Citrus Sinensis ID: 038806

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
KSRDARDLIFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQTTEA
Secondary Structure (PSIPRED)
ccccccccEEccccccEEEEEEEccEEEccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccEEEEEEccccccccEcHEEEEEccccccccccEcHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
ksrdardlifnspsvgtfivsfqrphrvgtvncEVLLirktsplpdqkvKMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKtadmkekgadpydlkqQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQTTEA
Flexible Loop (DISEMBL)
ksrdardlifnspsvgtfivsfqrphrvgtVNCEVLLirktsplpdqkvkmatvrnlkiktstckrvvkelHSYEkevereaaktadmkekgadpydlKQQENVLAESRMMIPDCRKRLESALAELKAALTEleeenqegqeiedarstIADVEKLFQTTEA
Low Complexity Region (SEG)
KSRDARDLIFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRlesalaelkaalteleeenqegqeieDARSTIADVEKLFQTTEA
Disordered region (IsUnstruct)
*******LIFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVKEL*******************************************************************************************
Disordered Region (DISOPRED)
****ARD*IFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRK***************NLKIKTSTCKRVVKELHSYEKEVER***************YDLKQQENVLAESRMMIPDCRKRLESALAELKAALT***********IEDARSTIADVEKLF*****
Disordered Region (DISEMBL)
KSRDARDLIFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTE************DARSTIADVEKLFQTTEA
Disordered Region (DISPRO)
*SRDARDLIFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KSRDARDLIFNSPSVGTFIVSFQRPHRVGTVNCEVLLIRKTSPLPDQKVKMATVRNLKIKTSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxGADPYDLKQQENVLAESRMMIPDCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRSTIADVEKLFQTTEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
O04350	113	Tubulin-specific chaperon	yes	no	0.691	0.991	0.814	2e-46
O75347	108	Tubulin-specific chaperon	yes	no	0.611	0.916	0.44	2e-14
Q6PEC1	108	Tubulin-specific chaperon	yes	no	0.611	0.916	0.44	4e-14
P48428	108	Tubulin-specific chaperon	yes	no	0.611	0.916	0.43	8e-14
P48427	108	Tubulin-specific chaperon	yes	no	0.611	0.916	0.44	8e-14
P80584	108	Tubulin-specific chaperon	yes	no	0.611	0.916	0.43	2e-13
P80585	108	Tubulin-specific chaperon	yes	no	0.450	0.675	0.493	3e-12
P48606	106	Tubulin-specific chaperon	yes	no	0.617	0.943	0.342	6e-08
Q75JC8	113	Tubulin-specific chaperon	yes	no	0.623	0.893	0.320	0.0005

>sp|O04350|TBCA_ARATH Tubulin-specific chaperone A OS=Arabidopsis thaliana GN=At2g30410 PE=1 SV=2

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 102/113 (90%), Gaps = 1/113 (0%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 111 MIPDCRKRLESALAELKAALTELEE-ENQEGQEIEDARSTIADVEKLFQTTEA 162
           MIPDC KRLESALA+LK+ L ELEE + +EG EIEDA+ T+ADVEK F T +A
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 113

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|O75347|TBCA_HUMAN Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           VR +KIKT   KR+VKE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMMIP
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
           DC++RLE+A  +L+  L E E++ +E +E ++AR  +  V
Sbjct: 66  DCQRRLEAAYLDLQRIL-ENEKDLEEAEEYKEARLVLDSV 104

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Homo sapiens (taxid: 9606)

>sp|Q6PEC1|TBCA_RAT Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           VR +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIP
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
           DC++RLE+A  +L+  L E E++ +E +E ++AR  +  V
Sbjct: 66  DCQRRLEAAYTDLRQIL-ESEKDLEEAEEYKEARIVLDSV 104

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Rattus norvegicus (taxid: 10116)

>sp|P48428|TBCA_MOUSE Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=2 SV=3

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           VR +KIKT   +R+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIP
Sbjct: 6   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
           DC++RLE+A  +L+  L E E++ +E +E ++AR  +  V
Sbjct: 66  DCQRRLEAAYTDLQQIL-ESEKDLEEAEEYKEARVVLDSV 104

