)
.+--.|.+.....|.+++|...++.....++.+-........+...|+-++|+..+++.++.++..+-+.|
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~ 197 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREI 197 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHH
Confidence 22233455667777788888777777666655544444456666677777788777777777655554444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.5 Score=35.23 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=66.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc--ccHHHHHHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK--FEHNLVDAFLY 594 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--p~~~~~~~l~~ 594 (662)
+.+..|+.+.|++.|.+.+.. -| ....||.-..++.-.|+.++|++=+++..+. .|-+ --...|..-..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL------ag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALEL------AGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh------cCccchHHHHHHHHHHH
Confidence 467789999999999988864 44 5578998889998899999999888888732 1211 11133333344
Q ss_pred HHHccCchHHHHHHHHHHHhCCC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|-..|+.+.|..=|+..-+.|-
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCC
Confidence 56678888888888888777664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.9 Score=36.99 Aligned_cols=211 Identities=11% Similarity=-0.001 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
.|.....+|...+++++|..-+.+..+.. + .+..+ +.-...++.|.-+.+++.. +.--+..|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-E-nnrsl-------fhAAKayEqaamLake~~k---------lsEvvdl~ 94 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-E-NNRSL-------FHAAKAYEQAAMLAKELSK---------LSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-H-hcccH-------HHHHHHHHHHHHHHHHHHH---------hHHHHHHH
Confidence 34445556666777777776555554311 1 11111 1123445555555666543 22234456
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--CCCcHHhHHHHH
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEF---G--FSSQMVFYSSLI 298 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~---g--~~~~~~~~~~li 298 (662)
+-....|.+. |.++.|-..+++.-+. ...-++++|+++|...... + ...-...|..+-
T Consensus 95 eKAs~lY~E~-GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 95 EKASELYVEC-GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHh-CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 6666667776 7777766666554221 1122334444444433221 0 011122344444
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSK-ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
..+.+..++++|-..|.+...-......-++. ..|-..|-.+.-..++..|...++.--.+....-.-+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 55566666666655432221110000000111 12334444555566777777777664332111112233444455555
Q ss_pred HHhcCChHHHHHH
Q 038801 378 CVNLGLSDKAHSI 390 (662)
Q Consensus 378 ~~~~~~~~~a~~~ 390 (662)
| ..|+.+++.++
T Consensus 238 y-d~gD~E~~~kv 249 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKV 249 (308)
T ss_pred h-ccCCHHHHHHH
Confidence 4 33555555444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=7 Score=39.48 Aligned_cols=183 Identities=9% Similarity=0.042 Sum_probs=110.8
Q ss_pred ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
..|.....+++..+.......-++.+..+|...| -+...|..++.+|..+ .-+.-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4456666677777777777777777777777765 4556677777777777 455666677777665433 44444444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 445 IEASITSQDFQSAFSLFRDMREARIYDLK-----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
..-|-+ ++.+.+...|.++...-++-.. ..|.-|... -..+.+....+..++.++.|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 6777777777776655332111 112211111 13345666666666666656555555666666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
....++++|++++..+.++. ..|...-.-++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 77888888888888777754 345555555554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.32 Score=47.19 Aligned_cols=100 Identities=8% Similarity=-0.015 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc---------cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCH
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF---------EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDK 621 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~ 621 (662)
+.|.+.|++..|..-|+++...+.- ..+..+ -..++.-|..++.+.+++.+|++..++..+.+.. +-.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~--~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEY--RRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhc--cccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3455556666666666655543331 111111 1235566777889999999999999999887765 334
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 622 WKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 622 ~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...-..++...++++.|+..++++++++|.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 44557777888999999999999999999863
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=4.8 Score=36.95 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=87.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC
Q 038801 447 ASITSQDFQSAFSLFRDMREARI--YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 524 (662)
.-.+.|++++|...|+.+..... +-...+...++.++.+.+++++|...+++....++-.||+ -|-..|.+++.--.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcc
Confidence 34456777777777777765421 2233445555556666666666666666666665555554 24444444442110
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhhcccCCCCCcccHHH------------H
Q 038801 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS---VLMMWHEIKRKISTDGQKGIKFEHNL------------V 589 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~p~~~~------------~ 589 (662)
++.. ..|... |..-|++++..++ .....||... =
T Consensus 122 i~~~----------------------------~rDq~~~~~A~~~f~~~i~ryP---nS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 122 IDDV----------------------------TRDQSAARAAFAAFKELVQRYP---NSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred CCcc----------------------------ccCHHHHHHHHHHHHHHHHHCC---CCcchhhHHHHHHHHHHHHHHHH
Confidence 0000 111111 2222222222222 2222333211 1
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHhhhhhhhHHHHHHH
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVF----VDKWKYKQAFMENHKKLKVAKLRKRNF 645 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~~~~~~~~~~~~a~~~~~~~ 645 (662)
..+.+-|.+.|.+..|..-++.|.+.=.. .+....+..++...|-.++|.+..+-+
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 23556788999999999999999876322 235555566677777777777655433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.98 E-value=9.7 Score=42.79 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET----YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
|.-.++.--+.|.+++|+.++ .|+... |.+....+...+.+++|.-.|+..-+
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly------------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------- 967 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY------------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------- 967 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee------------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------
Confidence 333444444555666665543 224433 33344444556666666666655422
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLG--VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 447 (662)
..-.+.+|...|+|.+|..+..++... -+.. +-..|+.-+...++.-+|-++..+.... ..-.+..
T Consensus 968 -lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~l 1035 (1265)
T KOG1920|consen 968 -LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVAL 1035 (1265)
T ss_pred -HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHH
Confidence 123566667777777777776665321 1211 1144555666666666666666655432 2223344
Q ss_pred HHcCCCHHHHHHHHHH
Q 038801 448 SITSQDFQSAFSLFRD 463 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~ 463 (662)
||+...+++|..+-..
T Consensus 1036 l~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1036 LCKAKEWEEALRVASK 1051 (1265)
T ss_pred HhhHhHHHHHHHHHHh
Confidence 5555566666655443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.8 Score=39.18 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=9.1
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m 394 (662)
+..++...|+++.|..++..+
T Consensus 174 la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.71 Score=40.50 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH- 586 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~- 586 (662)
..+..+..-|++.|+.++|.+.|.++.+....+.. ..+-.+|......+++..+....+++....+. |-.++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~----~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK----GGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----cchHHHH
Confidence 46888999999999999999999999987666655 46778888888899999999999988855442 222222
Q ss_pred ---HHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 587 ---NLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 587 ---~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
..|..| ++...|++.+|-+.|-+.
T Consensus 113 nrlk~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 113 NRLKVYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHH--HHHHhchHHHHHHHHHcc
Confidence 222222 345688999998888665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.8 Score=45.69 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND------QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...|+.+..+|.+.|++++|+..|++.+ ..+. .+|..+..+|...|+.++|++.+++..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL----eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL----ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666666666666666554 5322 125556666666666666666666665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.65 E-value=7.1 Score=37.56 Aligned_cols=156 Identities=8% Similarity=0.037 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--CC----CHHHHHHHHHHHHHcCC---CCCcccHHHHHHHHHhcCC-
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASIT--SQ----DFQSAFSLFRDMREARI---YDLKGSYLTIMTGLMENHR- 488 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~- 488 (662)
+++...+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677888888877776665543322222 22 35567788888887642 3334455555443 2222
Q ss_pred ---HHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038801 489 ---PELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKAGR--LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYF 561 (662)
Q Consensus 489 ---~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 561 (662)
.+.++.+++.+.+. |...+ ......++........ ..++.++++.+.+.|+++....|..+.-...-.+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 35667777777763 44332 2333333332222111 4578899999999999988877776654444444443
Q ss_pred HHHHHHHHHHHhhccc
Q 038801 562 SVLMMWHEIKRKISTD 577 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~ 577 (662)
+...-+.++.+.+...
T Consensus 235 ~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 235 KIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 5555556665555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.3 Score=43.12 Aligned_cols=138 Identities=7% Similarity=-0.003 Sum_probs=86.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC
Q 038801 445 IEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 524 (662)
...|.+.|++..|..-|++.+..=- +...-+.++.... .. .-..++..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~-~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKA-EA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHH-HH--------HHHHHhhHHHHHHHhhhh
Confidence 4678888888888888887664310 0000011111111 11 112356677778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH-HHHHHHHHccCchH
Q 038801 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV-DAFLYALVKGGFFD 603 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~ 603 (662)
+.+|++.-.+.+..+ .+|+...--=..+|...|+++.|...|+++. .+.|+.... +.|+..-.+..+..
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~---------k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKAL---------KLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHH---------HhCCCcHHHHHHHHHHHHHHHHHH
Confidence 888888888888764 4566666666788888899999999998888 566766433 44444444444433
Q ss_pred H-HHHHHHHHHh
Q 038801 604 A-VMQVVEKSQE 614 (662)
Q Consensus 604 ~-A~~~~~~m~~ 614 (662)
+ ..++|..|..
T Consensus 343 ~kekk~y~~mF~ 354 (397)
T KOG0543|consen 343 EKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhh
Confidence 3 4677777743
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=3.1 Score=35.38 Aligned_cols=138 Identities=14% Similarity=-0.030 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
-....|...++ +...+..++|+.-|.++.+.|...-......-...+....|+...|...|+++... ...|-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-------t~~P~ 128 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-------TSIPQ 128 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-------CCCcc
Confidence 34456655554 56778899999999999998765544444444556667788999999999988651 22232
Q ss_pred HH-HHHHHHH--HHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038801 220 IY-ACNAALE--GCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG 286 (662)
Q Consensus 220 ~~-~~~~ll~--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 286 (662)
.. -...|=. .+..+ |.++......+-+-..|-+.-...-..|--+.-+.|++.+|.+.|..+....
T Consensus 129 ~~rd~ARlraa~lLvD~-gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 129 IGRDLARLRAAYLLVDN-GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred hhhHHHHHHHHHHHhcc-ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 22 0111111 23444 7777777776666544322222222334344456778888887777766543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.52 E-value=2.5 Score=35.04 Aligned_cols=58 Identities=9% Similarity=0.176 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+.|++++|.+.|+.+..+++- . .-....--.|+.++.+.|++++|...+++..+..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~---g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPF---G--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCC---C--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 346666666666666543321 0 111233344555666666666666666666555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.48 E-value=3.9 Score=39.28 Aligned_cols=169 Identities=12% Similarity=0.036 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK---THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-----NDQTY 547 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~ 547 (662)
|..+..++-+..+..+++.+-+.-..-.|..|. ....-+|..++.-.+.++++++-|+....--..- ....+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444444555554444433344331 1234456677777788899999888777532111 12478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-----HHHHHHHHHHHccCchHHHHHHHHHHH----hCCCC
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-----NLVDAFLYALVKGGFFDAVMQVVEKSQ----EMKVF 618 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~ 618 (662)
..|...|....|+++|+-+..+..+... ..++.-=. -....+..++-..|++-.|.+..++.. +.|-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~---s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVN---SYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHH---hcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 8888889999999999888877764433 22221111 233445557778888888888887764 34544
Q ss_pred CCHHhHH---HHHHHHhhhhhhhHHHHHHHHh
Q 038801 619 VDKWKYK---QAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 619 p~~~~~~---~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+.--..+ ...++..||.|.+-..++++..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 4333333 4455666788887666665544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.94 Score=42.49 Aligned_cols=83 Identities=18% Similarity=0.350 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 589 (662)
.++..++..+...|+.+.+...++++.... .-|...|..+|.+|.+.|+...|+..|+++.....+ +.|+.|...+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e--dlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE--ELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh--hcCCCccHHHH
Confidence 367888899999999999999999999753 336689999999999999999999999999865443 67899988777
Q ss_pred HHHHHH
Q 038801 590 DAFLYA 595 (662)
Q Consensus 590 ~~l~~~ 595 (662)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 766555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.41 E-value=4.6 Score=34.69 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCC
Q 038801 242 KVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGG 321 (662)
Q Consensus 242 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 321 (662)
+..+.+.+.|+.|+...|..+|..+.+.|.+....+ +...++-+|.......+-.+. +....+.++=.+|+++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 344455667788888888888888888887664443 335555555444443332222 23344555555666552
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038801 322 NMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397 (662)
Q Consensus 322 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 397 (662)
...+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+|+...++
T Consensus 89 --------~~~~~~iievLL~~g~vl~ALr~ar~~~~-------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 --------GTAYEEIIEVLLSKGQVLEALRYARQYHK-------VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --------hhhHHHHHHHHHhCCCHHHHHHHHHHcCC-------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12456677778888888888888766421 12223345666666666666555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.6 Score=33.24 Aligned_cols=134 Identities=10% Similarity=0.103 Sum_probs=61.4
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH---HHHHHHHHh
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG---FGIISACVN 380 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~---~~ll~~~~~ 380 (662)
.|.+++..+++.+...+. +..-||-+|.-....-+-+-..+.++..-+. .|...+ -.++.++..
T Consensus 15 dG~V~qGveii~k~v~Ss-------ni~E~NWvICNiiDaa~C~yvv~~LdsIGki------FDis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS-------NIKEYNWVICNIIDAADCDYVVETLDSIGKI------FDISKCGNLKRVIECYAK 81 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS--------HHHHTHHHHHHHHH--HHHHHHHHHHHGGG------S-GGG-S-THHHHHHHHH
T ss_pred hchHHHHHHHHHHHcCcC-------CccccceeeeecchhhchhHHHHHHHHHhhh------cCchhhcchHHHHHHHHH
Confidence 455555556555555543 4445555555555555555555555554321 111111 123333333
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (662)
.|... ......+..+.+.|+-|.-.+++.++.+. -+++....-.+..+|.+.|+..++.++
T Consensus 82 ~n~~s------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 82 RNKLS------------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp TT---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcchH------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 33221 22333445555666666666666666542 245556666666666666666666666
Q ss_pred HHHHHHcCC
Q 038801 461 FRDMREARI 469 (662)
Q Consensus 461 ~~~m~~~~~ 469 (662)
+++..++|+
T Consensus 143 l~~ACekG~ 151 (161)
T PF09205_consen 143 LKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhch
Confidence 666666664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.30 E-value=10 Score=38.41 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+..+.-+.|+.++|.+.+++|.+..-.-| ......|+.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44444556666666666666654311111 1345556666666666666666665543
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.6 Score=39.87 Aligned_cols=154 Identities=10% Similarity=-0.068 Sum_probs=101.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--CCCcHHhHHHHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEF-G--FSSQMVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~-g--~~~~~~~~~~li~~~~~~g~~~~A~ 311 (662)
|+..+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...++.+... + ++....+-..+.-++..+|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 8888888888888764 4667777877778899999998888888887654 2 2222333334445567889999998
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 391 (662)
+.-.+.++-... |.-.-.+....+--+|+..++.++..+-...-..+-..-..-|....-.+...+.++.|.++|
T Consensus 196 k~A~ralqiN~~-----D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 196 KQADRALQINRF-----DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHhhccCCCc-----chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 876666655322 555566777777788999999888765322111111111223444444455567788888887
Q ss_pred HHH
Q 038801 392 DEM 394 (662)
Q Consensus 392 ~~m 394 (662)
+.=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.3 Score=37.47 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=63.3
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH-HHHHHHHccCchHHHHHHHHHHHhCCCCCCH
Q 038801 546 TYLSLINGY---VTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD-AFLYALVKGGFFDAVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 546 ~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 621 (662)
+.+.||..+ ...++.+++..+++.++ -++|...... .-...+.+.|++.+|..+|+++.+..+.-..
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALr---------vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALR---------VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHH---------HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 444444433 45689999999999998 4566553222 2234467899999999999998777665445
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHhhH
Q 038801 622 WKYKQAFMENHKKLKVAKLRKRNFKKME 649 (662)
Q Consensus 622 ~~~~~~~~~~~~~~~~a~~~~~~~~~l~ 649 (662)
...++..|-...+-..-+...+.+++-.
T Consensus 80 ~kALlA~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 80 AKALLALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 5667777776655555555555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.66 Score=43.26 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=60.5
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch
Q 038801 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR---IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT 509 (662)
Q Consensus 433 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 509 (662)
|......+...++..-....+++.+..++-+++... ..++. +-..+++.|. .-+.++++-++..-+. +|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcch-hccccch
Confidence 444455555666655555677777777777766542 12222 2222333333 3344566666555444 4777777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777766665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.87 E-value=9 Score=38.81 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.+...+-+.|+.++|++.+.++.+..+..-+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344455556666666666666655433333344556667777777777777777766543
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.76 E-value=4.5 Score=33.54 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=35.6
Q ss_pred HHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACG--CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
..+.|++++|.+.|+.+..+- -+-.....-.++.+|.+.|++++|...+++..+......-+.|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344556666666666555541 011233444455555566666666666665555533222344444444444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.22 Score=46.80 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHH
Q 038801 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAF 628 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~ 628 (662)
.+-|.+.|.+++|+..|.... .+.| +.+++..-..+|.+..++..|..=.......+-. ...+..-..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 345788999999999998877 5667 7788888888999999999888777766544321 2234443445
Q ss_pred HHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 629 MENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 629 ~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
-...|++++|++=++..++|||...
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccH
Confidence 5567999999999999999999643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.58 E-value=17 Score=38.85 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
+.+--+.-+...|+..+|.++-.+.+ -||-..|..=+.+++..+++++-.++-+.++ ++.-|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------------sPIGy~ 748 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------------SPIGYL 748 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------------CCCCch
Confidence 44445555556666666666666555 4666666666666666666666555443333 133345
Q ss_pred HHHHHHHccCchHHHHHHHHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m 612 (662)
-++.+|.+.|+.+||.+++-++
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhcc
Confidence 5566666666666666666554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.46 E-value=8.4 Score=35.20 Aligned_cols=199 Identities=15% Similarity=0.074 Sum_probs=112.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNAC-GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE- 446 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~- 446 (662)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455566666667777777666666542 223444556666666666677777777777766543222 122222222
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC
Q 038801 447 ASITSQDFQSAFSLFRDMREARI--YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 524 (662)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.+........ ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHccc
Confidence 56677777777777777644211 0122333333344556667777777777766532111 24456666666777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 525 LEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
++.|...+...... .|+ ...+..+...+...+..+++...+++..
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777653 333 3334444444445556777777666666
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.25 E-value=18 Score=38.60 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 405 VYVPTLKAYCKEH-----RTAEATQLVMDISSSGLQLDVGNYDALIEASIT-SQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 405 ~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
....+..+|.+.. +.+.|..+|....+.|. |+....-..+.-... ..+...|.++|....+.|..+. +-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A---~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA---IYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH---HHH
Confidence 3444555555432 45556666666665542 233222111111111 1345667777766666664221 111
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 479 IMTGLM----ENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 479 ll~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
+...|. -..+...|..++++..+. + .|....-...+..+.. ++.+.+.-.+..+.+.|.+--...-..++...
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 111111 122456666777666665 2 2221111122223333 66666666666666554332111111111111
Q ss_pred ---Hh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc----CchHHHHHHHHHHHhCCCCCCHHh
Q 038801 555 ---VT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG----GFFDAVMQVVEKSQEMKVFVDKWK 623 (662)
Q Consensus 555 ---~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~ 623 (662)
.. ..+...+...|.... ..| +......|...|... .+++.|...+....+.+ ..-.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~a~-------~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~ 509 (552)
T KOG1550|consen 443 EEDLFSRGVISTLERAFSLYSRAA-------AQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQAL 509 (552)
T ss_pred cccccccccccchhHHHHHHHHHH-------hcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHH
Confidence 11 234555666666655 333 223334444444332 34777888887777666 3445
Q ss_pred HHHHHHHHhhh----hhhhHHHHHHHHhhHHHH
Q 038801 624 YKQAFMENHKK----LKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 624 ~~~~~~~~~~~----~~~a~~~~~~~~~l~p~~ 652 (662)
..++++..+|. +.+|.+.++++.+.+...
T Consensus 510 ~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 510 FNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 55777777653 455666667666655443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.27 Score=31.38 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHh
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWK 623 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~ 623 (662)
++..+..++.+.|++++|.++++++.+..+. |+.|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 5667788888999999999999988877664 33443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.11 E-value=7.4 Score=34.08 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS-----LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
...+...|++++|..-++.... .|....+.. |.+.....|.+++|+.+++... ..+. ......
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w--~~~~~e 163 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESW--AAIVAE 163 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccH--HHHHHH
Confidence 4567788999999999998875 333333333 4455667899999999998777 3332 334455
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCC
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFV 619 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 619 (662)
.-.+++...|+-++|+.-|++..+.+..|
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 56778999999999999999998876443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.76 E-value=7 Score=33.16 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc
Q 038801 521 KAGRLEDAKRTLRRMIFLQFEPNDQTYL-SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG 599 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 599 (662)
+.++.+++..++..+.- +.|...... .-...+...|++.+|+.+|+++. .. .|.......|+..|...
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~-------~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE-------ER--APGFPYAKALLALCLYA 90 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh-------cc--CCCChHHHHHHHHHHHH
Confidence 45566666666666664 245442211 11223355666666666666665 22 23333333444444433
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhH
Q 038801 600 GFFDAVMQVVEKSQEMKVFVDKWKY 624 (662)
Q Consensus 600 g~~~~A~~~~~~m~~~~~~p~~~~~ 624 (662)
.+-.+=..+-+++.+.+..|+....
T Consensus 91 ~~D~~Wr~~A~evle~~~d~~a~~L 115 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADPDARAL 115 (160)
T ss_pred cCChHHHHHHHHHHhcCCChHHHHH
Confidence 3323333333444455555544333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.31 E-value=8.8 Score=33.02 Aligned_cols=134 Identities=7% Similarity=-0.010 Sum_probs=84.0
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcC-CcHHHHHHHHHHHHH
Q 038801 128 SVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKN-SNFVAFLKVFEECCR 206 (662)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 206 (662)
.+.+.+...+.+++...|..++..+.+.|++. .+..++..+..+++......|+..-.+. .-..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 44444557778888889999999999888744 4556666777777777666565543221 12334555555542
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038801 207 IALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEF 285 (662)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 285 (662)
..+..++..+... |++-+|+++.+.... .+......++.+..+.+|...-..+++-..+.
T Consensus 90 --------------~~~~~iievLL~~-g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 --------------TAYEEIIEVLLSK-GQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --------------hhHHHHHHHHHhC-CCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1455666777776 999999988877532 23333455667777777765555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.4 Score=35.20 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=57.8
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccH---HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEH---NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENH 632 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~ 632 (662)
..++.+++..+++.|+ -+.|+. .++.. ..+.+.|++++|..+++...+.+.....-..++..|-.-
T Consensus 22 ~~~d~~D~e~lLdALr---------vLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---------VLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred hcCCHHHHHHHHHHHH---------HhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 3799999999999999 455554 34433 447799999999999999988876655566667777665
Q ss_pred hhhhhhHHHHHHHHhh
Q 038801 633 KKLKVAKLRKRNFKKM 648 (662)
Q Consensus 633 ~~~~~a~~~~~~~~~l 648 (662)
..-..-+......++-
T Consensus 91 l~Dp~Wr~~A~~~le~ 106 (153)
T TIGR02561 91 KGDAEWHVHADEVLAR 106 (153)
T ss_pred cCChHHHHHHHHHHHh
Confidence 4444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.4 Score=38.30 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=46.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHH--hcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN---GYV--TAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDA 591 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~---~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~ 591 (662)
-+...|++++|..-|.+.++. +.+...--.+++- +.+ +.+.++.|++-..+.+ .+.|+. .....
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---------el~pty~kAl~R 173 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---------ELNPTYEKALER 173 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---------hcCchhHHHHHH
Confidence 355677777777777777764 2222222222211 111 2355555555444444 233322 22222
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
-..+|.+...+++|++=|+++.+..+.
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 234566777777777777777666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.74 E-value=23 Score=36.84 Aligned_cols=417 Identities=10% Similarity=-0.069 Sum_probs=212.8
Q ss_pred ChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccH
Q 038801 141 DFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
+...+..++.---...+.+.+..+++.++.. .|-...++......=.+.|..+.+.++|++... ++.-++
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--------aip~Sv 113 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--------AIPLSV 113 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------hhhhHH
Confidence 3334444444333334444555566666542 355555555555555577788888888888765 466777
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhc-CCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVL-GVRP-NESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
..|...+..+....|+.+...+.|+..... |..- +...|-..|.--...+++.....+++..++.. ...|+..-
T Consensus 114 dlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f 189 (577)
T KOG1258|consen 114 DLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHF 189 (577)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHH
Confidence 777777776666557777777777776543 3221 12234455555556677777777777776642 22233222
Q ss_pred HHHHh---c------CChhhHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCcccc
Q 038801 299 SGYVK---L------GNLESASRTILLCLGGG-NMEQSDFSKETYCEVVKGFLQ-NGNVKGLANLIIEAQKLEPSGIVVD 367 (662)
Q Consensus 299 ~~~~~---~------g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~ 367 (662)
.-|.+ . ...+++.++ ......+ ......+....+..-+.--.. .+..+++.....+.
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l-~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------- 257 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQL-RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------- 257 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHH-hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-----------
Confidence 22211 1 122222222 1111100 000000111111111111100 00111111111100
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 368 RSVGFGIISACVNLGLSDKAHSILDEMNACG-------CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
....-.++-..-...+....|+.-+++- ..++..+|..-+.--.+.|+.+.+.-+|+...-- +..=...
T Consensus 258 ---~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~ef 333 (577)
T KOG1258|consen 258 ---VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEF 333 (577)
T ss_pred ---HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHH
Confidence 0001111111122222333333333321 1335578888888888999999999999887632 1111233
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch-hhHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT-HDWNSIIHAF 519 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~ 519 (662)
|-..+.-....|+.+-|..++....+--++-...+-..-....-..|+.+.|..+++.+..+. |+. ..-..-+...
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e 410 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWE 410 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHH
Confidence 444444444458888888887776665443332222222222344679999999999998863 442 2222234455
Q ss_pred HhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHH
Q 038801 520 CKAGRLEDAK---RTLRRMIFLQFEPNDQTYLSLINGYV-----TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDA 591 (662)
Q Consensus 520 ~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 591 (662)
.+.|+.+.+. +++.........+ .+.+.+.--++ -.++.+.|..++.++.. -..++...|..
T Consensus 411 ~r~~~~~~~~~~~~l~s~~~~~~~~~--~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--------~~~~~k~~~~~ 480 (577)
T KOG1258|consen 411 RRKGNLEDANYKNELYSSIYEGKENN--GILEKLYVKFARLRYKIREDADLARIILLEAND--------ILPDCKVLYLE 480 (577)
T ss_pred HHhcchhhhhHHHHHHHHhcccccCc--chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--------cCCccHHHHHH
Confidence 6788888887 4444444322222 22222222222 25899999999999992 33455678888
Q ss_pred HHHHHHccC
Q 038801 592 FLYALVKGG 600 (662)
Q Consensus 592 l~~~~~~~g 600 (662)
++..+...+
T Consensus 481 ~~~~~~~~~ 489 (577)
T KOG1258|consen 481 LIRFELIQP 489 (577)
T ss_pred HHHHHHhCC
Confidence 888766544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.31 E-value=3 Score=39.25 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCChhhHHHHH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS-----SGLQLDVGNYDALI 445 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li 445 (662)
+..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3345555555566666666666666553 44556666666666666666666666665543 35555554444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.19 E-value=17 Score=34.32 Aligned_cols=48 Identities=10% Similarity=-0.076 Sum_probs=26.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 038801 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRT 313 (662)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (662)
.....|+..+|..+|+...... +-+...--.+..+|...|+.+.|..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHH
Confidence 3445566666666666555543 12234444555666666666666655
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.14 E-value=5.2 Score=37.68 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV--EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 546 (662)
.+....+...++..-....++++++.++-++...... .|+.. -...++.+ -.=+.++++.++..=+.-|+.||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 3555566666666666677788888887777665322 11111 11222222 22356677777777777788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
++.+|+.+.+.+++.+|..+.-.|.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888888888888777777766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.78 Score=27.63 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRR 534 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~ 534 (662)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.61 E-value=35 Score=37.14 Aligned_cols=52 Identities=6% Similarity=0.030 Sum_probs=33.8
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNF 645 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~ 645 (662)
++..+.+..+.+++..+.+...+. .|..|...+.+....+.++.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~--~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE--DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc--ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 455566777777777777776433 5778888888887777555544444333
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.14 E-value=37 Score=36.89 Aligned_cols=424 Identities=12% Similarity=0.009 Sum_probs=200.8
Q ss_pred hHHHHHHHHHHH-hcCCchhHHHHHHHHHhcCCCCCcc----cHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCC
Q 038801 142 FQTVHTLLGSMR-NANTAAPAFALVKCMFKNRYFMPFE----LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFM 216 (662)
Q Consensus 142 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 216 (662)
..++..+...+. ...+++.|...+++.......+... ....+++..+.+.+... |.+.+++..+.... .+.
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~---~~~ 134 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET---YGH 134 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc---cCc
Confidence 344555666655 6677888888888765432221111 12345666666555544 88888876653110 111
Q ss_pred CccHHHHHHH-HHHHhccCCChhHHHHHHHHHHhcC---CCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHhcC----
Q 038801 217 KPNIYACNAA-LEGCCYGLQSVSDAEKVIETMSVLG---VRPNESSFGFLAYLYA--LKGLQEKIVELESLMNEFG---- 286 (662)
Q Consensus 217 ~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~~~~~g---- 286 (662)
.+=...|..+ +..+... +++..|++.++.+...- ..|-...+..++.+.. +.+..+++.+..+.+....
T Consensus 135 ~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred hhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 2223344444 3333343 68888888888875432 2334444444554444 3455566666666553321
Q ss_pred -----CCCcHHhHHHHHHHHH--hcCChhhHHHH---HHHHHcCCCCCC----------C--C-----------CCH---
Q 038801 287 -----FSSQMVFYSSLISGYV--KLGNLESASRT---ILLCLGGGNMEQ----------S--D-----------FSK--- 330 (662)
Q Consensus 287 -----~~~~~~~~~~li~~~~--~~g~~~~A~~~---~~~~~~~~~~~~----------~--~-----------p~~--- 330 (662)
..|-..++..+++.++ ..|+++.+... +.+.++...... + . +..
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~w 293 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSW 293 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEee
Confidence 1234556666666544 44554444333 222222211110 0 0 111
Q ss_pred ------HHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCc-----cccc--------chHHHH---------HHHHHh
Q 038801 331 ------ETYCEVVKG--FLQNGNVKGLANLIIEAQKLEPSGI-----VVDR--------SVGFGI---------ISACVN 380 (662)
Q Consensus 331 ------~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~--------~~~~~l---------l~~~~~ 380 (662)
.....++.+ .+..+..++|.+++++..++..+.. .+.. ..+... +-..+-
T Consensus 294 l~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~ 373 (608)
T PF10345_consen 294 LPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFI 373 (608)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333 3345555577666666543221111 1111 111111 122234
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC-----hhhHHHHH--HHHHHcCCHHHHHHHHH--------HHHhCCCCCChhhHHHH
Q 038801 381 LGLSDKAHSILDEMNACGC-SVG-----LGVYVPTL--KAYCKEHRTAEATQLVM--------DISSSGLQLDVGNYDAL 444 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~-~~~-----~~~~~~li--~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~l 444 (662)
.+++..+....++|.+... .|+ ...+...+ -.+...|+++.|+..|. .....+...+...+..+
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
Confidence 6889899999998876421 111 12222222 23445799999999997 45555555454444332
Q ss_pred HH--HH--HcCCCHHH--HHHHHHHHHHc-CCCCC--cc-cHHHHHHHHHhcCC--HHHHHHHHHHHhhCC-----CCcc
Q 038801 445 IE--AS--ITSQDFQS--AFSLFRDMREA-RIYDL--KG-SYLTIMTGLMENHR--PELMAAFLDEVVEDP-----RVEV 507 (662)
Q Consensus 445 i~--~~--~~~g~~~~--A~~~~~~m~~~-~~~~~--~~-~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~-----~~~p 507 (662)
=. .+ ......++ +.++++.+... .-.++ .. .+..++.++..... ..++...+.+..+.. ....
T Consensus 454 Nl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 454 NLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQL 533 (608)
T ss_pred HHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchH
Confidence 11 11 12222233 66666665542 11221 12 23333333322111 224444333322211 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH--HHHHH-----HHHHHHhcCCHHHHHHHHHHHH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPND--QTYLS-----LINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~~~~~-----li~~~~~~~~~~~a~~~~~~m~ 571 (662)
-..+++.|...+. .|+.++..+........ .-.||. ..|.. +...+-..|+.++|.....+..
T Consensus 534 ~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 534 LAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1223444444444 68877766665543321 112333 45633 3444666799999998887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.35 Score=30.82 Aligned_cols=35 Identities=9% Similarity=-0.063 Sum_probs=30.8
Q ss_pred CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 619 VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 619 p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
|+.+..+...+...|+.+.|++.++++++.+|.+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56777788888999999999999999999999754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.09 E-value=9.4 Score=33.51 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHH
Q 038801 532 LRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 532 ~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
++...++.++-++ ..+..+...|++.|+.++|++.+.+++ +....+.. ..+-.+++...-.|++..+...
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-------~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRAR-------DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-------hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333344344344 478899999999999999999999999 55655554 5677888999999999999999
Q ss_pred HHHHHhCCCC
Q 038801 609 VEKSQEMKVF 618 (662)
Q Consensus 609 ~~~m~~~~~~ 618 (662)
+.+....--.
T Consensus 96 i~ka~~~~~~ 105 (177)
T PF10602_consen 96 IEKAESLIEK 105 (177)
T ss_pred HHHHHHHHhc
Confidence 9887654333
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.07 E-value=37 Score=36.80 Aligned_cols=63 Identities=16% Similarity=-0.015 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-------HHHHHHHHHHHHhcC
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL-------QEKIVELESLMNEFG 286 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~a~~~~~~~~~~g 286 (662)
..| .+|--+.+. |++++|.++..+... +.......+...+..+....+ -++...-|+...+..
T Consensus 113 p~W-a~Iyy~LR~-G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIW-ALIYYCLRC-GDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHH-HHHHHHHTT-T-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccH-HHHHHHHhc-CCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 345 555667777 999999999966543 345666778888888876532 235555666665554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.03 E-value=14 Score=31.73 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh-hHHHHH--HHHHhcC
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKG-SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH-DWNSII--HAFCKAG 523 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li--~~~~~~g 523 (662)
+++.+..++|+.-|.++.+.|...-+. ..........+.|+...|...|+++..+..+ |-+. -...|= ..+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 355667777777777777766421110 0011112344455555555555555554222 2111 111111 1223444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 524 RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.++....-.+-+...+-.--...-..|.-+-.+.|++.+|...|+.+.
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 454444444444332211122233444444444555555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.98 Score=27.19 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999966
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.38 E-value=26 Score=34.03 Aligned_cols=133 Identities=9% Similarity=-0.008 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC----CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVED----PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF----LQFEPNDQTYL 548 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~ 548 (662)
.++..++...+.++.+.+.|+...+- ........+|..|...|.+..|+++|.-...+..+ .++.--...|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34455666666677777777665431 11122345678888888888888888766655543 22221112333
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 549 S-----LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 549 ~-----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
. +.-++...|..-+|.+.-++..+..- ..|-++-. .....+.+.|-..|+.+.|+.-++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal---~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLAL---QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3 23345556777777777776653222 23433332 45566677777888888888777664
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.20 E-value=41 Score=36.25 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDIS 430 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~ 430 (662)
-..|+..|...+++.+|..++-..+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 3347778888888888888776665
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.99 E-value=24 Score=33.18 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
+++.....|..+|.+.+|.++-++.+... +.+...|-.|+..+...||--+|.+-++.+.+.+.. ..|+..|..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vlea--elgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA--ELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH--HhCCCcchhHHH
Confidence 45666778889999999999999998753 446678889999999999988888888887765554 457766655443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.94 E-value=47 Score=36.55 Aligned_cols=230 Identities=13% Similarity=0.026 Sum_probs=119.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcH-------HhHHHHHH-HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Q 038801 266 YALKGLQEKIVELESLMNEFGFSSQM-------VFYSSLIS-GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337 (662)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li 337 (662)
.....++++|..++.++...--.|+. ..+++|-. .....|++++|.++-...+..-......+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567777777777776554222221 12222221 12345788888888777776654444555677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHH-----HHHHHhcCCh--HHHHHHHHHHHHC-----CC-CCChh
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI-----ISACVNLGLS--DKAHSILDEMNAC-----GC-SVGLG 404 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~--~~a~~~~~~m~~~-----~~-~~~~~ 404 (662)
.+..-.|++++|..+..+..++ .-..+...+... ...+...|.. ++....|...... .. .+-..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~---a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM---ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH---HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 8888899999998888776652 122233333321 1233445632 2222233322211 10 11224
Q ss_pred hHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccc-HHH--
Q 038801 405 VYVPTLKAYCKE-HRTAEATQLVMDISSSGLQLDVGNY--DALIEASITSQDFQSAFSLFRDMREARIYDLKGS-YLT-- 478 (662)
Q Consensus 405 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~-- 478 (662)
++..+..++.+. +...++..-+.--......|-...+ ..|+......|+.++|...+.++......+.... |..
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 455555555551 1122222222222222222222222 3677888889999999999999886544332111 211
Q ss_pred -HH--HHHHhcCCHHHHHHHHHH
Q 038801 479 -IM--TGLMENHRPELMAAFLDE 498 (662)
Q Consensus 479 -ll--~~~~~~~~~~~a~~~~~~ 498 (662)
.+ ......|+...+..++.+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 11 123446777777666655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.79 E-value=0.019 Score=48.66 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQD 453 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 453 (662)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4444555555555555555555444344455555555555555444444444431 111222334444444555
Q ss_pred HHHHHHHHHH
Q 038801 454 FQSAFSLFRD 463 (662)
Q Consensus 454 ~~~A~~~~~~ 463 (662)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5554444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=54 Score=35.70 Aligned_cols=335 Identities=8% Similarity=-0.001 Sum_probs=167.9
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCcHHhHHHH
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG-FSSQMVFYSSL 297 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l 297 (662)
+...|.....++.+ |++..+.++-..+...-+ ..-..|..+...+. ....++...++ .+.. .+.....-..-
T Consensus 33 ~r~~f~~A~~a~~~--g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl---~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDN--RQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFI---RANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHH---HHCCCCchHHHHHHHH
Confidence 34566677776654 788888777777643211 11112222211111 12344333333 3332 22223334444
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
+..+.+.+++..... |.. . ...+...-.....+....|+.++|......+=. .|..
T Consensus 106 l~~La~~~~w~~~~~-~~~---~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~---~g~~------------ 161 (644)
T PRK11619 106 VNELARREDWRGLLA-FSP---E-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL---TGKS------------ 161 (644)
T ss_pred HHHHHHccCHHHHHH-hcC---C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCC------------
Confidence 555666667666555 211 1 112445555666677777777666554444311 1111
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQS 456 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 456 (662)
..+.+..+|+...+.|...+..++.- +......|+...|..+...+. ++ ......++..+.+ ...
T Consensus 162 -----~p~~cd~l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~~---p~~ 227 (644)
T PRK11619 162 -----LPNACDKLFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQND---PNT 227 (644)
T ss_pred -----CChHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHHC---HHH
Confidence 12334444555554443333333333 344455667776666665541 12 2223333333333 222
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhcCCHHHHHHHH
Q 038801 457 AFSLFRDMREARIYDLKGSYLTIMTGLM--ENHRPELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKAGRLEDAKRTL 532 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 532 (662)
+..++.. ++++...-..++.++. ...+.+.|...+..+.......+. ..++..+....+..+...+|...+
T Consensus 228 ~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~ 302 (644)
T PRK11619 228 VETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWR 302 (644)
T ss_pred HHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 2222221 1222212222222222 244568899999887665454433 234455544444443356777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 533 RRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 533 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
...... ..|.....--+..-...++++.+...+..|.. .. .-...-.--+.+++...|+.++|..+|+.+
T Consensus 303 ~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~-------~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 303 DDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPM-------EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred Hhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCH-------hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 765533 22444455555555688999998888888752 11 112333344677777799999999999997
Q ss_pred H
Q 038801 613 Q 613 (662)
Q Consensus 613 ~ 613 (662)
.
T Consensus 373 a 373 (644)
T PRK11619 373 M 373 (644)
T ss_pred h
Confidence 4
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.02 E-value=12 Score=39.86 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHcCCC
Q 038801 387 AHSILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVG----------NYDALIEASITSQD 453 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----------~~~~li~~~~~~g~ 453 (662)
-..++++|..+--.|++ .+...++-.|-...+++...++.+.++.. ||.. .|.-.+.---+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 34455666554333332 34444555555666677777777776653 3221 12222222233456
Q ss_pred HHHHHHHHHHHHHc
Q 038801 454 FQSAFSLFRDMREA 467 (662)
Q Consensus 454 ~~~A~~~~~~m~~~ 467 (662)
-++|+...-.|.+.
T Consensus 259 RakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.9 Score=25.28 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
+|..+..++...|++++|+..++++.+.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45666667777777777777777765543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.16 E-value=34 Score=32.20 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=24.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
.+.|..+|.+.+|..+.+...... ..+...|-.+|..+...|+--.|.+-++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344444555555555544444331 124444444555555555444444444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.64 E-value=55 Score=34.21 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCC-CccHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFM-KPNIYACNA 225 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 225 (662)
.....=.+.|..+.+.++|++-+.. ..-+...+...+...+...|+.+...+.|+...... |. -.+...|..
T Consensus 84 kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~v------G~dF~S~~lWdk 156 (577)
T KOG1258|consen 84 KFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYV------GLDFLSDPLWDK 156 (577)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc------ccchhccHHHHH
Confidence 3333345677788888888887763 223334445555555666778888888888876541 11 234456777
Q ss_pred HHHHHhccCCChhHHHHHHHHHHh
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSV 249 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~ 249 (662)
.|.--..+ +++.....+|+...+
T Consensus 157 yie~en~q-ks~k~v~~iyeRile 179 (577)
T KOG1258|consen 157 YIEFENGQ-KSWKRVANIYERILE 179 (577)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHh
Confidence 77777776 888888888888875
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.09 E-value=47 Score=32.99 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP---NDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
...+|..+...+.+.|.++.|...+.++...+... +....-.-.+..-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777788877777777777533111 122222334445556777777777777664
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.02 E-value=2.4 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=18.4
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.+..+..++.+.|++++|++.+++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666777777777777777765543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.77 E-value=7.6 Score=29.49 Aligned_cols=63 Identities=5% Similarity=-0.011 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 236 SVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 236 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
+.-++.+-++.+....+.|+.....+.+++|.+.+|+..|.++++-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 334555666666777788888888888899999999999998888776431 124446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.76 E-value=4.1 Score=23.84 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKL 359 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 359 (662)
.+|..+..++...|++++|++.|++..++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666666666777777777777666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.33 E-value=11 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh-CCCCCCHHhHHH
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE-MKVFVDKWKYKQ 626 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ 626 (662)
|.-++.+-++.+. ..++.|++.+..+.++||-|-.++..|+++++-.+. -+....+|.+.+
T Consensus 22 D~we~rr~mN~l~-------~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLF-------GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHh-------ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 4556777777888 788999999999999999999999999999998763 333334555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.29 E-value=69 Score=34.30 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHH--HH-HHHcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHcCC-
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTL--KA-YCKEHRTAEATQLVMDISS-------SGLQLDVGNYDALIEASITSQ- 452 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 452 (662)
...+.++++...+.|. ......-..+ .+ +....+.+.|..+|..+.+ .| +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4556677777766652 2222222222 22 3456788888888888766 54 4445666777777643
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH--hcCCH
Q 038801 453 ----DFQSAFSLFRDMREARIYDLKGSYLTIMTGLME-NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC--KAGRL 525 (662)
Q Consensus 453 ----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~ 525 (662)
+.+.|..+|.+..+.|.+.. ..+...+..... ..+...|.++|....+. |.. ....+-+++.... ...+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a-~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDA-QYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchH-HHHHHHHHHcCCccccHHHHHHHHHHHHHc-CCh-HHHHHHHHHHHhCCCcCCCH
Confidence 67789999999999885332 222222111111 23568999999998875 432 2222222222111 33478
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 526 EDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 526 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+.|..++++..+.| .|-..--...+..+.. ++++.+...+..+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 99999999999887 4333222233334444 77777776666666
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.14 E-value=10 Score=33.50 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038801 274 KIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGL 349 (662)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 349 (662)
.|.+.|-.+...+.--+....-+|...|. ..+.+++..++.+.++-... +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443344444444444333 33445555555554443221 1233444444444444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.96 E-value=27 Score=29.28 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
.++.+++..+++.+.--.+-.+...++...+ +...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5566666666666654333344445555555 45677788888888777764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.70 E-value=44 Score=31.61 Aligned_cols=142 Identities=8% Similarity=0.031 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 453 DFQSAFSLFRDMRE-ARIYDLKGSYLTIMTGLMENH--RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 453 ~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
.+.+|+.+|+.... ..+--|..+...++....... ....-.++.+-+....+-.++..+-..++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 234445556666666665522 233344555555555566777788899999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 530 RTLRRMIFL-QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 530 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
++++..... +..-|...|..+|+.....|+..-..++.++-. +--....++..+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh--LLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH--LLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC--eEEeeecCCcCCHHHHHHHHHHH
Confidence 999887765 455577899999999999999776666655321 00000445555555555444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.69 E-value=78 Score=34.47 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=117.4
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHH-hcCCCCCcc--cHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCcH-
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMS-VLGVRPNES--SFGFLAYLYA-LKGLQEKIVELESLMNEFGFSSQM- 291 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~--t~~~li~~~~-~~g~~~~a~~~~~~~~~~g~~~~~- 291 (662)
..+...|..+|..- ++.++-+. +..+.|... ++-.+...+. ...+++.|+..+++.....-.++.
T Consensus 27 ~~~l~~Y~kLI~~a----------i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIATA----------IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred hhhHHHHHHHHHHH----------HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34556677776644 33444444 333444333 3334455555 567899999998876544322221
Q ss_pred ----HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 038801 292 ----VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV-VKGFLQNGNVKGLANLIIEAQKLEPSGIVV 366 (662)
Q Consensus 292 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 366 (662)
.+...++..+.+.+... |.+.+.+.++.....+..+-...+.-+ +.-+...++...|.+.++.+.........|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 22345667777777666 888888888765443333333444444 333334479999999999987644333344
Q ss_pred ccchHHHHHHHHH--hcCChHHHHHHHHHHHHCC---------CCCChhhHHHHHHHHH--HcCCHHHHHHHHHHH
Q 038801 367 DRSVGFGIISACV--NLGLSDKAHSILDEMNACG---------CSVGLGVYVPTLKAYC--KEHRTAEATQLVMDI 429 (662)
Q Consensus 367 ~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m 429 (662)
-..++..++.+.. +.+..+++.+..+++.... ..|-..++..+++.++ ..|+++.+...++++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555554 3455667777776663321 1345667777777665 467766666655544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=82.26 E-value=17 Score=29.77 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEE 203 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (662)
-|..+-..|++ ..+.+..+|..|...++......++..-...+...|++++|.++|+.
T Consensus 67 RylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 67 RYLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33334344444 34499999999999999888999999999999999999999999986
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.03 E-value=5.4 Score=23.17 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKL 359 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 359 (662)
.|..+...+...|++++|++.|++..++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666677777777777666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.61 E-value=13 Score=37.30 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYA 595 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~ 595 (662)
|.--...|+.-.|.+-+....... .-++.........+...|+++.+.+.+.... .-+.....+...+++.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~--------~~~~s~~~~~~~~~r~ 366 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVE--------KIIGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchh--------hhhcCCchHHHHHHHh
Q ss_pred HHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
..+.|++++|...-+.|....+. |.+.+.-.+.....|-.+++---+++++.++|..
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=80.90 E-value=86 Score=33.76 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHh
Q 038801 68 ITSLETNLHKSLLTNNTDEAWKSFKSL 94 (662)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~A~~~~~~~ 94 (662)
+.-|+ .+..++-+|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56676 788889999999999998443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.85 E-value=11 Score=28.91 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
..+-+..+....+.|+..+..+.++++-+.+++..|.++|+-++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444455555666666666666666666666666666666544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=80.72 E-value=21 Score=29.79 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc--ccccchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGI--VVDRSVGFGIISACVNLGL-SDKAHSILDEMNACGCSVGLGVYVPT 409 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 409 (662)
.|.++.-....++....+.+++.+..+....+ ..+...|.+++.+.+.... ---+..+|..|.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555666666655555533222111 1233344444444433333 22334444444444444444444444
Q ss_pred HHHH
Q 038801 410 LKAY 413 (662)
Q Consensus 410 i~~~ 413 (662)
|.++
T Consensus 122 i~~~ 125 (145)
T PF13762_consen 122 IKAA 125 (145)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.71 E-value=3.8 Score=25.29 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
++.|...|...|++++|..++++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 4444444444444444444444443
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.32 E-value=46 Score=30.28 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=83.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038801 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559 (662)
Q Consensus 480 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 559 (662)
+..|.+.-++..|....+++.+ +++ + .+-+--|.+..+..--.++.+-....++.-+..-...++ +...||
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE--PIQ----S-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE--PIQ----S-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh--hHH----h-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 3344444455555555555544 221 1 223334556655555555555555566665555555553 456788
Q ss_pred HHHHHHHHHHHHHhhcccCCC-----CCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 038801 560 YFSVLMMWHEIKRKISTDGQK-----GIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAFMEN 631 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~~ 631 (662)
...|+.-++.-..-+...... --.|.+.....++..|. .+++++|.+++.++-+.|+.|. +.+.+...|..
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVKN 284 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888888877655322211111 11567767777777664 5789999999999999999974 66666555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.19 E-value=17 Score=32.16 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKA 387 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 387 (662)
..+.+++..++.....+...+-.+|...+.+|.+.+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555555544444455555555555555555555544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.08 E-value=75 Score=32.60 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=93.7
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
..|-...-+++..+..+.+..-.+.+..+|..-| -+-..|..++++|..+ ..++-..+|+++.+..+. | .....-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-D-vv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-D-VVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-h-HHHHHH
Confidence 3455566677788888888888888888887764 3667778888888887 557777888887776532 2 233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcc------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038801 480 MTGLMENHRPELMAAFLDEVVEDPRVEV------KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPNDQTYLSLIN 552 (662)
Q Consensus 480 l~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 552 (662)
+..+...++.+.+..+|.++... +-| -...|..++..- ..+.+..+.+..++... |..--.+.+.-+..
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33333446666666666666543 111 112344433221 23445555555554432 33333344555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 038801 553 GYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~ 571 (662)
-|....++++|++++..+.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 214 KYSENENWTEAIRILKHIL 232 (711)
T ss_pred HhccccCHHHHHHHHHHHh
Confidence 5555666666666666555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 74/517 (14%), Positives = 151/517 (29%), Gaps = 157/517 (30%)
Query: 198 LKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVI----ETMSVLGVR 253
L VFE+ A +N D + V D K I E ++ +
Sbjct: 22 LSVFED----AFVDNFDC-------------------KDVQDMPKSILSKEEIDHIIMSK 58
Query: 254 PNESSFGFLAYLYALKGLQEKIVEL---ESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310
S L + L QE++V+ E L + F L+S E
Sbjct: 59 DAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKF---------LMSPIKT----EQR 103
Query: 311 SRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNV---KGLANLIIEAQKLEPS-GIVV 366
+ ++ + F + NV + L +L P+ +++
Sbjct: 104 QPS-------MMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 367 DRSVGFG----IISAC---------------VNLGLSDKAHSILDEMNA-C--------- 397
D +G G + C +NL + ++L+ +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 398 GCSVGLGVYVPT------LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA-LIEA--- 447
+ + L+ K LV+ +V +A A
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLL--------NV--QNAKAWNAFNL 264
Query: 448 ----SITSQDFQSAFSL-FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED 502
+T++ Q L + L + L+ +LD +D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSM-------TLTPDEVKSLLLKYLDCRPQD 317
Query: 503 -PRVEVKTHDWN-SIIHAFCKAG--RLE-------DAKRTLRRMIFLQFEPND--QTYLS 549
PR + T+ SII + G + D T+ EP + + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 550 L-I---NGYVTAEQYFSVLMM-WHEIKRKISTDGQKGIKFEHN--LVDA-------FLYA 595
L + + ++ +L + W ++ I +D + H LV+ + +
Sbjct: 378 LSVFPPSAHIPTI----LLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 596 LVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENH 632
+ + + +++ + + VD + + F +
Sbjct: 431 I----YLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 2e-08
Identities = 26/241 (10%), Positives = 64/241 (26%), Gaps = 8/241 (3%)
Query: 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT 478
A L + L++ + + +A++ + L
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 479 IMTGLMENHRPELMAAFLDEVVEDP--RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536
+ + L L R + +N+++ + + G ++ L +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 537 FLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596
P+ +Y + + +Q I+R + Q+G+K + L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQD------AGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
Query: 597 VKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKN 656
+ AV +V + + + K K + F+
Sbjct: 247 DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
Query: 657 W 657
Sbjct: 307 Q 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 5e-07
Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 6/223 (2%)
Query: 374 IISACVNLGLSDKAHSILD---EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS 430
C+ AH +L + L +Y + + ++ E ++ +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 431 SSGLQLDVGNYDALIEASI-TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP 489
+GL D+ +Y A ++ QD + M + + +++
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 490 ELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS 549
+ + P++ + + + K GR+ K L Q Q ++
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL-QCLFEKQLHME 311
Query: 550 LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592
L V + E+K T ++E L A
Sbjct: 312 L-ASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRAL 353
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 662 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.12 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.82 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.64 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.5 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.47 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.34 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.34 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.28 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.23 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.19 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.18 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.17 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.16 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.14 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.05 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.04 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.04 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.04 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.98 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.97 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.95 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.95 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.94 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.94 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.93 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.9 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.81 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.79 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.77 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.75 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.71 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.69 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.68 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.67 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.61 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.42 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.2 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.02 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.99 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.91 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.91 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.86 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.88 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.77 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.72 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.56 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.52 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.77 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.75 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.55 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.19 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.83 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.8 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.44 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.37 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.16 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.07 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.56 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.99 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.97 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.87 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.61 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.64 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.15 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.84 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.25 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.53 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.04 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.35 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.69 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.31 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.93 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.86 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=344.85 Aligned_cols=483 Identities=11% Similarity=-0.013 Sum_probs=376.3
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccH
Q 038801 101 PSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELW 180 (662)
Q Consensus 101 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 180 (662)
++...|+.++..+.+.|+.+.+...++.+. .. .|+..++..++.+|.+.|++++|+.+|+.+... +.+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 152 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL---DI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSAC 152 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH---hh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhH
Confidence 456667777777777777666666655543 11 234466667777777777777777777766442 344445
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhh--------hhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 038801 181 GGFLVDICRKNSNFVAFLKVFEECCRIA--------LDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGV 252 (662)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~ 252 (662)
...++.+|.+.|++++|+++|+++.... ......+...+..+|+.++.+|.+. |++++|+++|++|.+.+
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~- 230 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL-SNFDRAKECYKEALMVD- 230 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-
Confidence 6667777777777777777777421100 0000113355789999999999998 99999999999998764
Q ss_pred CCC-cccHHHHHHHHHHcCCHH--HHHHH-HHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCC
Q 038801 253 RPN-ESSFGFLAYLYALKGLQE--KIVEL-ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF 328 (662)
Q Consensus 253 ~p~-~~t~~~li~~~~~~g~~~--~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 328 (662)
|+ ...+..+...+...+..+ .+..+ +..+...+......+|+.++..|.+.|++++|.++|.++++. .+
T Consensus 231 -p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~ 303 (597)
T 2xpi_A 231 -AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL------EK 303 (597)
T ss_dssp -TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG------GG
T ss_pred -chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC------Cc
Confidence 44 333444433333222221 12222 455555555566777888899999999999999998766553 25
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
+..+|+.++.+|.+.|++++|.++|+++.+..+ .+..++..++.++.+.|++++|.++++++.+.. +.+..+++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDP----YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 899999999999999999999999999987432 367788999999999999999999999998754 667899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
++.+|.+.|++++|.++|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|+
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC
Confidence 9999999999999999999998753 2367899999999999999999999999999875 5677899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 038801 489 PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN--DQTYLSLINGYVTAEQYFS 562 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~ 562 (662)
+++|.++|+++.+..+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++
T Consensus 457 ~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999987522 35678999999999999999999999999876 66887 7899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|+++++++. +.+ ..+..+|..+..+|.+.|++++|.++++++.+.++.
T Consensus 535 A~~~~~~~~-------~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 535 AIDALNQGL-------LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHH-------HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-------HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 999999998 222 236789999999999999999999999999887655
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=340.85 Aligned_cols=493 Identities=10% Similarity=-0.069 Sum_probs=405.9
Q ss_pred ccccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCC
Q 038801 62 TLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLD 141 (662)
Q Consensus 62 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (662)
..+.++...|+.++..+.+.|++++|+.+|+++... .|+..++..+..++.+.|+.+.+...++.+. ..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~ 149 (597)
T 2xpi_A 78 TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKED------LYNRS 149 (597)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC------GGGTC
T ss_pred cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHh------ccccc
Confidence 344567889999999999999999999999999853 4788899999999999999888877776532 23578
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHhcC--------------CCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 038801 142 FQTVHTLLGSMRNANTAAPAFALVKCMFKNR--------------YFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRI 207 (662)
Q Consensus 142 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 207 (662)
..+++.++.+|.+.|++++|+.+|+++.... ..+.....+..++..|.+.|++++|+++|+++.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999532221 11234567888999999999999999999999873
Q ss_pred hhhhhcCCCCc-cHHHHHHHHHHHhccCCChhHHH--HH-HHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 208 ALDENLDFMKP-NIYACNAALEGCCYGLQSVSDAE--KV-IETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMN 283 (662)
Q Consensus 208 ~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~--~~-~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 283 (662)
.| +...+..+...+... +..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+.+.
T Consensus 230 ---------~p~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 230 ---------DAKCYEAFDQLVSNHLLT-ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp ---------CTTCHHHHHHHHHTTCSC-HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred ---------CchhhHHHHHHHHhhccc-chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 33 445555555544432 3222221 11 5566655556666677888889999999999999999998
Q ss_pred hcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 038801 284 EFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363 (662)
Q Consensus 284 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 363 (662)
+. +++..+++.++.+|.+.|++++|.++|.++++..+. +..+|+.++.++.+.|++++|.++++++.+.
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 368 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-----NLDVYPLHLASLHESGEKNKLYLISNDLVDR---- 368 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Confidence 76 588999999999999999999999999998875422 6788999999999999999999999999763
Q ss_pred cccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038801 364 IVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443 (662)
Q Consensus 364 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 443 (662)
.+.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+.
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 446 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLF 446 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 23456788889999999999999999999998864 4568899999999999999999999999999874 337899999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCccc--hhhHHHHHHH
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP---RVEVK--THDWNSIIHA 518 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~ 518 (662)
++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 9999999999999999999999875 5677899999999999999999999999987642 45676 6799999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYAL 596 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~ 596 (662)
|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+.|++++|.+.|+++. .+.|+. ..+..+..+|
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l---------~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL---------AISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH---------hcCCCChHHHHHHHHHH
Confidence 999999999999999999864 3377899999999999999999999999999 345543 5555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=268.21 Aligned_cols=186 Identities=13% Similarity=0.221 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC---------HHHHHHHHHHHHHcCCCCCccc
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQD---------FQSAFSLFRDMREARIYDLKGS 475 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~~~~~~ 475 (662)
+++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444455555555555555555555555555555555555555544332 3455555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
|++||.+|++.|++++|.++|++|.+. |+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 555555555555555555555555553 5555556666666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK 598 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 598 (662)
+.|+.++|.+++++|+ +.|..|+..||+.++..+..
T Consensus 187 ~~g~~d~A~~ll~~Mr-------~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-------DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHH-------HHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHH-------HhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666 55566666666665555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=265.62 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=165.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCChh
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR---------TAEATQLVMDISSSGLQLDVG 439 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~ 439 (662)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45677788888888888888888888888888888888888888876654 678888888888888888888
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
||++||.+|++.|++++|.++|++|.+.|+.|+..||+.+|.+|++.|+.++|.++|++|.+. |+.||..+|++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 899999999888888899999988888888888888999999999989999999999888886 8999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTA 557 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 557 (662)
++.|+.++|.++|++|.+.|+.|+..||++++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=228.76 Aligned_cols=361 Identities=11% Similarity=0.027 Sum_probs=308.4
Q ss_pred HHhccCCChhHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCh
Q 038801 229 GCCYGLQSVSDAEKVIETMSVLGVRPNE-SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNL 307 (662)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 307 (662)
.+.+. |++++|++.++.+.+. .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 8 ~~~~~-g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQA-GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 44555 9999999999998775 4554 445556677889999999999999988864 56788999999999999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc-chHHHHHHHHHhcCChHH
Q 038801 308 ESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR-SVGFGIISACVNLGLSDK 386 (662)
Q Consensus 308 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 386 (662)
++|...|.+++...+. +..+|..+..++.+.|++++|.+.|+++.+.. |+. ..+..+...+...|++++
T Consensus 84 ~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----PDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHH
Confidence 9999999998875422 56789999999999999999999999997643 443 345567788888999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
|.+.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.+. .+...|..+...+...|++++|...|++..+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 154 AKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998864 45678999999999999999999999999998742 2567889999999999999999999999988
Q ss_pred cCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038801 467 ARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546 (662)
Q Consensus 467 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 546 (662)
.. |.+..++..+...+...|++++|...++++.+..+. +..+|..+..+|.+.|++++|.+.|+++.+.. ..+..+
T Consensus 232 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 307 (388)
T 1w3b_A 232 LS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS 307 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHH
Confidence 75 556788999999999999999999999999885332 35679999999999999999999999999863 446789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|..+...+...|++++|+..++++. ...|+ ..++..+..++.+.|++++|.+.++++.+..+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKAL---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT---------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999998 33454 578999999999999999999999999876543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-26 Score=229.40 Aligned_cols=378 Identities=12% Similarity=0.027 Sum_probs=319.5
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc-HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038801 185 VDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN-IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLA 263 (662)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 263 (662)
...+.+.|++++|.+.++++.+. .|+ ...+..+...+... |++++|...++...+.. +.+..+|..+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ---------EPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 34455789999999999998773 444 44555555566665 99999999999987754 55677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc
Q 038801 264 YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN 343 (662)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 343 (662)
.++.+.|++++|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|.+.++..+. +...+..+...+...
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-----LYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHc
Confidence 99999999999999999998864 334678999999999999999999999998876432 556788888999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 038801 344 GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423 (662)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (662)
|++++|.+.|+++.+..+. +..++..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|.
T Consensus 149 g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPN----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred cCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999864322 45678889999999999999999999999875 556788999999999999999999
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 038801 424 QLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED 502 (662)
Q Consensus 424 ~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 502 (662)
..|++..+. .| +..++..+..+|.+.|++++|...|+++.+.+ +.+..++..+...+.+.|++++|...++++.+.
T Consensus 224 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 224 AAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999876 44 57889999999999999999999999999875 555678999999999999999999999999885
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC
Q 038801 503 PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG 581 (662)
Q Consensus 503 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 581 (662)
. ..+..+|+.+...+.+.|++++|.+.++++.+. .| +..++..+..++.+.|++++|+..|+++. .
T Consensus 301 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~---------~ 367 (388)
T 1w3b_A 301 C--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---------R 367 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH---------T
T ss_pred C--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------h
Confidence 2 345678999999999999999999999999975 45 46799999999999999999999999999 3
Q ss_pred Cccc-HHHHHHHHHHHHccC
Q 038801 582 IKFE-HNLVDAFLYALVKGG 600 (662)
Q Consensus 582 ~~p~-~~~~~~l~~~~~~~g 600 (662)
+.|+ ...|..+...+.+.|
T Consensus 368 ~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTC
T ss_pred hCCCCHHHHHhHHHHHHHcc
Confidence 4564 467777777666555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-22 Score=210.19 Aligned_cols=447 Identities=9% Similarity=-0.056 Sum_probs=317.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHH
Q 038801 143 QTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYA 222 (662)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (662)
..+......+.+.|++++|+..|+++.+.. | +...+..+...+.+.|++++|+..|+++.+. .+.+...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 75 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALEL--------KPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--------ChHHHHH
Confidence 456667788888899999999999988865 3 3555666788888889999999999988773 2345567
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 038801 223 CNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYV 302 (662)
Q Consensus 223 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 302 (662)
|..+...+... |++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+......-.....
T Consensus 76 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
T 2gw1_A 76 LLRRASANEGL-GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD 153 (514)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence 88888888887 99999999999888765 34555555555555554444444444433333322222211111111111
Q ss_pred hcCChhhHHHHHHHHHcCCCCC------CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----h--CCCCc--
Q 038801 303 KLGNLESASRTILLCLGGGNME------QSDFSKETYCEVVKGFLQ---NGNVKGLANLIIEAQK-----L--EPSGI-- 364 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~------~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~--~~~~~-- 364 (662)
..........+ ...+...... ....+...+......+.. .|++++|..+|+++.. + .+...
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 154 KQENLPSVTSM-ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ---CCCCHHHH-HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hccCCchhHHH-HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 11111111111 1111111000 001124555555555554 8999999999999876 3 22111
Q ss_pred -ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038801 365 -VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443 (662)
Q Consensus 365 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 443 (662)
+.+...+..+...+...|++++|...++++.+.. |+...+..+..+|...|++++|...++++.+.. ..+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHH
Confidence 2334566778889999999999999999998875 338889999999999999999999999998864 236778899
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 523 (662)
+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+..+. +...|..+...|...|
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--APEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHCC
Confidence 9999999999999999999999875 456678899999999999999999999998875332 4567899999999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHH
Q 038801 524 RLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVT---AEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLY 594 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~ 594 (662)
++++|...++++.+... .++ ...|..+...+.. .|++++|...++++.+ ..| +..++..+..
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---------LDPRSEQAKIGLAQ 457 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---------HCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---------hCcccHHHHHHHHH
Confidence 99999999999987421 111 3488999999999 9999999999999983 234 4578888999
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
++.+.|++++|.+.++++.+.++.
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHhcCHHHHHHHHHHHHHhccc
Confidence 999999999999999999887765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-21 Score=205.05 Aligned_cols=453 Identities=10% Similarity=-0.020 Sum_probs=280.8
Q ss_pred hhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHH
Q 038801 67 NITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVH 146 (662)
Q Consensus 67 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (662)
....+......+...|++++|+..|+++.+.. |++..+..+..++...|+.+.+...++... ...+ .+..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p--~~~~~~~ 77 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKP--DYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCS--CCHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccCh--HHHHHHH
Confidence 34556667777888888888888888887654 777777777777777777666665555443 2222 3445666
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+..++...|++++|+..|+.+.+.+ |........++..+.+......+.+.+..+... +..|+...++.-
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~ 148 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-------TATPTELSTQPA 148 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhccCChh
Confidence 67777777777777777777766644 222222222222222222222222222222110 011111111111
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh---
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK--- 303 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 303 (662)
....... ........+...+......++. .....+.+...+..+...+..
T Consensus 149 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 149 KERKDKQ-ENLPSVTSMASFFGIFKPELTF--------------------------ANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCC--------------------------SSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred hHHHhhc-cCCchhHHHHHHHhhcCHHHHH--------------------------HHhcCCcHHHHHHHHHHHHHHhhh
Confidence 1100000 1111111111111000000000 000001223334444444443
Q ss_pred cCChhhHHHHHHHHHc-----CCCCCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHH
Q 038801 304 LGNLESASRTILLCLG-----GGNMEQS----DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI 374 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~-----~~~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~l 374 (662)
.|++++|...|.+.++ ....... ..+...|..+...+...|++++|.+.|+++....+ +...+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~l 276 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-----RVNSYIYM 276 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-----CHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----cHHHHHHH
Confidence 6778888887777766 2110110 11456777788888888888888888888876432 25566777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...+..+...+...|++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCH
Confidence 888888888888888888888764 456678888888888899999999999888876422 567788888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc----hhhHHHHHHHHHh---cCCHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK----THDWNSIIHAFCK---AGRLED 527 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~ 527 (662)
++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+..+-.++ ...|..+...|.. .|++++
T Consensus 355 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 355 DDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 99999998888764 455677888888889999999999988887664222222 3378888999999 999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 528 AKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
|...|+++.+.. ..+..++..+...+...|++++|...|+++.
T Consensus 434 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 434 ATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999988753 2355788889999999999999999999998
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-21 Score=198.21 Aligned_cols=344 Identities=13% Similarity=0.053 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
...|..+...+... |++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 26 ~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAA-GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 33444555555554 55555555555554432 2234444455555555555555555555555443 223444555555
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSK---ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~ 376 (662)
+|.+.|++++|.+.|.+++...+. +. ..+..++..+... .+..+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~--------------------------~~~~~a~ 151 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-----ENEEKEAQSQLIKSDEMQ--------------------------RLRSQAL 151 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-----HHHHHHHHHHHHHHHHHH--------------------------HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHHH--------------------------HHHHHHH
Confidence 555555555555555444443211 22 3333333331100 1112344
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
.+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|..+|+++.+.. ..+..+|..+..+|...|++++
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4667788888888888877754 4567778888888888888888888888877652 2356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCcccHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhc
Q 038801 457 AFSLFRDMREARIYDLKGSYLTI------------MTGLMENHRPELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKA 522 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~ 522 (662)
|...|+++.+.. +.+...+..+ ...+...|++++|..+|+++.+..+..+. ...|..+..++.+.
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 888888887653 3333344443 67888889999999999888774333222 34788888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHH-----
Q 038801 523 GRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYA----- 595 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~----- 595 (662)
|++++|...++++.+. .| +...|..+..+|...|++++|...++++. .+.|+. ..+..+..+
T Consensus 309 g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ---------EHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------TTSSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------HhCcchHHHHHHHHHHHHHhh
Confidence 9999999999998875 44 56889999999999999999999999998 355554 455555422
Q ss_pred -------HHccC-----chHHHHHHHHH
Q 038801 596 -------LVKGG-----FFDAVMQVVEK 611 (662)
Q Consensus 596 -------~~~~g-----~~~~A~~~~~~ 611 (662)
|...| +.+++.+.+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 33333 55667777776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-21 Score=199.33 Aligned_cols=303 Identities=14% Similarity=0.088 Sum_probs=216.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccch
Q 038801 291 MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSV 370 (662)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (662)
...+..+...|.+.|++++|..+|.+++...+. +...|..+..++...|++++|++.|+++.+..+. +...
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~ 96 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----FTAA 96 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----cHHH
Confidence 444455555555555555555555444443211 3445555555555555555555555555442211 2334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHH------------HHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGL---GVYVP------------TLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
+..+..++...|++++|.+.|+++.+.. +.+. ..+.. +...+.+.|++++|...|+++.+.. .
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 174 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-V 174 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 4445555555555555555555555432 1222 33333 3455889999999999999998863 2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 515 (662)
.+...+..+..+|.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+++.+..+- +...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~ 251 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD--HKRCFAHY 251 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHH
Confidence 377889999999999999999999999999874 566789999999999999999999999999874222 23344444
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccC
Q 038801 516 ------------IHAFCKAGRLEDAKRTLRRMIFLQFEPN-----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 516 ------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
...|.+.|++++|...|+++.+. .|+ ...|..+..++.+.|++++|+..++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------ 323 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ------ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 78999999999999999999984 565 34788899999999999999999999982
Q ss_pred CCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 579 QKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 579 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+.| +..++..+..+|.+.|++++|.+.++++.+..+.
T Consensus 324 ---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 324 ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred ---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 334 5688999999999999999999999999886655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-20 Score=198.74 Aligned_cols=412 Identities=10% Similarity=0.020 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
...|..+-..+... |++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA-KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHT-TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34566677778887 99999999999998764 4467788888999999999999999999999875 456888999999
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CcccccchH-----
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS---GIVVDRSVG----- 371 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~~----- 371 (662)
++...|++++|...| +.+.. ++......+..+...+...+|...++++....+. ...|+....
T Consensus 102 ~~~~~g~~~~A~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDL-SVLSL--------NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHH-HHHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH-HHHhc--------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 999999999999997 46554 2222233345566666677888888887442111 111111111
Q ss_pred ---------------------HHHHHHHH------------hcCChHHHHHHHHHHHHCCCCCC-------hhhHHHHHH
Q 038801 372 ---------------------FGIISACV------------NLGLSDKAHSILDEMNACGCSVG-------LGVYVPTLK 411 (662)
Q Consensus 372 ---------------------~~ll~~~~------------~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~ 411 (662)
..+..++. ..|++++|..+++++.+.. +.+ ..++..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHH
Confidence 11112221 1247889999999998764 223 235777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
.+...|++++|...|++..+. .|+...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 889999999999999999987 5668889999999999999999999999999876 5567789999999999999999
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
|...+++..+..+. +...|..+...|...|++++|.+.++++.+.. ..+...+..+...+...|++++|++.++++.
T Consensus 329 A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE--NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHCTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999875332 35678999999999999999999999999863 2345789999999999999999999999998
Q ss_pred HhhcccCCCCCcccHHHHHHHHHHHHcc----------CchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHH
Q 038801 572 RKISTDGQKGIKFEHNLVDAFLYALVKG----------GFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 572 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
+..+... ........+..+..++.+. |++++|...++++.+..+. ++.+..+...+...|+.+.|..
T Consensus 406 ~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 406 RLEEVQE--KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHCS--SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCcch--hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 5544221 1112223344555667777 9999999999999877654 5566666777788899999999
Q ss_pred HHHHHHhhHHHH
Q 038801 641 RKRNFKKMEALI 652 (662)
Q Consensus 641 ~~~~~~~l~p~~ 652 (662)
.+++++++.|..
T Consensus 484 ~~~~al~~~~~~ 495 (537)
T 3fp2_A 484 LFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHC--C
T ss_pred HHHHHHHhCCCc
Confidence 999999998763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-20 Score=195.63 Aligned_cols=442 Identities=8% Similarity=-0.032 Sum_probs=321.6
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHH
Q 038801 142 FQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIY 221 (662)
Q Consensus 142 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 221 (662)
...+..+...+.+.|++++|+..|+++.+.. |.....+..+...+.+.|++++|++.|+++.++ .+.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--------KPDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCchHH
Confidence 3567788889999999999999999999854 666777888889999999999999999999874 234567
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcHHhHHHHHH
Q 038801 222 ACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG--FSSQMVFYSSLIS 299 (662)
Q Consensus 222 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 299 (662)
.|..+...+... |++++|+..|+.+. ..|+.. ...+..+...+....|...++.+.... ..+........+.
T Consensus 95 ~~~~la~~~~~~-g~~~~A~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 95 ALLRRASANESL-GNFTDAMFDLSVLS---LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHh---cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 888888888887 99999999997442 233322 223445556666788888888886541 0111112233444
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHhCCCCccc---c
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKE-TYCEVVKGFL--------QNGNVKGLANLIIEAQKLEPSGIVV---D 367 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~--------~~~~~~~a~~~~~~m~~~~~~~~~~---~ 367 (662)
.+....+.+.+...+.+. ....+... ....+...+. ..|++++|..+|+++.+..+..... -
T Consensus 169 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 242 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTS------SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242 (537)
T ss_dssp HHHHTSCHHHHHHTSCCC------CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhc------cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH
Confidence 555666666665443111 11222222 2222222222 2258899999999987532221100 0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038801 368 RSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447 (662)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 447 (662)
..++..+...+...|++++|...++++.+.. |+...+..+...|...|++++|...|+++.+... .+..+|..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 2245566778889999999999999999864 5588899999999999999999999999988642 267889999999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+..+ .+...|..+...|...|++++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999875 55667899999999999999999999999987532 245678999999999999999
Q ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHH
Q 038801 528 AKRTLRRMIFLQ-----FEPNDQTYLSLINGYVTA----------EQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDA 591 (662)
Q Consensus 528 A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ 591 (662)
|.+.|+++.+.. .......+..+...+... |++++|+..++++.+ ..| +...+..
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------~~p~~~~~~~~ 467 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE---------LDPRSEQAKIG 467 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH---------HCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH---------hCCCCHHHHHH
Confidence 999999988632 111223345556677777 999999999999993 234 4578899
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
+..++.+.|++++|.+.++++.+..+...
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999999988776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=167.31 Aligned_cols=315 Identities=12% Similarity=0.072 Sum_probs=189.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHH
Q 038801 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336 (662)
Q Consensus 257 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l 336 (662)
..+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|.+.++..+. +...|..+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l 77 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-----FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----cchHHHHH
Confidence 345556666777777777777777776654 344666777777777777777777777766654322 45667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCccc----ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVV----DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKA 412 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 412 (662)
...+...|++++|.+.|+++.+. .| +...+..+... .. ...+..+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~ 129 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALD 129 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHH
Confidence 77777777777777777776542 22 12222222100 00 0011112344
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHH
Q 038801 413 YCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
+...|++++|...++++.+.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554432 1134445555555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHhhCCCCccchh----------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhc
Q 038801 493 AAFLDEVVEDPRVEVKTH----------DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-----QTYLSLINGYVTA 557 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~ 557 (662)
...+++..+..+-.+... ....+...+.+.|++++|...++++.+. .|+. ..+..+..++...
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHc
Confidence 555555544322111111 1223366688889999999999988875 3443 2355577788888
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 558 EQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 558 ~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|++++|+..++++.+ ..| +..++..+..++.+.|++++|.+.++++.+..+.
T Consensus 286 ~~~~~A~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQ---------MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp TCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred cCHHHHHHHHHHHHH---------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999998882 234 4578888888899999999999999998776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-17 Score=165.98 Aligned_cols=317 Identities=13% Similarity=0.047 Sum_probs=211.6
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
|...+..+-..+... |++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 456677778888887 99999999999998764 3456778888899999999999999999999875 34578899999
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~ 378 (662)
..|...|++++|...|.+.++..+.. ..+...+..+..... ...+..+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~--------------------------~~~~~~~a~~~ 130 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSE--QEEKEAESQLVKADE--------------------------MQRLRSQALDA 130 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHH--------------------------HHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcc--cChHHHHHHHHHHHH--------------------------HHHHHHHHHHH
Confidence 99999999999999998888763200 003444444421100 00122233444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. ..+...+..+...+...|++++|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555443 3344555555555666666666666666555542 124455555555666666666666
Q ss_pred HHHHHHHHcCCCCCcccHH------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch--hhHHHHHHHHHhcCC
Q 038801 459 SLFRDMREARIYDLKGSYL------------TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT--HDWNSIIHAFCKAGR 524 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~ 524 (662)
..|++..+.. +.+...+. .+...+.+.|++++|...++++.+..+..+.. ..+..+..+|...|+
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 209 SEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 6666555543 22222221 22455777777777777777776643322221 235567788888999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 525 LEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+++|.+.+++..+. .| +...|..+...+...|++++|.+.|+++.
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 288 PVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999888875 44 56788888888888999999999999888
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-15 Score=156.74 Aligned_cols=389 Identities=9% Similarity=-0.022 Sum_probs=306.0
Q ss_pred cHHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc
Q 038801 219 NIYACNAALEGCCY----GLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQ 290 (662)
Q Consensus 219 ~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 290 (662)
+...+..+-..|.. . +++++|+..|++..+.| +...+..|-..|.. .++.++|.+.|+...+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETT-KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 55555555555655 5 89999999999998765 45677777788888 899999999999998875 5
Q ss_pred HHhHHHHHHHHHh----cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC
Q 038801 291 MVFYSSLISGYVK----LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQ----NGNVKGLANLIIEAQKLEPS 362 (662)
Q Consensus 291 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~ 362 (662)
...+..|...|.. .++.++|.+.|.+..+.. +...+..+...|.. .++.++|++.|++..+ .
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~---~ 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE---Q 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---C
Confidence 5667778888888 789999999998888764 77888888888887 8899999999999876 3
Q ss_pred CcccccchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 038801 363 GIVVDRSVGFGIISACVN----LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGL 434 (662)
Q Consensus 363 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 434 (662)
+ +...+..+...+.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 2 45566777778877 899999999999999876 55677888888886 789999999999998864
Q ss_pred CCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCC
Q 038801 435 QLDVGNYDALIEASIT----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN-----HRPELMAAFLDEVVEDPRV 505 (662)
Q Consensus 435 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~ 505 (662)
+...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|..++++..+. +
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T-
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C-
Confidence 55677777777777 899999999999998775 334677777888877 8999999999998875 3
Q ss_pred ccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccC
Q 038801 506 EVKTHDWNSIIHAFCKAG---RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 506 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
+...+..+...|...| +.++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..
T Consensus 327 --~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~------- 394 (490)
T 2xm6_A 327 --DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA------- 394 (490)
T ss_dssp --CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------
T ss_pred --CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------
Confidence 3456777888888766 8899999999999863 67788888888888 899999999999998
Q ss_pred CCCCcccHHHHHHHHHHHHc----cCchHHHHHHHHHHHhCCCC-CC--HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 579 QKGIKFEHNLVDAFLYALVK----GGFFDAVMQVVEKSQEMKVF-VD--KWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 579 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~--~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
+.+ +...+..|...|.+ .+++++|..++++..+.++. |+ .....++.+.. .+.+.++...++.++-.|.
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~-~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA-KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHHHHHCH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH-hHHHHHHHHHHHHHHHHHH
Confidence 544 45677788888887 89999999999999988854 21 22222222211 3445556666666665555
Q ss_pred HHH
Q 038801 652 IAF 654 (662)
Q Consensus 652 ~~~ 654 (662)
.+.
T Consensus 471 ~~~ 473 (490)
T 2xm6_A 471 EAW 473 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-16 Score=163.07 Aligned_cols=412 Identities=8% Similarity=-0.032 Sum_probs=298.6
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHH
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (662)
+-|...|..++. +.+. |++++|..+|+++.+.. +-+...|...+..+.+.|++++|..+|+.+.... |+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~-~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQN-QPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHS-SCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHh-CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 447789999998 4666 99999999999998752 3455568888999999999999999999999864 78777777
Q ss_pred HHHH-HHhcCChhhHHH----HHHHHHcCCCCCCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCC
Q 038801 297 LISG-YVKLGNLESASR----TILLCLGGGNMEQSDF-SKETYCEVVKGFLQ---------NGNVKGLANLIIEAQKLEP 361 (662)
Q Consensus 297 li~~-~~~~g~~~~A~~----~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~ 361 (662)
++.. ....|+.++|.+ +|.+.+... |..| +...|...+..... .|++++|..+|++... .|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~---g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P 160 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKI---GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NP 160 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHT---TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-ch
Confidence 7753 345677777765 666666542 2222 56788888776655 7899999999999864 11
Q ss_pred CCcccccchHHHHHHHH-------------HhcCChHHHHHHHHHHH------HCC---CCCC--------hhhHHHHHH
Q 038801 362 SGIVVDRSVGFGIISAC-------------VNLGLSDKAHSILDEMN------ACG---CSVG--------LGVYVPTLK 411 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~~~--------~~~~~~li~ 411 (662)
.......|....... ...++++.|..++..+. +.. ++|+ ...|...+.
T Consensus 161 --~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 161 --MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp --CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 111112222211110 12345677777776532 221 2333 245555553
Q ss_pred HHHHc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHcCC
Q 038801 412 AYCKE----HRT----AEATQLVMDISSSGLQLDVGNYDALIEASIT-------SQDFQ-------SAFSLFRDMREARI 469 (662)
Q Consensus 412 ~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~ 469 (662)
..... ++. +.+..+|++..... .-+...|..++..+.+ .|+++ +|..+|++..+.-.
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 33222 232 47788999988762 2267788888888775 79987 89999999987433
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYL 548 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~ 548 (662)
|.+...+..++..+.+.|++++|..+|+++.+..+..+ ...|..++..+.+.|++++|.++|++..+. .|+ ...|.
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~ 394 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYV 394 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHH
Confidence 56677888999999999999999999999998522221 247999999999999999999999999975 333 33333
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC-CCC----H
Q 038801 549 SLING-YVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV-FVD----K 621 (662)
Q Consensus 549 ~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 621 (662)
..... +...|++++|..+|++..+ ..| +...|..++..+.+.|+.++|..+|+++.+.++ .|+ .
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~---------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLK---------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 32222 3358999999999999983 234 457888999999999999999999999988754 455 7
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 622 WKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 622 ~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
|...+.+...+|+.+.+..+.+++++..|.+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 8777888888999999999999999999853
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-18 Score=169.31 Aligned_cols=292 Identities=8% Similarity=-0.024 Sum_probs=199.9
Q ss_pred hcCCHHHHHH-HHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 342 QNGNVKGLAN-LIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 342 ~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..|++++|.+ .|++...+.+.....+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666666 66554433222222234556667777777777777777777777764 456667777777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH---------------HHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT---------------IMTGLME 485 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~~ 485 (662)
+|...|+++.+.. ..+..++..+...|...|++++|...|+++.+... .+...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 7777777777653 22566777777777777777777777777776542 22222211 2333447
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVL 564 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~ 564 (662)
.|++++|...++++.+..+..++..++..+...|.+.|++++|...|+++.+. .| +...|..+...+...|++++|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888775443335677888888888999999999999888875 34 4578888888888899999999
Q ss_pred HHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC------------CCHHhHHHHHHHH
Q 038801 565 MMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF------------VDKWKYKQAFMEN 631 (662)
Q Consensus 565 ~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~------------p~~~~~~~~~~~~ 631 (662)
..++++.+ +.| +...+..+..++.+.|++++|...++++.+..+. ++.|..+...+..