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Mus musculus (taxid: 10090)

>sp|P48427|TBCA_BOVIN Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           VR +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIP
Sbjct: 6   VRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
           DC++RLE+A  +L   L E E++ +E +E ++AR  +  V
Sbjct: 66  DCQRRLEAAHTDL-LQLLESEKDLEEAEEYKEARLVLDSV 104

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Bos taurus (taxid: 9913)

>sp|P80584|TBCA_RABIT Tubulin-specific chaperone A OS=Oryctolagus cuniculus GN=TBCA PE=1 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           VR +KIKT   KR+VKE   YEKE +++  K   M+ +  + Y +K+Q  +L ESRMMIP
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYAIKKQAEILQESRMMIP 65

Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADV 153
           DC++RLE+A  +L+  L E E++ +E +E ++AR  +  V
Sbjct: 66  DCQRRLEAACTDLQQIL-ESEKDLEEAEEYKEARLVLDSV 104

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Oryctolagus cuniculus (taxid: 9986)

>sp|P80585|TBCA_CHICK Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 49/73 (67%)

Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           +R +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMMIP
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query: 114 DCRKRLESALAEL 126
           DC++RLE A A+L
Sbjct: 66  DCQRRLEIAHADL 78

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Gallus gallus (taxid: 9031)

>sp|P48606|TBCA_YEAST Tubulin-specific chaperone A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBL2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 56  NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQENVLAESRMMIPD 114
            L IK    KR+ KE   Y++E++ + A  A +KE K  DPYDLK+QE VL +++ ++P 
Sbjct: 5   QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLP- 63

Query: 115 CRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQT 159
               L   + E K  L +  +  Q  +++ DARS I   ++L  +
Sbjct: 64  ---TLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLDS 105

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q75JC8|TBCA_DICDI Tubulin-specific chaperone A OS=Dictyostelium discoideum GN=tbca PE=3 SV=3

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMK-EKGADPYDLKQQENVLAESR 109
           + T R+LKIK    KR+ K+   Y+KE + +       K ++  D YD+K+Q  +L E++
Sbjct: 3   LDTKRSLKIKIDALKRLEKDYMLYKKEEQLQIENVERFKADETKDIYDVKKQIEILDENK 62

Query: 110 MMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIAD 152
            MI D   R+ + L +    L E + E+ +G EI      I D
Sbjct: 63  TMIIDSVSRVTAFLVQFSEFLEEHKNED-DGSEIWKDSYDIID 104

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
225453329	113	PREDICTED: tubulin-specific chaperone A	0.691	0.991	0.831	4e-47
255565982	113	tubulin-specific chaperone A (tubulin-fo	0.691	0.991	0.805	2e-45
305677798	116	Chain A, Crystal Structure Of Tubulin Fo	0.691	0.965	0.814	9e-45
18402340	113	tubulin-specific chaperone A [Arabidopsi	0.691	0.991	0.814	1e-44
351725067	114	uncharacterized protein LOC100500215 [Gl	0.672	0.956	0.809	7e-43
351721102	113	uncharacterized protein LOC100527822 [Gl	0.685	0.982	0.785	1e-42
218191813	227	hypothetical protein OsI_09440 [Oryza sa	0.691	0.493	0.767	3e-42
242063494	112	hypothetical protein SORBIDRAFT_04g03717	0.685	0.991	0.774	4e-42
224124008	115	tubulin folding cofactor [Populus tricho	0.685	0.965	0.776	5e-42
47848185	112	putative tubulin folding cofactor A [Ory	0.685	0.991	0.774	6e-42