T Consensus 272 ~~~~~al~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 272 AAYRRALE---------LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HHHHHHHH---------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 99988882 233 3577888888888999999999998888654332 3466666777778
Q ss_pred hhhhhhhHHHHHHHHh
Q 038801 632 HKKLKVAKLRKRNFKK 647 (662)
Q Consensus 632 ~~~~~~a~~~~~~~~~ 647 (662)
.|+.+.|..+.++.++
T Consensus 343 ~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 343 LGQSDAYGAADARDLS 358 (368)
T ss_dssp HTCGGGHHHHHTTCHH
T ss_pred hCChHhHHHhHHHHHH
Confidence 8888888888775554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-17 Score=160.59 Aligned_cols=300 Identities=13% Similarity=-0.028 Sum_probs=157.6
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH
Q 038801 253 RPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET 332 (662)
Q Consensus 253 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 332 (662)
+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|...+.+.++..+. +...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 92 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-----NPVS 92 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----STHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----CHHH
Confidence 3444455555555555666666666666655543 233444444555555556666666655555543221 3445
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038801 333 YCEVVKGFLQNG-NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411 (662)
Q Consensus 333 ~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 411 (662)
|..+...+...| ++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEK----TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCT----TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 555555555555 55555555555543211 123334445555555555555555555555432 223344444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
.|...|++++|...|++..+.. ..+...+..+...+...|++++|...+++..+......
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------- 227 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG------------------- 227 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS-------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc-------------------
Confidence 5555555555555555554432 11334444455555555555555555554443210000
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.......+..+|..+..+|...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++++.
T Consensus 228 ---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 228 ---------NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp ---------CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ---------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 000112234567777777777777777777777777642 2244677777777777788888877777776
Q ss_pred HhhcccCCCCCcc-cHHHHHHHHHHH-HccCch
Q 038801 572 RKISTDGQKGIKF-EHNLVDAFLYAL-VKGGFF 602 (662)
Q Consensus 572 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~ 602 (662)
.+.| +...+..+..++ ...|+.
T Consensus 298 ---------~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 298 ---------GLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp ---------TTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred ---------ccCCCchHHHHHHHHHHHHHhCch
Confidence 3344 345566666665 345543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-14 Score=155.93 Aligned_cols=281 Identities=15% Similarity=0.162 Sum_probs=169.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHH
Q 038801 268 LKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVK 347 (662)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 347 (662)
..+++++|.++.++. -+..+|..+..++.+.|++++|.+.|.+. . |...|..++.++.+.|+++
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA---d-------D~say~eVa~~~~~lGkyE 1151 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-------DPSSYMEVVQAANTSGNWE 1151 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---C-------ChHHHHHHHHHHHHcCCHH
Confidence 455556655555533 22445556666666666666666655322 1 5556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 038801 348 GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVM 427 (662)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (662)
+|.+.|...++. .++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|.
T Consensus 1152 EAIeyL~mArk~-----~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1152 ELVKYLQMARKK-----ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHHHHHHHHHhh-----cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666655431 122222333566666666655433221 1 2344445556666666666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 038801 428 DISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV 507 (662)
Q Consensus 428 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 507 (662)
.. ..|..+..+|++.|++++|.+.+++. .+..+|.-+..+|...|++..|......+. .
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v 1278 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------V 1278 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------c
Confidence 53 25666666666666666666666655 222466666666666666666665544322 2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVT--AEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
+...+..++..|.+.|.+++|..+++..+.. .+.. ..|+-|...+++ -++..+++++|..-. .+.+
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~ri---------ni~k 1347 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---------NIPK 1347 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---------ccch
Confidence 3446778889999999999999999888753 4433 467666666665 355556666655333 3333
Q ss_pred ------cHHHHHHHHHHHHccCchHHHHHH
Q 038801 585 ------EHNLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 585 ------~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
+...|..++..|.+.|+++.|...
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 346788999999999999999843
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-16 Score=156.43 Aligned_cols=271 Identities=10% Similarity=-0.055 Sum_probs=210.4
Q ss_pred CCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhH
Q 038801 215 FMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFY 294 (662)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 294 (662)
+...+...+..+...+... |++++|+++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+..++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYN-CDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 3445555677778888887 99999999999998764 4456677778889999999999999999999874 4457888
Q ss_pred HHHHHHHHhcC-ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH
Q 038801 295 SSLISGYVKLG-NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG 373 (662)
Q Consensus 295 ~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 373 (662)
..+...+...| ++++|...|.+.+...+. +...|..+...+...|++++|.+.|+++.+..+. +...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~ 164 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-----YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG----CHLPMLY 164 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-----CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT----CSHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc----cHHHHHH
Confidence 99999999999 999999999998876432 6778999999999999999999999999874433 4456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------CCChhhHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL--------QLDVGNYDALI 445 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------~~~~~~~~~li 445 (662)
+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|++..+... ..+...+..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 8899999999999999999999875 56788999999999999999999999999876421 22356777888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEV 499 (662)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 499 (662)
.+|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 88888888888888888877654 223333333444444444444444444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-15 Score=158.48 Aligned_cols=414 Identities=8% Similarity=-0.017 Sum_probs=294.9
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
-+...+..++. +...|++++|..+|+++.+. .|....+...++..+.+.|++++|.++|+++.. ..|+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---------~~p~ 78 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---------KVLH 78 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---------TCCC
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------cCCC
Confidence 46678888887 47789999999999999884 577777778888889899999999999999976 5678
Q ss_pred HHHHHHHHHHHhccCCChhHHHH----HHHHHHh-cCCCCC-cccHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 038801 220 IYACNAALEGCCYGLQSVSDAEK----VIETMSV-LGVRPN-ESSFGFLAYLYAL---------KGLQEKIVELESLMNE 284 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~----~~~~m~~-~g~~p~-~~t~~~li~~~~~---------~g~~~~a~~~~~~~~~ 284 (662)
...|...+.......|+.++|.+ +|+.... .|..|+ ...|...+....+ .|+++.|..+|+...+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 88887777644333377777765 7776654 365554 3455556655544 6889999999999988
Q ss_pred cCCCCcHHhHHHHHHHH-------------HhcCChhhHHHHHHH------HHcCCCCCCCCCC--------HHHHHHHH
Q 038801 285 FGFSSQMVFYSSLISGY-------------VKLGNLESASRTILL------CLGGGNMEQSDFS--------KETYCEVV 337 (662)
Q Consensus 285 ~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~------~~~~~~~~~~~p~--------~~~~~~li 337 (662)
.........|....... .+.++++.|..++.+ .++.. ...+.|+ ...|...+
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~-~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRN-APSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSS-SCCCCCC--CCHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccc-cccCCCCCChhHHHHHHHHHHHH
Confidence 32111123343322211 123456667666544 33321 1112333 34666665
Q ss_pred HHHHhc----CCH----HHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh-------cCChH-------HHHHHHHHHH
Q 038801 338 KGFLQN----GNV----KGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN-------LGLSD-------KAHSILDEMN 395 (662)
Q Consensus 338 ~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~ 395 (662)
...... ++. ..+..+|+++....+ -+...|......+.+ .|+++ +|..+|++..
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p----~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 443332 232 477888988876322 244556666666654 69987 8999999998
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 038801 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV--GNYDALIEASITSQDFQSAFSLFRDMREARIYDLK 473 (662)
Q Consensus 396 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 473 (662)
+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.. +.+.
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~ 390 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH 390 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch
Confidence 7323556889999999999999999999999999986 5542 579999999999999999999999998763 2222
Q ss_pred ccHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHH
Q 038801 474 GSYLTIMTG-LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ-FEPN--DQTYLS 549 (662)
Q Consensus 474 ~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ 549 (662)
..|...... +...|+.++|..+|++..+..+ -+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 333322222 3468999999999999887533 246789999999999999999999999999863 2332 347888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
.+......|+.+.+..+++++.+.++
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 88888889999999999999996554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-14 Score=148.94 Aligned_cols=344 Identities=10% Similarity=-0.025 Sum_probs=260.8
Q ss_pred HHHHHHhhc----CCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCCC
Q 038801 182 GFLVDICRK----NSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY----GLQSVSDAEKVIETMSVLGVR 253 (662)
Q Consensus 182 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~g~~ 253 (662)
..|...|.. .+++++|...|++..+. .+...+..+-..|.. . +++++|++.|++..+.|
T Consensus 43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 43 LELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------GYTPAEYVLGLRYMNGEGVP-QDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC--
Confidence 334444544 67788888888877651 244555555555655 5 78888888888877655
Q ss_pred CCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh----cCChhhHHHHHHHHHcCCCCCC
Q 038801 254 PNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK----LGNLESASRTILLCLGGGNMEQ 325 (662)
Q Consensus 254 p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 325 (662)
+...+..|-..|.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|.+..+..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---- 181 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---- 181 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 44555666666666 678888888888887765 45566677777776 678888888888777763
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 038801 326 SDFSKETYCEVVKGFLQ----NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN----LGLSDKAHSILDEMNAC 397 (662)
Q Consensus 326 ~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~ 397 (662)
+...+..+...|.. .++.++|.++|++..+ .+ +...+..+...+.. .+++++|.+.|++..+.
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT---SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 67788888888887 7888888888888765 22 33456666666665 78889999999988876
Q ss_pred CCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHcC
Q 038801 398 GCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS-----QDFQSAFSLFRDMREAR 468 (662)
Q Consensus 398 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~ 468 (662)
| +...+..+...|.. .++.++|...|++..+.| +...+..+...|... +++++|...|++..+.+
T Consensus 253 ~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 253 G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 5 45566677777777 889999999999988764 556777777888776 89999999999998876
Q ss_pred CCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 038801 469 IYDLKGSYLTIMTGLMENH---RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 541 (662)
. ...+..+...|...| +.++|.++|++..+. + +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 327 ~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 327 D---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp C---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred C---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 2 346777777777766 788999999998875 2 45678888888988 899999999999999865
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 038801 542 PNDQTYLSLINGYVT----AEQYFSVLMMWHEIK 571 (662)
Q Consensus 542 p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 571 (662)
+...+..|...|.. .+++++|...|++..
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 56788888888887 899999999999999
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-14 Score=153.71 Aligned_cols=418 Identities=11% Similarity=0.068 Sum_probs=307.7
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHH
Q 038801 68 ITSLETNLHKSLLTNNTDEAWKSFKSLTANS--LFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTV 145 (662)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (662)
+.--...+++|...|.+.+|++++++..-.+ +.-+....+.++..-.+.. ..+..+..... . .. ..
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD-~~Rv~eyI~kL-------d-~~---d~ 1052 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKAD-RTRVMEYINRL-------D-NY---DA 1052 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhC-hhhHHHHHHHh-------h-hc---cH
Confidence 3344567888999999999999999998432 2234566677777776663 23333333221 1 11 24
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 146 HTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
..+...+...|.+++|..+|++... ....+-..+...+++++|.++.+++ -+..+|..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsq 1110 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQ 1110 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHH
Confidence 4578889999999999999999631 1111222233678999999998875 23567889
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcC
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLG 305 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 305 (662)
+-.++... |++++|++.|.+- -|...|..++..|.+.|++++|.+.+....+.. ++....+.++.+|++.+
T Consensus 1111 LAKAql~~-G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1111 LAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHhC-CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 99999997 9999999999663 367778889999999999999999999888765 44444556999999999
Q ss_pred ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChH
Q 038801 306 NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 306 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 385 (662)
++++.... +.. ++...|..+...|...|++++|..+|... ..|..+...+++.|+++
T Consensus 1182 rleele~f----I~~-------~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1182 RLAELEEF----ING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred CHHHHHHH----HhC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHH
Confidence 98864432 332 26678888999999999999999999874 26889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
+|.+.+++. .+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999876 45689999999999999999998877653 3366777899999999999999999998887
Q ss_pred HcCCCCCcccHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCcc------chhhHHHHHHHHHhcCCHHHHHHH------
Q 038801 466 EARIYDLKGSYLTIMTGLME--NHRPELMAAFLDEVVEDPRVEV------KTHDWNSIIHAFCKAGRLEDAKRT------ 531 (662)
Q Consensus 466 ~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~------ 531 (662)
... +.....|+-+...+++ .++..++.++|..-. ++.+ +...|.-++..|.+.|+++.|...
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~ 1383 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 1383 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccH
Confidence 655 4444556555555555 344555555555432 2222 456799999999999999999832
Q ss_pred -------HHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 038801 532 -------LRRMIFLQFEPNDQTYLSLINGYVTAE---------------QYFSVLMMWH 568 (662)
Q Consensus 532 -------~~~m~~~~~~p~~~~~~~li~~~~~~~---------------~~~~a~~~~~ 568 (662)
|++.... ..|...|.-.+..|...+ +++++.++|.
T Consensus 1384 ~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1384 DAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 3333322 335667777777777655 7777777776
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=164.57 Aligned_cols=262 Identities=7% Similarity=-0.027 Sum_probs=151.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
.+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. ..+..+|..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555555555566666666666555543 3345556666666666666666666666665542 113555666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCc----------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLK----------GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
..|++++|...|+++.+.. +.+. ..+..+...+...|++++|..+++++.+..+...+..+|..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666665542 1111 1223345566666667777777766665433323455667777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHc
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVK 598 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 598 (662)
...|++++|.+.|+++.+.. ..+..+|..+..+|...|++++|+..|+++.+ +.|+ ..++..+..++.+
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE---------IQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCchHHHHHHHHHHHH
Confidence 77777777777777776642 22456777777777777777777777777762 2333 4566667777777
Q ss_pred cCchHHHHHHHHHHHhCCCC-------------CCHHhHHHHHHHHhhhhhhhHHHHHH
Q 038801 599 GGFFDAVMQVVEKSQEMKVF-------------VDKWKYKQAFMENHKKLKVAKLRKRN 644 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~-------------p~~~~~~~~~~~~~~~~~~a~~~~~~ 644 (662)
.|++++|...++++.+..+. ...|..+...+...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777777776544322 34555555666666776666665544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-17 Score=163.34 Aligned_cols=298 Identities=11% Similarity=-0.021 Sum_probs=205.4
Q ss_pred cCChhhHHH-HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC
Q 038801 304 LGNLESASR-TILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG 382 (662)
Q Consensus 304 ~g~~~~A~~-~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~ 382 (662)
.|++++|.. .|.+.+...+. ....+...+..+...+.+.|++++|...|+++.+..+ .+...+..+..++...|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEE-NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP----KHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHHHCCCCCCSS-CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHHhcCCC-CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCc
Confidence 356666665 55444433211 1111345566677777777777777777777765322 23445666777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH---------------HHHH
Q 038801 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA---------------LIEA 447 (662)
Q Consensus 383 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~ 447 (662)
++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... +...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 7777777777777654 446677777777777888888888888777765322 1222211 2333
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYD-LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLE 526 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (662)
+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+..+ .+..+|..+...|...|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHcCCHH
Confidence 448889999999999988775221 467788888999999999999999999877422 24568999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC--C-CcccHHHHHHHHHHHHccCchH
Q 038801 527 DAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK--G-IKFEHNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~ 603 (662)
+|...|+++.+.. ..+...+..+..+|.+.|++++|...|+++.+..+..... . ......+|..+..++.+.|+.+
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999998752 2356799999999999999999999999998554422000 0 0112578999999999999999
Q ss_pred HHHHHHHH
Q 038801 604 AVMQVVEK 611 (662)
Q Consensus 604 ~A~~~~~~ 611 (662)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99988864
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=155.92 Aligned_cols=285 Identities=14% Similarity=0.081 Sum_probs=134.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 038801 189 RKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268 (662)
Q Consensus 189 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 268 (662)
.+.|++++|.++++++ ..| .+|..+..++.+. |++++|++.|.+. +|..+|..++.++..
T Consensus 14 ~~~~~ld~A~~fae~~-----------~~~--~vWs~La~A~l~~-g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----------NEP--AVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----------CCh--HHHHHHHHHHHHc-CCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 3678899999999987 233 4999999999998 9999999999653 577799999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038801 269 KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG 348 (662)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 348 (662)
.|++++|+.+++...+. .++..+.+.|+.+|.+.|+++++.+++. .|+..+|+.+...|...|++++
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-----------CC----------------CTTT
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999988877774 4667889999999999999999887651 2577799999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 349 LANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD 428 (662)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (662)
|..+|..+ ..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 141 AKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999875 36889999999999999999999988 3789999999999999999999665554
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-
Q 038801 429 ISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV- 507 (662)
Q Consensus 429 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p- 507 (662)
+. .+......++..|.+.|++++|..+++...... +-....|+.|.-.|++- +++...+.++....+-++.|
T Consensus 203 L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 203 IV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp TT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHH
T ss_pred HH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHH
Confidence 32 233335578899999999999999999988665 44455666666666654 33444444443333334444
Q ss_pred -----chhhHHHHHHHHHhcCCHHHHHHH
Q 038801 508 -----KTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 508 -----~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
+...|..++..|...++++.|...
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 467899999999999999988774
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=184.37 Aligned_cols=154 Identities=9% Similarity=0.085 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
-..+||++|++||+.|+.++|.++|++|.++...|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999998887654568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC------cccHHHHHH
Q 038801 409 TLKAYCKEHR-TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDL------KGSYLTIMT 481 (662)
Q Consensus 409 li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~ll~ 481 (662)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+ +.+++..+++ ..+..|. ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999988 47889999999999999999999988876555 3444444444 3333332 455556666
Q ss_pred HHHhcC
Q 038801 482 GLMENH 487 (662)
Q Consensus 482 ~~~~~~ 487 (662)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-19 Score=186.92 Aligned_cols=166 Identities=10% Similarity=0.112 Sum_probs=135.6
Q ss_pred ccccchHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH
Q 038801 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNA---CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNY 441 (662)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 441 (662)
..-..||+++|++||+.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||++||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc------hhhHHH
Q 038801 442 DALIEASITSQDF-QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK------THDWNS 514 (662)
Q Consensus 442 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~ 514 (662)
|++|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+ +++..+++.. +..|+ ..+...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P--~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP--TFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC--CCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCc--ccCCCCCCcccccchHH
Confidence 9999999999984 789999999999999999999999997666643 3344444432 33332 556666
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHHH
Q 038801 515 IIHAFCKAG---------RLEDAKRTLRRMI 536 (662)
Q Consensus 515 li~~~~~~g---------~~~~A~~~~~~m~ 536 (662)
|.+.|.+.+ ..++-.++|++=.
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 777777655 2455556665443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=157.75 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
+...|..+...+.+.|++++|.+.|+++....+. +...+..+..++...|++++|...|+++.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG----DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3445777777777777777777777777654322 44566677777778888888888888777754 445777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--Cccc
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLD-----------VGNYDALIEASITSQDFQSAFSLFRDMREARIYD--LKGS 475 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~ 475 (662)
+..+|...|++++|...|+++.+. .|+ ...+..+...+...|++++|..+|+++.+.. +. +..+
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 215 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDL 215 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHH
Confidence 888888888888888888887765 222 1223345778888999999999999998875 33 5678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGY 554 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 554 (662)
+..+...+...|++++|...+++..+..+ .+..+|..+..+|...|++++|...|+++.+. .|+ ..+|..+..+|
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 88888999999999999999999887422 24678999999999999999999999999985 454 67999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhcccCCCC----CcccHHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 555 VTAEQYFSVLMMWHEIKRKISTDGQKG----IKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
...|++++|...|+++.+..+...... ...+..+|..+..++...|+.+.+..+.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999996554321111 011357899999999999999998887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=150.68 Aligned_cols=231 Identities=13% Similarity=0.006 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..|..+...+...|++++|..+|+++.+..+. +...+..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 34455555666666666666666665542221 33344455555566666666666666655543 33455555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHcCCCCCccc
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL--------------IE-ASITSQDFQSAFSLFRDMREARIYDLKGS 475 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 475 (662)
..|...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 6666666666666666665554211 22222222 11 2444445555555555554443 223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
+..+...+...|++++|...++++.+..+ .+..+|..+...|...|++++|.+.|+++.+.. ..+...+..+...+.
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 44444445555555555555544443211 123344444444445555555555554444421 112344444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~ 571 (662)
..|++++|.+.++++.
T Consensus 252 ~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4555555555554444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-14 Score=147.95 Aligned_cols=256 Identities=12% Similarity=-0.009 Sum_probs=127.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
.++.++|.+.+++.++.. +.+..++..+...+.. .|++++|.+++++..... ..+...+..+...|...|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence 344444555554444432 2233333333333322 234445555555544432 1133444445555555555555
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHh-------------------cCCHHHHHHHHHHHhhCCCCccchhhHHHHHH
Q 038801 457 AFSLFRDMREARIYDLKGSYLTIMTGLME-------------------NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIH 517 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 517 (662)
|...|++..+.. |.+..++..+...|.. .+..+.|...+++..+..+. +..++..+..
T Consensus 266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~lg~ 342 (472)
T 4g1t_A 266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN--LFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT--TCCCHHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc--hhhhhhhHHH
Confidence 555555554442 2233333333332221 22356777888877664222 3457888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLIN-GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLY 594 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~ 594 (662)
.|...|++++|.+.|++..+....+.. ..+..+.. .....|++++|+..|++.. .+.|+.....
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---------~i~~~~~~~~---- 409 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---------KINQKSREKE---- 409 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---------HSCCCCHHHH----
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------hcCcccHHHH----
Confidence 999999999999999999875332222 12333332 2346799999999999988 3445543222
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH-HHhhhC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA-FKNWAG 659 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~~ 659 (662)
+....+.+++++..+.++. +..+..+...+...|+.+.|...+++++++.|... -..|.|
T Consensus 410 -----~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 -----KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2234455666666555554 67888877788888999999999999999887653 444544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-15 Score=148.31 Aligned_cols=278 Identities=14% Similarity=0.031 Sum_probs=220.7
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
+...+..+...+...|++++|..+|.+.++..+. +...|..+..++...|++++|.+.++++.+..+. +..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~ 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----DIA 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----CHH
Confidence 4566778889999999999999999999887433 7889999999999999999999999999874332 456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhCCC
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPT--------------LK-AYCKEHRTAEATQLVMDISSSGL 434 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~ 434 (662)
++..+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+...
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 77788999999999999999999999874 3344455444 33 47788999999999999988742
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 435 QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+..+ .+...|..
T Consensus 170 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~ 245 (327)
T 3cv0_A 170 -NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVMYN 245 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHH
Confidence 267889999999999999999999999999875 55667899999999999999999999999887522 24668899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLY 594 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~ 594 (662)
+..+|...|++++|.+.|+++.+. .|+...- .+ ......+..++..+..
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~---------~~--------------------~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTP---------TG--------------------EASREATRSMWDFFRM 294 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC----------------------------------CCTHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCccccc---------cc--------------------cchhhcCHHHHHHHHH
Confidence 999999999999999999988753 2221000 00 0011224567788888
Q ss_pred HHHccCchHHHHHHHHHH
Q 038801 595 ALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m 612 (662)
++.+.|++++|..++++.
T Consensus 295 ~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHTTCC
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 999999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-14 Score=148.37 Aligned_cols=397 Identities=8% Similarity=-0.079 Sum_probs=226.5
Q ss_pred CcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC-ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhc----
Q 038801 176 PFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK-PNIYACNAALEGCCYGLQSVSDAEKVIETMSVL---- 250 (662)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~---- 250 (662)
.....++.|..++...|++++|++.|++..++.......... ....+|+.+-..|... |++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhc
Confidence 345567778888888899999999998887654332211123 3456888888888887 9999999998887542
Q ss_pred -C-CCCC-cccHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHH---HHhcCChhhHHHHHHHHHcCC
Q 038801 251 -G-VRPN-ESSFGFLAYLYALK--GLQEKIVELESLMNEFGFSSQ-MVFYSSLISG---YVKLGNLESASRTILLCLGGG 321 (662)
Q Consensus 251 -g-~~p~-~~t~~~li~~~~~~--g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~ 321 (662)
+ ..++ ..++.....++... +++++|.+.|+...+.. |+ ...+..+..+ +...++.++|++.+.+.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1111 22344443344443 45788888888877754 43 4444444433 345567777777777766643
Q ss_pred CCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038801 322 NMEQSDFSKETYCEVVKGFLQ----NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397 (662)
Q Consensus 322 ~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 397 (662)
+. +...+..+...+.. .|+.++|.+.+++.....+ .+...+..+...+...|++++|...+++..+.
T Consensus 206 p~-----~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 206 PD-----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP----GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp SS-----CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cc-----chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 22 45555555444443 3456677777777654322 23344556666777777777777777776665
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHH
Q 038801 398 GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYL 477 (662)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 477 (662)
. +.+..++..+..+|...+.... ... ...........+..++|...|++..+.. +.+..++.
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 3 3344555555554432211100 000 0000000111234677888888887765 55667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch--hhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT--HDWNSIIH-AFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
.+...+...|++++|+..|++..+. ...+.. ..+..+.. .+...|+.++|+..|++..+. .|+.......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH----
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH----
Confidence 8999999999999999999988764 222221 12233322 235789999999999999874 6665332222
Q ss_pred HhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHh
Q 038801 555 VTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWK 623 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~ 623 (662)
...+.++++... ...| +..+|..+..++...|++++|++.+++..+.+.. |+..+
T Consensus 412 -----~~~l~~~~~~~l---------~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 412 -----KDKLQKIAKMRL---------SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp -----HHHHHHHHHHHH---------HHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred -----HHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 233445555555 1223 4578999999999999999999999999887654 55443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=146.49 Aligned_cols=254 Identities=9% Similarity=-0.033 Sum_probs=192.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCccccc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR--SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC 414 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 414 (662)
|+.....|++.+|+..+++.. ...|+. .....+..++...|+++.|...++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 455667899999999887753 334443 2334567889999999998876644 23667788888888999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038801 415 KEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 493 (662)
..|+.++|.+.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..+...+.+.|+.++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999888765564 45566667888999999999999887 566678888888999999999999
Q ss_pred HHHHHHhhCCCCccchh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTH---DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
+.++++.+.. |+.. .....+..+...|++++|..+|+++.+. ...+...|+.+..++.+.|++++|...++++
T Consensus 151 ~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988752 4421 1122334444558899999999999886 2446678888999999999999999999998
Q ss_pred HHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHH-HHHHHHHHHhCCCC
Q 038801 571 KRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDA-VMQVVEKSQEMKVF 618 (662)
Q Consensus 571 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 618 (662)
. ...| +..++..++..+...|+.++ +.++++++.+.++.
T Consensus 227 l---------~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 227 L---------DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp H---------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred H---------HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 8 2344 45678888888888888876 56888888776665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-15 Score=141.57 Aligned_cols=274 Identities=10% Similarity=0.040 Sum_probs=200.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSK--ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGII 375 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll 375 (662)
|+-....|++..|+..+.+ .. ...|+. .....+.++|...|+++.|+..++. .-.|+..++..+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~-~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la 72 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQR-VK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFA 72 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHH-SC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHH
Confidence 4556678899999876432 21 233332 3556678899999999998876533 2345566677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSV-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
..+...++.++|.+.++++...+..| +...+..+..+|...|++++|++.+++ ..+...+..++..|.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 88888889999999999988876434 566677777889999999999999887 34677888888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIM----TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
++|.+.|+++.+.. |+. +...+. ..+...|++++|..+|+++.+.. ..+...|+.+..++.+.|++++|.+
T Consensus 147 ~~A~~~l~~~~~~~--p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999998874 442 233333 33444588999999999988853 3456788889999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHH
Q 038801 531 TLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFS-VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 531 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
.|++..+. .| +..++..++..+...|+.++ +.++++++. .+.|+... +.....+.+.++++..-
T Consensus 222 ~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~---------~~~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 222 VLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK---------DAHRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------HHCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------HhCCCChH---HHHHHHHHHHHHHHHHH
Confidence 99998875 45 55788888888888888865 578888888 45566532 22335566666665543
Q ss_pred H
Q 038801 609 V 609 (662)
Q Consensus 609 ~ 609 (662)
|
T Consensus 288 ~ 288 (291)
T 3mkr_A 288 Y 288 (291)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-15 Score=143.62 Aligned_cols=282 Identities=11% Similarity=0.028 Sum_probs=117.4
Q ss_pred hhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCch
Q 038801 80 LTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAA 159 (662)
Q Consensus 80 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 159 (662)
..|+.++|.++++++ +++.+|+.+..++.+.|+..++.+.|.. .+|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik----------a~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK----------ADDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc----------CCCHHHHHHHHHHHHhCCCHH
Confidence 357788999999988 3445899999999999987777777632 256678889999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhH
Q 038801 160 PAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSD 239 (662)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 239 (662)
+|+..++...+. .++ ....+.|+.+|.+.|+++++.++++ .|+..+|+.+...|... |++++
T Consensus 79 eAi~yl~~ark~--~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~--------------~pn~~a~~~IGd~~~~~-g~yee 140 (449)
T 1b89_A 79 ELVKYLQMARKK--ARE-SYVETELIFALAKTNRLAELEEFIN--------------GPNNAHIQQVGDRCYDE-KMYDA 140 (449)
T ss_dssp ---------------------------------CHHHHTTTTT--------------CC-----------------CTTT
T ss_pred HHHHHHHHHHHh--Ccc-chhHHHHHHHHHHhCCHHHHHHHHc--------------CCcHHHHHHHHHHHHHc-CCHHH
Confidence 999977777663 222 4446678888889999888876664 35667899999988887 99999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHc
Q 038801 240 AEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLG 319 (662)
Q Consensus 240 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 319 (662)
|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999876 36888889999999999999888877 3678888999999999999988665332
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh--cCChHHHHHHHHHHHHC
Q 038801 320 GGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN--LGLSDKAHSILDEMNAC 397 (662)
Q Consensus 320 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~ 397 (662)
+...+.....++..|.+.|.+++|..+++....++ +.....|+-+.-++++ .+++.+..+.|.. +.
T Consensus 203 ------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~i 270 (449)
T 1b89_A 203 ------IVVHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKPQKMREHLELFWS--RV 270 (449)
T ss_dssp ------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TS
T ss_pred ------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--Hh
Confidence 11244445568888888889998888888875432 1223344444444443 3344444444431 11
Q ss_pred CCCC------ChhhHHHHHHHHHHcCCHHHHHHH
Q 038801 398 GCSV------GLGVYVPTLKAYCKEHRTAEATQL 425 (662)
Q Consensus 398 ~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 425 (662)
+++| +...|.-++..|.+-++++.|...
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 2222 356777777778888888777653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-13 Score=128.56 Aligned_cols=221 Identities=8% Similarity=-0.026 Sum_probs=125.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----hhhHHHHHH
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ--LD----VGNYDALIE 446 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~~~li~ 446 (662)
.+...+...|++++|...|+++.+.. .+..++..+..+|...|++++|...|++..+.... ++ ...|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 34444444444444544444444443 34445555555555555555555555554433110 01 345555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHH
Q 038801 447 ASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLE 526 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (662)
.|...|++++|...|++..+.. |+ ...+...|++++|...++++.... ..+...|..+...+...|+++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHH
Confidence 5556666666666666555542 11 133445556666666666665531 123445666777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHH
Q 038801 527 DAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAV 605 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 605 (662)
+|...|+++.+.. ..+...|..+...+...|++++|+..++++.+ ..| +...+..+..++.+.|++++|
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---------~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---------KDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------hCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777642 22456677777777777777777777777762 223 345666677777777777777
Q ss_pred HHHHHHHHhCC
Q 038801 606 MQVVEKSQEMK 616 (662)
Q Consensus 606 ~~~~~~m~~~~ 616 (662)
.+.++++.+..
T Consensus 227 ~~~~~~a~~~~ 237 (258)
T 3uq3_A 227 LETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77777765443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-13 Score=125.77 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----h
Q 038801 330 KETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC--SVG----L 403 (662)
Q Consensus 330 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~ 403 (662)
...|..+...+...|++++|++.|+++.+. . .+...+..+..++...|++++|.+.+++..+..- .++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL---H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 456778888888999999999999988763 2 5667788888889999999999999998877431 112 5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
.++..+..+|.+.|++++|...|++..+. .|+. ..+...|++++|...++++.... +.+...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 78888999999999999999999998875 3442 34666788999999999988864 44556788888899
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 563 (662)
...|++++|...+++..+..+ .+..+|..+..+|...|++++|...|++..+.. ..+...|..+..++...|++++|
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999887532 246788999999999999999999999999853 23467899999999999999999
Q ss_pred HHHHHHHHHh
Q 038801 564 LMMWHEIKRK 573 (662)
Q Consensus 564 ~~~~~~m~~~ 573 (662)
...++++.+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999843
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=125.26 Aligned_cols=243 Identities=9% Similarity=0.015 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD--VGNYDALIEA 447 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~ 447 (662)
.+......+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666777778888888888777764 34555777777788888888888888888877432222 2237778888
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC--CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 45556788888888888888888888888877522 234567777734444569999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchH
Q 038801 528 AKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 603 (662)
|.+.|+++.+. .|+ ...+..+..++...|+ +++|...++++.+........+...-..+|..+...+.+.|+++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999985 454 5788888888888888 88899999999865432111110001267888899999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 038801 604 AVMQVVEKSQEMKVF 618 (662)
Q Consensus 604 ~A~~~~~~m~~~~~~ 618 (662)
+|.+.++++.+..+.
T Consensus 239 ~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 239 KADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=123.84 Aligned_cols=198 Identities=11% Similarity=0.012 Sum_probs=121.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 401 VGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
++...+..+...+.+.|++++|...|++..+... .+...+..+..++.+.|++++|+..|++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3445555566666666666666666666665421 144556666666666666666666666666554 44445556666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038801 481 TGLMEN-----------HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS 549 (662)
Q Consensus 481 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 549 (662)
..+... |++++|+..+++..+..+- +...|..+..+|...|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 666666 7777777777777663221 34567777788888888888888888888765 56777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+..++...|++++|+..|+++. ...| +...+..+..++.+.|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al---------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKAL---------EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---------HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888887 2334 34667777778888888888888887754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-12 Score=120.31 Aligned_cols=186 Identities=8% Similarity=0.026 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
.+..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444445555555555555555555552 233444455555555 555555555555555543 444455555
Q ss_pred HHHHc----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccchhhHHHHHH
Q 038801 446 EASIT----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME----NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIH 517 (662)
Q Consensus 446 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 517 (662)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|..++++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 55555 555555555555555443 22334444444444 44444444444444432 1 2223333444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 038801 518 AFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIK 571 (662)
Q Consensus 518 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 571 (662)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 4443 444444444444444321 23334444444444 444444444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-13 Score=126.04 Aligned_cols=245 Identities=9% Similarity=-0.050 Sum_probs=142.7
Q ss_pred CChHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 382 GLSDKAHSILDEMNACGC---SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
|++++|...++++.+... +.+..++..+...|...|++++|...|+++.+... .+...|..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666655421 11345556666666666666666666666665421 14556666666666666666666
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 459 SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
..|+++.+.. +.+...+..+...+...|++++|...++++.+.. |+...+...+..+...|++++|...+++....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6666666653 3344566666666666666666666666665532 22222333334445667788888888766654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc--cc-HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK--FE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 539 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
. .++...+ .++..+...++.++|+..++++. ..... |+ ..++..+...+.+.|++++|...++++.+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADA-------TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC-------CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh-------cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2333333 35566666777777777777776 22111 11 466777777788888888888888887665
Q ss_pred CCCCCHHhHHHHHHHHhhhhhhhHHHH
Q 038801 616 KVFVDKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 616 ~~~p~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
+ |+.+......+...|+++.|...+
T Consensus 245 ~--p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 N--VHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--CTTCHHHHHHHHHHHHHHHC----
T ss_pred C--chhHHHHHHHHHHHHHHHhhHHHH
Confidence 4 433343344455556666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-12 Score=132.58 Aligned_cols=378 Identities=11% Similarity=0.005 Sum_probs=244.8
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ---EKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
-..+.+. |++++|+++|++..+.| +...+..+-..+...|+. ++|...|+...+. +...+..|...+..
T Consensus 10 a~~~~~~-g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 10 ANEALKR-GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3445555 99999999999998876 333444455566667777 8999999988754 55566667765555
Q ss_pred cC-----ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhCCCCcccccchHHHHH
Q 038801 304 LG-----NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG---LANLIIEAQKLEPSGIVVDRSVGFGII 375 (662)
Q Consensus 304 ~g-----~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~~~~~ll 375 (662)
.| +.++|...|.+..+.. +...+..|...|...+..++ +.+.+..... .+ +......+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~---~g---~~~a~~~Lg 148 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA---AG---YPEAGLAQV 148 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH---HT---CTTHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---CC---CHHHHHHHH
Confidence 55 7789999999888864 44477778888887665444 4444444433 22 244566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH---RTAEATQLVMDISSSGLQLDVGNYDALIEASITS- 451 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~- 451 (662)
..|...+.++++......+.+.....+...+..|...|.+.| +.++|.+.|++..+.| .++...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 778777755555444333333222233448888999999999 9999999999999987 33555556677777655
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC--
Q 038801 452 ---QDFQSAFSLFRDMREARIYDLKGSYLTIMTG-L--MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG-- 523 (662)
Q Consensus 452 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-- 523 (662)
+++++|...|++.. .| +...+..|... + ...++.++|..+|++..+. + +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCC
Confidence 79999999999987 33 44566666666 3 4688999999999998875 3 4556777887777 56
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 524 ---RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 524 ---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
++++|.+.|++.. .| +...+..|...|.. ..++++|...|++.. +.|. ......|...|
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-------~~g~---~~A~~~Lg~~y 364 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA-------RNGQ---NSADFAIAQLF 364 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH-------TTTC---TTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-------hhCh---HHHHHHHHHHH
Confidence 9999999999888 33 56677777777766 449999999999999 6664 33445566666
Q ss_pred Hc----cCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHH---hhhhhhhHHHHHHHHhhHHH
Q 038801 597 VK----GGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMEN---HKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 597 ~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~---~~~~~~a~~~~~~~~~l~p~ 651 (662)
.. ..+.++|..+++...+.|.. +.. ..+..+.. ..+++.+..+.++.++-.+.
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~-~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDTP-EAN-DLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCCH-HHH-HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCCH-HHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 53 56899999999999888854 222 22333322 24566677777666665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-13 Score=128.35 Aligned_cols=247 Identities=9% Similarity=-0.083 Sum_probs=147.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|++++|++.|+++.+..+..-+.+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666665542111111133445556666666677777777666666653 34566667777777777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 038801 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED 502 (662)
Q Consensus 423 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 502 (662)
...|++..+.. ..+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|+.++|...+.+....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777766652 1245666677777777777777777777776653 33233344444455567777777777666553
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q 038801 503 PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTD 577 (662)
Q Consensus 503 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 577 (662)
. .++...+ .++..+...++.++|.+.+++..+. .|+ ...|..+...|...|++++|...|+++.
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------ 242 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV------ 242 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Confidence 2 2222233 3566666677777777777777653 221 3567777788888888888888888887
Q ss_pred CCCCCcccHHHHHHHHHHHHccCchHHHHHHH
Q 038801 578 GQKGIKFEHNLVDAFLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 578 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
...|+. +.....++...|++++|++.+
T Consensus 243 ---~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ---ANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---TTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred ---hCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 333432 222344566777777777665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-13 Score=121.44 Aligned_cols=91 Identities=11% Similarity=-0.066 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
.|..+..++...|++++|+..|++..+.. .+...+..+...+...|++++|...+++..+..+ .+...+..+...+
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~ 195 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence 33333334444444444444444443333 2333333333444444444444444444333211 1223344444444
Q ss_pred HhcCCHHHHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRR 534 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~ 534 (662)
.+.|++++|.+.|++
T Consensus 196 ~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 196 LLKGKAEEAARAAAL 210 (217)
T ss_dssp TC-------------
T ss_pred HHccCHHHHHHHHHH
Confidence 444444444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=123.12 Aligned_cols=242 Identities=12% Similarity=-0.002 Sum_probs=121.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHH
Q 038801 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~ 376 (662)
....+...|++++|...|.+.++..+. +...|..+..++...|++++|++.+++... .+.........|..+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-----SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 334444445555555554444443211 233444444455555555555555554433 11000001112344455
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQ 455 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 455 (662)
.+...|++++|.+.|++..+.. +.+..++..+...|...|++++|...|++..+. .| +...|..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555432 233455555555666666666666666555544 22 3344444442223334666
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccc------hhhHHHHHHHHHhcCCHH
Q 038801 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHR---PELMAAFLDEVVEDPRVEVK------THDWNSIIHAFCKAGRLE 526 (662)
Q Consensus 456 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~ 526 (662)
+|...|+++.+.. +.+...+..+...+...++ .++|...+++..+.....|+ ..+|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 6666666665543 3333445555555555555 55555555555443212222 246777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHH
Q 038801 527 DAKRTLRRMIFLQFEPND-QTYLSL 550 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~-~~~~~l 550 (662)
+|.+.|++..+. .|+. ..+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--CccHHHHHHHh
Confidence 888888888874 4543 344444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-12 Score=119.08 Aligned_cols=203 Identities=11% Similarity=-0.042 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
..+..+...+...|++++|...|+++.+.. ..+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555566666666666666666665542 1245556666666666666666666666666553 33445566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS 562 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 562 (662)
...|++++|.++++++.+ .+..| +...+..+...|...|++++|.+.|+++.+.. ..+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665 12233 34567777777788888888888888777642 2245677777778888888888
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|...++++. .. ...+...+..+...+.+.|++++|.++++++.+..+.
T Consensus 194 A~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFA-------QG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHH-------TT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-------Hh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 888888877 21 1224456667777777888888888888887665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-11 Score=116.06 Aligned_cols=228 Identities=10% Similarity=-0.022 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT----SQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
...+..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444555555555566666666665555521 33445555555555 556666666666555554 3345555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038801 479 IMTGLME----NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSL 550 (662)
Q Consensus 479 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 550 (662)
+...|.. .++.++|..+|++..+. + +...+..+...|.. .|++++|.+.|++..+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 5555555 55666666666555553 1 33445555555555 556666666666555543 34445555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc----cCchHHHHHHHHHHHhCCCCCCHH
Q 038801 551 INGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK----GGFFDAVMQVVEKSQEMKVFVDKW 622 (662)
Q Consensus 551 i~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~ 622 (662)
...|.. .+++++|+..|++.. +.+ +...+..+...+.+ .|++++|.+.+++..+.+. ++.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~-------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~ 221 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKAC-------DLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGC 221 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHH-------HTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHH-------HCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHH
Confidence 555554 556666666665555 222 23444455555555 5666666666655555443 3333
Q ss_pred hHHHHHHHH----hhhhhhhHHHHHHHHhhHHHHHH
Q 038801 623 KYKQAFMEN----HKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 623 ~~~~~~~~~----~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
..+...+.. .++.+.|...++++.++.|.++.
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 333333333 45555566666666665555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=137.88 Aligned_cols=242 Identities=13% Similarity=-0.006 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-Chhh
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNAC----G-CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGN 440 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~ 440 (662)
+..+...+...|++++|...+++..+. + ......++..+...|...|++++|...|++..+. +-.+ ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 333444444444444444444444331 1 0112344555555556666666666655554432 1011 2335
Q ss_pred HHHHHHHHHcCCC-----------------HHHHHHHHHHHHHc----CC-CCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 441 YDALIEASITSQD-----------------FQSAFSLFRDMREA----RI-YDLKGSYLTIMTGLMENHRPELMAAFLDE 498 (662)
Q Consensus 441 ~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 498 (662)
+..+...|...|+ +++|...+++..+. +. +....++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5555566666666 66666666655432 10 11223555666667777777777777766
Q ss_pred HhhCCCC----ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 499 VVEDPRV----EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE-PN----DQTYLSLINGYVTAEQYFSVLMMWHE 569 (662)
Q Consensus 499 ~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~ 569 (662)
..+...- .....++..+...|...|++++|.+.+++..+.... .+ ..++..+...|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5542111 111236888889999999999999999888763110 11 35788889999999999999999999
Q ss_pred HHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 570 IKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 570 m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
..+..+.. +..+ ...++..+..++.+.|++++|.+++++..+.
T Consensus 329 al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQEL---GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 98554421 2222 2357888889999999999999999998654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-12 Score=116.03 Aligned_cols=204 Identities=14% Similarity=-0.020 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
...+..+...+...|++++|...|+++.+.. ..+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555666666666666666555542 1134555555666666666666666666665543 3344455555566
Q ss_pred HHhc-CCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038801 483 LMEN-HRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 483 ~~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 560 (662)
+... |++++|...++++.+. +..| +...+..+..++...|++++|...++++.+.. ..+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 6666 6666666666665551 2222 24566677777777777777777777777642 22356777777777777777
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
++|...++++.+ ..-..+...+..+...+.+.|+.++|..+++.+.+..+
T Consensus 164 ~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQS-------RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH-------hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 777777777772 11112345556666666777777777777777765443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.5e-12 Score=117.60 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..|..+...+...|++++|.+.|+++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP----SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 4455555556666666666666666554221 123345555566666666666666666665543 33455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP 489 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 489 (662)
..|...|++++|.++|+++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 66777777777777777666522233 34556666666777777777777777766654 33445566666666666666
Q ss_pred HHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 490 ELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 490 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
++|...++++.+..+ .+...+..+...+...|+.++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666655322 23445666677777777777777777777664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.1e-13 Score=134.07 Aligned_cols=283 Identities=11% Similarity=-0.014 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-Ch
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC----GCSV-GL 403 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 403 (662)
....+......+...|++++|...|+++....+.....-...+..+...+...|++++|...+++.... +..+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444555556666666777777777666655322211101234555666666677777777766665432 1111 24
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCC--------------------HHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-LD----VGNYDALIEASITSQD--------------------FQSAF 458 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~ 458 (662)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 56667777777788888888777766543100 11 3467777777778888 88888
Q ss_pred HHHHHHHHc----C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CC-ccchhhHHHHHHHHHhcCCHHHHH
Q 038801 459 SLFRDMREA----R-IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP---RV-EVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 459 ~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
..+++..+. + .+....++..+...+...|++++|...+++..+.. +. .....+|..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 887776542 1 11123457777788888888888888888766421 11 111347888899999999999999
Q ss_pred HHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchH
Q 038801 530 RTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 530 ~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 603 (662)
..+++..+... .++ ..++..+...|...|++++|...+++..+..+. .+..+. ..++..+...+.+.|+++
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99998875310 112 357888899999999999999999999865442 222222 467888889999999999
Q ss_pred HHHHHHHHHHh
Q 038801 604 AVMQVVEKSQE 614 (662)
Q Consensus 604 ~A~~~~~~m~~ 614 (662)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-11 Score=124.22 Aligned_cols=378 Identities=11% Similarity=0.006 Sum_probs=245.0
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCCh---hHHHHHHHHHHhcCCCCCcccHH
Q 038801 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSV---SDAEKVIETMSVLGVRPNESSFG 260 (662)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~t~~ 260 (662)
+...+.+.|++++|.+.|++..+. + .++ .+..+-..+... |+. ++|++.|++..+. +...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-------g-~~~--A~~~Lg~~y~~~-g~~~d~~~A~~~~~~A~~~----~~~A~~ 73 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-------G-YSE--AQVGLADIQVGT-RDPAQIKQAEATYRAAADT----SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------T-CCT--GGGTCC---------------------------------CHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-------C-CHH--HHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhC----CHHHHH
Confidence 455566789999999999998663 1 222 233333344444 777 8999999998753 555566
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChh---hHHHHHHHHHcCCCCCCCCCCHHH
Q 038801 261 FLAYLYALKG-----LQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLE---SASRTILLCLGGGNMEQSDFSKET 332 (662)
Q Consensus 261 ~li~~~~~~g-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~p~~~~ 332 (662)
.+...+...+ +.++|...|+...+.|. ++ .+..|...|...+..+ ++.+.+....+.. +...
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-------~~~a 143 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-------YPEA 143 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-------CTTH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-------CHHH
Confidence 6666455544 78899999999998763 32 6667777887766544 3444444443332 5667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCChhhHHHH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG---LSDKAHSILDEMNACGCSVGLGVYVPT 409 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l 409 (662)
+..+...|...+.++++.+......+ .-...+...+..+...|...| +.++|.+.|++..+.| .++...+..+
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~---~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICK---AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHH---HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 77888888888866655554333322 111123337778888888899 9999999999999988 5666666777
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--HcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 410 LKAYCKE----HRTAEATQLVMDISSSGLQLDVGNYDALIEA-S--ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 410 i~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
...|... +++++|...|++.. . -+...+..+... + ...+++++|...|++..+.| +...+..|...
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 7777665 79999999999987 3 256677777776 4 56899999999999999887 44567777777
Q ss_pred HHhcC-----CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038801 483 LMENH-----RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553 (662)
Q Consensus 483 ~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 553 (662)
|. .| +.++|..+|.+.. . + +...+..|...|.. ..+.++|...|++..+.|. | .....|...
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~ 363 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQL 363 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHH
Confidence 76 55 8999999999987 2 3 44567777777766 3499999999999998763 3 345555666
Q ss_pred HHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 554 YVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 554 ~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
|.. ..+.++|..+|+... +.|......... .+......++.++|..+.++..+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~-------~~g~~~a~~~l~-~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAK-------AQDTPEANDLAT-QLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHH-------TTCCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHH-------HCCCHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHH
Confidence 654 468999999999999 677543222222 22333345567777777776543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=129.56 Aligned_cols=277 Identities=12% Similarity=-0.009 Sum_probs=161.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCChhhHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC----GC-SVGLGVYVPTL 410 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li 410 (662)
....+...|++++|...|+++.+..+.....-...+..+...+...|++++|.+.+++..+. +. .....++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33444455555555555555544221110000233444455555555555555555544331 11 11234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCC--------------------HHHHHHHHHHHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQ-LD----VGNYDALIEASITSQD--------------------FQSAFSLFRDMR 465 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 465 (662)
..|...|++++|...+++..+.... ++ ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666667777776666665432100 11 2355666666666666 667766666654
Q ss_pred Hc----C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC---C-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 466 EA----R-IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP---R-VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 466 ~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
+. + .+.....+..+...+...|++++|...+++..+.. + ......++..+...|...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1 11112355566666777777777777777655321 1 11113367788888888999999999888877
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHH
Q 038801 537 FLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 537 ~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
+... ..+ ..++..+...+...|++++|...++++.+..+.. +..+ ...++..+...+.+.|++++|.+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5210 111 3577788888888999999999998887544321 2122 23577778888889999999999998
Q ss_pred HHHhC
Q 038801 611 KSQEM 615 (662)
Q Consensus 611 ~m~~~ 615 (662)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=132.00 Aligned_cols=231 Identities=10% Similarity=-0.031 Sum_probs=144.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC----C-CCChhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACG----C-SVGLGVYVPTLKAYCKEHR--------------------TAEATQL 425 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~ 425 (662)
+..+...+...|++++|...+++..+.. . .....++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3334445555555555555555443321 0 0012355566666666666 6666666
Q ss_pred HHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CC----CcccHHHHHHHHHhcCCHHHHHHH
Q 038801 426 VMDISSS----GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARI-YD----LKGSYLTIMTGLMENHRPELMAAF 495 (662)
Q Consensus 426 ~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~ 495 (662)
+++..+. +..+ ...++..+...|...|++++|...+++..+... .+ ...++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6654332 1111 134566667777777777777777777664311 01 112566677777788888888877
Q ss_pred HHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 038801 496 LDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQTYLSLINGYVTAEQYFSVLMM 566 (662)
Q Consensus 496 ~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 566 (662)
+++..+. .+..+ ...++..+...|...|++++|.+.+++..+. +-.+. ..++..+...|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776542 11111 1457888999999999999999999988763 11111 35788899999999999999999
Q ss_pred HHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHH
Q 038801 567 WHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 567 ~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 604 (662)
+++..+..+. .+..+. ..++..+...+...|+...
T Consensus 330 ~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 330 AEKHLEISRE---VGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHH---hcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9998865552 233333 3677777778877777643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=113.19 Aligned_cols=208 Identities=10% Similarity=-0.001 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
+...|..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3445666666666666666666666666543221 23445556666666666666666666666543 335566666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 409 TLKAYCKE-HRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 409 li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
+...|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 66777777 777777777777666222232 4556666667777777777777777766653 33445566666666666
Q ss_pred CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038801 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ 545 (662)
Q Consensus 487 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (662)
|++++|..++++..+..+ ..+...+..+...+...|+.+.|..+++.+.+. .|+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~ 216 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSE 216 (225)
T ss_dssp TCHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCH
Confidence 666666666666655311 023445566666666777777777777776643 45443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=123.15 Aligned_cols=245 Identities=8% Similarity=-0.013 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL-SDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
.|+.+...+.+.|++++|++.|+++..+.+. +...|..+..++...|+ +++|+..|++++... +.+...|..+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3444444455555555555555555443222 23334445555555554 666666665555543 33455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME-NHRP 489 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~ 489 (662)
.++.+.|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++++.. +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 6666666666666666666654211 45566666666666666666666666666654 4444566666666666 4443
Q ss_pred HHH-----HHHHHHHhhCCCCccchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---
Q 038801 490 ELM-----AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG--RLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAE--- 558 (662)
Q Consensus 490 ~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~--- 558 (662)
++| +..+++..+..+ -+...|+.+...+...| ++++|.+.++++ + ..| +...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P--~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccc
Confidence 555 366666655311 13557888888888877 689999999888 3 344 4578889999998864
Q ss_pred ------CHHHHHHHHHHH-HHhhcccCCCCCcccH-HHHHHHHHHHH
Q 038801 559 ------QYFSVLMMWHEI-KRKISTDGQKGIKFEH-NLVDAFLYALV 597 (662)
Q Consensus 559 ------~~~~a~~~~~~m-~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 597 (662)
..++|+++++++ . .+.|.. ..|..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~---------~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAK---------EKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHH---------TTCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH---------HhCchhHHHHHHHHHHHH
Confidence 358999999999 6 455655 45555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-09 Score=114.51 Aligned_cols=437 Identities=8% Similarity=-0.044 Sum_probs=248.7
Q ss_pred CCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCc---HHHHHHHHHHHHHhhhhhhcCC
Q 038801 139 LLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSN---FVAFLKVFEECCRIALDENLDF 215 (662)
Q Consensus 139 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~ 215 (662)
+.|..++..++..+...+.++.+..+|+.+... .|....+....+..-.+.++ ++.+..+|++....
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~-------- 132 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK-------- 132 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS--------
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh--------
Confidence 357888999999998889999999999999985 46666666666666677888 99999999999762
Q ss_pred C--CccHHHHHHHHHHHhccCCCh--------hHHHHHHHHHHh-cCC-CCCc-ccHHHHHHHHH---------HcCCHH
Q 038801 216 M--KPNIYACNAALEGCCYGLQSV--------SDAEKVIETMSV-LGV-RPNE-SSFGFLAYLYA---------LKGLQE 273 (662)
Q Consensus 216 ~--~~~~~~~~~ll~~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~~-~t~~~li~~~~---------~~g~~~ 273 (662)
. .|++..|...+.-..+. ++. +.+.++|+.... .|. .++. ..|...+.-.. ..++++
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHh-cccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 2 38999998888766554 443 334577877544 466 5654 45555554332 234577
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038801 274 KIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLI 353 (662)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 353 (662)
.+..+|+.++......-..+|...... .+.-+...+.+++.+ ...+++.|...+
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~f-e~~~~~~~a~~~~~e-------------------------~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQW-EQDVNQLTARRHIGE-------------------------LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHH-HHHHCTTTHHHHHHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHH-HHhcCcchHHHHHHH-------------------------hhHHHHHHHHHH
Confidence 888899888863222122333322211 111001111111110 011222333333
Q ss_pred HHHHHhCCCCc----c-----------c-cc-------chHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCh
Q 038801 354 IEAQKLEPSGI----V-----------V-DR-------SVGFGIISACVNLG-------LSDKAHSILDEMNACGCSVGL 403 (662)
Q Consensus 354 ~~m~~~~~~~~----~-----------~-~~-------~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~ 403 (662)
.++..+.. ++ + | .. ..|...+.---..+ ..+.+..+|++.+.. ++-+.
T Consensus 266 ~e~~~~~~-~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 266 QDWLNITK-GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHTT-TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHH-hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 33322111 10 0 0 00 11111221111111 112344566666554 24466
Q ss_pred hhHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC----------CCC-
Q 038801 404 GVYVPTLKAYCKEHRTAEAT-QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR----------IYD- 471 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~- 471 (662)
..|-..+..+...|+.++|. .+|++.... +..+...|-..+...-+.|++++|.++|+++.+.. .+.
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 67777777777777777775 777777654 22344556666777777788888888887776531 111
Q ss_pred ----------CcccHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 038801 472 ----------LKGSYLTIMTGLMENHRPELMAAFLDEVVED-PRVEVKTHDWNSIIHAFCKA-GRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 472 ----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~ 539 (662)
....|...+....+.|..+.|..+|.+..+. ....+. .|-..+..-.+. ++.+.|.++|+..++.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 1124556666666667777777777777664 222222 232222222233 3477777777777764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc--cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 540 FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF--EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 540 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
+.-+...|...++.....|+.+.|..+|++.. .....+ ....|...+..-.+.|+.+.+.++.+++.+.-+
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal-------~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSI-------DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT-------TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22234455566666666777777888777777 222211 235667777766777777777777777776666
Q ss_pred CCCHHhHH
Q 038801 618 FVDKWKYK 625 (662)
Q Consensus 618 ~p~~~~~~ 625 (662)
..+....+
T Consensus 573 ~~~~~~~f 580 (679)
T 4e6h_A 573 EVNKLEEF 580 (679)
T ss_dssp TCCHHHHH
T ss_pred CCcHHHHH
Confidence 54443333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=121.88 Aligned_cols=251 Identities=7% Similarity=-0.042 Sum_probs=127.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC-hhhHHHHHHHHHcCCCCCCCCCCHHHHHHH
Q 038801 258 SFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN-LESASRTILLCLGGGNMEQSDFSKETYCEV 336 (662)
Q Consensus 258 t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l 336 (662)
.|..+...+...|++++|...++.+.+.. +-+..+|+.+..++...|+ +++|+..|.+.+...+. +...|+.+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-----~~~a~~~~ 172 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-----NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----CHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----CHHHHHHH
Confidence 34445555566666666666666666653 2335566666666666664 66666666666654322 45555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK- 415 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~- 415 (662)
..++...|++++|+..|+++.++.+. +...|..+..++...|++++|...|+++++.. +.+...|+.+..++.+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~----~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 55555556666666555555543322 23334444444555555555555555555443 2334444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC--CHHHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENH--RPELMA 493 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~ 493 (662)
.|..++|. .+.++..|++.++.. |.+...|+.+...+...| +.++|.
T Consensus 248 ~~~~~eA~------------------------------~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 248 TGYNDRAV------------------------------LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp TCSCSHHH------------------------------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred cCcchHHH------------------------------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 33323331 000024444444433 333344444444444444 345555
Q ss_pred HHHHHHhhCCCCccchhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCH-HHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAG---------RLEDAKRTLRRM-IFLQFEPND-QTYLSLINGYV 555 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~-~~~~~li~~~~ 555 (662)
+.+.++ + ....+...+..+..+|.+.| ..++|.++|+++ .+ +.|.. ..|..+...+.
T Consensus 297 ~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 297 NQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 555554 2 11223455666666776653 247788888777 54 34544 35555544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=120.61 Aligned_cols=200 Identities=7% Similarity=0.001 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
|..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 3333444444444444444444444321 1133344444444444444444444444444432 2233344444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 565 (662)
.|++++|.++++++.+..+ .+...+..+...|...|++++|.+.++++.+.. ..+...+..+...+...|++++|+.
T Consensus 104 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555554444443211 123455666666666777777777776666542 2245566666666777777777777
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.++++.. .. ..+..++..+..++.+.|++++|.+.++++.+..+.
T Consensus 181 ~~~~~~~-------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 181 QFAAVTE-------QD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH-------HC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHH-------hC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 7776662 11 123456666666777777777777777776655443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-12 Score=119.07 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=115.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 448 (662)
..+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.. ..+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 334445555555666666666666665543 3345566666666666666666666666665542 12455566666666
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHH
Q 038801 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDA 528 (662)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 528 (662)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+...+..+...|...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666554 33445566666666666777777776666655322 2345677777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 529 KRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 529 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...|+++.+.. ..+..++..+..+|...|++++|...++++.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88887777642 2245677777777778888888888888777
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=130.64 Aligned_cols=278 Identities=9% Similarity=-0.051 Sum_probs=208.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGL----GVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNY 441 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~ 441 (662)
+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|...|++..+. +..+ ....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345566777888888888888887763 2232 47888899999999999999999987653 1122 45678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCCcccHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 038801 442 DALIEASITSQDFQSAFSLFRDMREAR-----IYDLKGSYLTIMTGLMENHR-----------------PELMAAFLDEV 499 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~ 499 (662)
..+...|...|++++|...+++..+.. .+....++..+...+...|+ +++|.+.+.+.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 888999999999999999999887642 12234578888889999999 99999998886
Q ss_pred hhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 500 VED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 500 ~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
.+. .+..+ ...++..+...|...|++++|.+.+++..+..- .++ ...+..+...|...|++++|+..+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 11112 245788899999999999999999999886310 112 237888999999999999999999999
Q ss_pred HHhhcccCCCCCc-ccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-------CCHHhHHHHHHHHhhhhhhhHHHH
Q 038801 571 KRKISTDGQKGIK-FEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-------VDKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 571 ~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-------p~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
.+..+.. +.. ....++..+...+...|++++|.+++++..+.... +..+..+...+...|+.+.|...+
T Consensus 290 l~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 290 LALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8655421 222 22467888999999999999999999998654221 124445566667789999999999
Q ss_pred HHHHhhHHHH
Q 038801 643 RNFKKMEALI 652 (662)
Q Consensus 643 ~~~~~l~p~~ 652 (662)
++++++.+..
T Consensus 367 ~~al~~~~~~ 376 (411)
T 4a1s_A 367 EQHLQLAXXX 376 (411)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHHHHhhc
Confidence 9998875443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-09 Score=113.81 Aligned_cols=443 Identities=8% Similarity=-0.019 Sum_probs=288.8
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCC-
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQS- 236 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~- 236 (662)
..+.+..|++.+... |.+......++..+.+.+.++.+..+|+++... .+.+...|...+..-.+. ++
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--------fP~~~~lW~~Yi~~E~~~-~~~ 116 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--------FPLMANIWCMRLSLEFDK-MEE 116 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTC---C
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhh-CCc
Confidence 445555666666543 566666777888888889999999999999874 666778888888888876 88
Q ss_pred --hhHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHcCCH--------HHHHHHHHHHHh-cCC-CCc-HHhHHHHHHHHH
Q 038801 237 --VSDAEKVIETMSVLG-VRPNESSFGFLAYLYALKGLQ--------EKIVELESLMNE-FGF-SSQ-MVFYSSLISGYV 302 (662)
Q Consensus 237 --~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~ 302 (662)
++.+..+|++..... ..|+...|...+.-..+.++. +.+.++|+.... .|. .++ ...|...+....
T Consensus 117 ~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 117 LDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE 196 (679)
T ss_dssp CCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 999999999987653 137777777666655554443 345577777654 365 454 467777776543
Q ss_pred h---------cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH
Q 038801 303 K---------LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG 373 (662)
Q Consensus 303 ~---------~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 373 (662)
. .++++.+..+|.+.+.- +...-..+|..... +.+.-+...+.+++.+.
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~----------------- 254 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL----------------- 254 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTS----CCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH-----------------
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhC----ccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh-----------------
Confidence 2 34567788888777742 11111223322211 11110111122221111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--CCC----C-----------C--C------hhhHHHHHHHHHHcC-------CHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNA--CGC----S-----------V--G------LGVYVPTLKAYCKEH-------RTAE 421 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~--~~~----~-----------~--~------~~~~~~li~~~~~~g-------~~~~ 421 (662)
..+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.
T Consensus 255 -------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~R 327 (679)
T 4e6h_A 255 -------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKAR 327 (679)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHH
Confidence 1233334444443321 111 1 1 0 134444443322222 1344
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH-HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF-SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 422 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+..+|++..... .-+...|...+..+...|+.++|. .+|++.... .|.+...+...+......|+++.|..+|+++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567788887763 336778888888888889999997 999999875 35555567778888889999999999999987
Q ss_pred hCCC--------Ccc------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cC
Q 038801 501 EDPR--------VEV------------KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPNDQTYLSLINGYVT-AE 558 (662)
Q Consensus 501 ~~~~--------~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~-~~ 558 (662)
.... -.| ...+|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 6310 012 2346888888888999999999999999875 2 1122333322222223 35
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHhhh
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF----VDKWKYKQAFMENHKK 634 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~~~~~~~~~ 634 (662)
+.+.|.++|+...+.+ .-+...+...+......|+.+.|..+|++....... .+.|...+.+=..+|+
T Consensus 485 d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp CCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999422 224456678888888899999999999999877663 2477777888888999
Q ss_pred hhhhHHHHHHHHhhHHH
Q 038801 635 LKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 635 ~~~a~~~~~~~~~l~p~ 651 (662)
.+.+.++.+++.+..|.
T Consensus 557 ~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp SHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999998876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=120.71 Aligned_cols=276 Identities=9% Similarity=-0.017 Sum_probs=206.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhHH
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACGCSVG----LGVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNYD 442 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~ 442 (662)
......+...|++++|...|+++.+.. +.+ ...+..+...|...|++++|...+++..+. +..+ ....+.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 345667888999999999999998864 223 467888999999999999999999886543 2122 356788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----cccHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARI-YDL----KGSYLTIMTGLMENHR--------------------PELMAAFLD 497 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 497 (662)
.+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 889999999999999999998875421 111 2377788889999999 999999988
Q ss_pred HHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038801 498 EVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWH 568 (662)
Q Consensus 498 ~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~ 568 (662)
+.... .+..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76532 11112 245788889999999999999999998875310 112 2378888999999999999999999
Q ss_pred HHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-------CCHHhHHHHHHHHhhhhhhhHH
Q 038801 569 EIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-------VDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 569 ~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-------p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
+.....+. .+..+. ..++..+...+...|++++|...++++.+.... ...+..+...+...|+.+.|..
T Consensus 248 ~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 248 KTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHh---hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99865442 222222 467788889999999999999999988654221 2244455666777899999999
Q ss_pred HHHHHHhhHHH
Q 038801 641 RKRNFKKMEAL 651 (662)
Q Consensus 641 ~~~~~~~l~p~ 651 (662)
.+++++++.+.
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999987653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-11 Score=122.55 Aligned_cols=235 Identities=10% Similarity=0.005 Sum_probs=169.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC------CCCcccHH
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARI------YDLKGSYL 477 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~~~~ 477 (662)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888999999999888764 1111 245778888888889999999998888775321 11134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPND-QTYL 548 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~ 548 (662)
.+...|...|++++|...+++..+. .+..+ ...++..+..+|...|++++|.+.|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888999999999988887642 11111 1347888999999999999999999988872 222443 6888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc---hHHHHHHHHHHHhCCCCC---CHH
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF---FDAVMQVVEKSQEMKVFV---DKW 622 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p---~~~ 622 (662)
.+...+...|++++|...+++..+..+.. +-......+..+...+...|+ +++|+.++++. +..| +.+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 99999999999999999999988544321 222222346678888889998 77777777775 3333 345
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHhhH
Q 038801 623 KYKQAFMENHKKLKVAKLRKRNFKKME 649 (662)
Q Consensus 623 ~~~~~~~~~~~~~~~a~~~~~~~~~l~ 649 (662)
..+...+...|+.+.|...+++++++.
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 555667777899999999999888765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=112.58 Aligned_cols=219 Identities=10% Similarity=0.039 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCK-------EHRT-------AEATQLVMDISSSGLQL-DVGNYDALIEASI 449 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 449 (662)
++|..+|++.+... +.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 67778888888753 5567778877777753 4775 8888888888873 134 4567888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC-cc-cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH-hcCCHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDL-KG-SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC-KAGRLE 526 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~ 526 (662)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|+.++|..+|++..+..+. +...|........ ..|+.+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCHH
Confidence 888899999998888874 333 33 6888888888888888888888888875332 2334443333322 268888
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC-CCccc--HHHHHHHHHHHHccCch
Q 038801 527 DAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK-GIKFE--HNLVDAFLYALVKGGFF 602 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~ 602 (662)
+|.++|++..+. .| +...|..++..+.+.|++++|..+|++.. .. .+.|+ ...|..++..+.+.|+.
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-------~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL-------TSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 888888888764 34 45678888888888888888888888888 43 24553 46777778888888888
Q ss_pred HHHHHHHHHHHhCCCC
Q 038801 603 DAVMQVVEKSQEMKVF 618 (662)
Q Consensus 603 ~~A~~~~~~m~~~~~~ 618 (662)
++|..+++++.+..+.
T Consensus 258 ~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 258 ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHccc
Confidence 8888888888766554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-11 Score=120.65 Aligned_cols=231 Identities=7% Similarity=-0.013 Sum_probs=172.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----ChhhHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNAC----GCSV-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-L-----DVGNYD 442 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~~~~~~ 442 (662)
....+...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667889999999999998774 2111 3467888899999999999999999887653111 1 235788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC-ccchhhHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARI-----YDLKGSYLTIMTGLMENHRPELMAAFLDEVVED---PRV-EVKTHDWN 513 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~p~~~~~~ 513 (662)
.+...|...|++++|...|++..+... +....++..+...|...|++++|...+++..+- .+. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998875421 111247888889999999999999999987661 122 22356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQF---EPN-DQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
.+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+ +++|+.++++.. ..|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----------~~~~~ 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----------LYADL 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----------CHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----------CHHHH
Confidence 999999999999999999998876310 122 2346778888888888 677777766443 3333
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
...+..+...+.+.|++++|.+++++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36778899999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-12 Score=122.11 Aligned_cols=254 Identities=11% Similarity=0.061 Sum_probs=131.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCC
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNAC-------GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS------GLQ 435 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 435 (662)
.++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555666666666666666665552 11223345555555666666666666666555432 111
Q ss_pred C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 436 L-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 436 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
| ....+..+...|...|++++|...|+++.+.. ..... .........+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~-~~~~~~~~~~~~ 158 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLG-KDHPDVAKQLNN 158 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcC-CCChHHHHHHHH
Confidence 1 23445555555555555555555555544321 00000 011123455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc---
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFL------QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF--- 584 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--- 584 (662)
+...|...|++++|.+.++++.+. +-.|+. .++..+...|...|++++|...++++.+..+........+
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 777778888888888888777763 213322 4677777888888888888888888774432210001111
Q ss_pred ----cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 585 ----EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 585 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
....+..+...+...+.+.+|...++......+. +..+..+...+...|+.+.|...+++++++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122333333444566666666667666443322 335555566667778888888888888887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-10 Score=107.79 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHhCCCCccccc-chHH
Q 038801 308 ESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQ-------NGNV-------KGLANLIIEAQKLEPSGIVVDR-SVGF 372 (662)
Q Consensus 308 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~-~~~~ 372 (662)
++|..+|.+.+...+. +...|..++..+.. .|+. ++|..+|++..+ .+.|+. ..|.
T Consensus 33 ~~a~~~~~~al~~~p~-----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~----~~~p~~~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS----TLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT----TTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH----HhCcccHHHHH
Confidence 5666677777764322 66777777766653 3554 666666666543 123332 2444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-H
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVG-LG-VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS-I 449 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~ 449 (662)
.++..+...|++++|.++|+++++. .|+ .. +|..++..+.+.|++++|..+|++..+... .+...|....... .
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 5555556666666666666666553 222 22 555555556666666666666666555421 1222232222111 1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--chhhHHHHHHHHHhcCCHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV--KTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 527 (662)
..|++++|..+|++..+.. |.+...+..++..+.+.|+.++|..+|++........| ....|..++..+.+.|+.+.
T Consensus 181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2455555555555554432 22333344444444444444444444444443211122 12234444444444444444
Q ss_pred HHHHHHHHHh
Q 038801 528 AKRTLRRMIF 537 (662)
Q Consensus 528 A~~~~~~m~~ 537 (662)
|..+++++.+
T Consensus 260 a~~~~~~a~~ 269 (308)
T 2ond_A 260 ILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-12 Score=121.46 Aligned_cols=249 Identities=10% Similarity=0.011 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS----GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC------G 398 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~ 398 (662)
+..++..+...+...|++++|..+|+++.++... ........+..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4568899999999999999999999999863211 12233456677889999999999999999998764 2
Q ss_pred C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 038801 399 C-SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS------GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIY 470 (662)
Q Consensus 399 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 470 (662)
. +....++..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|..+|+++.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 2 334678889999999999999999999998764 2222 34567778888888888888888888776541
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC
Q 038801 471 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-------QFEPN 543 (662)
Q Consensus 471 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~ 543 (662)
..... ........++..+...|...|++++|.+.++++.+. ...+.
T Consensus 184 --------------------------~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 184 --------------------------QTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp --------------------------HHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------------------------HHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 00000 001112345677777777778888888877777752 11121
Q ss_pred H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 544 D-------QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 544 ~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
. ..+..+...+...+.+.++...++... ...| +..++..+..++.+.|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK---------VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC---------CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 122222333334455566666666655 2233 3478888999999999999999999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-10 Score=101.57 Aligned_cols=164 Identities=9% Similarity=0.028 Sum_probs=118.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 481 (662)
+..+|..+...|.+.|++++|.+.|++..+... -+...|..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 455677777777777777777777777766531 155667777777777777777777777776654 344455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~ 560 (662)
.+...++.+.+...+.+.....+ -+...+..+..+|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 77777777777777777666422 23456777888888888888888888888875 44 456788888888888888
Q ss_pred HHHHHHHHHHH
Q 038801 561 FSVLMMWHEIK 571 (662)
Q Consensus 561 ~~a~~~~~~m~ 571 (662)
++|++.|++..
T Consensus 158 ~~A~~~~~~al 168 (184)
T 3vtx_A 158 DEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888887
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=121.01 Aligned_cols=211 Identities=9% Similarity=0.064 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF-QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 497 (662)
++++...+++..... ..+...+..+..+|...|++ ++|++.|++..+.. +.+...+..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555666666655442 22566777777778888888 88888888877765 4556677788888888888888888888
Q ss_pred HHhhCCCCccchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc--------CC
Q 038801 498 EVVEDPRVEVKTHDWNSIIHAFCKA---------GRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTA--------EQ 559 (662)
Q Consensus 498 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~--------~~ 559 (662)
+..+. .|+...+..+...|... |++++|.+.|++..+. .| +...|..+..+|... |+
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 87764 35567788888888888 9999999999999985 45 467899999999988 99
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcc----cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKF----EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKK 634 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~ 634 (662)
+++|++.|++..+ +.| +...|..+..++.+.|++++|.+.++++.+..+. +..+..+...+...|+
T Consensus 237 ~~~A~~~~~~al~---------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 237 SQQALSAYAQAEK---------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHH---------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999993 344 5688999999999999999999999999877655 4456666666777788
Q ss_pred hhhhHHHHHHH
Q 038801 635 LKVAKLRKRNF 645 (662)
Q Consensus 635 ~~~a~~~~~~~ 645 (662)
.+.|...++++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 88877655444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-10 Score=102.52 Aligned_cols=170 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
+...|..+...|.+.|++++|+..|++..+.. |.+.. +|..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~------------------------------------~~~~la 46 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVE------------------------------------TLLKLG 46 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH------------------------------------HHHHHH
Confidence 34455555566666666666666666555543 33333 444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYA 595 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~ 595 (662)
.+|.+.|++++|...++...... .-+...+..+...+...++++.|...+++... ..| +...+..+..+
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~---------~~~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIA---------LNTVYADAYYKLGLV 116 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCccchHHHHHHHHH
Confidence 55555555555555555554431 11233444444455555555555555555541 122 23444455555
Q ss_pred HHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+.+.|++++|++.++++.+.++. ++.+..+...+...|+.+.|...++++++++|.++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 55555555555555555444332 33344444444445555555555555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-10 Score=113.36 Aligned_cols=228 Identities=10% Similarity=0.036 Sum_probs=151.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CC-ChhhHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGC-SV----GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL-----QL-DVGNYD 442 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~-~~~~~~ 442 (662)
....+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678899999999888876421 12 245777888888889999999888887654311 11 245677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC--C---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCccchhhH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREAR--I---YDLKGSYLTIMTGLMENHRPELMAAFLDEVVE-----DPRVEVKTHDW 512 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~--~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~p~~~~~ 512 (662)
.+..+|...|++++|.+.|++..+.. . .....++..+...+...|++++|...+++..+ .. .....++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHH
Confidence 78888888899999998888876531 1 11124566677777788888888888877665 31 1125567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQF---EPN-DQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
..+...|.+.|++++|...+++..+..- .|. ...+..+...+...++ +.+|+.++++.. ..|+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~----------~~~~ 334 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN----------LHAY 334 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT----------CHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC----------ChhH
Confidence 7777888888888888888887776311 122 2345555556666666 666666665422 2233
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 586 -HNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 586 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
...+..+...+.+.|++++|.+.++++.
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3556677777888888888888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-09 Score=108.87 Aligned_cols=307 Identities=13% Similarity=0.028 Sum_probs=192.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc--ccchHHHH
Q 038801 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV--DRSVGFGI 374 (662)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~l 374 (662)
....+...|++++|...+.+.+...+..........++.+...+...|++++|.+.+++...+.+..-.+ ...++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777766666543110000001245556666777778888777777765432211111 11223456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----ChhhHHH
Q 038801 375 ISACVNLGLSDKAHSILDEMNAC----GCS--V-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL----DVGNYDA 443 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ 443 (662)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777888888888888877552 221 2 23456667788888999999999998876542221 2345777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-ccHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--chhhHHHH
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLK-GSYL-----TIMTGLMENHRPELMAAFLDEVVEDPRVEV--KTHDWNSI 515 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l 515 (662)
+...+...|++++|...+++.......+.. ..+. ..+..+...|+.++|..++.+........+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 788888899999999999988754212111 1122 222347788999999999988765422111 12246777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFL----QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++.....+. .|
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~---~g--------- 327 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR---TG--------- 327 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HC---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---cc---------
Confidence 88899999999999999988652 212222 36677788888999999999999998844331 11
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+..+...| +....+++.+....+.
T Consensus 328 -~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 -FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp -CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 112233444 5566666666555544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=119.81 Aligned_cols=213 Identities=8% Similarity=-0.092 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 038801 346 VKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS-DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424 (662)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (662)
++++++.+++... ..+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+
T Consensus 84 ~~~al~~l~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHT----TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc----cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666665543 2223555677788888899999 99999999998864 4567899999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcC---------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc--------C
Q 038801 425 LVMDISSSGLQLDVGNYDALIEASITS---------QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN--------H 487 (662)
Q Consensus 425 ~~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------~ 487 (662)
.|++..+. .|+...+..+...|... |++++|+..|++..+.. +.+...+..+..+|... |
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 99999987 57778888899999999 99999999999999875 56677888899999888 9
Q ss_pred CHHHHHHHHHHHhhCCC-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 038801 488 RPELMAAFLDEVVEDPR-VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 488 ~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~ 565 (662)
++++|...|++..+..+ ..-+...|..+..+|...|++++|.+.|++..+. .|+ ...+..+..++...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887422 0125678999999999999999999999999875 454 4678888899999999999887
Q ss_pred HHH
Q 038801 566 MWH 568 (662)
Q Consensus 566 ~~~ 568 (662)
.+.
T Consensus 314 ~~~ 316 (474)
T 4abn_A 314 SKG 316 (474)
T ss_dssp HTT
T ss_pred Hhc
Confidence 654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-10 Score=111.93 Aligned_cols=237 Identities=11% Similarity=-0.016 Sum_probs=177.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CC----CCccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQ-L----DVGNYDALIEASITSQDFQSAFSLFRDMREAR--IY----DLKGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~ 475 (662)
......+...|++++|...|++..+.... + ...++..+...|...|++++|...+++..+.. .. ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34455677899999999999998765211 2 24578888999999999999999999887532 11 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCC-HH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVED---PRVE-VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF-----LQFEPN-DQ 545 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~-~~ 545 (662)
++.+...|...|++++|.+.+++..+. .+.. ....++..+..+|...|++++|.+.|++..+ . .|+ ..
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~ 262 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPK 262 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHH
Confidence 778889999999999999999887652 1111 1245788899999999999999999999987 4 233 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc---hHHHHHHHHHHHhCCCCC---
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF---FDAVMQVVEKSQEMKVFV--- 619 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p--- 619 (662)
++..+...+.+.|++++|...+++..+..+. .+.......+..+...+...|+ +++|+.++++ .+..|
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~ 336 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITA---RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT---TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence 8889999999999999999999999965542 2222233456667777778888 7788888776 33333
Q ss_pred CHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 620 DKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
+.+..+...+...|+.+.|...+++++++...
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34444566667789999999999999887643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-09 Score=109.02 Aligned_cols=279 Identities=9% Similarity=-0.030 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hhhH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSILDEMNACGC-SVG----LGVY 406 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~ 406 (662)
+......+...|++++|...+++.....+.+-.. -...+..+...+...|++++|.+.+++.....- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556778999999999999987633211000 011345566778889999999999998765311 111 2346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC--C--Cccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSS----GLQ--L-DVGNYDALIEASITSQDFQSAFSLFRDMREARIY--D--LKGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~--~~~~ 475 (662)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788899999999999999987653 221 2 2345667888899999999999999998865321 1 2245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN-----SIIHAFCKAGRLEDAKRTLRRMIFLQFEPN---DQTY 547 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 547 (662)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77778889999999999999998764211111111122 233457799999999999999886432211 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
..+...+...|++++|...+++.....+ ..+..++. ..+..+..++...|+.++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENAR---SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7788889999999999999999885544 23333343 3677778889999999999999998754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-10 Score=107.22 Aligned_cols=208 Identities=11% Similarity=0.068 Sum_probs=114.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-------
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSS------GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREAR------- 468 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------- 468 (662)
..++..+...|...|++++|...|++..+. +-.| ...++..+...|...|++++|...|++..+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555555566666666666665555433 1112 23455556666666666666666666655431
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED------PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL---- 538 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 538 (662)
.+....++..+...+...|++++|..++++..+. ........++..+...|...|++++|.+.++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1222345555556666666666666666665442 011223567888888899999999999999888762
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC-Ccc-cHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 539 ---QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG-IKF-EHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 539 ---~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
...+.. ..|..+...+...+....+.. +.++..... ..+ ..| ...++..+..++.+.|++++|..++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYK---ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC----------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122222 234334333333332222222 222221111 111 223 3367888999999999999999999987
Q ss_pred Hh
Q 038801 613 QE 614 (662)
Q Consensus 613 ~~ 614 (662)
.+
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 65
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-09 Score=93.84 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
.+..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44445555556666666666666555432 1244555556666666666666666666665553 334455566666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVL 564 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 564 (662)
..|++++|.+.++++.+..+ .+...+..+...+...|++++|.+.++++.+.. ..+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666655322 244567778888888888888888888887753 235578888888888888888888
Q ss_pred HHHHHHHH
Q 038801 565 MMWHEIKR 572 (662)
Q Consensus 565 ~~~~~m~~ 572 (662)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=5e-09 Score=96.73 Aligned_cols=192 Identities=13% Similarity=-0.039 Sum_probs=145.7
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038801 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE 446 (662)
Q Consensus 367 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 446 (662)
|...+......+...|++++|...|++.++..-.++...+..+..++...|++++|...|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445677788888999999999999999988763367777777899999999999999999999886322 5678888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc---hhhHHHHH
Q 038801 447 ASITSQDFQSAFSLFRDMREARIYDLK-------GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK---THDWNSII 516 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 516 (662)
+|...|++++|...|++..+.. |.+. ..|..+...+...|++++|+..+++..+. .|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 9999999999999999998875 3444 44777778888899999999999998874 333 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.+|...| ..+++++...+ ..+...|..... ...+.+++|+..+++..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 7775544 44556665543 334455544433 34577899999999998
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=7.1e-09 Score=91.90 Aligned_cols=163 Identities=14% Similarity=0.066 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH
Q 038801 293 FYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF 372 (662)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 372 (662)
.+..+...+...|++++|...|.+.++..+ .+...+..+...+...|++++|.+.++++.+..+ .+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~ 80 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-----FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP----DNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHH
Confidence 344455555555666666555544443321 1344555555555555555555555555544211 1233344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...+++..+.. ..+...+..+...+...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 44455555555555555555554432 3344455555555555555555555555555442 113445555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 038801 453 DFQSAFSLFRDMRE 466 (662)
Q Consensus 453 ~~~~A~~~~~~m~~ 466 (662)
++++|...+++..+
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=116.49 Aligned_cols=164 Identities=9% Similarity=0.067 Sum_probs=127.3
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
+...|+.|...|.+.|++++|++.|++.++.. +.+...+..+...|.+.|++++|+..|++..+..+ -+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 45778888888889999999999998888875 55667788888888888888888888888776421 1356788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLY 594 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~ 594 (662)
.+|.+.|++++|++.|++.++. .|+ ...|+.+..+|...|++++|++.|++.. .+.|+ ...+..+..