>gi|225453329|ref|XP_002270593.1| PREDICTED: tubulin-specific chaperone A [Vitis vinifera] gi|147854591|emb|CAN82778.1| hypothetical protein VITISV_011414 [Vitis vinifera] gi|297734639|emb|CBI16690.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 102/113 (90%), Gaps = 1/113 (0%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR++KE HSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATIRNLKIKTSTCKRIIKEFHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 111 MIPDCRKRLESALAELKAALTELEEENQ-EGQEIEDARSTIADVEKLFQTTEA 162
           MIPDCRKRLE++LA+LK  L ELEE NQ EG EIEDARST A+V+  FQTTE 
Sbjct: 61  MIPDCRKRLEASLADLKGTLAELEESNQKEGPEIEDARSTTAEVDNFFQTTEG 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565982|ref|XP_002523979.1| tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative [Ricinus communis] gi|223536706|gb|EEF38347.1| tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative [Ricinus communis]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RN+KIKTS CKR+VKELHSYEKEVEREAAKT DMK+KGADPYDLKQQENVLAESRM
Sbjct: 1   MATIRNVKIKTSACKRIVKELHSYEKEVEREAAKTTDMKDKGADPYDLKQQENVLAESRM 60

Query: 111 MIPDCRKRLESALAELKAALTELEE-ENQEGQEIEDARSTIADVEKLFQTTEA 162
           MIPDCRKRLE+A+A+LK  L ELEE +N++G EIEDARSTI +VE+LFQ T+A
Sbjct: 61  MIPDCRKRLEAAIADLKGTLVELEESDNKDGPEIEDARSTITEVEQLFQATDA 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|305677798|pdb|3MXZ|A Chain A, Crystal Structure Of Tubulin Folding Cofactor A From Arabidopsis Thaliana

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 102/113 (90%), Gaps = 1/113 (0%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 4   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 63

Query: 111 MIPDCRKRLESALAELKAALTELEE-ENQEGQEIEDARSTIADVEKLFQTTEA 162
           MIPDC KRLESALA+LK+ L ELEE + +EG EIEDA+ T+ADVEK F T +A
Sbjct: 64  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 116

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402340|ref|NP_565699.1| tubulin-specific chaperone A [Arabidopsis thaliana] gi|334184582|ref|NP_001189640.1| tubulin-specific chaperone A [Arabidopsis thaliana] gi|21542453|sp|O04350.2|TBCA_ARATH RecName: Full=Tubulin-specific chaperone A; AltName: Full=TCP1-chaperonin cofactor A; AltName: Full=Tubulin-folding cofactor A; Short=CFA gi|20514257|gb|AAM22957.1|AF486848_1 tubulin folding cofactor A [Arabidopsis thaliana] gi|15293037|gb|AAK93629.1| putative TCP1-chaperonin cofactor A isolog [Arabidopsis thaliana] gi|20196887|gb|AAM14821.1| TCP1-chaperonin cofactor A isolog [Arabidopsis thaliana] gi|20198325|gb|AAB63093.2| TCP1-chaperonin cofactor A isolog [Arabidopsis thaliana] gi|20259135|gb|AAM14283.1| putative TCP1-chaperonin cofactor A protein [Arabidopsis thaliana] gi|21553949|gb|AAM63030.1| TCP1-chaperonin cofactor A isolog [Arabidopsis thaliana] gi|330253289|gb|AEC08383.1| tubulin-specific chaperone A [Arabidopsis thaliana] gi|330253290|gb|AEC08384.1| tubulin-specific chaperone A [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 102/113 (90%), Gaps = 1/113 (0%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 111 MIPDCRKRLESALAELKAALTELEE-ENQEGQEIEDARSTIADVEKLFQTTEA 162
           MIPDC KRLESALA+LK+ L ELEE + +EG EIEDA+ T+ADVEK F T +A
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 113

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725067|ref|NP_001238615.1| uncharacterized protein LOC100500215 [Glycine max] gi|255629728|gb|ACU15213.1| unknown [Glycine max]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 102/110 (92%), Gaps = 1/110 (0%)

Query: 53  TVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMI 112
           TVR+LKIKTSTCKR+VKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMI
Sbjct: 4   TVRSLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMI 63