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al---------~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTAL---------KLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCSCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCChHHHhhhhh
Confidence 8888888888888888888774 454 4678888888888888888888888887 34454 367777888
Q ss_pred HHHccCchHHHHHHHHHHHh
Q 038801 595 ALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~ 614 (662)
++...|++++|.+.++++.+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 88888888888888877754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-08 Score=93.59 Aligned_cols=198 Identities=11% Similarity=0.046 Sum_probs=128.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
|...+......+...|++++|...|++..+...+++...+..+...+...|++++|+..+++..+..+- +...|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN--LANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--hHHHHHHHH
Confidence 344555555556666666666666666665542244445555566666666666666666666553221 345677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc---
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPN-D-------QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE--- 585 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--- 585 (662)
.+|...|++++|.+.|++..+. .|+ . ..|..+...+...|++++|++.|+++. .+.|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---------~~~p~~~~ 152 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---------DVTSKKWK 152 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---------TSSCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---------hcCCCccc
Confidence 8888888888888888888874 443 3 357777778888899999999999888 44565
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...+..+..++...|+ .+++++...+.. +...+........+.++.|...++++++++|.+.
T Consensus 153 ~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 153 TDALYSLGVLFYNNGA-----DVLRKATPLASS-NKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHGGGTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 3666777777765543 445555444322 2333334445556778888888899988888643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-09 Score=112.61 Aligned_cols=164 Identities=11% Similarity=-0.054 Sum_probs=102.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccch
Q 038801 291 MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSV 370 (662)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (662)
..+|+.|...|.+.|++++|++.|.+.++..+. +...|+.+..+|.+.|++++|++.|++..++.+. +...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a 79 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----FADA 79 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHH
Confidence 455666666666666666666666666654322 4556666666666666666666666666554332 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASI 449 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 449 (662)
|..+..++...|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|++.|++..+. .| +...|..+..+|.
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHH
Confidence 5566666666666666666666666643 344566667777777777777777777776665 33 4556666777777
Q ss_pred cCCCHHHHHHHHHHHHH
Q 038801 450 TSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~ 466 (662)
..|++++|.+.+++..+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 77777777666666543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-08 Score=94.98 Aligned_cols=184 Identities=10% Similarity=-0.006 Sum_probs=130.2
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 457 AFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
|+..|++..+.+ +++..++..+..++...|++++|.+++.+........-+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777777655 4444556677788888888888888888876542212356678888999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHH
Q 038801 537 FLQFEP-----NDQTYLSLINGYV--TAE--QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 537 ~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
+. .| +..+...|..++. ..| ++.+|..+|+++. + -.|+..+...++.++.+.|++++|.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~-------~--~~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS-------Q--TFPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH-------T--TSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-------H--hCCCcccHHHHHHHHHHcCCHHHHHH
Confidence 74 67 3556666666633 334 8999999999998 2 33543333444558889999999999
Q ss_pred HHHHHHhCC----------C-CCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 608 VVEKSQEMK----------V-FVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 608 ~~~~m~~~~----------~-~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
.++.+.+.. + .|+....++......|+ .+.+..+++.++.|...+
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 999776531 1 24444343444455565 788999999998876553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=102.23 Aligned_cols=174 Identities=10% Similarity=0.056 Sum_probs=120.1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC
Q 038801 474 GSYLTIMTGLMENHRPELMAAFLDEVVED------PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL------QFE 541 (662)
Q Consensus 474 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~ 541 (662)
.++..+...+...|++++|...+++..+. ........+|..+...|...|++++|.+.|++..+. .-.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444455555555555555444332 111223567888999999999999999999988864 112
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCC---
Q 038801 542 PN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK--- 616 (662)
Q Consensus 542 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--- 616 (662)
|+ ..++..+...|...|++++|+..++++.+....... +..| ...++..+..++.+.|++++|.++++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG-PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 33 368889999999999999999999999854332111 1133 34788889999999999999999999886530
Q ss_pred --------------------------------------------CCC---CHHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 617 --------------------------------------------VFV---DKWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 617 --------------------------------------------~~p---~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
..| ..+..+...+...|+.+.|...+++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112 23444466667789999999999888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-08 Score=95.37 Aligned_cols=193 Identities=12% Similarity=-0.013 Sum_probs=128.7
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---C--ChhhHHHHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNAC----GCSVG-LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ---L--DVGNYDALIE 446 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~ 446 (662)
.+...|++++|...|.+..+. |..++ ..+|+.+..+|.+.|++++|...|++..+.... + -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455567777777666665442 21111 456777777888888888888877776543110 1 1346777888
Q ss_pred HHHcC-CCHHHHHHHHHHHHHcCCCC-C----cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch-----hhHHHH
Q 038801 447 ASITS-QDFQSAFSLFRDMREARIYD-L----KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT-----HDWNSI 515 (662)
Q Consensus 447 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l 515 (662)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+..+-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88998888888877642111 1 2457778888889999999999999888753222222 156778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ------TYLSLINGYV--TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~--~~~~~~~a~~~~~~m~ 571 (662)
..++...|++++|...|++..+ +.|+.. .+..++.+|. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 8889999999999999999886 345432 3445566664 3577888888887665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.4e-08 Score=94.14 Aligned_cols=201 Identities=10% Similarity=0.015 Sum_probs=140.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC-Ccccc-cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHH
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPS-GIVVD-RSVGFGIISACVNLGLSDKAHSILDEMNAC----GCSV-GLGVYVPT 409 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l 409 (662)
...|...|++++|.+.|++...+.+. +-.++ ..+|+.+..+|...|++++|...+++.++. |-.. -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44677788888888888877653221 11111 456777888888899999999888887653 2111 13578888
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc------cHH
Q 038801 410 LKAYCKE-HRTAEATQLVMDISSSGLQL-D----VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG------SYL 477 (662)
Q Consensus 410 i~~~~~~-g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~ 477 (662)
..+|... |++++|...|++..+..... + ..+++.+...+.+.|++++|+..|++..+........ .|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 99999999999887641110 1 3568888999999999999999999999865322221 467
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch---hhHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT---HDWNSIIHAFC--KAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 537 (662)
.+..++...|++++|...+++..+..+..++. ..+..++.+|. ..+++++|++.|+++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 77788999999999999999987632222221 13445566664 45678888888877763
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-08 Score=91.87 Aligned_cols=182 Identities=12% Similarity=0.054 Sum_probs=121.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-ChhhHH
Q 038801 368 RSVGFGIISACVNLGLSDKAHSILDEMNACGCSVG---LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-L-DVGNYD 442 (662)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~ 442 (662)
...+..+...+...|++++|...|+++++.. +.+ ...+..+..+|.+.|++++|...|++..+.... | ....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445556677777888888888888887753 223 566777777888888888888888887775221 1 134556
Q ss_pred HHHHHHHc--------CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 443 ALIEASIT--------SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 443 ~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.+..++.. .|++++|...|++..+.. |.+...... ...+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a--------------~~~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDA--------------TQKIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHH--------------HHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHH--------------HHHHHHHHHH-----HHHHHHH
Confidence 66667777 778888888888777653 222211111 1111111110 0112466
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPN----DQTYLSLINGYVTA----------EQYFSVLMMWHEIKR 572 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~ 572 (662)
+...|.+.|++++|...|+++++. .|+ ...+..+..+|... |++++|+..|+++.+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 788899999999999999999875 454 35777788888765 899999999999994
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-07 Score=85.53 Aligned_cols=253 Identities=9% Similarity=0.010 Sum_probs=160.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH 417 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (662)
+-..-.|++..++.-. .++.+ ..++ ....-+.+++...|++... ..-.|.......+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~--~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSK--VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSC--CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT
T ss_pred HHHHHhhHHHHHHHHH---HhcCc--cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc
Confidence 3344567777776632 22211 1111 1222345777777776531 112333333333333 33322
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 418 RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI-YDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 418 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
|...|++..+.+ .++..++..+..++...|++++|++++.+.++.+- ..+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677788777654 34555566788888889999999999988876653 245567788888999999999999999
Q ss_pred HHHhhCCCCcc-----chhhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038801 497 DEVVEDPRVEV-----KTHDWNSIIHAF--CKAG--RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMW 567 (662)
Q Consensus 497 ~~~~~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 567 (662)
++|.+. .| +..+...|..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.+
T Consensus 160 ~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 160 DNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 998763 34 244555666563 3334 899999999999875 576444455555888999999999999
Q ss_pred HHHHHhhcccC-CCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 568 HEIKRKISTDG-QKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 568 ~~m~~~~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+.+.+..+... +.+..| +..++..++......|+ +|.++++++.+..+.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 98773221100 000124 44666455555555676 899999999887765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.2e-08 Score=91.02 Aligned_cols=194 Identities=13% Similarity=0.011 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhh
Q 038801 328 FSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC--SVGLGV 405 (662)
Q Consensus 328 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 405 (662)
.+...+..+...+.+.|++++|++.|+++....+.. ......+..+..++...|++++|...|++.++..- +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356778888899999999999999999997633221 00134666788899999999999999999998631 122456
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccH
Q 038801 406 YVPTLKAYCK--------EHRTAEATQLVMDISSSGLQLDV-GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSY 476 (662)
Q Consensus 406 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 476 (662)
+..+..++.+ .|++++|...|+++.+. .|+. .....+.. +..+... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 7778888988 99999999999999886 4443 22222111 0000000 00124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCH
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKA----------GRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
..+...+.+.|++++|+..|+++.+..+-.+ ....+..+..+|... |++++|...|+++.+. .|+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 5556667777777777777777766433222 234566677777655 7888888888888874 4554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.3e-08 Score=87.29 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 038801 479 IMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTA 557 (662)
Q Consensus 479 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 557 (662)
+...+.+.|++++|+..|++..+..+ -+...|..+..+|...|++++|...|++.++. .|+ ...|..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 66677777777777777777766422 23567788888888888888888888888874 454 46777777777655
Q ss_pred CC--HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 558 EQ--YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 558 ~~--~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|+ .+.+...++... ...|....+.....++...|++++|+..+++..+..+.
T Consensus 136 ~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS---------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh---------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 43 334444444443 22333334444566677788888898888888766554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-05 Score=81.92 Aligned_cols=101 Identities=11% Similarity=-0.086 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCC-C
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQ-S 236 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~ 236 (662)
++.|..+|+.+...- |. |+++.+..+|++... ..|++..|...+.-..+. + .
T Consensus 11 i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~---------~~ps~~LW~~Y~~f~~~~-~~~ 63 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLK---------KSYNLDLWMLYIEYVRKV-SQK 63 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHST---------TCCCHHHHHHHHHHHHHH-C--
T ss_pred hHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHHh-Cch
Confidence 667777777776521 11 678888888888755 457888888777766665 4 3
Q ss_pred hhHHHHHHHHHHhc-CCCC-CcccHHHHHHHHH----HcCCHHHHHHHHHHHHhc
Q 038801 237 VSDAEKVIETMSVL-GVRP-NESSFGFLAYLYA----LKGLQEKIVELESLMNEF 285 (662)
Q Consensus 237 ~~~a~~~~~~m~~~-g~~p-~~~t~~~li~~~~----~~g~~~~a~~~~~~~~~~ 285 (662)
.+....+|+..... |..| +...|...+.-+. ..|+.+.+..+|+.....
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 45566777776543 4333 3334444443322 235567777788777763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-07 Score=78.34 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
+..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 33444444455555555555555444321 133444444444445555555555555444432 2222233333333333
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
.|++++|..+++++.+..+ .+...+..+...+.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3333333333333332111 112234444444444444444444444444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-07 Score=77.28 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 411 (662)
.|..+...+...|++++|.++++++.+..+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC----cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 455666666666666666666666654321 123344455555666666666666666665543 334455555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.+...|++++|...++++.+.. ..+...+..+...+.+.|++++|...++++.+.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666666655542 113445555556666666666666666655543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.2e-08 Score=93.42 Aligned_cols=232 Identities=8% Similarity=-0.008 Sum_probs=140.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|++++|.+++++..+..+.++ +...++++.|...|.+. ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~-------------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF-------------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS-------------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc-------------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 4566777777777654222110 00135666666666554 3456667777777
Q ss_pred HHHHHHHHhCCC----CC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--CcccHHHHHHHHHhcCCHHHH
Q 038801 423 TQLVMDISSSGL----QL-DVGNYDALIEASITSQDFQSAFSLFRDMREARI---YD--LKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 423 ~~~~~~m~~~g~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a 492 (662)
...|.+..+... .. -..+|+.+...|...|++++|+..|++..+... .+ ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 777766544311 00 134666777777777888888877777654311 11 12456666667766 888888
Q ss_pred HHHHHHHhhCC---CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038801 493 AAFLDEVVEDP---RVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPND-QTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 493 ~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~~~~~~a 563 (662)
+..+++..+.. +... ...+++.+...|.+.|++++|+..|++..+. +..+.. ..+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 88887765421 1111 1356788888899999999999999888762 111112 2566677777778999999
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHH
Q 038801 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 564 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
+..|++.. ..+ .............++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p---~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIP---GFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TST---TSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCC---CCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99998877 322 111111223455556555 56777666653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-06 Score=86.82 Aligned_cols=205 Identities=9% Similarity=-0.098 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEV 499 (662)
Q Consensus 420 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 499 (662)
+.+..+|+++.... ..+...|...+.-+.+.|+.++|..+|++.... |.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 45677899888753 335778888888888999999999999999988 44432222 22222111111 2222
Q ss_pred hhCC-----------CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 038801 500 VEDP-----------RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT-AEQYFSVLMMW 567 (662)
Q Consensus 500 ~~~~-----------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~ 567 (662)
.+.. ........|...+..+.+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2110 00112346777777777888999999999999 321 2244444322221122 24799999999
Q ss_pred HHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 568 HEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 568 ~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+...+.++ - +...+...+....+.|+.+.|..+++++.+ ....|...+.+=..+|+.+.+++++++.+.
T Consensus 344 e~al~~~~------~--~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHP------D--STLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCT------T--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99984221 1 234456677777889999999999999732 245777777777888999999988877765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-07 Score=83.76 Aligned_cols=121 Identities=4% Similarity=0.010 Sum_probs=71.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 523 (662)
+..+|.+.|++++|...|++..+.. |.+...+..+...+...|++++|...|++..+..+- +...|..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHh
Confidence 5666666777777777777666654 445566666666777777777777777776653221 2445666666665544
Q ss_pred C--HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 524 R--LEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 524 ~--~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+ .+.+...++... .|+. ..+..+..++...|++++|+..|++..
T Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 137 EQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3 334444554443 3333 233344455556677777887777777
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-07 Score=90.39 Aligned_cols=206 Identities=9% Similarity=-0.034 Sum_probs=150.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK-EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (662)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467788888888776532 111 112 47888888888765 456778899999999
Q ss_pred HHHHHHHcCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHH
Q 038801 460 LFRDMREARI-----YDLKGSYLTIMTGLMENHRPELMAAFLDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 460 ~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
.|.+..+... .....+|+.+...|...|++++|...+++..+- .+-.. ...+++.+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9998875421 111347888888999999999999999986542 12111 24578888899988 99999999
Q ss_pred HHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHH
Q 038801 531 TLRRMIFLQFEP-N----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 531 ~~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 604 (662)
.|++..+..-.. + ..++..+...|...|++++|+..|++..+..+. .+..+.. ..+..++.++...|++++
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE---MENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 999988631110 1 357888999999999999999999999965542 2223333 366777778888999999
Q ss_pred HHHHHHHHHhCCC
Q 038801 605 VMQVVEKSQEMKV 617 (662)
Q Consensus 605 A~~~~~~m~~~~~ 617 (662)
|...+++.. ..+
T Consensus 214 A~~~~~~al-~~p 225 (307)
T 2ifu_A 214 AQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHT-TST
T ss_pred HHHHHHHHh-CCC
Confidence 999999997 543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-07 Score=83.58 Aligned_cols=191 Identities=10% Similarity=-0.041 Sum_probs=117.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc---cH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL--DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG---SY 476 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~ 476 (662)
+...+..+...+.+.|++++|...|+++.+..... ....+..+..+|.+.|++++|...|++..+.. |.+.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 34456667778899999999999999998763221 12467778889999999999999999998864 22221 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ----------- 545 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------- 545 (662)
..+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+..
T Consensus 82 ~~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH
Confidence 4444444432100 00 00111122222334444444444444432 23221
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 546 -------TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 546 -------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
....+...|.+.|++++|+..|+++.+..+ +.......+..+..++.+.|+.++|.+.++.+...++.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP-----DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc-----CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113456677888999999999999984322 11112256778888999999999999999988776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-06 Score=82.09 Aligned_cols=171 Identities=9% Similarity=0.017 Sum_probs=118.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--cc--hh
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLK-----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVE--VK--TH 510 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~--~~ 510 (662)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+..... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566667777777777777776664321110 123334455667778888888887766431111 11 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPN-----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
+|+.+...|...|++++|...|++..+. ...|+ ..+|..+...|...|++++|+..+++..+..+. .+...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~---~~~~~ 233 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMA 233 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh---cCcHH
Confidence 7899999999999999999999998731 01222 258889999999999999999999999854432 12222
Q ss_pred -cHHHHHHHHHHHHccCchHHH-HHHHHHHH
Q 038801 585 -EHNLVDAFLYALVKGGFFDAV-MQVVEKSQ 613 (662)
Q Consensus 585 -~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 613 (662)
-..+|..+..++.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 257888899999999999999 77788763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=6.6e-07 Score=82.09 Aligned_cols=205 Identities=12% Similarity=0.051 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hh
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL---GV 405 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~ 405 (662)
+...+..+...+.+.|++++|+..|+++....+.+. .....+..+..++.+.|++++|...|+++++.. +.+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHH
Confidence 445566666677777777777777777765322211 011244556667777777777777777776643 1111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
+..+..++.+.|.. .+ ..|..+...+...|++++|...|+++++.. |.+.........
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~---- 138 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKR---- 138 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHH----
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHH----
Confidence 33333334332210 00 011122233344567777777777777653 222222211100
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYF 561 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~ 561 (662)
...+...+. ...-.+...|.+.|++++|...|+++++. .|+. ..+..+..++.+.|+++
T Consensus 139 ------l~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 139 ------LVFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ------HHHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcH
Confidence 000000000 01234556677778888888888777764 4442 35667777777778888
Q ss_pred HHHHHHHHHHHhh
Q 038801 562 SVLMMWHEIKRKI 574 (662)
Q Consensus 562 ~a~~~~~~m~~~~ 574 (662)
+|++.++.+....
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 8887777666443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=83.36 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (662)
....+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 3334444455555555554444322 22344444455555555555555555554433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-07 Score=101.23 Aligned_cols=172 Identities=13% Similarity=0.001 Sum_probs=143.5
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 038801 379 VNLGLSDKAHSILDEMN--------ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASI 449 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 449 (662)
...|++++|.+.+++.. +.. +.+...+..+..+|.+.|++++|.+.|++..+. .| +...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 432 556788889999999999999999999999886 34 6778899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
..|++++|...|++..+.. +.+...+..+...+.+.|++++ ++.|++..+..+- +...|..+..+|.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG--VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999886 5667889999999999999999 9999998874222 4567899999999999999999
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 038801 530 RTLRRMIFLQFEPND-QTYLSLINGYVTAEQ 559 (662)
Q Consensus 530 ~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~ 559 (662)
+.|++..+. .|+. ..|..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999874 6775 577778888766555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-06 Score=78.89 Aligned_cols=173 Identities=11% Similarity=0.029 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----CHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ----DFQSAFSLF 461 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 461 (662)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677776654 56677777777888888888888888887764 56667777777776 5 788888888
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCc-cchhhHHHHHHHHHh----cCCHHHHHHHH
Q 038801 462 RDMREARIYDLKGSYLTIMTGLME----NHRPELMAAFLDEVVEDPRVE-VKTHDWNSIIHAFCK----AGRLEDAKRTL 532 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 532 (662)
++..+.| +...+..|...|.. .++.++|..+|++..+. +.. .+...+..|...|.. .++.++|...|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8887765 33456666666766 77888888888888775 221 125577888888888 78999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHH
Q 038801 533 RRMIFLQFEPNDQTYLSLINGYVTA-E-----QYFSVLMMWHEIK 571 (662)
Q Consensus 533 ~~m~~~~~~p~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~ 571 (662)
++..+. ..+...+..|...|... | ++++|+..|++..
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 999875 23445677777777653 3 8999999999888
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=100.87 Aligned_cols=173 Identities=9% Similarity=0.017 Sum_probs=113.7
Q ss_pred HHcCCHHHHHHHHHHHH--------hcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Q 038801 267 ALKGLQEKIVELESLMN--------EFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVK 338 (662)
Q Consensus 267 ~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~ 338 (662)
...|++++|.+.++... +.. +.+...+..+...|...|++++|.+.|.+.++..+. +...|..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-----RWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-----CHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-----hHHHHHHHHH
Confidence 56677777777777776 321 334566777777777777777777777777765322 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 038801 339 GFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (662)
++...|++++|++.|++..++.+. +...+..+..++...|++++ .+.|++..+.+ +.+...|..+..+|.+.|+
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPG----ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCC
Confidence 777777777777777777654433 34456667777777777777 77777777654 4456677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCC
Q 038801 419 TAEATQLVMDISSSGLQLD-VGNYDALIEASITSQD 453 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 453 (662)
+++|.+.|++..+. .|+ ...|..+..++...|+
T Consensus 550 ~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 550 RVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 77777777776654 343 4555556666655444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-07 Score=87.86 Aligned_cols=158 Identities=8% Similarity=-0.022 Sum_probs=72.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHcC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL-IEASITS 451 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~ 451 (662)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++... .|+....... ...+...
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence 34444455555555555555555442 334445555555555555555555555555443 2332211111 1123344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++.++|...|++..+.. |.+...+..+...+...|++++|...+.++.+..+-..+...+..++..|...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 44455555555554443 33344444444455555555555555544444322222233444444555555555444444
Q ss_pred HHH
Q 038801 532 LRR 534 (662)
Q Consensus 532 ~~~ 534 (662)
|++
T Consensus 278 ~r~ 280 (287)
T 3qou_A 278 YRR 280 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-07 Score=80.92 Aligned_cols=156 Identities=12% Similarity=0.112 Sum_probs=72.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHH-HHhc
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHA-FCKA 522 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 522 (662)
+...+.+.|++++|...|++..+.. |.+...+..+...+...|++++|...+++.....+ +...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHHHHHhh
Confidence 3344444455555555554444332 22333444444444444444444444444433211 11111111111 1111
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccC
Q 038801 523 GRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGG 600 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 600 (662)
++..+|...+++..+. .|+ ...+..+..++...|++++|+..|+++. ...-.+ +...+..+..++...|
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNIL-------KVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------TTCTTTTTTHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-------HhCcccChHHHHHHHHHHHHHhC
Confidence 2223355566665553 343 4556666666666666666666666666 222111 1335555666666666
Q ss_pred chHHHHHHHHHH
Q 038801 601 FFDAVMQVVEKS 612 (662)
Q Consensus 601 ~~~~A~~~~~~m 612 (662)
+.++|...+++.
T Consensus 159 ~~~~A~~~y~~a 170 (176)
T 2r5s_A 159 QGNAIASKYRRQ 170 (176)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 666666666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-05 Score=76.46 Aligned_cols=218 Identities=7% Similarity=-0.046 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH----Hhc
Q 038801 308 ESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG--NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC----VNL 381 (662)
Q Consensus 308 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~----~~~ 381 (662)
++|++++..++.-.+. +...|+.--..+...| ++++++++++.+....++ +..+++.--..+ ...
T Consensus 50 ~~aL~~t~~~L~~nP~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk----~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 50 ERALHITELGINELAS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK----NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc----cHHHHHHHHHHHHHHHHhc
Confidence 4566665555554322 4455665555566666 677777777776653333 222333321122 333
Q ss_pred ---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC---
Q 038801 382 ---GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA--EATQLVMDISSSGLQLDVGNYDALIEASITSQD--- 453 (662)
Q Consensus 382 ---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 453 (662)
++++++.++++.+.+.. +-|-.+|+.-..++.+.|+++ ++++.++++.+.... |...|+.....+.+.|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 67778888888887764 556777777777777777777 888888888876433 66777777767766666
Q ss_pred ---HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHHHhhCC-CCccchhhHHHHHHHHHhcCCHHHH
Q 038801 454 ---FQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL-MAAFLDEVVEDP-RVEVKTHDWNSIIHAFCKAGRLEDA 528 (662)
Q Consensus 454 ---~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A 528 (662)
++++++.+++++... +.+...|+.+-..+.+.|+... +..+..++.... .-..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 778888888877765 5566677777777777666433 444555544321 0122456677777777777788888
Q ss_pred HHHHHHHHh
Q 038801 529 KRTLRRMIF 537 (662)
Q Consensus 529 ~~~~~~m~~ 537 (662)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.5e-06 Score=79.43 Aligned_cols=166 Identities=9% Similarity=0.007 Sum_probs=114.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCC-CCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc----hhhHHHH
Q 038801 445 IEASITSQDFQSAFSLFRDMREARI-YDLK----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK----THDWNSI 515 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 515 (662)
+..+...|++++|..++++..+... .++. ..+..+...+...+++++|...+++..+.....++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 1111 12223444555566777777777776653122222 3368999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIF----L-QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNL 588 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~ 588 (662)
...|...|++++|...|+++.+ . +..+.. .+|..+...|.+.|++++|+..+++..+..+. .+..+. ..+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~---~~~~~~~~~~ 238 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIGQL 238 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---cCcHHHHHHH
Confidence 9999999999999999999884 1 222222 48889999999999999999999999865542 233333 478
Q ss_pred HHHHHHHHHccCc-hHHHHHHHHHHH
Q 038801 589 VDAFLYALVKGGF-FDAVMQVVEKSQ 613 (662)
Q Consensus 589 ~~~l~~~~~~~g~-~~~A~~~~~~m~ 613 (662)
|..+..++.+.|+ +++|.+.++++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8899999999995 699999998874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.2e-07 Score=84.86 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=114.4
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc
Q 038801 289 SQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR 368 (662)
Q Consensus 289 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 368 (662)
.+...+..+...+...|++++|...|.+.+...+. +...+..+...+.+.|++++|...++++.. ..|+.
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-----~~p~~ 184 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPL-----QDQDT 184 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-----GGCSH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCch-----hhcch
Confidence 34555666777777788888888887777766433 566777777888888888888888876543 23333
Q ss_pred chHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 038801 369 SVGFG-IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIE 446 (662)
Q Consensus 369 ~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~ 446 (662)
..... ....+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++.
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 22222 2233556667777788887777764 5567778888888888888888888888887763221 2567778888
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 038801 447 ASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~ 465 (662)
.|...|+.++|...|++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 8888888888887777654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-06 Score=78.17 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC----CHHHHHHHH
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENH----RPELMAAFL 496 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 496 (662)
+|...|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + +.++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666666554 22334444444444 3 455555555
Q ss_pred HHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHH
Q 038801 497 DEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPN---DQTYLSLINGYVT----AEQYFSVLM 565 (662)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~----~~~~~~a~~ 565 (662)
++..+. + +...+..|...|.. .+++++|.+.|++..+.| |+ ...+..|...|.. .+++++|+.
T Consensus 77 ~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 77 EKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 555432 1 22334444444443 445555555555555432 21 3455555555555 445555555
Q ss_pred HHHHHH
Q 038801 566 MWHEIK 571 (662)
Q Consensus 566 ~~~~m~ 571 (662)
.|++..
T Consensus 151 ~~~~A~ 156 (212)
T 3rjv_A 151 YFKGSS 156 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.4e-07 Score=95.11 Aligned_cols=153 Identities=11% Similarity=-0.038 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+..+ .+...|..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44445555555444432 22334444455555555555555555555544211 1244566666666666777777777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHcc---CchHHHH
Q 038801 532 LRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKG---GFFDAVM 606 (662)
Q Consensus 532 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~ 606 (662)
|++..+. .| +...+..+..++...|++++|++.+++..+ ..| +...+..+..++... |++++|.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---------LLPEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 7666654 33 345666666666667777777777776662 223 235556666666666 6777777
Q ss_pred HHHHHHHhCCCC
Q 038801 607 QVVEKSQEMKVF 618 (662)
Q Consensus 607 ~~~~~m~~~~~~ 618 (662)
+.+++..+.++.
T Consensus 149 ~~~~~al~~~p~ 160 (568)
T 2vsy_A 149 AQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHhcCCc
Confidence 777666655544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.8e-07 Score=94.04 Aligned_cols=154 Identities=10% Similarity=0.000 Sum_probs=95.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038801 269 KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG 348 (662)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 348 (662)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|.+.++..+. +...|..+...|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-----HPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-----CHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHH
Confidence 366777777777776653 334677777777888888888888887777765432 56677777777788888888
Q ss_pred HHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc---CCHHHHHHH
Q 038801 349 LANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE---HRTAEATQL 425 (662)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~ 425 (662)
|.+.|++..++.+. +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.
T Consensus 76 A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 76 AAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 88888777654322 34456667777777777777777777777654 34566777777777777 777777777
Q ss_pred HHHHHhCC
Q 038801 426 VMDISSSG 433 (662)
Q Consensus 426 ~~~m~~~g 433 (662)
+++..+.+
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 77777653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.2e-06 Score=78.42 Aligned_cols=216 Identities=7% Similarity=0.004 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----HcC---CCHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH--RTAEATQLVMDISSSGLQLDVGNYDALIEAS----ITS---QDFQ 455 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 455 (662)
++|.+.++.++..+ +-+..+|+.--.++...| ++++++++++.+.....+ +...|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666666543 334445555555555555 666666666666654222 344454444333 333 4556
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC------HHH
Q 038801 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE--LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR------LED 527 (662)
Q Consensus 456 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 527 (662)
+++.+++++.+.. +-+...|+.-.-.+.+.|..+ ++.++++++.+... -|...|+.....+.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~--~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL--KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666665543 333344444444444445444 55555555554311 133344444444444443 555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhhcccCCCC--CcccHHHHHHHHHHHHccCchHH
Q 038801 528 AKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS-VLMMWHEIKRKISTDGQKG--IKFEHNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 604 (662)
+++.+++++... .-|...|+-+...+.+.|+..+ +..+.+++. +.+ -..+...+..+..++.+.|+.++
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV-------DLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE-------EGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH-------hccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 555555555532 1133455555555555555332 223333333 111 01133444445555555555555
Q ss_pred HHHHHHHHH
Q 038801 605 VMQVVEKSQ 613 (662)
Q Consensus 605 A~~~~~~m~ 613 (662)
|.++++.+.
T Consensus 277 A~~~~~~l~ 285 (306)
T 3dra_A 277 SRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-06 Score=79.76 Aligned_cols=171 Identities=8% Similarity=-0.029 Sum_probs=127.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT----HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE-PN----DQTYL 548 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 548 (662)
..+..+...|++++|..++++..+.....|+. ..+..+...+...|++++|...|++..+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667889999999999999998865555552 23445777777888999999999999974222 23 23799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhC----CCC---CC
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEM----KVF---VD 620 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~---p~ 620 (662)
.+..+|...|++++|+..++++.+..+.. .+..+.. .++..+...|.+.|++++|.+++++..+. +.. +.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999655432 1233333 58889999999999999999999987543 222 22
Q ss_pred HHhHHHHHHHHhhh-hhhhHHHHHHHHhhHH
Q 038801 621 KWKYKQAFMENHKK-LKVAKLRKRNFKKMEA 650 (662)
Q Consensus 621 ~~~~~~~~~~~~~~-~~~a~~~~~~~~~l~p 650 (662)
.+..+...+...|+ .+.|...+++++++-.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 44444555566674 5999999998887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.4e-07 Score=77.82 Aligned_cols=118 Identities=8% Similarity=-0.095 Sum_probs=56.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 342 QNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..|++++|++.++.... ..| +...+..+...|...|++++|.+.|++.++.. +-+..+|..+..+|.+.|+++
T Consensus 9 ~~~~~e~ai~~~~~a~~-----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP-----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSC-----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HcChHHHHHHHHHHhcc-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34455555555554421 112 22233344555555555555555555555543 334455555555555555555
Q ss_pred HHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHH-HHHHHHc
Q 038801 421 EATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSL-FRDMREA 467 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~ 467 (662)
+|...|++..+. .| +...|..+...|.+.|++++|.+. +++..+.
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 555555555544 22 344455555555555555444333 3444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-07 Score=78.68 Aligned_cols=140 Identities=9% Similarity=-0.077 Sum_probs=72.2
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN 380 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~ 380 (662)
+...|++++|+..+...++..+. +...+..+...|.+.|++++|++.|++..++.|. +...+..+..++..
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----DPKAHRFLGLLYEL 77 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHH
Confidence 33445555555555444443111 2234445555566666666666666665543322 33345555556666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCC-ChhhHHHHHHHHHcCC
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQL-VMDISSSGLQL-DVGNYDALIEASITSQ 452 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~~-~~~~~~~li~~~~~~g 452 (662)
.|++++|...|++.++.. +-+...+..+..+|.+.|++++|.+. +++..+. .| +...|......+...|
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 666666666666665543 33455666666666666666554433 3555543 33 3444554444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-07 Score=85.81 Aligned_cols=129 Identities=10% Similarity=-0.071 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc--HHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE--HNLVD 590 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~ 590 (662)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-------~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-------KWP-DKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-------GCS-CHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-------ccC-CcccHHHHHH
Confidence 34555666777777777777776653 3544444455556666777777777776443 111 111 23556
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCC----CHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFV----DKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
.+..++.+.|++++|+..|++.......| +.+.+....+...|+.++|...++++++.+|.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66777777777777777777776433213 24444444556667777777777777777665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-06 Score=77.16 Aligned_cols=164 Identities=9% Similarity=-0.035 Sum_probs=97.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 493 (662)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------ 57 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ------------------------ 57 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH------------------------
Confidence 3456666666644444321 112344555566666666666666666665544210
Q ss_pred HHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 038801 494 AFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEP--NDQTYLSLINGYVTAEQYFSVLMM 566 (662)
Q Consensus 494 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 566 (662)
..+..+ ...++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...
T Consensus 58 --------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 129 (203)
T 3gw4_A 58 --------KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE 129 (203)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 111111 2346777777888888888888888776652 1111 124577777888888888888888
Q ss_pred HHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 567 WHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 567 ~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+++..+..+. .+... -..++..+..++...|++++|.+.+++..
T Consensus 130 ~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 130 YEKSLVYAQQ---ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8888754332 12111 12456777788888888888888887763
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.1e-06 Score=78.25 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=107.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---CC--cccH
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLD-----VGNYDALIEASITSQDFQSAFSLFRDMREARIY---DL--KGSY 476 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~ 476 (662)
...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3345556666667666666666555421111 112333445566667777777777776643211 11 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh---hCCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHH
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVV---EDPRVEV--KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQT 546 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~ 546 (662)
+.+...|...|++++|...+++.. +..+..+ ...+|..+...|...|++++|...+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 666777777777777777777765 2212212 2257888899999999999999999988753 11111 468
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHHHhh
Q 038801 547 YLSLINGYVTAEQYFSV-LMMWHEIKRKI 574 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a-~~~~~~m~~~~ 574 (662)
|..+..+|...|++++| ...+++.....
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88899999999999999 77788877433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-06 Score=75.23 Aligned_cols=137 Identities=11% Similarity=0.037 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
+..+...+...|++++|...+++.. .|+...|..+..+|...|++++|.+.|++..+.. ..+...|..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3445556667777777777777653 3456788889999999999999999999988753 235578889999999
Q ss_pred hcCCHHHHHHHHHHHHHhhcccC-----CCC--CcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDG-----QKG--IKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~-----~~~--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|++++|++.|+++.+..+... ..+ ..|+. ..+..+..++.+.|++++|.+.++++.+..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999985433110 000 33433 77888999999999999999999999887665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.8e-06 Score=74.87 Aligned_cols=143 Identities=8% Similarity=-0.061 Sum_probs=74.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+...+...|++++|...|++.. .++...+..+..+|.+.|++++|...|++..+.. ..+...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444455555555555554442 3344555555555555555555555555554432 113344455555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHH
Q 038801 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++++|...|++..+.........+ ...| ....| ....+..+..+|...|++++|.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~-------~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDY-------KILG---------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEEC-------GGGT---------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHHH-------HHhc---------------cccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 555555555555443211000000 0000 00222 235678888889999999999999
Q ss_pred HHHHHhCCCCCCH
Q 038801 532 LRRMIFLQFEPND 544 (662)
Q Consensus 532 ~~~m~~~~~~p~~ 544 (662)
|++..+. .|+.
T Consensus 144 ~~~al~~--~p~~ 154 (213)
T 1hh8_A 144 LALATSM--KSEP 154 (213)
T ss_dssp HHHHHTT--CCSG
T ss_pred HHHHHHc--Cccc
Confidence 9998874 5553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=8.3e-07 Score=75.03 Aligned_cols=99 Identities=15% Similarity=0.030 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-H
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-H 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~ 586 (662)
...+..+...+.+.|++++|...|++..+. .| +...|..+..+|...|++++|+..|+++. .+.|+ .
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al---------~l~P~~~ 104 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF---------ALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHSSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH---------hhCCCCc
Confidence 456777777888888888888888888875 45 45678888888888888888888888888 34444 4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|..+..++.+.|++++|...|++..+..+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 67778888888888888888888888776544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.3e-06 Score=72.13 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLS--LINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
..|..+..++...|++++|.+.|++..+. .| +...+.. +...+...|++++|++.+++.....+
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 45556666666666666666666666653 23 2333322 23335556677777777666654443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=69.21 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-H
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-H 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~ 586 (662)
...+......|.+.|++++|++.|++.++. .| +...|..+..+|.+.|++++|+..+++.. .+.|+ .
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------~~~p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCI---------RLDSKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH---------Hhhhhhh
Confidence 345677788888888888888888888875 44 55788888888888888888888888888 23343 4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|..+..++...|++++|++.+++..+..+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 67788888888888888888888888776554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.8e-06 Score=73.70 Aligned_cols=86 Identities=14% Similarity=0.032 Sum_probs=54.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCH
Q 038801 380 NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNYDALIEASITSQDF 454 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~ 454 (662)
..|++++|.++++.+.. .......++..+...+...|++++|...+++..+. +..+ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45777777775444433 11234567777777888888888888888776552 1122 245566677777778888
Q ss_pred HHHHHHHHHHHH
Q 038801 455 QSAFSLFRDMRE 466 (662)
Q Consensus 455 ~~A~~~~~~m~~ 466 (662)
++|...+++..+
T Consensus 83 ~~A~~~~~~al~ 94 (203)
T 3gw4_A 83 DAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-06 Score=70.99 Aligned_cols=96 Identities=6% Similarity=-0.032 Sum_probs=66.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 038801 472 LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSL 550 (662)
Q Consensus 472 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 550 (662)
+...+..+...+.+.|++++|+..|++.....+ -+...|..+..+|...|++++|...|++..+. .|+ ...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHH
Confidence 344566666777777777777777777766422 23456777777777777777777777777764 443 3567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 038801 551 INGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~ 571 (662)
..+|...|++++|+..|++..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-06 Score=78.26 Aligned_cols=187 Identities=8% Similarity=-0.093 Sum_probs=116.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC-ChhhHHHH-------HHHHHcCCCHHHHHHHHHHHHHcCCCCC--------------
Q 038801 415 KEHRTAEATQLVMDISSSGLQL-DVGNYDAL-------IEASITSQDFQSAFSLFRDMREARIYDL-------------- 472 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-------------- 472 (662)
..++.+.|.+.|.++... .| ....|..+ ...+.+.++..+++..+..-.+. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 356666666666666655 33 33455544 34444444444444444443331 111
Q ss_pred --------cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 473 --------KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 473 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
......+...+...|++++|.++|+.+... .|+....-.+...+.+.|++++|+..|+.... .|+.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~ 167 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDK 167 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCc
Confidence 012334556677788888888888777653 23322445555577888888888888876654 2322
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc--HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 545 ----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE--HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 545 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..+..+..++...|++++|+..|++.. .....|. .........++.+.|+.++|...|+++...++.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-------~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEAN-------DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-------cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 366777888888888888888888887 3333253 235566667788888888888888888776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-05 Score=68.62 Aligned_cols=131 Identities=15% Similarity=0.030 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNL 588 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~ 588 (662)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|+..+++..+ ..| +...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~ 83 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---------LDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCcccHHH
Confidence 346666677777777888877777777642 22456777777777777888888877777772 223 3456
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHH--HHHHHHhhhhhhhHHHHHHHHhhHH
Q 038801 589 VDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYK--QAFMENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~--~~~~~~~~~~~~a~~~~~~~~~l~p 650 (662)
+..+..++.+.|++++|.+.++++.+..+. +..+..+ ...+...|+.+.|....++..++-+
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 677777777778888888888777665543 2233222 1123445777777777766655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00026 Score=67.97 Aligned_cols=152 Identities=9% Similarity=0.002 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-
Q 038801 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA--------EATQLVMDISSSGLQLDVGNYDALIEASITSQD- 453 (662)
Q Consensus 383 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 453 (662)
+++++.++++.+.+.. +-|-..|+.-..++.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 3444444444444432 233334433333333333333 566666666655322 55566666555555554
Q ss_pred ------HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhCC----
Q 038801 454 ------FQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP--------------------ELMAAFLDEVVEDP---- 503 (662)
Q Consensus 454 ------~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~---- 503 (662)
++++++.+++++... +.+...|+.+-..+.+.|+. ........++....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 456666666666554 44445555544444444432 11122222222110
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 504 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.-.++......|+..|...|+.++|.++++.+.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0123456667777777777777777777777764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.9e-06 Score=78.57 Aligned_cols=190 Identities=7% Similarity=-0.065 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
.+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...+++..+... -+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34445556666677777777776666643 33566777777777777777777777777766521 24566777777777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
..|++++|...|++..+.+ +.+...+...+....+.. .+..... .... ....+......+.. + ..|+.++|.