Query: 113 PDCRKRLESALAELKAALTELEEENQEGQ-EIEDARSTIADVEKLFQTTE 161
           PDCRKRLE+ALA+LK  L ELEE +++   EI++AR+TI +VEK+F+TTE
Sbjct: 64  PDCRKRLEAALADLKGLLAELEESDEKASPEIDEARNTIVEVEKVFETTE 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721102|ref|NP_001237966.1| uncharacterized protein LOC100527822 [Glycine max] gi|255633306|gb|ACU17010.1| unknown [Glycine max]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 103/112 (91%), Gaps = 1/112 (0%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MATVR+LKIKTSTCKR+VKELHSYEKEVEREAAKTADM EKGADP+DLKQQENVLAESRM
Sbjct: 1   MATVRSLKIKTSTCKRIVKELHSYEKEVEREAAKTADMTEKGADPHDLKQQENVLAESRM 60

Query: 111 MIPDCRKRLESALAELKAALTELEEENQEGQ-EIEDARSTIADVEKLFQTTE 161
           MIPDCRKRLE+ALA+LK  L ELEE +++   EI++A++TI +VEK+F+TTE
Sbjct: 61  MIPDCRKRLEAALADLKGILAELEESDEKASLEIDEAKNTIVEVEKVFETTE 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218191813|gb|EEC74240.1| hypothetical protein OsI_09440 [Oryza sativa Indica Group]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 100/112 (89%)

Query: 50  KMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESR 109
           +MAT+RNLKIKTSTCKR+VKEL SYEKEVE+EAAKTADMKEKGADPYDLKQQENVLAESR
Sbjct: 115 RMATLRNLKIKTSTCKRIVKELRSYEKEVEKEAAKTADMKEKGADPYDLKQQENVLAESR 174

Query: 110 MMIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQTTE 161
           MM+PDC KRLE+ALA+LKA L EL+E N++G EI +A STI +VE + + TE
Sbjct: 175 MMVPDCHKRLETALADLKATLAELKESNEQGAEIGEAESTITEVEAVVKPTE 226

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242063494|ref|XP_002453036.1| hypothetical protein SORBIDRAFT_04g037170 [Sorghum bicolor] gi|241932867|gb|EES06012.1| hypothetical protein SORBIDRAFT_04g037170 [Sorghum bicolor]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 100/111 (90%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR+VKEL SYEKEVE+EAAKTADMK+KGADPYDLKQQENVLAESRM
Sbjct: 1   MATLRNLKIKTSTCKRIVKELRSYEKEVEKEAAKTADMKDKGADPYDLKQQENVLAESRM 60

Query: 111 MIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQTTE 161
           M+PDC KRLE+ALA+LKA L EL+E N++G EI +A STIA+VE + + TE
Sbjct: 61  MVPDCHKRLETALADLKATLAELKESNEQGAEIGEAESTIAEVEAVVKPTE 111

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124008|ref|XP_002319219.1| tubulin folding cofactor [Populus trichocarpa] gi|118482709|gb|ABK93273.1| unknown [Populus trichocarpa] gi|222857595|gb|EEE95142.1| tubulin folding cofactor [Populus trichocarpa]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 103/112 (91%), Gaps = 1/112 (0%)

Query: 52  ATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMM 111
           +++RN KIKT++CKR+VKEL SYEKE+ERE AKTA+MK+KGADPYDLKQQENVLAESRMM
Sbjct: 4   SSLRNAKIKTNSCKRIVKELRSYEKEIEREVAKTAEMKDKGADPYDLKQQENVLAESRMM 63

Query: 112 IPDCRKRLESALAELKAALTELEEENQ-EGQEIEDARSTIADVEKLFQTTEA 162
           IPDCRKRLE+ALA+LKA L ELEE +Q EG EIEDAR+TIA+VE+LF TT+A
Sbjct: 64  IPDCRKRLEAALADLKAILAELEESDQKEGPEIEDARNTIAEVEQLFLTTDA 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47848185|dbj|BAD22012.1| putative tubulin folding cofactor A [Oryza sativa Japonica Group] gi|125541627|gb|EAY88022.1| hypothetical protein OsI_09445 [Oryza sativa Indica Group] gi|125584147|gb|EAZ25078.1| hypothetical protein OsJ_08871 [Oryza sativa Japonica Group]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 99/111 (89%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR+VKEL SYEKEVE+EAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATLRNLKIKTSTCKRIVKELRSYEKEVEKEAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 111 MIPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQTTE 161
           M+PDC KRLE+ALA+LKA L EL+E N++G EI +A STI +VE + + TE
Sbjct: 61  MVPDCHKRLETALADLKATLAELKESNEQGAEIGEAESTITEVEAVVKPTE 111