T Consensus 84 ~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKRWNS-IEER-RIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHHHHH-HHHT-CCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHHHHH-HHHH-HHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 7888888888777776543 111112222222222111 1111111 1111 22233333333322 2 368899999
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 038801 530 RTLRRMIFLQFEPNDQ-TYLSLINGYVTA-EQYFSVLMMWHEIK 571 (662)
Q Consensus 530 ~~~~~m~~~~~~p~~~-~~~~li~~~~~~-~~~~~a~~~~~~m~ 571 (662)
+.+++..+. .|+.. ....+...+.+. +.+++|.++|+++.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999888864 66654 333443334443 66888998888776
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.8e-06 Score=79.93 Aligned_cols=193 Identities=9% Similarity=-0.045 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
+...+..+...+.+.|++++|...|++..+. .| +...|..+..+|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567778888999999999999999999886 44 67888889999999999999999999998775 56667888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 560 (662)
.++...|++++|...|.+..+..+-.+ ..+...+....+. .++... ..........+......+.. + ..|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 999999999999999988766311111 1111222222211 111111 11222223344444333322 2 25888
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHcc-CchHHHHHHHHHHHh
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKG-GFFDAVMQVVEKSQE 614 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 614 (662)
++|++.+++.. ...|+. .....+...+.+. +.+++|.++|+++.+
T Consensus 152 ~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNH---------EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGG---------TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhh---------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 89988888777 345554 3334444444444 678889999988754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-06 Score=70.45 Aligned_cols=96 Identities=7% Similarity=-0.083 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
..+..+...+.+.|++++|...|++..... ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555555566666666655555442 1144455555555555566666666665555543 33334444455555
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 038801 484 MENHRPELMAAFLDEVVE 501 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~ 501 (662)
...|+.++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-06 Score=68.32 Aligned_cols=110 Identities=13% Similarity=0.001 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-H
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-H 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~ 586 (662)
...+..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++..+..+.. ....+. .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET--RADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc--chhhHHHH
Confidence 346778899999999999999999999985 55 45789999999999999999999999998433311 011111 2
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHH
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 622 (662)
.+|..+..++...|++++|++.+++..+..+.|+..
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 477888889999999999999999988766665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-05 Score=63.75 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
++..+...+.+.|++++|..+|+++.+.. ..+...+..+...+...|++++|...|+++.+
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444444444444444444443321 11233344444444444444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=64.78 Aligned_cols=90 Identities=10% Similarity=-0.014 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 455 (662)
..+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|+..|++..+... .+...|..+..+|...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCCCHH
Confidence 33334444444444444443332 22334444444444444444444444444443311 12334444444444444444
Q ss_pred HHHHHHHHHHHc
Q 038801 456 SAFSLFRDMREA 467 (662)
Q Consensus 456 ~A~~~~~~m~~~ 467 (662)
+|.+.|++..+.
T Consensus 99 ~A~~~~~~al~l 110 (126)
T 4gco_A 99 KAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.1e-06 Score=69.71 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-c
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-E 585 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~ 585 (662)
+...+..+...+.+.|++++|...|++.... .| +...|..+..+|...|++++|+..|+++. .+.| +
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------~l~p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA---------VMDIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHSTTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------hcCCCC
Confidence 3456777888888999999999999988875 44 56788888888999999999999999988 2334 3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+..++...|++++|.+.+++..+..+.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467788888899999999999999988766543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-05 Score=70.17 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=66.4
Q ss_pred hcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH-HHhc
Q 038801 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA-CVNL 381 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~-~~~~ 381 (662)
..|++++|...+.+.+...+. +...|..+...|...|++++|.+.|++...+.+. +...+..+..+ +...
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE----NAELYAALATVLYYQA 92 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhc
Confidence 345566666665555554321 4556666666666666666666666666543222 22334444445 4456
Q ss_pred CCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 382 GLS--DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 382 ~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
|++ ++|...++++.+.. +.+...+..+..+|...|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 665 66666666666543 334555666666666666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-05 Score=62.79 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+.. ..+..++..+...|.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2223334444444444444444444444443321 112345556666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 038801 521 KAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~ 538 (662)
..|++++|...|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 666666666666666653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00047 Score=66.27 Aligned_cols=224 Identities=8% Similarity=-0.028 Sum_probs=160.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc-C
Q 038801 340 FLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG-LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE-H 417 (662)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g 417 (662)
..+.+..++|+++++++..+.+. +..+++.--..+...| .++++.++++.++... +-+..+|+.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33445567899999998765443 2334555555556667 5999999999999875 56778888888888877 7
Q ss_pred -CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 418 -RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ--------SAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 418 -~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
++++++++++++.+...+ |...|+.-.-.+.+.|.++ ++++.++++++.. +-+...|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 899999999999987432 7778877766666666666 9999999999986 5556678887777777775
Q ss_pred -------HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC--
Q 038801 489 -------PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRL--------------------EDAKRTLRRMIFLQ-- 539 (662)
Q Consensus 489 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-- 539 (662)
++++.+.+++.....+ -|...|+-+-..+.+.|+. ....+...++...+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 6888888888876422 2556777777677766653 23333333443321
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 540 ---FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 540 ---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
-.+.......|.+.|...|+.++|.++++.+.+
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 025667899999999999999999999999873
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.2e-05 Score=64.47 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+.. ..+...+..+..++.+.|++
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhH
Confidence 333333444444444444433322 2233334444444444444444444444443331 11233344444444444444
Q ss_pred HHHHHHHHHHHH
Q 038801 455 QSAFSLFRDMRE 466 (662)
Q Consensus 455 ~~A~~~~~~m~~ 466 (662)
++|...|++..+
T Consensus 101 ~~A~~~~~~~~~ 112 (133)
T 2lni_A 101 TKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-05 Score=68.26 Aligned_cols=100 Identities=11% Similarity=-0.031 Sum_probs=74.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
+...|..+...+.+.|++++|.+.|++.++. .| +...|..+..+|...|++++|+..+++..+ +.|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------~~p~~ 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATV---------VDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------hCCCC
Confidence 3456777777888888888888888888774 34 556777888888888888888888888872 2343
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...|..+..++.+.|++++|.+.+++..+..+.
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 567777788888888888888888887766554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=65.43 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNL 588 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~ 588 (662)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|+..++++....+.. .+..+. ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHHH
Confidence 467888889999999999999999998753 3356788899999999999999999999998433211 000111 567
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhH
Q 038801 589 VDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 624 (662)
+..+..++.+.|++++|.+.++++.+..+.++.+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 117 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888899999999999999999999887665444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.5e-05 Score=76.50 Aligned_cols=170 Identities=8% Similarity=-0.079 Sum_probs=105.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCccchhh
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARI-YDLK----GSYLTIMTGLMENHRPELMAAFLDEVVE----DPRVEVKTHD 511 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 511 (662)
+..+...|...|++++|.+++.++.+.-- .++. .+.+.+-..+...|+.+.+..++.+... ......-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 34455555555555555555555443210 0110 0111112222334556666666555432 1111222457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
+..+...|...|++++|..++++.... +-.+. ...|..++..|...|++++|..++++....... .+..+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~ 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS---IYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc---CCCchHH
Confidence 788999999999999999999887752 11222 258889999999999999999999998854332 122222
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 586 -HNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 586 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
..++..++..+...|++++|...+.+..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2567777788889999999998887764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00032 Score=71.25 Aligned_cols=170 Identities=7% Similarity=-0.016 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CC-CCCccc
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGL-QLDV----GNYDALIEASITSQDFQSAFSLFRDMREA----RI-YDLKGS 475 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~ 475 (662)
+..+...|.+.|++++|.+++..+...-- .++. ...+.+-..+...|+.++|..++++.... +. ..-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566666667777777666665543210 1111 12222333334456777777777665532 11 112235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CC-C--HH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL--QF-EP-N--DQ 545 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~ 545 (662)
+..+...+...|++++|..+++++... .+-++ ...+|..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566667777777777777777665432 11111 2456778888888888888888888776642 11 12 1 13
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
.+..+...+...|++++|...|.+..+...
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 566666777778888888888887775544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=64.81 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHN 587 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~ 587 (662)
...+..+...+...|++++|...|++..... ..+...+..+...+...|++++|+..+++... ..| +..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~ 81 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC---------IDPAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---------cCccCHH
Confidence 4456667777777788888888887777642 22456777777777777888888888877772 223 345
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.+..+..++.+.|++++|.+.+++..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 667777777788888888888877766554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.4e-05 Score=63.32 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=62.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 401 VGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
.+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 3455666677777777777777777777776521 255667777777777777777777777776653 33334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 038801 481 TGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~ 501 (662)
..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=69.78 Aligned_cols=117 Identities=5% Similarity=-0.024 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCH--HHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA-SITSQDF--QSAF 458 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~A~ 458 (662)
|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44444444444444432 23344455555555555555555555555444321 133344444444 4444554 5555
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 459 SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
..|++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555554442 22233344444444444444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-05 Score=63.62 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
+..+...+...|++++|...|++..
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333444444444444444333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=75.58 Aligned_cols=128 Identities=8% Similarity=-0.034 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----------------DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
...|..+...|.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778888888899999999999888875 343 47899999999999999999999999993
Q ss_pred hhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhh-HHHHHHHHh
Q 038801 573 KISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVA-KLRKRNFKK 647 (662)
Q Consensus 573 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a-~~~~~~~~~ 647 (662)
+.| +...+..+..++...|++++|+..|+++.+..+. +..+..+...+...|+.+.+ +..+++++.
T Consensus 225 ---------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 ---------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 4578889999999999999999999999887765 34555555555667888777 445666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-05 Score=64.10 Aligned_cols=96 Identities=6% Similarity=0.023 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HN 587 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~ 587 (662)
..|..+...+.+.|++++|...|++.++. .| +...|..+..++...|++++|+..+++..+ +.|+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------~~p~~~~ 73 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE---------KDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------hCCCcHH
Confidence 34566666777777777777777777764 33 456777777777777777777777777772 2333 45
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.+..+..++...|++++|.+.+++..+..
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 66677777777777777777777776544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-05 Score=76.14 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD--------------VGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566666667777777777777776665421111 2445555555555555555555555554432
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTY 547 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~ 547 (662)
+. +...|..+..+|...|++++|...|++.++. .| +...+
T Consensus 227 -p~------------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~ 267 (336)
T 1p5q_A 227 -SN------------------------------------NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAK 267 (336)
T ss_dssp -TT------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHH
T ss_pred -CC------------------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 22 2344555555666666666666666666553 33 33455
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 038801 548 LSLINGYVTAEQYFSV-LMMWHEIKRK 573 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a-~~~~~~m~~~ 573 (662)
..+..++...|++++| ..+++.|...
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666555 3344444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.5e-05 Score=60.95 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHN 587 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~ 587 (662)
...+..+...+...|++++|...|++..... ..+...+..+...+...|++++|...+++..+ ..| +..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~ 73 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---------LKPDWGK 73 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HCTTCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------hCcccHH
Confidence 3456677777788888888888888877642 22556777777888888888888888888772 223 346
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+..+..++.+.|++++|.+.+++..+.++.
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 6777777888888888888888887766554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-05 Score=61.83 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc---c
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF---E 585 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p---~ 585 (662)
...|..+...+...|++++|...|++..+.. ..+...|..+...+...|++++|++.+++..+ ..| +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN---------VIEDEYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------TSCCTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------hCcccch
Confidence 4456777788888888999998888888753 23556788888888888999999999988883 223 3
Q ss_pred HHHHHHHHHHHHcc-CchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKG-GFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+..++.+. |++++|.+.++++.+..+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 56778888888888 9999999999888776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=65.59 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EH 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~ 586 (662)
...+..+...+.+.|++++|...|++.... .| +...|..+..++...|++++|+..|++... +.| +.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------~~p~~~ 86 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL---------MDINEP 86 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCT
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------cCCCCc
Confidence 445666777888889999999999988875 44 557788888888889999999999998882 334 34
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
..+..+..++...|++++|.+.+++..+..+
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6777788888899999999999988876554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-05 Score=66.29 Aligned_cols=96 Identities=13% Similarity=-0.035 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
.+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++..+... -+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34444455555555555555555555442 23444555555555555555555555555544421 13444555555555
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 038801 450 TSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~ 467 (662)
..|++++|...|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.7e-05 Score=62.17 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
.+..+...+.+.|++++|+..|++..+. .| +...|+.+..+|.+.|++++|++.+++.++... .+...+..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~----- 81 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKL----- 81 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHH-----
Confidence 4455555666666666666666665554 22 345555555556666666666665555544320 00000000
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYL 548 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 548 (662)
-..+|..+..++...|++++|++.|++.++. .||.....
T Consensus 82 ------------------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 82 ------------------------IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 0135666777777888888888888887763 56654443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0021 Score=61.42 Aligned_cols=192 Identities=10% Similarity=-0.003 Sum_probs=130.1
Q ss_pred HHhcCCch-hHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCc----------HHHHHHHHHHHHHhhhhhhcCCCCccH
Q 038801 152 MRNANTAA-PAFALVKCMFKNRYFMPFELWGGFLVDICRKNSN----------FVAFLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 152 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
..+.|.++ +|+.+++.++... |...+..+.-..+....+. +++++.+++.+... -+.+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PKny 108 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSY 108 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCCCH
Confidence 34566665 7899999998753 5554433322222222222 67889999998773 34567
Q ss_pred HHHHHHHHHHhccCC--ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCcHHhHHHH
Q 038801 221 YACNAALEGCCYGLQ--SVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL-QEKIVELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (662)
.+|+.---.+..- + .+++++.+++.+.+.. +-|-..|+.-.-++...|. ++++.+.++.+.+.. +-|...|+..
T Consensus 109 ~aW~hR~wlL~~l-~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R 185 (331)
T 3dss_A 109 GTWHHRCWLLSRL-PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred HHHHHHHHHHhcc-CcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 7787666655554 6 4899999999998865 4466677776667777888 589999999999876 4667777776
Q ss_pred HHHHHhc--------------CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 038801 298 ISGYVKL--------------GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN-----------GNVKGLANL 352 (662)
Q Consensus 298 i~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~~~ 352 (662)
...+.+. +.++++++.+.+.+...+. |...|+-+-..+.+. +..+++++.
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-----d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-----DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 6665554 4577888888888876544 778887665555544 345566666
Q ss_pred HHHHHHhCC
Q 038801 353 IIEAQKLEP 361 (662)
Q Consensus 353 ~~~m~~~~~ 361 (662)
++++.++.|
T Consensus 261 ~~elle~~p 269 (331)
T 3dss_A 261 CKELQELEP 269 (331)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhhCc
Confidence 666655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.5e-05 Score=65.82 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
.++..+...|...|++++|.+.+++..+..- ..+ ...+..+...+...|++++|.+.+++..+..+. .+..+
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 126 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---ccchH
Confidence 4677788888888999999998888775210 111 346778888888999999999999988855442 22222
Q ss_pred c-HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 585 E-HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 585 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
. ..++..+...+...|++++|.+.+++..+
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 36677888888999999999999988754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.2e-06 Score=74.25 Aligned_cols=93 Identities=5% Similarity=-0.093 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNL 588 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~ 588 (662)
..|..+..+|...|++++|...+++..+.. ..+...|..+..+|...|++++|+..|++..+ +.| +...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~ 158 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---------LNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HSTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------HCCCcHHH
Confidence 355666666666777777777776666542 22345666666666666777777777766662 223 2344
Q ss_pred HHHHHHHHHccCchHHHH-HHHHHH
Q 038801 589 VDAFLYALVKGGFFDAVM-QVVEKS 612 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~-~~~~~m 612 (662)
+..+..++...|+.+++. ..+..|
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554 333433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=65.86 Aligned_cols=109 Identities=12% Similarity=-0.033 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC---CCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhC-----
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK---GIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEM----- 615 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 615 (662)
..+......+.+.|++++|+..|++..+..+..... ...| +...|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 355667777888999999999999999554421100 0011 1238889999999999999999999999886
Q ss_pred --CCC-CCHH----hHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 616 --KVF-VDKW----KYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 616 --~~~-p~~~----~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
++. +..| ......+...|++++|...++++++++|.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 543 3466 6667788888999999999999999999853
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.04 E-value=6.8e-05 Score=62.63 Aligned_cols=89 Identities=13% Similarity=-0.064 Sum_probs=36.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|++++|...|++..... +.+...|..+..+|.+.|++++|...|++...... .+...+..+..+|...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCH
Confidence 333444444444444444444332 22333444444444444444444444444443311 1233333344444444444
Q ss_pred HHHHHHHHHHH
Q 038801 455 QSAFSLFRDMR 465 (662)
Q Consensus 455 ~~A~~~~~~m~ 465 (662)
++|...|++..
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=7.1e-06 Score=73.36 Aligned_cols=125 Identities=10% Similarity=-0.098 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc------------cchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD------------RSVGFGIISACVNLGLSDKAHSILDEMNACG 398 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 398 (662)
..+..+...+...|++++|++.|++...+.+...... ...+..+..++...|++++|...+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455666667777777777777777665433211100 1344445555555566666666665555542
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHH
Q 038801 399 CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 458 (662)
+.+...+..+..+|...|++++|...|++..+. .| +...+..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666666666666655544 22 3344444444444444444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-05 Score=63.42 Aligned_cols=97 Identities=3% Similarity=-0.085 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhH
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKY 624 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~ 624 (662)
+..+...+.+.|++++|+..++++. ...| +...+..+..++.+.|++++|+..+++..+.++. ++.+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al---------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVC---------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4556677888999999999999999 3445 4578888999999999999999999999887765 556666
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 625 KQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 625 ~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+...+...|+.+.|...++++++++|..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 6667777899999999999999999864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.001 Score=63.53 Aligned_cols=198 Identities=9% Similarity=0.007 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR--TAEATQLVMDISSSGLQLDVGNYDALIEASITSQD-FQSAFSL 460 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~ 460 (662)
++++..+++.+.... +-+..+|+.-..++.+.|+ +++++++++.+.+.... |...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 445555555555543 3455555555555555552 55666666666554322 45555555555555555 3555555
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 461 FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 461 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
++++++.. +-+...|+.....+...+... +. ++ ..-...+.++++++.+.+.+..
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~-------------~~-~~--------~~~~~~~~~~eEle~~~~ai~~-- 222 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQP-------------DS-GP--------QGRLPENVLLKELELVQNAFFT-- 222 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC----------------------------CCCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhcc-------------cc-cc--------ccccchHHHHHHHHHHHHHHHh--
Confidence 55555544 222233333332222221100 00 00 0000014467888888888874
Q ss_pred CC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHH---HHHHHccCchHH
Q 038801 541 EP-NDQTYLSLINGYVTA-----------EQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAF---LYALVKGGFFDA 604 (662)
Q Consensus 541 ~p-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l---~~~~~~~g~~~~ 604 (662)
.| |...|+-+-..+.+. +.++++++.++++. .+.||. .++..+ ..+....|..++
T Consensus 223 ~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell---------e~~pd~~w~l~~~~~~~~~~~~~~~~~~ 293 (331)
T 3dss_A 223 DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ---------ELEPENKWCLLTIILLMRALDPLLYEKE 293 (331)
T ss_dssp STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHHCTTTTHHH
T ss_pred CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH---------hhCcccchHHHHHHHHHHhhcccccHHH
Confidence 45 445666554444443 45778888888888 345554 222222 122234667777
Q ss_pred HHHHHHHHHhCCC
Q 038801 605 VMQVVEKSQEMKV 617 (662)
Q Consensus 605 A~~~~~~m~~~~~ 617 (662)
+..+++++.+.++
T Consensus 294 ~~~~l~~l~~~Dp 306 (331)
T 3dss_A 294 TLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCc
Confidence 8888888766544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-05 Score=63.04 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=70.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EH 586 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~ 586 (662)
+...|..+...+...|++++|...|++..+.. ..+...|..+..++...|++++|+..+++..+ +.| +.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---------~~p~~~ 77 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---------LDGQSV 77 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------hCchhH
Confidence 45567777777778888888888888777642 22456777777777778888888888887772 223 34
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
..+..+..++...|++++|...++++.+..
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 667777777788888888888887775543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00015 Score=59.84 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038801 474 GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553 (662)
Q Consensus 474 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 553 (662)
..+..+...+...|++++|...|++.....+ .+...|..+..+|...|++++|...+++..+.. .-+...|..+..+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444445555555555555555555444311 134567778888888888888888888888753 2245678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhh
Q 038801 554 YVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+...|++++|+..|+++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888887433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-05 Score=61.86 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNL 588 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~ 588 (662)
.+..+...+.+.|++++|...|++.++. .| +...|..+..++...|++++|+..|++.. .+.|+ ...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------~l~P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHAR---------MLDPKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHH
Confidence 4556667778888888888888888874 45 45677788888888888888888888887 33443 467
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 589 VDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
+..+..++.+.|++++|...+++..+..+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77778888888888888888888766544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=57.84 Aligned_cols=97 Identities=9% Similarity=-0.118 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL--DVGNYDALIEA 447 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~ 447 (662)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. .. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555556666666666666655543 3345556666666666666666666666666542 11 34556666666
Q ss_pred HHcC-CCHHHHHHHHHHHHHcC
Q 038801 448 SITS-QDFQSAFSLFRDMREAR 468 (662)
Q Consensus 448 ~~~~-g~~~~A~~~~~~m~~~~ 468 (662)
+... |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 6666 66666666666665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0002 Score=58.20 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 411 (662)
.|..+...+.+.|++++|++.|++..++.+. +...+..+..++...|++++|...+++.++.. +.+...|..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4444445555555555555555555442221 22334444445555555555555555554432 233444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 038801 412 AYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~ 431 (662)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.95 E-value=9.3e-05 Score=60.41 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc--
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-- 585 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-- 585 (662)
+..+...+...|++++|...|++..+. .|+. ..+..+..++...|++++|+..++++... .|+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---------~p~~~ 73 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---------YPTHD 73 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------CCCCc
Confidence 345566777888999999999888874 3332 46777888888889999999999988832 232
Q ss_pred --HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 --HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+..++.+.|++++|...++++.+..+.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 456677788888999999999999888776543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00024 Score=56.56 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHH
Confidence 3334444444444444444444444432 22333344444444444444444444444443211 12345566666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 038801 521 KAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~ 538 (662)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666676666666653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=8e-05 Score=76.02 Aligned_cols=105 Identities=10% Similarity=-0.096 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFL-----Q-FEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG 581 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 581 (662)
..+++.|...|...|++++|+.++++.++. | -.|+. .+++.|...|...|++++|+.++++..+.....-..+
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999887751 2 23444 5899999999999999999999999987666432222
Q ss_pred CcccH-HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 582 IKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 582 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.|+. .+.+.+..++...|++++|..++.++.+
T Consensus 431 -Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 -HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 5667777788899999999999999865
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00015 Score=60.79 Aligned_cols=100 Identities=11% Similarity=-0.014 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
+...+..+...+...|++++|.+.|++..+. .|+ ...|..+..+|...|++++|+..+++..+ ..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------~~ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE---------KD 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh---------hC
Confidence 4556777788888888888888888888864 566 46777788888888888888888888872 23
Q ss_pred c-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 584 F-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 584 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
| +...+..+..++...|++++|...+++..+..+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3 3566777778888888888888888888766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=7.1e-05 Score=63.82 Aligned_cols=139 Identities=12% Similarity=-0.023 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-LD----VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
.++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 35556666666666666666666665543111 01 12445555555556666666665555443210
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHH
Q 038801 479 IMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQTYLSLING 553 (662)
Q Consensus 479 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~ 553 (662)
..........++..+...+...|++++|.+.+++..+. +..+. ...+..+...
T Consensus 81 ----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 81 ----------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp ----------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 00011111345677777888888888888888777642 11111 2467777888
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 038801 554 YVTAEQYFSVLMMWHEIKRK 573 (662)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~ 573 (662)
+...|++++|.+.+++..+.
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 88889999999888887743
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=60.08 Aligned_cols=114 Identities=8% Similarity=-0.014 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
.+..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...+++..+... .+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~------------ 71 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-EN------------ 71 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HS------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-cc------------
Confidence 44445555555555555555555555432 11344444555555555555555555555443320 00
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 552 (662)
.+..+. ..+|..+..+|...|++++|.+.|++..+. .|+......+..
T Consensus 72 ------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 72 ------------------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 000000 445677777788888888888888887764 456554444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00014 Score=60.99 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc----HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE----HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+...+..+...+...|++++|+..|++.. ...|+ ...+..+..++.+.|++++|...+++..+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---------GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 56788899999999999999999999999 34455 577888889999999999999999998776553
Q ss_pred -CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 619 -VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 619 -p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+..+..+...+...|+.+.|...++++++++|.+
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4456565666777899999999999999998753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.2e-05 Score=63.09 Aligned_cols=60 Identities=5% Similarity=-0.057 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
.+..+..+|.+.|++++|...|++..+.... +...+..+..++...|++++|+..|++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444444444333111 23333333344444444444444444333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.80 E-value=4.3e-05 Score=78.57 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~ 560 (662)
.+.+.|++++|.+.+++..+..+ .+...|..+..+|.+.|++++|.+.+++..+. .| +...|..+..+|...|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 34455566666666665554311 12445555555666666666666666665553 23 334555555556666666
Q ss_pred HHHHHHHHHHH
Q 038801 561 FSVLMMWHEIK 571 (662)
Q Consensus 561 ~~a~~~~~~m~ 571 (662)
++|++.++++.
T Consensus 91 ~eA~~~~~~al 101 (477)
T 1wao_1 91 RAALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.8e-05 Score=63.60 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHc
Q 038801 522 AGRLEDAKRTLRRMIFLQF-EPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVK 598 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 598 (662)
.|++++|+..|++.++.+. .|+ ...+..+..+|...|++++|+..|+++.+ ..|+ ...+..+..++.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK---------QFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCchHHHHHHHHHHHH
Confidence 3455555555555554210 122 13444555555555555555555555551 1221 2444445555555
Q ss_pred cCchHHHHHHHHHHHhC
Q 038801 599 GGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~ 615 (662)
.|++++|.+.+++..+.
T Consensus 74 ~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.5e-05 Score=75.33 Aligned_cols=131 Identities=12% Similarity=-0.005 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND------------------QTYLSLINGYVTAEQYFSVLMMWHEIKRK 573 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 573 (662)
+..+...+.+.|++++|...|++.+.. .|+. ..|..+..+|.+.|++++|+..+++..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT- 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 444455555566666666666655542 3433 2788899999999999999999999992
Q ss_pred hcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHH-HHhhhhhhhHHHHHHHHhhHH
Q 038801 574 ISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFM-ENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 574 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~-~~~~~~~~a~~~~~~~~~l~p 650 (662)
+.| +...|..+..++...|++++|...|+++.+..+. +..+..+.... ...+..+.++..++++++..|
T Consensus 259 --------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 259 --------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp --------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred --------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 344 4578899999999999999999999999776654 33444333332 334667788889999999988
Q ss_pred HHH
Q 038801 651 LIA 653 (662)
Q Consensus 651 ~~~ 653 (662)
.+.
T Consensus 331 ~~~ 333 (338)
T 2if4_A 331 EGG 333 (338)
T ss_dssp ---
T ss_pred CCC
Confidence 764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00043 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 442 DALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
..+..++...|++++|...|++..+
T Consensus 43 ~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 43 YWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333444444444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00038 Score=71.17 Aligned_cols=120 Identities=11% Similarity=-0.007 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----------------DQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 573 (662)
..|..+...|.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 45667777778888888888888887763 333 47888999999999999999999999993
Q ss_pred hcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHH
Q 038801 574 ISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 574 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
+.| +...|..+..++.+.|++++|+..|+++.+..+. +..+..+.......++.+.+.+
T Consensus 346 --------~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 346 --------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 4578888999999999999999999999887765 5566666666666777766553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=61.37 Aligned_cols=100 Identities=7% Similarity=-0.057 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFL--------QF--------EPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
..+......+.+.|++++|...|.+.+.. .. .|. ...|..+..+|.+.|++++|+..++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al- 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL- 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 35666777788888888888888887763 00 222 3578888999999999999999999999
Q ss_pred hhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 573 KISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 573 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+.|+ ...|..+..++...|++++|...+++..+..+.
T Consensus 91 --------~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 --------KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp --------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred --------hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 23454 578888999999999999999999999887655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=62.75 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCC---------cc-cHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGI---------KF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
...+......+.+.|++++|+..|++....++.....+- .| +..+|..+..++.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356778888999999999999999999854321100000 22 23678888999999999999999999998
Q ss_pred hCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 614 EMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 614 ~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+.++. +..+..+...+...|+++.|...++++++++|.+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 87655 44666666677778999999999999999999854
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00038 Score=58.07 Aligned_cols=101 Identities=16% Similarity=0.033 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--------D-----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTD 577 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 577 (662)
.+......+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..+++..+.+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~- 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR- 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-
Confidence 4556667777889999999999888874 444 2 38999999999999999999999999942111
Q ss_pred CCCCCcccH-HHH----HHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 578 GQKGIKFEH-NLV----DAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 578 ~~~~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
.-.+.|+. ..| .....++...|++++|+..|++..+.
T Consensus 90 -~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 -RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp -HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 01226765 677 88899999999999999999998654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00029 Score=69.56 Aligned_cols=119 Identities=13% Similarity=0.034 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFL--------------QFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
|..+...+.+.|++++|.+.|++.++. ...| +...|..+..+|.+.|++++|++.++++.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al----- 300 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL----- 300 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-----
Confidence 445555556666666666666655540 0123 23577777788888888888888888888
Q ss_pred cCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhH
Q 038801 577 DGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAK 639 (662)
Q Consensus 577 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~ 639 (662)
.+.| +...+..+..++.+.|++++|.+.++++.+..+. +..+..+.......++.+.+.
T Consensus 301 ----~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 301 ----EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp ----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2344 3467777778888888888888888888766554 333333333344445544443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0006 Score=69.65 Aligned_cols=143 Identities=6% Similarity=-0.035 Sum_probs=97.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
....|..+...|.+.|++++|...|++.++..- .+. .+ ..+...+ .+.. ....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-~~~-~~-----------~~~~~~~-~~~~--------~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEY-GL-----------SEKESKA-SESF--------LLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCC-SC-----------CHHHHHH-HHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccc-cC-----------ChHHHHH-HHHH--------HHHHHHHHH
Confidence 355677788888888888888888888876531 111 00 0000000 0000 134678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLY 594 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~ 594 (662)
.+|.+.|++++|+..+++.++. .| +...|..+..+|...|++++|+..|+++. .+.|+. ..+..+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---------~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---------EVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------TTC----CHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---------HhCCCCHHHHHHHHH
Confidence 8888999999999999988875 34 55788888888999999999999999888 345543 67777777
Q ss_pred HHHccCchHHHHH-HHHHH
Q 038801 595 ALVKGGFFDAVMQ-VVEKS 612 (662)
Q Consensus 595 ~~~~~g~~~~A~~-~~~~m 612 (662)
++.+.|+.++|.+ .+++|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888887764 34444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00071 Score=69.01 Aligned_cols=129 Identities=5% Similarity=-0.106 Sum_probs=94.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFL---QF---EPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLV 589 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---~~---~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~ 589 (662)
.+...|++++|+.++++.++. -+ .|+. .+++.|..+|...|++++|+.++++..+..+..-.. -.|+. .++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 456789999999999887762 12 2333 589999999999999999999999988665542111 23444 788
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHh-----CCCC-CCHHhH--HHHHH-HHhhhhhhhHHHHHHHHh
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQE-----MKVF-VDKWKY--KQAFM-ENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~~~~--~~~~~-~~~~~~~~a~~~~~~~~~ 647 (662)
+.|...|...|++++|..++++..+ .|.. |++... ++..+ ...+.++.|+.+++++++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 4655 443322 24444 346788888888887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00014 Score=74.75 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=47.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
.+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+... -+...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3445556666666666555542 33455555555555555666666555555555421 134455555555555555555
Q ss_pred HHHHHHHHHHc
Q 038801 457 AFSLFRDMREA 467 (662)
Q Consensus 457 A~~~~~~m~~~ 467 (662)
|.+.|++..+.
T Consensus 93 A~~~~~~al~~ 103 (477)
T 1wao_1 93 ALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=9.8e-05 Score=58.31 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=64.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
+...|..+...+...|++++|.+.|++..+. .| +...|..+..++...|++++|++.+++.. .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---------RYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------TSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------HhCCCc
Confidence 3456777777888888888888888888775 34 55677788888888888888888888888 33343
Q ss_pred ------HHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 586 ------HNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 586 ------~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
...+..+..++...|+.++|.+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 34455555566666666665554433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00091 Score=65.99 Aligned_cols=115 Identities=8% Similarity=0.002 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 038801 330 KETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPT 409 (662)
Q Consensus 330 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 409 (662)
...|..+...+.+.|++++|++.|++..++.+. .......+++ ... .+.+..+|..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~---------------~~~~~~~~~~-------~~~-~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG---------------SRAAAEDADG-------AKL-QPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HHHHSCHHHH-------GGG-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc---------------CccccChHHH-------HHH-HHHHHHHHHHH
Confidence 345666777777777777777777776541100 0000000000 000 01234566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
..+|.+.|++++|...+++..+... .+...|..+..+|...|++++|+..|++..+..
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 6667777777777777777666421 145566666666777777777777776666553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00035 Score=68.14 Aligned_cols=61 Identities=5% Similarity=-0.094 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
.|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666666666665543 33444555555555555555555555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0033 Score=65.75 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC-
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR----------PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG- 523 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 523 (662)
++|++.++++.+.+ |.+...|+.--..+...|+ ++++.+.++++.+..+ -+..+|+.-...+.+.|
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccc
Confidence 45555555555543 3333344444444444444 6677777777766422 24456777777777888
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHcc-
Q 038801 524 -RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE-QYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKG- 599 (662)
Q Consensus 524 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~- 599 (662)
+++++++.++++.+.. .-|...|+.-..++.+.| .++++++.++++. + ..| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-------~--~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-------T--RNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-------T--TTCCCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHH-------H--HCCCCccHHHHHHHHHHhhc
Confidence 6799999999998864 236678888777777778 8888998888888 3 334 446666666665552
Q ss_pred -------------CchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhh
Q 038801 600 -------------GFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLK 636 (662)
Q Consensus 600 -------------g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~ 636 (662)
+.+++++++++++...++. +..|.|....+...+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 6689999999998877765 668888877776655533
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.012 Score=61.41 Aligned_cols=170 Identities=7% Similarity=-0.062 Sum_probs=107.5
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCcccccchHHHHHH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGN----------VKGLANLIIEAQKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~ 376 (662)
.++|++.+.+++...+. +...|+.--.++...|+ ++++++.++++.+..++ +..+|+.-..
T Consensus 45 ~eeal~~~~~~l~~nP~-----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK----~y~aW~hR~w 115 (567)
T 1dce_A 45 DESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----SYGTWHHRCW 115 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHH
Confidence 34556666666655322 44556555555555554 67777777777654333 3344555555
Q ss_pred HHHhcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC--
Q 038801 377 ACVNLG--LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH-RTAEATQLVMDISSSGLQLDVGNYDALIEASITS-- 451 (662)
Q Consensus 377 ~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-- 451 (662)
.+.+.+ +++++.+.++++.+.. +-|-..|+.-..++.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcc
Confidence 556666 5577777777777765 456667777777777777 777788887777766432 666777666665542
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 452 ------------QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 452 ------------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
+.++++++.+++..... |.+...|..+-..+.+.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45677888888777765 5566667766666666555
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0048 Score=48.79 Aligned_cols=76 Identities=16% Similarity=-0.001 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHH
Q 038801 528 AKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAV 605 (662)
Q Consensus 528 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 605 (662)
|.+.|++..+. .| +...+..+...|...|++++|+..|++..+ ..| +...+..+..++.+.|++++|
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD---------FDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------HCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 44555555543 23 334555555666666666666666666551 122 234555555566666666666
Q ss_pred HHHHHHHHh
Q 038801 606 MQVVEKSQE 614 (662)
Q Consensus 606 ~~~~~~m~~ 614 (662)
...+++..+
T Consensus 73 ~~~~~~al~ 81 (115)
T 2kat_A 73 RQAWESGLA 81 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.014 Score=48.05 Aligned_cols=110 Identities=10% Similarity=-0.063 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTA 420 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 420 (662)
+.++|+++|++..+ .+ .++ .. +...|...+.+++|.+.|++..+.| +...+..|...|.. .++++
T Consensus 10 d~~~A~~~~~~aa~---~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACE---LN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHH---TT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHc---CC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 45556666655544 22 111 11 3344444455555666666665553 34455555555555 55666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASIT----SQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 468 (662)
+|.++|++..+.| +...+..|...|.. .++.++|...|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666665543 34445555555555 555666666666555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0023 Score=50.72 Aligned_cols=78 Identities=13% Similarity=-0.023 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+...|++..+.. +.+...+..+..+|...|++++|...|++..+... .+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554433 33445555555555555555555555555554421 1344455555555555555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=54.86 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhhcccCCCCCcccH-H
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQY----------FSVLMMWHEIKRKISTDGQKGIKFEH-N 587 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~p~~-~ 587 (662)
.+.+.+++|.+.+++..+. .| +...|..+..++...+++ ++|+..|++.. .+.|+. .
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---------~ldP~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---------LIDPKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---------HHCTTCHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---------HhCcCcHH
Confidence 4566788888888888875 45 556787787787777654 59999999998 566654 7
Q ss_pred HHHHHHHHHHccC-----------chHHHHHHHHHHHhCCCC
Q 038801 588 LVDAFLYALVKGG-----------FFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 588 ~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~~ 618 (662)
.|..+..+|.+.| ++++|++.|++..+.++.
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 8899999998874 899999999999887665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0023 Score=50.11 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+...+..+...+...|++++|++.|++..+ +.| +...+..+..++.+.|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT---------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 456788889999999999999999999993 234 4578888999999999999999999999887665
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.011 Score=48.56 Aligned_cols=84 Identities=8% Similarity=-0.004 Sum_probs=46.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
..|...+..+.|.++|++..+. + +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 3333334444455555544443 1 23345555555555 566666777666666643 44555556666665
Q ss_pred ----cCCHHHHHHHHHHHH
Q 038801 557 ----AEQYFSVLMMWHEIK 571 (662)
Q Consensus 557 ----~~~~~~a~~~~~~m~ 571 (662)
.+++++|++.|++..
T Consensus 106 G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 566777777776666
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0028 Score=63.53 Aligned_cols=92 Identities=8% Similarity=-0.091 Sum_probs=72.5
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC-CcccH-HHHHH
Q 038801 521 KAGRLEDAKRTLRRMIFL---QFEP---ND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG-IKFEH-NLVDA 591 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~---~~~p---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~p~~-~~~~~ 591 (662)
..|++++|+.++++.++. -+.| +. .+++.|..+|...|++++|+.+++++.+..+.. .| -.|+. .+++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH--YPVYSLNVASMWLK 387 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SCSSCHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--cCCCChHHHHHHHH
Confidence 357889999998887752 2233 33 589999999999999999999999998665542 22 24554 78999
Q ss_pred HHHHHHccCchHHHHHHHHHHHh
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
|...|...|++++|..++++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999998743
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0055 Score=45.71 Aligned_cols=62 Identities=18% Similarity=0.374 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...+..+...+...|++++|...|++..+.. ..+...+..+..++...|++++|+..+++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777778888888888888888887642 2245677788888888888888888888887
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0025 Score=49.04 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+...+..+..+|.+.|++++|...|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555556666666666666655554211 344555555555556666666555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.012 Score=56.56 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=60.3
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.. .+.|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---------rL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---------NLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------hcCCC
Confidence 3456678887777777899999999999999864 888888888888888999999999999888 45677
Q ss_pred HHHHH
Q 038801 586 HNLVD 590 (662)
Q Consensus 586 ~~~~~ 590 (662)
..+|.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 76654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0073 Score=45.01 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.+..+...+...|++++|...|++..+.. ..+...+..+..++.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444444555555555554444431 113334444444455555555555555544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.005 Score=61.74 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=75.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC---H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-H
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQ---FEPN---D-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-N 587 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~ 587 (662)
+..+.+.|++++|+.++++.++.. +.|+ . .+++.|..+|...|++++|+.+++++.+..+..-. ...|+. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHH
Confidence 344567789999999999888631 2333 2 58999999999999999999999998866554211 224444 7
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+++.|...|...|++++|..+++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88999999999999999999999875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0021 Score=53.48 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038801 489 PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA-----------GRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 553 (662)
+++|+..|++..+-.+- +...|..+..+|... |++++|.+.|++.++ +.|+...|...+..
T Consensus 62 ~~eAi~~le~AL~ldP~--~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK--KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45666666666653111 244677777777665 489999999999987 47877666544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.012 Score=58.95 Aligned_cols=68 Identities=10% Similarity=-0.031 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFL------QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
..+++.+...|...|++++|+.++++.++. .-.|+. .+++.|...|...|++++|+.+++++.+.+..
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999887751 123444 58899999999999999999999998866553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0048 Score=47.39 Aligned_cols=68 Identities=10% Similarity=-0.096 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 585 EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 585 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+...+..+..++.+.|++++|++.++++.+.++. ++.|..+...+...|+.+.|...+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4577888999999999999999999999887765 5677777777788899999999999999998754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0091 Score=59.75 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFL-----Q-FEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
..+++.|..+|...|++++|+.++++.++. | -.|+. .+|+.|...|...|++++|+.++++..+...
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999888751 2 23555 5899999999999999999999999886544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0067 Score=46.28 Aligned_cols=86 Identities=9% Similarity=-0.086 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HH-HHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HN-LVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQA 627 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 627 (662)
....+...|++++|+..++++.+ ..|+ .. .+..+..++.+.|++++|.+.+++..+.++.......
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--- 73 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ---------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--- 73 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH---
Confidence 45567788999999999999982 3443 46 7888999999999999999999999887665322111
Q ss_pred HHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 628 FMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 628 ~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
.+.+..+...+++...++|.
T Consensus 74 ----~~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 74 ----RKMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp ----HHHHHHHHHHHCCTTHHHHC
T ss_pred ----HHHHHHHHHHHHHHhccCcc
Confidence 15666677777777777664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.33 Score=38.31 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=93.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+.-.|..++..++..+..... +..-||.++.-....-+-+-..+.++.+-+-+.+.+ +|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 344577777777777776542 234567777777777777777777777765443332 334433
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHH
Q 038801 528 AKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
...-+-.+ ..+...++..++....+|+-++-.+++.++. . ..+|++...-.+..||.+-|+..+|.+
T Consensus 80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l-------~-n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREIL-------K-NNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHh-------c-cCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 33333222 2234556666777788888888888888764 1 556777788888888888888888888
Q ss_pred HHHHHHhCCCC
Q 038801 608 VVEKSQEMKVF 618 (662)
Q Consensus 608 ~~~~m~~~~~~ 618 (662)
++.++.+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 88888888864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.22 Score=54.90 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=99.1
Q ss_pred CChhHHHH-HHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 038801 235 QSVSDAEK-VIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRT 313 (662)
Q Consensus 235 ~~~~~a~~-~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (662)
+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. +. .-.......|++++|.++
T Consensus 613 ~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 613 GEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp TCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHH
Confidence 88999877 552211 011236677788888999988876531 11 113445678999999887
Q ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHH
Q 038801 314 ILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDE 393 (662)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 393 (662)
. +.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.
T Consensus 675 ~-~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 675 L-TDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp H-TTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-Hhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 3 111 2678999999999999999999999998753 45566666667777776666655
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038801 394 MNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDI 429 (662)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 429 (662)
....| -++....+|.+.|++++|.+++.++
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55554 2344444566666666666665544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.063 Score=51.51 Aligned_cols=143 Identities=10% Similarity=-0.017 Sum_probs=86.7
Q ss_pred chhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cC--CHHHHHHHHHHHHHhhcc
Q 038801 508 KTHDWNSIIHAFC--KAG---RLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVT---AE--QYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 508 ~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~~--~~~~a~~~~~~m~~~~~~ 576 (662)
+...|...+.+.. ..+ +..+|..+|++.++. .|+. ..|..+..+|.. .+ ....... +.+..+....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~-l~~a~~a~~a 269 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAA-LNTEIDNIVT 269 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHH-HHHHHHHHHh
Confidence 4455666665543 222 357788888888874 6764 344444333331 01 1111111 1111111110
Q ss_pred cCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 577 DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWK--YKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 577 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
......+..+|..+...+...|++++|...++++.+.+ |+... .+.......|+.+.|...+++++.++|...-
T Consensus 270 --~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 270 --LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp --CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred --cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 11224466888888777778899999999999999887 44333 2233445679999999999999999998764
Q ss_pred Hhh
Q 038801 655 KNW 657 (662)
Q Consensus 655 ~~~ 657 (662)
-.|
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.2 Score=55.33 Aligned_cols=101 Identities=9% Similarity=0.049 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 334 CEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 334 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
..++..+.+.|..++|+++.++-. .-.......|++++|.++.+.+ .+...|..+...+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~---------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~a 691 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD---------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDAS 691 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH---------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc---------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHH
Confidence 555666666666666665542211 1122334557777776664322 3456677777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
.+.|+++.|++.|.++.+ |..+...|...|+.+...++-+..
T Consensus 692 l~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 692 LQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777766542 333444444455555544443333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.67 Score=39.05 Aligned_cols=129 Identities=7% Similarity=0.020 Sum_probs=80.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
...+.|+++.|.++.+++. +...|..|.+.....|+++-|.+.|.+.. -+..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHH
Confidence 3456677777777766551 56777777777777777777777777653 35556666666677666
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
..++-+....+ | -++....++...|+++++.++|.+.-. .|....+ ....|..+.|.++.+++-
T Consensus 79 L~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~~------A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYAV------AKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHHH------HHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHHH------HHHcCcHHHHHHHHHHhC
Confidence 55554444332 1 256666667777888888888765542 3322111 112466677777776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.021 Score=46.88 Aligned_cols=85 Identities=13% Similarity=0.011 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccC---chHHHHHHHHHHHhCC-C--CCCHHhHHHHHHHHhh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGG---FFDAVMQVVEKSQEMK-V--FVDKWKYKQAFMENHK 633 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~-~--~p~~~~~~~~~~~~~~ 633 (662)
...+.+-|++.. ..+. ++..+...+.+++++++ ++++++.++++..+.+ + ..|.+.++...+...|
T Consensus 14 l~~~~~~y~~e~-------~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 14 LLKFEKKFQSEK-------AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHH-------HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH-------ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence 344555555555 3343 67788888899999998 7779999999998876 3 2567777777778899
Q ss_pred hhhhhHHHHHHHHhhHHHH
Q 038801 634 KLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 634 ~~~~a~~~~~~~~~l~p~~ 652 (662)
+++.|++..+++++++|.+
T Consensus 86 ~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999954
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.15 Score=39.09 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+..-.-.|...+...|+++.|...++++.+..+.... .-.+...++..|..++.+.|++++|..+++++.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4455567888889999999999999999865543211 12345578899999999999999999999999876655
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.12 Score=42.34 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCCCCCcc--cHHHHHHHHHHHHc
Q 038801 524 RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE---QYFSVLMMWHEIKRKISTDGQKGIKF--EHNLVDAFLYALVK 598 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~l~~~~~~ 598 (662)
....+.+-|.+..+.| .++..+.-.+..++++.+ +.++++.++++.. +.+ .| ....+-.|.-++.+
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-------~~~-~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-------PKG-SKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-------HHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcC-CccchHHHHHHHHHHHHH
Confidence 3456667777666655 367777777788888877 6668999999888 332 24 23555666777889
Q ss_pred cCchHHHHHHHHHHHhCCCC
Q 038801 599 GGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~ 618 (662)
.|++++|.++++.+.+..|.
T Consensus 84 l~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp TSCHHHHHHHHHHHHHHCTT
T ss_pred ccCHHHHHHHHHHHHhcCCC
Confidence 99999999999998776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.48 Score=39.93 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=85.7
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~ 378 (662)
+.....|+++.|.++..+. . +...|..|.......|+++-|.+.|.+... +..+.-.|
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~--------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly 70 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--N--------DSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLY 70 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--C--------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHH
Confidence 4456778888888874333 1 677899999999999999999888887542 45566667
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
...|+.+...++-+.....| -++.....+.-.|+++++.++|.+..+ -|.. ....-..|-.+.|.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAAS 135 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHH
Confidence 77788877776666666555 355566667778888888888855432 1111 11112245667777
Q ss_pred HHHHHH
Q 038801 459 SLFRDM 464 (662)
Q Consensus 459 ~~~~~m 464 (662)
++.+++
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.69 Score=36.55 Aligned_cols=137 Identities=16% Similarity=0.077 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (662)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|... .|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~----------C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDK----------CQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGG----------CSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHh----------hhcHHHHHHH
Confidence 46666666666666553 24455555555444444444444444444321 22211 1222222222
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 461 FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 461 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
+-.+- -+...+..-++.+...|+-+.-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 22211 1112333444445555555555555555433 2233334444555555555555555555555555553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.064 Score=40.19 Aligned_cols=72 Identities=3% Similarity=-0.139 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 542 PNDQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 542 p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|...+..+..++...++ .++|..++++.. ...|+. .....+...+.+.|++++|+..|+++.+.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL---------~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL---------QLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---------HHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777777765544 689999999998 455654 6777778889999999999999999988877
Q ss_pred CCCHHh
Q 038801 618 FVDKWK 623 (662)
Q Consensus 618 ~p~~~~ 623 (662)
. +.+.
T Consensus 75 ~-~~~~ 79 (93)
T 3bee_A 75 P-NLDR 79 (93)
T ss_dssp T-TCCH
T ss_pred C-CccH
Confidence 6 4443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.11 Score=39.12 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC-Chh-hHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQL-DVG-NYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
....+.+.|++++|...|++..+. .| +.. .|..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344566667777777777766655 23 344 56666666666677777777776666653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.18 Score=37.69 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 508 KTHDWNSIIHAFCKAGR---LEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+...+..+..++...++ .++|..++++.++. .|+ ......+...+...|++++|+..|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777777765555 68999999999885 564 4678888888899999999999999998
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.18 Score=46.34 Aligned_cols=105 Identities=8% Similarity=0.019 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhCCCCccchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc-CCHHH
Q 038801 491 LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA-----GRLEDAKRTLRRMIFLQFEPN--DQTYLSLINGYVTA-EQYFS 562 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~-~~~~~ 562 (662)
.|...+++..+-.+-..+...|..+...|.+. |+.++|.+.|++.++. .|+ ..++......++.. |+.++
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444443212222345677777777774 8888888888888874 563 56777777777774 88888
Q ss_pred HHHHHHHHHHhhcccCCCCCc--ccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 563 VLMMWHEIKRKISTDGQKGIK--FEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
+.+.+++.. ..... |+....+. ++-++|..+++++
T Consensus 259 a~~~L~kAL-------~a~p~~~P~~~lan~--------~~q~eA~~LL~~~ 295 (301)
T 3u64_A 259 FDEALDRAL-------AIDPESVPHNKLLVI--------LSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHH-------HCCGGGCSSCHHHHH--------HHHHHHHHHHHTH
T ss_pred HHHHHHHHH-------cCCCCCCCChhHHHH--------HHHHHHHHHHHHh
Confidence 888888888 44444 55443333 3445555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.2 Score=38.41 Aligned_cols=63 Identities=5% Similarity=-0.090 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ------FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
..-+-.|...+.+.|+++.|...|+...+.- -.+....+..|..++.+.|++++|+.+++++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445677788888888888888888877631 12344678888899999999999999999888
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.38 Score=44.21 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhhcccCCCCCccc--HHHHHHHHH
Q 038801 525 LEDAKRTLRRMIFLQFEPN---DQTYLSLINGYVTA-----EQYFSVLMMWHEIKRKISTDGQKGIKFE--HNLVDAFLY 594 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~l~~ 594 (662)
...|..++++.++ +.|+ -..|..|...|... |+.++|.+.|++.. .+.|+ ..++..+..
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---------~LnP~~~id~~v~YA~ 247 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---------RYCSAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---------HHCCTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---------HhCCCCCchHHHHHHH
Confidence 5678888888887 4777 35899999999984 99999999999999 45553 456666777
Q ss_pred HHHc-cCchHHHHHHHHHHHhCCCC--CC
Q 038801 595 ALVK-GGFFDAVMQVVEKSQEMKVF--VD 620 (662)
Q Consensus 595 ~~~~-~g~~~~A~~~~~~m~~~~~~--p~ 620 (662)
.+++ .|+.++|.+.+++....++. |+
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 7877 59999999999999998888 55
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.84 Score=35.92 Aligned_cols=90 Identities=9% Similarity=0.015 Sum_probs=63.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhhcccCCCCCcc--cHHHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS---VLMMWHEIKRKISTDGQKGIKF--EHNLVDAFLY 594 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~l~~ 594 (662)
........+.+-|.+....| .|+..+--.+..++.+..+..+ ++.++++.. ..+ .| .....-.|.-
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~-~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKG-SKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTS-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcC-CcchHHHHHHHHHH
Confidence 33445566667776666655 3677666677778888776665 889998888 433 24 2345556667
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
++.+.|++++|.++++.+.+..|.
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCC
Confidence 888999999999999999876654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.24 Score=40.04 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 510 HDWNSIIHAFCKAGRL------EDAKRTLRRMIFLQFEPNDQ----TYLSLIN---GYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
.+|-..+...-+.|+. ++..++|++.... +.|+.. .|--|.- .+...++.++|.++|+.++..
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---
Confidence 3455555555555666 6677777777763 455421 1211111 112248899999999999842
Q ss_pred cCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCH
Q 038801 577 DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 577 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 621 (662)
.-.. ..+|......-.+.|+++.|.+++.+....++.|..
T Consensus 90 ----hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 ----CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp ----CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred ----hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 2222 667777777778999999999999999988887753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.19 E-value=0.00064 Score=66.39 Aligned_cols=238 Identities=12% Similarity=0.055 Sum_probs=126.0
Q ss_pred hhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHH
Q 038801 67 NITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVH 146 (662)
Q Consensus 67 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (662)
|+..|..++.+..+.|.+++.+..+.-.++.. -++..=+.|+-+|++.++..++++.+ ..|+..-..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl-----------~~~N~A~iq 148 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-----------NGPNNAHIQ 148 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT-----------SCCSSSCTH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH-----------cCCCcccHH
Confidence 44445555555555555555555444443321 12223344555555555544443333 112222333
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+..-|...|.++.|.-+|..+.... .|...+.+.|++..|.+.-. .-.++.||-.+
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~a----------kLAstLV~L~~yq~AVdaAr-------------KAns~ktWKeV 205 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFG----------RLASTLVHLGEYQAAVDGAR-------------KANSTRTWKEV 205 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCT----------TTSSSSSSCSGGGSSTTTTT-------------TCCSSCSHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHH----------HHHHHHHHHHHHHHHHHHHH-------------hcCChhHHHHH
Confidence 44555555555555554444432211 11122224455444443222 23466789888
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN 306 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (662)
-.+|... +.+..|.-+--.+.- .||. ...++.-|-..|.+++-..+++.-.... ......++-|.-.|+|- +
T Consensus 206 ~~ACvd~-~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 206 CFACVDG-KEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp THHHHHS-CTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-C
T ss_pred HHHHhCc-hHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-C
Confidence 8999997 888888766555542 3332 3346677888899998888888766432 35678888888888886 4
Q ss_pred hhhHHHHHHHHHcCCCCCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 038801 307 LESASRTILLCLGGGNMEQSDF------SKETYCEVVKGFLQNGNVKGLAN 351 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~a~~ 351 (662)
.++..+-+ ++.-.+. +++. ....|..++-.|++-.++|.|..
T Consensus 278 PeKlmEHl-klf~sri--NipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 278 PQKMREHL-ELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHHH-TTSSSSS--CCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHH-HHHHHhc--cHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44444432 2222211 1110 23346666666776666666553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.02 E-value=4 Score=40.86 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCC--ccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSS--GLQLD---VGNYDALIEASITSQDFQSAFSLFRDMREA----RIYDL--KGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~ 475 (662)
..|...|...|++.+|.+++.++... |.... +..|...++.|...+++.+|..+++++... ..+|+ ..-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666655422 11110 234445555566666666666666655321 11111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
|...+..+...+++.+|...|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33334444555666666555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=11 Score=39.49 Aligned_cols=117 Identities=3% Similarity=-0.033 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHhhCCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038801 488 RPELMAAFLDEVVEDPRVEVKT--HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 565 (662)
+.+.|...+..........+.. ..+..+...+...+...++...+...... .++.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6789999998887643443322 12333333333445355677777766543 3454444444555557799999999
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.|+.|. ..... ...-.--+.+++.+.|+.++|..+|+.+.+
T Consensus 307 ~~~~l~-------~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLP-------MEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSC-------TTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcc-------ccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998877 32211 233233456678889999999999999864
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.32 Score=38.34 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHH---HHHHHHHHHhCC-C--CCCHHhHHHHHHHH
Q 038801 558 EQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDA---VMQVVEKSQEMK-V--FVDKWKYKQAFMEN 631 (662)
Q Consensus 558 ~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~-~--~p~~~~~~~~~~~~ 631 (662)
.....+.+-+++.. ..|. ++..+--.+.++++++.+... ++.++++....+ + .-+...++..++..
T Consensus 15 ~~l~~~~~~y~~e~-------~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 15 EDLLKFEKKFQSEK-------AAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHH-------HHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 33444555555554 3333 677777778899999888766 999999987765 2 12355555667788
Q ss_pred hhhhhhhHHHHHHHHhhHHHH
Q 038801 632 HKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 632 ~~~~~~a~~~~~~~~~l~p~~ 652 (662)
.|+++.|++..+.+++.+|.+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999954
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.44 E-value=2.6 Score=34.14 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCCcccccch----HHHHH---HHHHhcCChHHHHHHHHHHH
Q 038801 329 SKETYCEVVKGFLQNGNV------KGLANLIIEAQKLEPSGIVVDRSV----GFGII---SACVNLGLSDKAHSILDEMN 395 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~~~~~----~~~ll---~~~~~~~~~~~a~~~~~~m~ 395 (662)
|..+|-..+.-.-+.|+. ++..++|++... .++|+... |.-+- ..+...+++++|.++|+.++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia----~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE----ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH----HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH----cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777888888887777888 777788887664 44443211 11110 01122356666677776665
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 396 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
+..-.- ..+|......-.+.|++++|.+++......+.+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 532111 444444444455666666666666666665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.37 E-value=15 Score=40.14 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=87.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH---HHHHHHHhc
Q 038801 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN---SIIHAFCKA 522 (662)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~ 522 (662)
..++-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+... ..|... |. ++.-+|+-.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vR-ygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLR-YGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHH-HHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHH-HHHHHHHHHHhcCC
Confidence 33556677777777777666532 222222233334455678888888888887764 223322 33 334466777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCch
Q 038801 523 GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFF 602 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 602 (662)
|+.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+. + ...|....-..+.-+....|..
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~-------~-~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLS-------K-SHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG-------G-CSCHHHHHHHHHHHHHHTSSSC
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHH-------h-cCCHHHHHHHHHHHHHhccCCC
Confidence 88877777888888642 2233333334444445566655666655444 2 2345554444444455555553
Q ss_pred -HHHHHHHHHHHh
Q 038801 603 -DAVMQVVEKSQE 614 (662)
Q Consensus 603 -~~A~~~~~~m~~ 614 (662)
.+|+..+..+..
T Consensus 645 ~~~aid~L~~L~~ 657 (963)
T 4ady_A 645 LQSAIDVLDPLTK 657 (963)
T ss_dssp CHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcc
Confidence 578888888753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.00057 Score=66.77 Aligned_cols=232 Identities=14% Similarity=0.137 Sum_probs=127.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH
Q 038801 292 VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG 371 (662)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 371 (662)
.+|..|..+....|++.+|++-| ++.. |+..|..+|.+..+.|.+++-...+...++ . .-+..+=
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA~-------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk---~--~ke~~ID 119 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKAD-------DPSSYMEVVQAANTSGNWEELVKYLQMARK---K--ARESYVE 119 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCCS-------CCCSSSHHHHHTTTSSCCTTHHHHHHTTST---T--CCSTTTT
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhCC-------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---H--hcccccH
Confidence 34556666666666666665433 3332 555566666666666666666665554432 1 1122233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS 451 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 451 (662)
+.|+-+|++.++..+.++++ -.||..-...+.+-|...|.++.|.-+|..+ .-|..|...+.+.
T Consensus 120 teLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L 183 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 183 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSC
T ss_pred HHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHH
Confidence 44566666666554433322 1344444455555555555555555444322 2233344445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
|++..|.+.-+ -..+..||--+-.+|...+.+..|...--.++-... ....++.-|-+.|.+++-+.+
T Consensus 184 ~~yq~AVdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad------eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 184 GEYQAAVDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD------ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SGGGSSTTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS------CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH------HHHHHHHHHHhCCCHHHHHHH
Confidence 55555543321 134557888888888888887666544433332211 223456667888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038801 532 LRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWH 568 (662)
Q Consensus 532 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 568 (662)
++...... ..-...|+-|.-.|++- ++++.++-++
T Consensus 252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 88877421 34556888887777763 4555555444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.07 E-value=3 Score=47.61 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD----VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
.-|..++..+.+.|.++.+.++-....+....-+ ...|..+..++...|++++|...+-.+......- ..+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~--~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK--SCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH--HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH--HHHHHH
Confidence 4578888888899999888887776654322212 1257888899999999999999888877654432 356666
Q ss_pred HHHHHhcCCHH
Q 038801 480 MTGLMENHRPE 490 (662)
Q Consensus 480 l~~~~~~~~~~ 490 (662)
+..+|..|..+
T Consensus 978 V~~lce~~~~~ 988 (1139)
T 4fhn_B 978 VNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHhCCChh
Confidence 66666666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=2.1 Score=41.99 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE-----ARIYDLKGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 475 (662)
..++..+...|++++|...+..+.... ..+...|..+|.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445666677777777777777776542 22666777777777777777777777776543 477776543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.99 E-value=14 Score=36.93 Aligned_cols=192 Identities=8% Similarity=0.009 Sum_probs=110.7
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HHc
Q 038801 343 NGNVKGLANLIIEAQKLE--PSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY----CKE 416 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~ 416 (662)
.|++++|++.+-.+.+-. .............++..|...|+++...+.+..+.+..-.. ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 478888888887776421 12233344556678889999999998888777665542222 22333444333 223
Q ss_pred CCHHHHHH--HHHHHHhCCCCCC--------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----cccHHHHHH
Q 038801 417 HRTAEATQ--LVMDISSSGLQLD--------VGNYDALIEASITSQDFQSAFSLFRDMREARI-YDL----KGSYLTIMT 481 (662)
Q Consensus 417 g~~~~A~~--~~~~m~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~ 481 (662)
...+.... +.+.+. .+... ......|...|...|++.+|..++.++...-. ..+ ...+...+.
T Consensus 108 ~~~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 111111 11111 11234566778888888888888888764311 111 134555667
Q ss_pred HHHhcCCHHHHHHHHHHHhhC---CCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 482 GLMENHRPELMAAFLDEVVED---PRVEVK--THDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~---~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.|...+++..|..++.++... ....|+ ...|..++..+...+++.+|.+.|.+..+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 778888888888888776421 122222 34566777777778888888777777664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.97 E-value=6.7 Score=44.82 Aligned_cols=130 Identities=9% Similarity=0.056 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
-|..++..+.+.|.++.+.++-+..++..-.-+. ..|..+++++...|++++|...+-.+. +...+ .
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-------d~~~r--~ 971 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-------TTPLK--K 971 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-------HSSSC--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-------CHHHH--H
Confidence 4777888888888888888888777654211121 257788888888999999988887766 33333 3
Q ss_pred HHHHHHHHHHHccCchH------------HHHHHHHHH-Hh---CCCCCCHHhHHHHHHHHhhhhhh-hHHHHHHHHhhH
Q 038801 587 NLVDAFLYALVKGGFFD------------AVMQVVEKS-QE---MKVFVDKWKYKQAFMENHKKLKV-AKLRKRNFKKME 649 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~------------~A~~~~~~m-~~---~~~~p~~~~~~~~~~~~~~~~~~-a~~~~~~~~~l~ 649 (662)
..+..|+..++..|..+ +..+++..- .. ..-.|+-+..+.++...+||+.. |..+++++.++.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 45566666666555543 444444332 11 12235566667777777788765 466668777764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=1.2 Score=43.80 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
+...++..+...|++++|...++.+.... ..+...|..+|.++...|+..+|++.|++..+.+.+ +.|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~--eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD--DLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--HHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HhCCCCCHHHHH
Confidence 35567788889999999999999888752 337789999999999999999999999999876654 569999886544
Q ss_pred H
Q 038801 591 A 591 (662)
Q Consensus 591 ~ 591 (662)
.
T Consensus 250 l 250 (388)
T 2ff4_A 250 L 250 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.61 E-value=27 Score=38.18 Aligned_cols=451 Identities=13% Similarity=-0.005 Sum_probs=219.0
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHhhhCC---------CCCC-----hhhHHHHHHHHhccCCchhH-HHHHHHHHHH
Q 038801 68 ITSLETNLHKSLLTNNTDEAWKSFKSLTANS---------LFPS-----KPVTNSLIAHLSSLQDNHNL-KRAFASVVYV 132 (662)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~---------~~p~-----~~~~~~ll~~~~~~~~~~~~-~~~~~~~~~~ 132 (662)
......++..+.+.+...+|..+.-+..+.. +..+ ..++..++.+....-...++ ...++.+..+
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~I 224 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDF 224 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Confidence 4445677778888898888877754433211 0011 23444455555545555554 4666666666
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHH---------HH
Q 038801 133 IEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVF---------EE 203 (662)
Q Consensus 133 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------~~ 203 (662)
..+.+. | -|..+++.+.+.++.+.+.++|+.+... .+....+.+-..++ +.+.-.-..++. ++
T Consensus 225 y~k~~~-~---dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL~-~~~~Q~fL~~v~~~l~~~e~~~k 296 (963)
T 4ady_A 225 LMNMPN-C---DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDLV-SSASQQLLEILVTELTAQGYDPA 296 (963)
T ss_dssp HHHSSS-C---CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHTTCCHH
T ss_pred HHhCCc-h---hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHh-cccchHHHHHHHHhccccchhHH
Confidence 655432 2 5677888899999999999999998741 12223233222222 222111111111 11
Q ss_pred HHHhhhhhhcCCCCccHHHHHHHHHHHhcc-----------C----CChhHHHHHHHHHHhcCCCCCcc-----------
Q 038801 204 CCRIALDENLDFMKPNIYACNAALEGCCYG-----------L----QSVSDAEKVIETMSVLGVRPNES----------- 257 (662)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~----~~~~~a~~~~~~m~~~g~~p~~~----------- 257 (662)
+..+. .| .+....|+.++...... . .....|..+-+-....|..-|..
T Consensus 297 L~~IL-----sg-~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~ 370 (963)
T 4ady_A 297 LLNIL-----SG-LPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA 370 (963)
T ss_dssp HHHHT-----TS-HHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC
T ss_pred HHHHh-----CC-CChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc
Confidence 11110 00 00111222222211000 0 00112222222222233222220
Q ss_pred ----cHHHHH-HHHHHcCCHHHHHHHHHHHHhcC--CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCC-CCC--C
Q 038801 258 ----SFGFLA-YLYALKGLQEKIVELESLMNEFG--FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNM-EQS--D 327 (662)
Q Consensus 258 ----t~~~li-~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~ 327 (662)
-+.++. -+....|+.+++..+++.....+ -.+....-..+.-+...+|..+++..++.+.+..... .|- .
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~ 450 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDV 450 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHH
T ss_pred chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccccc
Confidence 111111 12334566677766665544321 1122334444445566667666777777777664210 000 0
Q ss_pred CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCcccccchHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 038801 328 FSKETYCEVVKGFLQNGN-VKGLANLIIEAQKLEPSGIVVDRSVGF--GIISACVNLGLSDKAHSILDEMNACGCSVGLG 404 (662)
Q Consensus 328 p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 404 (662)
+....-.++.-+++-.|. -+++.+.+..+.. ..- ....... +|...++-.|+.+....++..+.+.. +..
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~---dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~ 523 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLY---NDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH---TCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh---cCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHH
Confidence 011112222223333333 2345555555443 110 0011111 23333445677777777777766532 333
Q ss_pred hHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 405 VYVPTLKAYC--KEHRTAEATQLVMDISSSGLQLDVGNYD---ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 405 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
+...+.-+++ -.|+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+.....++++.+.... ..+......+
T Consensus 524 vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAVi 600 (963)
T 4ady_A 524 ITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVI 600 (963)
T ss_dssp HHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHH
Confidence 4444444444 5688888888888887641 222 2232 33446777888877777888887653 2233333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHH
Q 038801 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRL-EDAKRTLRRMIFLQFEPNDQTY 547 (662)
Q Consensus 480 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~ 547 (662)
.-++...|+.+.+.++++.+.+. ..|.+..-..+.-+....|.. .+|..++..+.. .+|..+-
T Consensus 601 aLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 601 ALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp HHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 44555567766677777666653 245554444444444555554 578888888875 4555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.64 E-value=1.2 Score=36.88 Aligned_cols=101 Identities=7% Similarity=0.043 Sum_probs=55.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC-------
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFL-QFEPND-------QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK------- 580 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------- 580 (662)
++.+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++.....+...+.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 44445556666665555543321 012221 244555566666666666666666654332211100
Q ss_pred ----------CCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 581 ----------GIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 581 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
....+...---+..++.+.|++++|+.+++.+....
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 122233444457778899999999999998864433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.93 E-value=3.6 Score=43.87 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.+.|...|+++-|+++-++.. ...|+. .+|..|..+|.+.|+++.|+-.++.|.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV---------~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTST---------ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---------HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHH---------hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445667899999999999998 566764 899999999999999999999999985
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.15 E-value=20 Score=33.75 Aligned_cols=138 Identities=14% Similarity=-0.029 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 038801 70 SLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLL 149 (662)
Q Consensus 70 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 149 (662)
.|.++...|.+++++++|++++.. -...+.+.|+...+......++....+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 334444455555555555554322 22334455666666666656666777777778877777777
Q ss_pred HHHHhcCCchhH-HHHHHHHH----hcC-CCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 150 GSMRNANTAAPA-FALVKCMF----KNR-YFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 150 ~~~~~~~~~~~a-~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
..+.....-+.. ..+++.++ +.| ....+......+...|.+.+++.+|+.-|-. +-.++...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-----------g~~~s~~~~ 170 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-----------GTKESPEVL 170 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------SCTTHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-----------cCCchHHHH
Confidence 777655532211 22333333 233 2334455667777888888888887776631 233344555
Q ss_pred HHHHHHHhcc
Q 038801 224 NAALEGCCYG 233 (662)
Q Consensus 224 ~~ll~~~~~~ 233 (662)
..++-.+...
T Consensus 171 a~mL~ew~~~ 180 (336)
T 3lpz_A 171 ARMEYEWYKQ 180 (336)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555545443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.84 E-value=6.4 Score=41.99 Aligned_cols=126 Identities=7% Similarity=-0.039 Sum_probs=78.3
Q ss_pred HHHHHHHHhccCCC-hhHHHHHHHHHHhcCCCCCcccHH--HHHHHHHHcCC-HHHHHHHHHHHHhc------CCCCc-H
Q 038801 223 CNAALEGCCYGLQS-VSDAEKVIETMSVLGVRPNESSFG--FLAYLYALKGL-QEKIVELESLMNEF------GFSSQ-M 291 (662)
Q Consensus 223 ~~~ll~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~-~~~a~~~~~~~~~~------g~~~~-~ 291 (662)
-..++..+... ++ .+.|+.+|+++.... |....+- .+|..+...++ --+|.+++.+..+. ...+. .
T Consensus 251 ~~~Ll~~~~~t-~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 251 MYSLKSFIAIT-PSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHTC-GGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHccc-ccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34555555554 56 588999999998763 4333322 23333333332 22344544444321 11111 1
Q ss_pred ----------HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 292 ----------VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA 356 (662)
Q Consensus 292 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 356 (662)
.....-.+.+...|+++-|+++-.+.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-----eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-----SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345567789999999997777765432 6789999999999999999999999886
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.25 E-value=2.4 Score=33.52 Aligned_cols=72 Identities=10% Similarity=-0.057 Sum_probs=55.6
Q ss_pred CCcccHHHHHHHHHHHHccCch---HHHHHHHHHHHhCCCC--CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 581 GIKFEHNLVDAFLYALVKGGFF---DAVMQVVEKSQEMKVF--VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 581 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~--p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+-.|+..+--.+.++++++.+. .+++.++++..+.++. -+.+.++..++...|+++.|++..+.+++++|.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4456666666778888887764 4688899888776642 3456666777788899999999999999999975
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.53 E-value=28 Score=33.84 Aligned_cols=94 Identities=15% Similarity=0.002 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-----HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH-
Q 038801 261 FLAYLYALKGLQEKIVELESLMNEFGFSSQ-----MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC- 334 (662)
Q Consensus 261 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~- 334 (662)
.+...|...|++.+|.+++..+.+.=-..| ..+|..-+..|...++..++...+........ .+.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~--ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN--AIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc--cCCCCHHHHHH
Confidence 467788888888888888777765311111 34566667778888888888877666544321 1112222221
Q ss_pred -HH--HHHHH-hcCCHHHHHHHHHHH
Q 038801 335 -EV--VKGFL-QNGNVKGLANLIIEA 356 (662)
Q Consensus 335 -~l--i~~~~-~~~~~~~a~~~~~~m 356 (662)
.. ...+. ..+++..|...|-+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 12344 677888887777654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.04 E-value=28 Score=32.54 Aligned_cols=166 Identities=7% Similarity=0.001 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCChhhHHH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS----ILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ 408 (662)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|.+ +.+.+.+.+.+++......
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34455556666777777766644211 2233344433333 3444455566666666666
Q ss_pred HHHHHHHcCCHH-HHHHHHHHH----HhCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 038801 409 TLKAYCKEHRTA-EATQLVMDI----SSSGL--QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481 (662)
Q Consensus 409 li~~~~~~g~~~-~A~~~~~~m----~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 481 (662)
++..+.....-+ .=.++.+++ .+.|- .-|......+...|.+.|++.+|...|-- |-..+...+..++.
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 666554432111 112222222 22221 12566777778888888888888776631 11112234444444
Q ss_pred HHHhc---CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 482 GLMEN---HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 482 ~~~~~---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
-+... |...+ .+...-.+ +-.|.-.|+...|..+|+...
T Consensus 174 ~w~~~~~~~~~~e---------------~dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDST---------------VAEFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHH---------------HHHHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcch---------------HHHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 44333 32222 22222222 233456788888888887665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.97 E-value=6.7 Score=29.16 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
-+..+-++.+....+.|++.+..+.++++-+.+++..|.++|+-++.+. .....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3444555555555566666666666666666666666666666665542 22233454444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.35 E-value=17 Score=29.12 Aligned_cols=68 Identities=7% Similarity=0.005 Sum_probs=45.9
Q ss_pred CCCChHHHHHHHHHHHhcCCc---hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 138 KLLDFQTVHTLLGSMRNANTA---APAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
..++..+-....-++++.... .+++.+++.+.+.+.. ....+.-.|.-++.|.|+++.|++..+.+.+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 356666766677777766644 4677888888875432 2333334455566689999999999988887
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.69 E-value=18 Score=28.64 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 541 EPNDQTYLSLINGYVTAE---QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 541 ~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|+..+--.+..++.+.. +..+++.+++++. +.+-.-....+-.|.-++.+.|++++|.++.+.+.+..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~-------~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-------KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH-------HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 566655555566666654 4556899998888 333111245666677789999999999999999977655
Q ss_pred C
Q 038801 618 F 618 (662)
Q Consensus 618 ~ 618 (662)
.
T Consensus 110 ~ 110 (134)
T 3o48_A 110 N 110 (134)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.31 E-value=36 Score=32.00 Aligned_cols=81 Identities=6% Similarity=-0.009 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
|......+...|.+.+++.+|...|- .|-.+....|..++..+...+. ...++...-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaVL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAVL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHHH
Confidence 55666777788888888888877762 1222222455444444433332 1223333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 038801 517 HAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.|...++...|..+++...+
T Consensus 196 -~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHH
Confidence 45567888888887766554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.93 E-value=20 Score=28.75 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 541 EPNDQTYLSLINGYVTAE---QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 541 ~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|+..+--.+..++.+.. +..+++.++++.. ..+-.-.....-.|.-++.|.|++++|.++.+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~-------~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-------KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-------HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 466655555566666654 4456888888888 322111234555666788899999999999999987765
Q ss_pred C
Q 038801 618 F 618 (662)
Q Consensus 618 ~ 618 (662)
.
T Consensus 109 ~ 109 (144)
T 1y8m_A 109 N 109 (144)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.86 E-value=36 Score=31.72 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=57.2
Q ss_pred HHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCch-hHHHHHHHHH----hcCC-CCCcccHHHHHH
Q 038801 112 HLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAA-PAFALVKCMF----KNRY-FMPFELWGGFLV 185 (662)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~ 185 (662)
.+.+.|+...+......++....+.+..++......++..+..-..-+ .=..+++.++ +.|. ...+...+..+.
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 445556666666666666777778888888887777777776533222 1223333333 3332 334556677788
Q ss_pred HHhhcCCcHHHHHHHHH
Q 038801 186 DICRKNSNFVAFLKVFE 202 (662)
Q Consensus 186 ~~~~~~~~~~~a~~~~~ 202 (662)
..|.+.+++.+|+.-|-
T Consensus 142 ~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHH
Confidence 88888888888877664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 662 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.35 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.14 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.14 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.11 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.98 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.88 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.86 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.84 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.82 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.69 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.58 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.48 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.28 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.05 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.02 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.7 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.28 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.95 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.32 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.28 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.74 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-19 Score=180.14 Aligned_cols=377 Identities=10% Similarity=0.011 Sum_probs=296.1
Q ss_pred HHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChh
Q 038801 229 GCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 308 (662)
.+.+. |++++|++.|+++.+.. +-+...+..+..++.+.|++++|...++.+.+.. +-+..++..+..+|.+.|+++
T Consensus 8 ~~~~~-G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 8 REYQA-GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 45566 99999999999998763 2345677778888999999999999999998875 345778899999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHH
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 388 (662)
+|...+......... +...+..........+....+......... ...................+....+.
T Consensus 85 ~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ----YNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----HCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred ccccccccccccccc-----cccccccccccccccccccccccccccccc----cccccccccccccccccccchhhhhH
Confidence 999998888776422 555666666666666776666666665543 12223334445566667778888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 389 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
..+....... +.+...+..+...+...|++++|...+++..+. .| +...|..+...+...|++++|...+++....
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 156 ACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 8888777654 456678888889999999999999999998876 34 5678888999999999999999999999887
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038801 468 RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY 547 (662)
Q Consensus 468 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 547 (662)
+ +.....+..+...+.+.|++++|...|++..+..+ -+..+|..+...+...|++++|.+.++...... ..+...+
T Consensus 233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 308 (388)
T d1w3ba_ 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSL 308 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchhh
Confidence 6 45556788888999999999999999999887522 235678889999999999999999999988753 4466788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHH
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYK 625 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~ 625 (662)
..+...+...|++++|++.+++.. .+.|+ ..++..+..++.+.|++++|.+.++++.+..+. ++.+..+
T Consensus 309 ~~l~~~~~~~~~~~~A~~~~~~al---------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 379 (388)
T d1w3ba_ 309 NNLANIKREQGNIEEAVRLYRKAL---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT---------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 899999999999999999999988 34554 477888999999999999999999999877654 4455555
Q ss_pred HHHHHHhh
Q 038801 626 QAFMENHK 633 (662)
Q Consensus 626 ~~~~~~~~ 633 (662)
...+...|
T Consensus 380 g~~~~~~~ 387 (388)
T d1w3ba_ 380 GNTLKEMQ 387 (388)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 54444444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.2e-19 Score=178.21 Aligned_cols=381 Identities=12% Similarity=0.015 Sum_probs=304.6
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038801 185 VDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY 264 (662)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 264 (662)
...+.+.|++++|++.|+++.+. .+-+...+..+...+... |++++|+..|++..+.. +-+..++..+..
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 75 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN-PLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455789999999999999873 223566788888888887 99999999999998764 334567888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 038801 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG 344 (662)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 344 (662)
++.+.|++++|...+....+.. +.+..............+....+............ ................+
T Consensus 76 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 149 (388)
T d1w3ba_ 76 VYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-----DLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-----TCTHHHHHHHHHHHTTS
T ss_pred Hhhhhccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-----ccccccccccccccccc
Confidence 9999999999999999998875 34444455555555566666666555444444321 25556666777788888
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (662)
....+...+.+.....+ -+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 150 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 224 (388)
T d1w3ba_ 150 RLEEAKACYLKAIETQP----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp CHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred hhhhhHHHHHHhhccCc----chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHH
Confidence 89888888888765222 234456667888899999999999999988864 4567789999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 038801 425 LVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR 504 (662)
Q Consensus 425 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 504 (662)
.+++....+ ..+...+..+...+.+.|++++|...|++..+.. |.+..++..+...+...|+.++|.+.++.....
T Consensus 225 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 300 (388)
T d1w3ba_ 225 AYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-- 300 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--
T ss_pred HHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--
Confidence 999988764 3366778888999999999999999999998875 556678899999999999999999999998875
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 505 VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
...+...+..+...+...|++++|.+.|++.++. .|+ ..++..+..+|...|++++|++.|+++. .+.
T Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------~l~ 369 (388)
T d1w3ba_ 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---------RIS 369 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH---------TTC
T ss_pred CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhC
Confidence 3345667889999999999999999999999874 565 5688999999999999999999999999 456
Q ss_pred cc-HHHHHHHHHHHHccCc
Q 038801 584 FE-HNLVDAFLYALVKGGF 601 (662)
Q Consensus 584 p~-~~~~~~l~~~~~~~g~ 601 (662)
|+ ...|..+..++.+.||
T Consensus 370 P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 75 4788889998888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.1e-13 Score=131.75 Aligned_cols=270 Identities=9% Similarity=-0.019 Sum_probs=175.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQD 453 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 453 (662)
....+.+.|++++|...|+++++.. +-+...|..+..+|...|++++|...|++..+... -+...|..+..+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 3444556666666666666666653 33455666666666666666666666666665421 144556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCC--------------CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 454 FQSAFSLFRDMREARIYD--------------LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 454 ~~~A~~~~~~m~~~~~~~--------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
+++|.+.+++........ +.......+..+...+...++...+.+..+..+...+..++..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 666666666665432100 000111122334455667788888888776544455667788888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALV 597 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 597 (662)
...|++++|...|++.... .|+ ...|..+...|...|++++|++.|+++.+ +.|+ ...+..+..+|.
T Consensus 183 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE---------LQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHH---------HhhccHHHHHHHHHHHH
Confidence 9999999999999998875 454 57888999999999999999999999882 3444 467888999999
Q ss_pred ccCchHHHHHHHHHHHhCCCC------------CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHhhhCCC
Q 038801 598 KGGFFDAVMQVVEKSQEMKVF------------VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661 (662)
Q Consensus 598 ~~g~~~~A~~~~~~m~~~~~~------------p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~~~~ 661 (662)
+.|++++|++.|++..+..+. -+.|..+.......++.+....... ..-+++.+-.||+
T Consensus 252 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~-----~~l~~l~~~~~~~ 322 (323)
T d1fcha_ 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA-----RDLSTLLTMFGLP 322 (323)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT-----TCHHHHHHHTTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----hCHHHHHHHhCCC
Confidence 999999999999998664222 0134444444444555555544432 2223556666664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3e-12 Score=123.48 Aligned_cols=234 Identities=9% Similarity=-0.001 Sum_probs=186.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 408 PTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
-....+.+.|++++|...|+++.+. .| +...|..+..+|...|++++|...|++..+.. |.+...+..+...+...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 3566788999999999999999987 44 57789999999999999999999999999875 55667888899999999
Q ss_pred CCHHHHHHHHHHHhhCCCCccchh-------------hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 038801 487 HRPELMAAFLDEVVEDPRVEVKTH-------------DWNSIIHAFCKAGRLEDAKRTLRRMIFLQ-FEPNDQTYLSLIN 552 (662)
Q Consensus 487 ~~~~~a~~~~~~~~~~~~~~p~~~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~ 552 (662)
|+.++|.+.+++.....+...... .....+..+...+.+.+|.+.|.+..+.. -..+...+..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999999876422211111 11122234445677888999998887642 2335678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHH
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFME 630 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~ 630 (662)
.+...|++++|+..+++... ..|+ ...|..+..++.+.|++++|.+.++++.+..+. ++.+..+...+.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALS---------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccc---------cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 99999999999999999982 3343 578888999999999999999999999876654 556777777788
Q ss_pred HhhhhhhhHHHHHHHHhhHHHHH
Q 038801 631 NHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 631 ~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
..|+.+.|...++++++++|.+.