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2064367	113	KIS "KIESEL" [Arabidopsis thal	0.691	0.991	0.654	4.1e-33
UNIPROTKB|B4DT30	129	TBCA "Tubulin-specific chapero	0.401	0.503	0.492	9.1e-13
UNIPROTKB|O75347	108	TBCA "Tubulin-specific chapero	0.401	0.601	0.492	9.1e-13
UNIPROTKB|P48427	108	TBCA "Tubulin-specific chapero	0.401	0.601	0.492	2.4e-12
UNIPROTKB|P80585	108	TBCA "Tubulin-specific chapero	0.401	0.601	0.476	3.1e-12
RGD|1311538	108	Tbca "tubulin folding cofactor	0.401	0.601	0.492	3.1e-12
UNIPROTKB|Q6PEC1	108	Tbca "Tubulin-specific chapero	0.401	0.601	0.492	3.1e-12
UNIPROTKB|F1NVH2	108	TBCA "Tubulin-specific chapero	0.401	0.601	0.476	3.9e-12
MGI|MGI:107549	108	Tbca "tubulin cofactor A" [Mus	0.401	0.601	0.476	6.4e-12
RGD|2320668	222	LOC100361193 "tubulin cofactor	0.407	0.297	0.484	1.3e-11

TAIR|locus:2064367 KIS "KIESEL" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 74/113 (65%), Positives = 80/113 (70%)

Query:    51 MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
             MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct:     1 MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query:   111 MIPDCRKRXXXXXXXXXXXXXXXXXXXXXXX-XXXDARSTIADVEKLFQTTEA 162
             MIPDC KR                           DA+ T+ADVEK F T +A
Sbjct:    61 MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 113

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA;IGI;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|B4DT30 TBCA "Tubulin-specific chaperone A" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 32/65 (49%), Positives = 45/65 (69%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             VR +KIKT   KR+VKE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMMIP
Sbjct:     6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|O75347 TBCA "Tubulin-specific chaperone A" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 32/65 (49%), Positives = 45/65 (69%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             VR +KIKT   KR+VKE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMMIP
Sbjct:     6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0051087 "chaperone binding" evidence=TAS

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|P48427 TBCA "Tubulin-specific chaperone A" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 32/65 (49%), Positives = 44/65 (67%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             VR +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIP
Sbjct:     6 VRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005730 "nucleolus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

UNIPROTKB|P80585 TBCA "Tubulin-specific chaperone A" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             +R +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMMIP
Sbjct:     6 LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

RGD|1311538 Tbca "tubulin folding cofactor A" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/65 (49%), Positives = 44/65 (67%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             VR +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIP
Sbjct:     6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q6PEC1 Tbca "Tubulin-specific chaperone A" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/65 (49%), Positives = 44/65 (67%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             VR +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIP
Sbjct:     6 VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1NVH2 TBCA "Tubulin-specific chaperone A" [Gallus gallus (taxid:9031)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             +R +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMMIP
Sbjct:     6 LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQVEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:107549 Tbca "tubulin cofactor A" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:    54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
             VR +KIKT   +R+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMIP
Sbjct:     6 VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query:   114 DCRKR 118
             DC++R
Sbjct:    66 DCQRR 70

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

RGD|2320668 LOC100361193 "tubulin cofactor A" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query:    53 TVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMI 112
             T R +KIKT   KR+VKE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMMI
Sbjct:    36 TGRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMI 95