T Consensus 252 ~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 252 NLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HCCCHHHHHHHHHHHHHhCCcCh
Confidence 88999999999999999998643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=4.5e-09 Score=102.06 Aligned_cols=276 Identities=12% Similarity=-0.010 Sum_probs=174.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-cc-cccchHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG-IV-VDRSVGFGII 375 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~-~~~~~~~~ll 375 (662)
...+...|++++|++.+.+.+...+..........++.+...+...|++++|++.|++...+.+.. .. .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 344556666666666666666543211000012345556666667777777777776654422111 11 1112333455
Q ss_pred HHHHhcCChHHHHHHHHHHHH----CCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CChhhHHHH
Q 038801 376 SACVNLGLSDKAHSILDEMNA----CGCSV---GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ----LDVGNYDAL 444 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~l 444 (662)
..+...|++..+...+..... .+... ....+..+...+...|+++.+...+......... .....+..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 666777888888777776543 11111 1235556677788888888888888877654222 223445556
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCC--CC----CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--chhhHHHHH
Q 038801 445 IEASITSQDFQSAFSLFRDMREARI--YD----LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV--KTHDWNSII 516 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~--~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 516 (662)
...+...++..++...+.+...... .. ....+..+...+...|+.+.|...+.+..+.....+ ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 6677778888888888877654211 11 112345555677888999999999888765422222 234566678
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 517 HAFCKAGRLEDAKRTLRRMIF----LQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRK 573 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 573 (662)
.++...|++++|...+++... .+..|+. ..+..+..+|...|++++|++.+++..+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998764 3444544 57888889999999999999999998743
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.3e-08 Score=98.59 Aligned_cols=279 Identities=8% Similarity=-0.032 Sum_probs=200.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc-cchHHHHHHHHHhcCChHHHHHHHHHHHHCC----C-CCChhhH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD-RSVGFGIISACVNLGLSDKAHSILDEMNACG----C-SVGLGVY 406 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~ 406 (662)
.......+...|++++|++++++.....+.+..+. ...+..+..++...|++++|...+++..+.. . ......+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33445667899999999999999876443322111 2345567788999999999999999886632 1 1123456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----CCCccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSS----GLQLD---VGNYDALIEASITSQDFQSAFSLFRDMREARI----YDLKGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~ 475 (662)
..+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+........ ......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 67778889999999999998876542 11111 23556677888999999999999998886532 222344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVED---PRVEV--KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN---DQTY 547 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 547 (662)
+......+...+....+...+.+.... .+..+ ....+..+...+...|+.++|...+++........+ ...+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555566778889998888887765432 12111 133466677788899999999999998876432222 3466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
..+..++...|++++|...++++..... ..+..|+. ..+..+..++.+.|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENAR---SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHh---hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788899999999999999999875444 33555654 6788888999999999999999998754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.1e-08 Score=96.86 Aligned_cols=147 Identities=7% Similarity=-0.077 Sum_probs=66.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcccccchH
Q 038801 293 FYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG-NVKGLANLIIEAQKLEPSGIVVDRSVG 371 (662)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~ 371 (662)
+|+.+-..+.+.+..++|++++.+.++-.+. +...|+....++...| ++++|++.+++..+..+. +..+|
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-----~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~----~~~a~ 115 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----NYQVW 115 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----CHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh----hhhHH
Confidence 3344444444455555555555555444322 3344444444444433 245555555544432222 23334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT 450 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 450 (662)
..+...+.+.|++++|.+.++++++.. +.+...|..+..++.+.|++++|.+.|+++.+.... +...|+.+...+.+
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHH
Confidence 444444444555555555555554432 334445555555555555555555555555544211 33444444433333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=2.8e-08 Score=93.96 Aligned_cols=191 Identities=9% Similarity=0.032 Sum_probs=119.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 038801 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 383 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (662)
..+++..+|++..+...+.+...+...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566666666665444445556666666666777777777777776654322223456666777777777777777777
Q ss_pred HHHHcCCCCCcccHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 038801 463 DMREARIYDLKGSYLTIMTG-LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ-F 540 (662)
Q Consensus 463 ~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 540 (662)
++.+.+ +.+...|...... +...|+.+.|..+|+.+.+..+ .+...|...+..+.+.|+.+.|..+|++..... .
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p--~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 766654 2233333333322 2335667777777777766422 234567777777778888888888888776642 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 541 EPN--DQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 541 ~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
.|+ ...|...+..-...|+.+.+.++++++.+.++.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 332 246777776666678888888888877766653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.7e-08 Score=93.19 Aligned_cols=198 Identities=8% Similarity=0.014 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQ-DFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
.|+-+...+.+.+.+++|+++++++.+. .| +...|+....++...| ++++|+..+++..+.. |-+..+|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3344444455555555555555555554 23 3344555555555544 3555555555555543 3444555555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC--
Q 038801 483 LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQ-- 559 (662)
Q Consensus 483 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~-- 559 (662)
+...|++++|+..++++.+..+ -+...|..+...+.+.|++++|++.++++++. .| +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp--~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhhh--cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 5555566666666655554311 13456666666777777777777777777664 33 34556555554444333
Q ss_pred ----HHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCC
Q 038801 560 ----YFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV 619 (662)
Q Consensus 560 ----~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 619 (662)
+++|++.+.++. .+.|+ ...|..+...+. ....+++.+.++...+..+.+
T Consensus 198 ~~~~~~~ai~~~~~al---------~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMI---------KLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp SHHHHHHHHHHHHHHH---------HHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTC
T ss_pred hhhhhHHhHHHHHHHH---------HhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCc
Confidence 556666666666 23343 344444444433 333466666666665554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=3.8e-08 Score=93.06 Aligned_cols=184 Identities=9% Similarity=-0.009 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (662)
++|..+|++..+...+.+...+...+......|+.+.|..+++++.+..+ .....+|...+..+.+.|+.+.|.++|++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~-~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444332222223333344444444444444444444443211 11122344444444445555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 535 MIFLQFEPNDQTYLSLING-YVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 535 m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+.+.+. .+...|...... +...|+.+.|..+|+.+... ..-+...+..++..+.+.|+++.|..+|++..
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444321 111222221111 12234455555555554411 11123444444444455555555555555544
Q ss_pred hCCC-CCC----HHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 614 EMKV-FVD----KWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 614 ~~~~-~p~----~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
+..+ .|+ +|.....+=..+|+++.+..+.+++.++
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3322 222 3333344444445555555554444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=7.1e-09 Score=95.57 Aligned_cols=193 Identities=10% Similarity=-0.081 Sum_probs=111.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
++..+..++.+.|++++|...|++.++.. +.+..+|+.+..+|.+.|++++|...|++..+.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 44455666777777777777777777653 445677777777777777777777777777765221 4556677777777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC----CH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG----RL 525 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~ 525 (662)
..|++++|...|++..+.. +.+......+..++.+.+..+.+..+...........+ .++ ++..+.... ..
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW---GWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST---HHH-HHHHHTTSSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh---hhh-HHHHHHHHHHHHHHH
Confidence 7778888877777777664 33333333344444555554444444444443211111 111 222221111 12
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 526 EDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 526 ~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+.+...+..... ..|+. .+|..+...+...|++++|+..|++..
T Consensus 192 ~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 192 ERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222222211111 12222 356667788888888888888888888
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=4.7e-09 Score=100.99 Aligned_cols=218 Identities=7% Similarity=-0.063 Sum_probs=153.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHcCCCHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH--RTAEATQLVMDISSSGLQLDVGNYD-ALIEASITSQDFQSA 457 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A 457 (662)
.|.+++|..+++...+.. +.+...+..+..++...+ ++++|...+.++.+... .+...+. .....+...|.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 345677888888877754 456667777776766655 47888888888877632 2344443 344667778888999
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
+..++++.+.+ |.+...|+.+...+.+.|++++|...+.+..+. .|+ ...+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 98888888775 556677888888888888877665554443321 111 12233445667778888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 538 LQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 538 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.. .++...+..+...+...+++++|+..+.+.. ...|+ ..++..+..++.+.|++++|.++++++.+.+
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELE---------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH---------hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 53 2334566677777788899999999988877 33443 4778888889999999999999999998765
Q ss_pred C
Q 038801 617 V 617 (662)
Q Consensus 617 ~ 617 (662)
|
T Consensus 307 P 307 (334)
T d1dcea1 307 P 307 (334)
T ss_dssp G
T ss_pred c
Confidence 5
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.3e-07 Score=86.70 Aligned_cols=218 Identities=10% Similarity=-0.056 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSV---GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~ 459 (662)
.+.+..-+++........ ...+|..+..+|.+.|++++|...|++..+. .| +..+|+.+..+|.+.|++++|+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 344555556665542211 2357777888999999999999999999986 44 67889999999999999999999
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038801 460 LFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (662)
.|+++.+.. |.+..++..+...+...|+.++|...+++..+..+. +......+..++.+.+..+.+..+........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999999876 556678889999999999999999999998875322 33333344455566666666666666666532
Q ss_pred CCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 540 FEPNDQTYLSLINGYVTAEQ----YFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 540 ~~p~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
++...++ ++..+..... .+.+...+.... ...|+. .+|..+...+...|++++|.+.+++..+
T Consensus 170 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 170 --KEQWGWN-IVEFYLGNISEQTLMERLKADATDNT---------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp --CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhh---------hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2222222 2222222222 222222222111 123332 5677788899999999999999999987
Q ss_pred CCCC
Q 038801 615 MKVF 618 (662)
Q Consensus 615 ~~~~ 618 (662)
.++.
T Consensus 238 ~~p~ 241 (259)
T d1xnfa_ 238 NNVH 241 (259)
T ss_dssp TCCT
T ss_pred cCCC
Confidence 6654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=3.9e-08 Score=94.35 Aligned_cols=230 Identities=7% Similarity=-0.053 Sum_probs=145.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHHcCCH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG--LSDKAHSILDEMNACGCSVGLGVYV-PTLKAYCKEHRT 419 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~ 419 (662)
.|++++|+.+++...+..++ +...+..+..++...+ +++++...+..+.... +.+...+. .....+...+.+
T Consensus 86 ~~~~~~al~~~~~~l~~~pk----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK----SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHhCCC----cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence 34466777777776553222 2333444555555544 4677888888877754 33444443 344566667888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEV 499 (662)
Q Consensus 420 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 499 (662)
++|+..++...+.... +...|+.+..++.+.|++++|...+++..+.. | ....+...+...+..+++...+...
T Consensus 161 ~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 161 AEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8888888887776422 56777778888888888777765554443321 1 1122333445556666677777766
Q ss_pred hhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccC
Q 038801 500 VEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 500 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
..... ++...+..+...+...|+.++|...+.+..+. .|+. ..|..+..++...|++++|++.++++.
T Consensus 235 l~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai------- 303 (334)
T d1dcea1 235 LLGRA--EPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLK------- 303 (334)
T ss_dssp HHSCC--CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH-------
T ss_pred HHhCc--chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------
Confidence 65422 23345666777777888889999988888764 4543 577888888888999999999999888
Q ss_pred CCCCcccH-HHHHHHHHHH
Q 038801 579 QKGIKFEH-NLVDAFLYAL 596 (662)
Q Consensus 579 ~~~~~p~~-~~~~~l~~~~ 596 (662)
.+.|+. .-|..|...+
T Consensus 304 --~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 304 --AVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp --HHCGGGHHHHHHHHHHH
T ss_pred --HHCcccHHHHHHHHHHH
Confidence 356654 3444444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=7.2e-06 Score=76.09 Aligned_cols=133 Identities=8% Similarity=-0.029 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC-ccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCChhhHH
Q 038801 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSG-IVV-DRSVGFGIISACVNLGLSDKAHSILDEMNAC----GC-SVGLGVYV 407 (662)
Q Consensus 335 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~ 407 (662)
.....|...|++++|.+.|.++..+.... -.+ -..+|..+..+|.+.|++++|.+.+++..+. |. .....++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 34455666777777777776654421111 111 1234455566666666666666666654432 10 11123344
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 408 PTLKAYCK-EHRTAEATQLVMDISSS----GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 408 ~li~~~~~-~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.+...|.. .|++++|.+.|++..+. +..+ -..++..+...+...|++++|...|+++...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 44444433 46666666666654321 1111 1234555566666666666666666666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=4.2e-06 Score=77.74 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=128.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCCcccHHHH
Q 038801 410 LKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARI-----YDLKGSYLTI 479 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~l 479 (662)
...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.+++..+... .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45677788888888888776542 1111 135677778888888888888888887654311 1112344555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-HHHH
Q 038801 480 MTGLME-NHRPELMAAFLDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-----ND-QTYL 548 (662)
Q Consensus 480 l~~~~~-~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~ 548 (662)
...|.. .|++++|+..+.+..+- .+..+ -..+|..+...|...|++++|...|++........ .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555644 58888998888876531 12222 13468888999999999999999999988742111 11 2334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc-c---cHHHHHHHHHHHHc--cCchHHHHHHHHHHHh
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK-F---EHNLVDAFLYALVK--GGFFDAVMQVVEKSQE 614 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-p---~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~ 614 (662)
..+..+...|+++.|...+++.. ..... + .......++.++.. .+.+++|+..|+++.+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~-------~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQ-------SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG-------CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHhccHHHHHHHHHHHH-------HhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 45556677899999999999887 22211 1 12455667777655 3558888888876543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=9e-06 Score=69.88 Aligned_cols=138 Identities=8% Similarity=-0.084 Sum_probs=76.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|+++.|.+.|.++ .+++..+|..+..+|.+.|++++|++.|++..+... -+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence 33445556666666666543 234555566666666666666666666666665421 1445566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLR 533 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 533 (662)
++|+..|++............|. ..| ....++ ..++..+..+|.+.|++++|.+.|+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~-------~~~---------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYK-------ILG---------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECG-------GGT---------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHH-------Hhh---------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666655432111100000 000 001111 2345567778899999999999999
Q ss_pred HHHhCC
Q 038801 534 RMIFLQ 539 (662)
Q Consensus 534 ~m~~~~ 539 (662)
......
T Consensus 145 ~A~~~~ 150 (192)
T d1hh8a_ 145 LATSMK 150 (192)
T ss_dssp HHHTTC
T ss_pred HHHhcC
Confidence 888753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.2e-05 Score=66.76 Aligned_cols=55 Identities=13% Similarity=0.028 Sum_probs=26.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.|.+.|++++|...|++..+... -+...|..+..+|...|++++|...|++.++.
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 73 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL 73 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHH
Confidence 44455555555555555544421 13444444444555555555555555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=6.6e-05 Score=64.24 Aligned_cols=126 Identities=9% Similarity=-0.087 Sum_probs=97.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (662)
...+...|++++|++.|+++ ..++..++..+..++...|++++|.+.|++.++.+ +.+...|..+..+|.+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i-------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhh
Confidence 45567889999999998753 23566778889999999999999999999998875 56778889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCC--------------CC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 038801 417 HRTAEATQLVMDISSSGLQ--------------LD-VGNYDALIEASITSQDFQSAFSLFRDMREARIY 470 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~--------------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 470 (662)
|++++|.+.|++....... ++ ..++..+..++.+.|++++|.+.|....+....
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999987653111 00 134556677788888999998888887766433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.4e-05 Score=62.20 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFL 593 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~ 593 (662)
...+.+.|++++|+..|++.++. .| +...|..+..+|...|++++|+..++++.+ +.| +...|..+.
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~~g 78 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---------LKPDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HCTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHH---------hccchhhHHHHHH
Confidence 44556667777777777777664 34 445677777777777777777777777762 222 345666677
Q ss_pred HHHHccCchHHHHHHHHHHHhCCCC
Q 038801 594 YALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.++...|++++|+..+++..+..+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777777655443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.14 E-value=9.5e-06 Score=70.51 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=74.7
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 038801 471 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLS 549 (662)
Q Consensus 471 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 549 (662)
|+...+......+.+.|++++|+..|.+..+..+ -+...|+.+..+|.+.|++++|+..|++.++ +.|+ ..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 4455566667788888888888888888776422 2456788888888888888888888888886 3564 467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 038801 550 LINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+..+|...|++++|+..|+++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888888888888877
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.14 E-value=7.4e-06 Score=71.25 Aligned_cols=96 Identities=9% Similarity=0.033 Sum_probs=62.5
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN---DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
|+...+......|.+.|++++|+..|++.+ ..+ ...|..+..+|.+.|++++|+..|+++. .+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal----~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---------~l~ 68 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAI----TRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---------ELD 68 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---------TSC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---------HhC
Confidence 444555566667777777777777777665 643 2466666777777777777777777766 344
Q ss_pred cc-HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 584 FE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 584 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
|+ ...|..+..++.+.|++++|+..++++.+.
T Consensus 69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 53 356666777777777777777777766543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.0027 Score=58.59 Aligned_cols=285 Identities=12% Similarity=0.070 Sum_probs=132.5
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHH
Q 038801 254 PNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETY 333 (662)
Q Consensus 254 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 333 (662)
||..-...+...|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+. . +..+|
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~--~--------~~~~~ 72 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA--N--------STRTW 72 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH--T--------CHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc--C--------CHHHH
Confidence 3444444455666677777777777754332 455666667777777776653221 1 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 334 CEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 334 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
..+...+.+.....-+.- .. .....+......++..|-..|.+++...+++...... ..+...++-++..|
T Consensus 73 k~~~~~l~~~~e~~la~i-----~~---~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~ly 143 (336)
T d1b89a_ 73 KEVCFACVDGKEFRLAQM-----CG---LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 143 (336)
T ss_dssp HHHHHHHHHTTCHHHHHH-----TT---TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHH-----HH---HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHH
Confidence 777777766655543211 11 2222333344557777777777777777777665432 45566677777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--------CCCCcccHHHHHHHHHh
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR--------IYDLKGSYLTIMTGLME 485 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~ 485 (662)
++.+ .++..+ .+...+ +......++..|-+.+-++++.-++.++.+.. .+++.......+..+.+
T Consensus 144 ak~~-~~kl~e---~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k 216 (336)
T d1b89a_ 144 SKFK-PQKMRE---HLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 216 (336)
T ss_dssp HTTC-HHHHHH---HHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH
T ss_pred HHhC-hHHHHH---HHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHc
Confidence 7754 233333 332211 11222333444444444444444433321110 13333333444444455
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 565 (662)
..+.+...+......+. .|+ ..+.++......-+..+. +..+-+.++..-...
T Consensus 217 ~~N~e~~~~~i~~yL~~---~p~--~i~~lL~~v~~~~d~~r~----------------------V~~~~k~~~l~li~p 269 (336)
T d1b89a_ 217 VANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRA----------------------VNYFSKVKQLPLVKP 269 (336)
T ss_dssp CSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHH----------------------HHHHHHTTCTTTTHH
T ss_pred cCChHHHHHHHHHHHHc---CHH--HHHHHHHHhccCCCHHHH----------------------HHHHHhcCCcHHHHH
Confidence 44444444433333321 121 123333333333333222 333334455555555
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHH
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
+++... ..+. ..+.+++...|...++++.-.+.++
T Consensus 270 ~Le~v~-------~~n~---~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 270 YLRSVQ-------NHNN---KSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHH-------TTCC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH-------HcCh---HHHHHHHHHHHhCcchhHHHHHHHH
Confidence 565555 4342 3567788888888888765444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.4e-05 Score=62.44 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCCCCCcccH-HH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE---QYFSVLMMWHEIKRKISTDGQKGIKFEH-NL 588 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~ 588 (662)
..+++.+...+++++|.+.|++.++.+ ..+..++..+..++.+.+ ++++|+.+++++. ..+..|+. .+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l-------~~~~~~~~~~~ 74 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDY 74 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-------hccCCchHHHH
Confidence 456777888889999999999988853 335578888888887644 4556899998888 44444443 46
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 589 VDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+..+..+|.+.|++++|++.++++.+.+|.
T Consensus 75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 75 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence 777888899999999999999999876654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3e-05 Score=64.20 Aligned_cols=95 Identities=19% Similarity=0.093 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVD 590 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~ 590 (662)
......|.+.|++++|+..|++.++. .| +...|..+..+|...|++++|+..|+++. .+.|+. ..|.
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal---------~~~p~~~~a~~ 82 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAI---------ELDKKYIKGYY 82 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHH---------HHcccchHHHH
Confidence 34455677889999999999988875 45 45688888888889999999999999888 334543 7788
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.++.++...|++++|...+++..+.++.
T Consensus 83 ~~g~~~~~~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 83 RRAASNMALGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 8888899999999999999998777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=4.3e-05 Score=59.29 Aligned_cols=89 Identities=15% Similarity=0.016 Sum_probs=46.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
.+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+....+.+. .+...|..+..++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHHH
Confidence 3444555555555555555443 34445555555555555555555555555554421 244555555555555555555
Q ss_pred HHHHHHHHHHc
Q 038801 457 AFSLFRDMREA 467 (662)
Q Consensus 457 A~~~~~~m~~~ 467 (662)
|+..|++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=0.0022 Score=57.72 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
.+..|...+...+++++|.+.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 34445555566677777777777776655 33444445555554 446666666666666543 223333333
Q ss_pred HHHHc----CCCHHHHHHHHHHHHHcC
Q 038801 446 EASIT----SQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 446 ~~~~~----~g~~~~A~~~~~~m~~~~ 468 (662)
..+.. .++.+.|...++...+.|
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhHHHHHHHhhhhhhh
Confidence 33222 345566666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.98 E-value=0.0023 Score=57.50 Aligned_cols=96 Identities=10% Similarity=-0.056 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChh
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN----LGLSDKAHSILDEMNACGCSVGLG 404 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~ 404 (662)
|+..+..|...+-+.+++++|++.|++..+ .| +...+..|...|.. ..+...+...+....+.+ +..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~---~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~ 71 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 71 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccc
Confidence 445566666667777777777777777655 33 23334445445544 456677777777766655 223
Q ss_pred hHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 038801 405 VYVPTLKAYCK----EHRTAEATQLVMDISSSG 433 (662)
Q Consensus 405 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 433 (662)
....+...+.. .++.+.|...++...+.|
T Consensus 72 a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 72 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 33333333332 345667777777666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=2.8e-05 Score=60.67 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=63.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccc-hhhHHHHHHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR---PELMAAFLDEVVEDPRVEVK-THDWNSIIHA 518 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 518 (662)
.++..+...+++++|.+.|++....+ |.+..++..+..++.+.++ .++|+.+++++... ...|+ ..+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHH
Confidence 45555666666666666666666655 4555566666666655443 34566777766653 22232 3356677888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQ 545 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (662)
|.+.|++++|.+.|+++++. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 88888888888888888873 67654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00012 Score=57.62 Aligned_cols=108 Identities=9% Similarity=-0.021 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVD 590 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~ 590 (662)
+..+...|.+.|++++|+..|.+.++.+ +.+...|..+..+|.+.|++++|+..++++.+.-+.. ....+. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence 5567788999999999999999999863 2356799999999999999999999999998443321 111122 25788
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCCCHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 622 (662)
.+...+...+++++|++.+++.......++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 115 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHH
Confidence 88889999999999999999987665555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.0076 Score=55.42 Aligned_cols=174 Identities=9% Similarity=-0.015 Sum_probs=95.4
Q ss_pred chhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHH
Q 038801 66 DNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTV 145 (662)
Q Consensus 66 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (662)
++......+..-|-+.|.++.|..+|..+.. |..++..+.+.++...+.+.+... -+..++
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~----------~~~~~~ 72 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA----------NSTRTW 72 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH----------TCHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc----------CCHHHH
Confidence 3444555666667788999999999987743 777888888888755555544322 245677
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 146 HTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
..+...+.+......| .+.......... ....++..|-..|.++....+++..... ...+...++-
T Consensus 73 k~~~~~l~~~~e~~la-----~i~~~~~~~~~d-~l~~~v~~ye~~~~~e~Li~~Le~~~~~--------~~~~~~~~~~ 138 (336)
T d1b89a_ 73 KEVCFACVDGKEFRLA-----QMCGLHIVVHAD-ELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTE 138 (336)
T ss_dssp HHHHHHHHHTTCHHHH-----HHTTTTTTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHTTS--------TTCCHHHHHH
T ss_pred HHHHHHHHhCcHHHHH-----HHHHHHhhcCHH-HHHHHHHHHHHcCChHHHHHHHHHHHcC--------CccchHHHHH
Confidence 7888888877655433 111211111222 2345777788888999998888876431 3556667888
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELES 280 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 280 (662)
++..|++. +.++..+.++... +.+-...+++.|-+.+.++++.-++.
T Consensus 139 L~~lyak~--~~~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~ 185 (336)
T d1b89a_ 139 LAILYSKF--KPQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYD 185 (336)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHh--ChHHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHH
Confidence 88888874 4555544444331 22333445566655555554444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.86 E-value=4.5e-05 Score=58.61 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDA 591 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~ 591 (662)
.+...+.+.|++++|...|++.++. .| +...|..+..++.+.|++++|+..+++.. .+.|+ ...+..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---------~~~p~~~~a~~~ 89 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHAR---------MLDPKDIAVHAA 89 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccc---------ccccccccchHH
Confidence 3455667777777777777777764 45 34677777777777777777777777777 23443 466677
Q ss_pred HHHHHHccCchHHHHHHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m 612 (662)
+...+...|++++|.+.+++.
T Consensus 90 la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 90 LAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 777777777777777777764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00018 Score=60.07 Aligned_cols=98 Identities=9% Similarity=0.040 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQ-FEP-------------NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTD 577 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p-------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 577 (662)
+......+.+.|++++|+..|++.++.- ..+ -..+|+.+..+|.+.|++++|+..+++..
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al------ 89 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL------ 89 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh------
Confidence 3344455566666666666666655420 000 02467778888999999999999999999
Q ss_pred CCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 578 GQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 578 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+.| +...+..+..++...|++++|...|+++.+.++.
T Consensus 90 ---~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 128 (170)
T d1p5qa1 90 ---ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128 (170)
T ss_dssp ---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ---hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 3445 5688899999999999999999999999887764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.82 E-value=9.3e-05 Score=56.74 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=46.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQD 453 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 453 (662)
+...+.+.|++++|...|++.+... +-+...|..+..++.+.|++++|+..|++..+... -+...|..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCC
Confidence 3344455555555555555555543 23455555555555555555555555555554421 134455555555555555
Q ss_pred HHHHHHHHHH
Q 038801 454 FQSAFSLFRD 463 (662)
Q Consensus 454 ~~~A~~~~~~ 463 (662)
+++|++.+++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00084 Score=55.73 Aligned_cols=62 Identities=13% Similarity=0.006 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
+|+.+..+|.+.|++++|+..++...+. .| ++..|..+..+|...|++++|...|++..+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4455556666666666666666666655 23 55566666666666666666666666666653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00034 Score=54.97 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
..+...|.+.|++++|+..|.+..+.+. .+...|..+..+|.+.|++++|+..++++++... .+...+..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~-~~~~~~~~~------- 78 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQI------- 78 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc-ccHHHHHHH-------
Confidence 3445555666666666666666555421 1455555556666666666666666655554320 010011100
Q ss_pred CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 487 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
..+|..+...+...+++++|.+.|++....
T Consensus 79 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 79 ----------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 134556666677777777777777776653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.00056 Score=57.20 Aligned_cols=121 Identities=10% Similarity=-0.043 Sum_probs=77.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (662)
.......|++++|.+.|.+...+.+....++... +.+ +...-..+.. .....+..+...+.+.
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-----------~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQF--VEPFATALVE----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STT--HHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-----------hHH--HHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 3456778888888888888766544333222110 000 0111111111 1134566778888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCccc
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE-----ARIYDLKGS 475 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 475 (662)
|++++|...++++.+.. .-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888888763 22678888888888888888888888888643 578777544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=0.001 Score=55.50 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=88.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 523 (662)
........|++++|.+.|.+..+..- -+. +......+.+...-..+... ....+..+..++...|
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~r-G~~---------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWR-GPV---------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC-SST---------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCc-ccc---------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCC
Confidence 34567888999999999999887521 110 00001111111111111111 2346788999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHH
Q 038801 524 RLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNL 588 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 588 (662)
++++|+..++++++. .| +...|..++.+|...|+..+|++.|+++.+.+.. +.|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~--eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD--DLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--HHSCCCCHHH
T ss_pred CchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--HhCCCcCHHH
Confidence 999999999999985 55 6689999999999999999999999999766554 4689998765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=4.1e-05 Score=76.80 Aligned_cols=168 Identities=11% Similarity=-0.082 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHH
Q 038801 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYA--LKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 237 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
+..+.+.++...+..-.++..-....+..+. ..+.++.+...+....+.. .++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 4556666666665443344333322222221 2233444444333332221 234556677777788888888887765
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHH
Q 038801 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 394 (662)
...+.-. ...++..+...+...|++++|...|++..++.|. +...|+.+...+...|+..+|...|.+.
T Consensus 144 ~~al~~~-------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~----~~~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 144 SSSCSYI-------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp CHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCC-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5444321 1246667778888889999999999888765443 4567888888888889999999888888
Q ss_pred HHCCCCCChhhHHHHHHHHHHcC
Q 038801 395 NACGCSVGLGVYVPTLKAYCKEH 417 (662)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g 417 (662)
+... +|-...+..|...|.+..
T Consensus 213 l~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 213 IAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HhCC-CCCHHHHHHHHHHHHHhh
Confidence 8765 566777788877776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=2.6e-05 Score=78.32 Aligned_cols=228 Identities=8% Similarity=-0.044 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHH
Q 038801 347 KGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL-GVYVPTLKAYCKEHRTAEATQL 425 (662)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 425 (662)
-+|.+.|++..++.+. ....+..+..++...+++++| |++++... |+- ..++..- .+.+ ..+..+.+.
T Consensus 3 ~eA~q~~~qA~~l~p~----~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw~-~~y~~~ie~ 71 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKAD----MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLWN-HAFKNQITT 71 (497)
T ss_dssp HHHHHHHHHHHHHHGG----GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHHH-HHTHHHHHH
T ss_pred HHHHHHHHHHHHcCCC----CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHHH-HHHHHHHHH
Confidence 3688899988764332 123344566667777777765 66665532 221 1111111 1111 124556777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 038801 426 VMDISSSGLQLDVGNYDALIEASI--TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503 (662)
Q Consensus 426 ~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 503 (662)
++...+....++..-....+..+. ..+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...+.+....
T Consensus 72 ~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 149 (497)
T d1ya0a1 72 LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY- 149 (497)
T ss_dssp HHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH-
T ss_pred HHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 777766544444433333222222 2344455554444433332 455566777888888889988888877765442
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCC
Q 038801 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGI 582 (662)
Q Consensus 504 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 582 (662)
.| ..++..+...+...|++++|...|++..+. .|+. .+|+.|...+...|+..+|+..|.+.. ...
T Consensus 150 --~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral-------~~~- 216 (497)
T d1ya0a1 150 --IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSI-------AVK- 216 (497)
T ss_dssp --HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH-------SSS-
T ss_pred --CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hCC-
Confidence 11 246777888999999999999999999984 6766 799999999999999999999999998 322
Q ss_pred cccHHHHHHHHHHHHccC
Q 038801 583 KFEHNLVDAFLYALVKGG 600 (662)
Q Consensus 583 ~p~~~~~~~l~~~~~~~g 600 (662)
.|-...+..|...+.+..
T Consensus 217 ~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp BCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 345567777777665443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.52 E-value=0.00084 Score=54.57 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccC
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQ----FEPN-----------DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
.....+.+.|++++|+..|.+.+..- ..++ ..+|..+..+|.+.|++++|++.++++.
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al------- 94 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL------- 94 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc-------
Confidence 34445556666666666666655421 0011 2467778888999999999999999998
Q ss_pred CCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 579 QKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 579 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+.| +...|..+..++...|++++|+..|++..+.++.
T Consensus 95 --~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 95 --KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp --HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred --cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3345 4588999999999999999999999999887765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=0.00058 Score=56.75 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=67.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCC
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFL--------------QFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQ 579 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~--------------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 579 (662)
....+...|++++|++.|.++++. .+.| +...|..+..++.+.|++++|+..++++.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al-------- 104 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL-------- 104 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh--------
Confidence 344445556666666555554420 1122 23467778888889999999999999998
Q ss_pred CCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 580 KGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 580 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+.|+ ...|..+..++.+.|++++|++.|+++.+..+.
T Consensus 105 -~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 105 -EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp -TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34454 478888999999999999999999999887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.48 E-value=0.002 Score=52.22 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
+|+.+..+|.+.|++++|++.+++..+.. +.++.+|..+..++...|++++|...|++..+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55556666666777777777776666552 1255666666677777777777777776666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.42 E-value=0.0032 Score=51.96 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
+|+.+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555666666666666666666666542 2255666666666666777777777776666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.35 E-value=0.0051 Score=50.62 Aligned_cols=126 Identities=12% Similarity=0.074 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFL---QFEPN-----------DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTD 577 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 577 (662)
+.-....+.+.|++++|...|++.+.. ....+ ...|..+..+|.+.|++++|+..+++..
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al------ 91 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL------ 91 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh------
Confidence 344455556666666666666655531 11111 2356667788899999999999999999
Q ss_pred CCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-hh-hhhhhHHHHHHHH
Q 038801 578 GQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMEN-HK-KLKVAKLRKRNFK 646 (662)
Q Consensus 578 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~-~~-~~~~a~~~~~~~~ 646 (662)
.+.| +...|..+..++...|++++|.+.++++.+.++.-......+..+.. .+ ..+..++.+.+++
T Consensus 92 ---~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 92 ---GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp ---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2334 45788889999999999999999999998876653233333444432 22 2233444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.006 Score=50.25 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+..|++..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34566667777788888888888888776532 256677777788888888888888888777764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.28 E-value=0.0014 Score=53.50 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=77.0
Q ss_pred hhHHHH--HHHHHhcCCHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 510 HDWNSI--IHAFCKAGRLEDAKRTLRRMIFLQ-FEPN----------DQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 510 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~-~~p~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
.+|..+ ...+.+.|++++|++.|++.++.. -.|+ ...|+.+..+|...|++++|++.+++.....+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 455667899999999999988621 0121 357888999999999999999999999865543
Q ss_pred cCCCCCc--cc-HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 577 DGQKGIK--FE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 577 ~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
....... +. ...+..+..+|.+.|++++|++.|++..+.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111111 11 235677889999999999999999997643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0035 Score=45.72 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCC
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV 619 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 619 (662)
...+--+...+.+.|++++|+..|++..+..+... ...++ ..++..|..++.+.|++++|++.++++.+.+|.-
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~--~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE--ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh--ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 33344678888999999999999999987665421 22233 4788999999999999999999999998877663
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.02 E-value=0.0084 Score=48.51 Aligned_cols=67 Identities=6% Similarity=0.083 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFL-----QFEPND-----QTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
..|+.+..+|...|++++|.+.+++.++. ...++. ..|+.+..+|...|++++|++.|++..+..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 46888888999999999999988887752 122322 25677889999999999999999999866554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.98 E-value=0.00097 Score=53.54 Aligned_cols=76 Identities=9% Similarity=0.141 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHH
Q 038801 524 RLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAE-----------QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDA 591 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 591 (662)
.+++|...|++.++. .|+ ..+|..+..+|...| ++++|.+.|++.. .+.|+...|..
T Consensus 56 ~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal---------~l~P~~~~~~~ 124 (145)
T d1zu2a1 56 MIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV---------DEQPDNTHYLK 124 (145)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---------HHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHh--cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc---------ccCCCHHHHHH
Confidence 345667777766653 443 356666666665433 3567777777777 45676665554
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCC
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
-+..+ ..|.+++.+..+.|
T Consensus 125 ~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 125 SLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHH------HHHHHHHHHHHHHh
Confidence 44333 34555555555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.94 E-value=0.00072 Score=60.52 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=37.3
Q ss_pred HhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 302 VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKL 359 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 359 (662)
.+.|++++|+..+.+.++..+. |...+..+...++..|++++|.+.|+...++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-----d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-----DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3567777777777777776544 6677777777777777777777777776553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.93 E-value=0.00084 Score=60.05 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=26.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 415 KEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
+.|++++|+..+++.++. .| |...+..+...|+..|++++|...|+...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345555555555555544 22 4455555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.70 E-value=0.0051 Score=49.07 Aligned_cols=76 Identities=17% Similarity=0.031 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-----------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH-----------RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
+++|+..|++.++.. +.+...|..+..+|...| .+++|.+.|++..+. .|+...|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence 345556666555543 344555555555555433 245566666665554 45544444333322
Q ss_pred CHHHHHHHHHHHHHcC
Q 038801 453 DFQSAFSLFRDMREAR 468 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~ 468 (662)
.+|.+++.+..+.|
T Consensus 130 --~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQG 143 (145)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHHh
Confidence 34455555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.28 E-value=0.11 Score=38.34 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
..++.-++....+|+-+.-.++++.+.+.+ +|+....-.+..+|.+.|...++-+++.++. +.|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~AC-------e~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEAC-------KKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-------HHhHH
Confidence 456677788888999999999999977754 7888888899999999999999999999998 67765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.025 Score=40.84 Aligned_cols=68 Identities=18% Similarity=-0.003 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc---cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038801 330 KETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD---RSVGFGIISACVNLGLSDKAHSILDEMNAC 397 (662)
Q Consensus 330 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 397 (662)
...+-.+...+.+.|++++|.+.|++..++.+....+. ..++..+..++.+.|++++|...++++++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 33344555566666666666666666544322211111 123444445555555555555555555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.89 E-value=0.47 Score=34.97 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=26.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 038801 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI 469 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 469 (662)
+..+.+.|+-+.-.+++..+.+. -+++....-.+..+|-+.|...++-+++.+..++|+
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444444444444444444332 234444444444455555555555555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.32 E-value=0.62 Score=35.53 Aligned_cols=110 Identities=10% Similarity=-0.026 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTA 420 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 420 (662)
|+++|+++|++..+ .+ +...+..|. .....+.++|.+.+++..+.| +...+..|...|.. ..+.+
T Consensus 8 d~~~A~~~~~kaa~---~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 8 DLKKAIQYYVKACE---LN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHH---TT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHH---CC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhH
Confidence 45666677766554 22 111122221 122345666666666666655 23334444444443 34566
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASIT----SQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 468 (662)
+|.++|++..+.| +......|...|.. ..+.++|..+|++..+.|
T Consensus 77 ~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 77 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666666666554 33333344444433 235556666666655554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=2.6 Score=40.02 Aligned_cols=332 Identities=6% Similarity=-0.013 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC-cHHhHHHH
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL--KGLQEKIVELESLMNEFGFSS-QMVFYSSL 297 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l 297 (662)
..|.....++. + |+.+.+.++...+.+. | ...|-..-..-.. ....+++.. .+.+..-.| ........
T Consensus 8 ~~y~~a~~a~~-~-~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~---Fl~~~p~~P~~~~lr~~~ 78 (450)
T d1qsaa1 8 SRYAQIKQAWD-N-RQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTN---FVRANPTLPPARTLQSRF 78 (450)
T ss_dssp HHHHHHHHHHH-T-TCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHH---HHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-C-CCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHH---HHHHCCCChhHHHHHHHH
Confidence 44544555444 3 8888888887777432 3 3334333222222 223344333 333432122 12233445
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
+..+.+.+++......+ .. ...+...-.....+....|+.++|.+.+..+=. .....|
T Consensus 79 l~~L~~~~~w~~~~~~~----~~-----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~--~~~~~p----------- 136 (450)
T d1qsaa1 79 VNELARREDWRGLLAFS----PE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL--TGKSQP----------- 136 (450)
T ss_dssp HHHHHHTTCHHHHHHHC----CS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--CSSCCC-----------
T ss_pred HHHHHhccCHHHHHHhc----cC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCc-----------
Confidence 66777888877655432 22 122555555677788889999888877765422 111222
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 457 (662)
+.+..+|..+.+.| ..+...+-.-+......|+...|..+...+... ........+....... .+
T Consensus 137 -------~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~---~~ 201 (450)
T d1qsaa1 137 -------NACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPN---TV 201 (450)
T ss_dssp -------THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGG---GH
T ss_pred -------hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChH---hH
Confidence 23334444444444 233334334444555556666666655433211 1222333333322211 11
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCccchh--hHHHHHHHHHhcCCHHHHHHHHH
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLME--NHRPELMAAFLDEVVEDPRVEVKTH--DWNSIIHAFCKAGRLEDAKRTLR 533 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~ 533 (662)
..... . .+.+......+..++.+ ..+.+.+..++..........++.. ....+.......+..+.+..++.
T Consensus 202 ~~~~~---~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 276 (450)
T d1qsaa1 202 LTFAR---T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (450)
T ss_dssp HHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HHHHh---c--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 11111 1 11222222222333322 2345666666666555433332211 01111122223455566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 534 RMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 534 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.....+ .+.....-.+......+++..+...++.|. ..... ...-.--+.+++...|+.++|..++....
T Consensus 277 ~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~-------~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 277 DAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLP-------MEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-------TTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcC-------ccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 555432 233333334444455667777776666554 21111 12222335566777777777777777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.28 E-value=1 Score=34.23 Aligned_cols=46 Identities=11% Similarity=0.020 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 038801 523 GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIK 571 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 571 (662)
.+.++|.++|++..+.| +......|...|.. ..+.++|.++|++..
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 35667777777766654 23333344444443 356677777777666
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.86 E-value=1.3 Score=32.92 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhhcccCCCCCcc-cH-HHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 541 EPNDQTYLSLINGYVTA---EQYFSVLMMWHEIKRKISTDGQKGIKF-EH-NLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 541 ~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
.|...|--....+++++ ++.++++.+++++. .. .| +. ..+-.|..+|.+.|++++|.++++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~-------~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-------KE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH-------HH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------hc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34444444455555544 45567888888877 22 23 22 45566777788888888888888888776
Q ss_pred CCC
Q 038801 616 KVF 618 (662)
Q Consensus 616 ~~~ 618 (662)
.+.
T Consensus 103 eP~ 105 (124)
T d2pqrb1 103 ERN 105 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.74 E-value=0.42 Score=35.62 Aligned_cols=71 Identities=8% Similarity=-0.098 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHccC---chHHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 583 KFEHNLVDAFLYALVKGG---FFDAVMQVVEKSQEMKVF-V-DKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 583 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~-p-~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
.|+..|--.+.++++++. +.++++.+++++.+.++. . |.+.++..++...|+++.|++..+++++++|.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 355556666777887664 466899999998776543 2 5667777778889999999999999999999754
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.07 E-value=7.3 Score=26.99 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 236 SVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 236 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++++..+... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444556666666667778888888888888888888888888888776542 234556665554
|