Query:   113 PDCRKR 118
             PDC+ R
Sbjct:    96 PDCQLR 101

GO:0005730 "nucleolus" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04350	TBCA_ARATH	No assigned EC number	0.8141	0.6913	0.9911	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019045001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_19, whole genome shotgun sequence); (113 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00008670001	SubName- Full=Chromosome chr10 scaffold_204, whole genome shotgun sequence; (141 aa)				•	•		•		0.685
	GSVIVG00033164001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (188 aa)				•	•				0.639
	GSVIVG00026393001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (1233 aa)						•	•		0.594
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•					0.559
	GSVIVG00007448001	SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (89 aa)				•	•				0.542
	GSVIVG00037864001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)				•			•		0.521
	GSVIVG00021594001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (80 aa)				•					0.442
	GSVIVG00031776001	hypothetical protein LOC100253870 (172 aa)				•					0.434
	GSVIVG00010306001	SubName- Full=Chromosome chr5 scaffold_253, whole genome shotgun sequence; (125 aa)				•			•		0.432
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•					0.428

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
pfam02970	91	pfam02970, TBCA, Tubulin binding cofactor A	2e-26

>gnl|CDD|217305 pfam02970, TBCA, Tubulin binding cofactor A

 Score = 95.4 bits (238), Expect = 2e-26
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query: 57  LKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCR 116
           LKIKT   KR++KE  SYEKEVE++  +   +K +GAD YDLK+QE VL E+ MM+PDC+
Sbjct: 2   LKIKTGVVKRLIKEEASYEKEVEQQEERVEKLKAEGADEYDLKKQEEVLKETEMMLPDCK 61

Query: 117 KRLESALAELKAALTELEEENQEGQEIEDA 146
           +RL+ A+A+L+  L E EE  +E +E ++A
Sbjct: 62  RRLQKAVADLEEYLEEYEEGLEELEEAKEA 91

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG3470	107	consensus Beta-tubulin folding cofactor A [Posttra	100.0
PF02970	90	TBCA: Tubulin binding cofactor A; InterPro: IPR004	99.97

>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-33  Score=212.91  Aligned_cols=101  Identities=48%  Similarity=0.744  Sum_probs=97.1

Q ss_pred             cccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 038806           54 VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTEL  133 (162)
Q Consensus        54 lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~  133 (162)
                      +|||+||||+||||+||+.||++|+.++++|+++|+++|.|+|+||+|++||+||.||||||++||++|++||++++.. 
T Consensus         5 vrqL~IKt~vvkRlvKE~~~Yekev~~eeakvakl~~dg~d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~~l~~-   83 (107)
T KOG3470|consen    5 VRQLVIKTGVVKRLVKEVEYYEKEVKEEEAKVAKLKDDGADPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLESILAD-   83 (107)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHhc-
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999999964 


Q ss_pred             hhcCCCchhHHHHHHHHHHHHH
Q 038806          134 EEENQEGQEIEDARSTIADVEK  155 (162)
Q Consensus       134 e~~~~~teEl~~Ake~L~~a~~  155 (162)
                      ++.+.++++|..|..+|.++..
T Consensus        84 ~~~~ee~~e~~~A~~~l~~~k~  105 (107)
T KOG3470|consen   84 EQYLEETPELKSANTYLDSAKA  105 (107)
T ss_pred             ccchhccHHHHHHHHHHHHHHh
Confidence            5678899999999999998875

>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT

Probab=99.97  E-value=7.5e-32  Score=197.39  Aligned_cols=90  Identities=51%  Similarity=0.764  Sum_probs=81.9

Q ss_pred             cchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 038806           56 NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTELEE  135 (162)
Q Consensus        56 qLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~e~  135 (162)
                      ||+||||+|+||+||+.||++|+.+|++++++|+++|+|+|+||+|.+||+||++|||||.+||.+|+.+|+++|.+++.
T Consensus         1 QLkIkt~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~   80 (90)
T PF02970_consen    1 QLKIKTGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG   80 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999987643


Q ss_pred             cCCCchhHHHH
Q 038806          136 ENQEGQEIEDA  146 (162)
Q Consensus       136 ~~~~teEl~~A  146 (162)
                       .++.+++.+|
T Consensus        81 -~ee~~~akeA   90 (90)
T PF02970_consen   81 -LEELEEAKEA   90 (90)
T ss_dssp             -CCCSHHHHHH
T ss_pred             -chhHHHHhhC
Confidence             4444444443

Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
3mxz_A	116	Crystal Structure Of Tubulin Folding Cofactor A Fro		6e-35
1h7c_A	108	Human Tubulin Chaperone Cofactor A Length = 108		3e-09
1qsd_A	106	Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofacto		2e-06

>pdb|3MXZ|A Chain A, Crystal Structure Of Tubulin Folding Cofactor A From Arabidopsis Thaliana Length = 116

Iteration: 1
 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 4   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 63
Query: 111 MIPDCRKRXXXXXXXXXXXXXXXXXXXXXXX-XXXDARSTIADVEKLFQTTEA 162
           MIPDC KR                           DA+ T+ADVEK F T +A
Sbjct: 64  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 116

>pdb|1H7C|A Chain A, Human Tubulin Chaperone Cofactor A Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           VR +KIKT   +R+VKE   YEKE +++  K    + +  + YD+K+Q  +L ESR  IP
Sbjct: 6   VRQIKIKTGVVRRLVKERVXYEKEAKQQEEKIEKXRAEDGENYDIKKQAEILQESRXXIP 65
Query: 114 DCRKR 118
           DC++R
Sbjct: 66  DCQRR 70

>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor Length = 106

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 56  NLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKE-KGADPYDLKQQENVLAESRMMIP 113
            L IK    KR+ KE   Y++E++ + A  A +KE K  DPYDLK+QE VL +++ ++P
Sbjct: 5   QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLP 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
3mxz_A	116	Tubulin-specific chaperone A; helix bundle; 1.60A	1e-28
1h7c_A	108	Tubulin-specific chaperone A; protein folding, cof	7e-28
1qsd_A	106	Protein (beta-tubulin binding post-chaperonin cofa	7e-27

>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana} Length = 116

 Score =  101 bits (252), Expect = 1e-28
 Identities = 92/113 (81%), Positives = 102/113 (90%), Gaps = 1/113 (0%)

Query: 51  MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 110
           MAT+RNLKIKTSTCKR+VKELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 4   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 63

Query: 111 MIPDCRKRLESALAELKAALTELEE-ENQEGQEIEDARSTIADVEKLFQTTEA 162
           MIPDC KRLESALA+LK+ L ELEE + +EG EIEDA+ T+ADVEK F T +A
Sbjct: 64  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 116

>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1 Length = 108

 Score = 99.1 bits (247), Expect = 7e-28
 Identities = 43/103 (41%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 52  ATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMM 111
             VR +KIKT   +R+VKE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM
Sbjct: 4   PRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMM 63

Query: 112 IPDCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVE 154
           IPDC++RLE+A  +L+  L E E++ +E +E ++AR  +  V+
Sbjct: 64  IPDCQRRLEAAYLDLQRIL-ENEKDLEEAEEYKEARLVLDSVK 105

>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1 Length = 106

 Score = 96.4 bits (240), Expect = 7e-27
 Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 5/104 (4%)

Query: 57  LKIKTSTCKRVVKELHSYEKEVEREAAKTADMK-EKGADPYDLKQQENVLAESRMMIPDC 115
           L IK    KR+ KE   Y++E++ + A  A +K +K  DPYDLK+QE VL +++ ++P  
Sbjct: 6   LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 65

Query: 116 RKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQT 159
            +++     +L+  L    +  Q  +++ DARS I   ++L  +
Sbjct: 66  YEKIREFKEDLEQFL----KTYQGTEDVSDARSAITSAQELLDS 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3mxz_A	116	Tubulin-specific chaperone A; helix bundle; 1.60A	100.0
1h7c_A	108	Tubulin-specific chaperone A; protein folding, cof	100.0
1qsd_A	106	Protein (beta-tubulin binding post-chaperonin cofa	100.0
4e81_A	219	Chaperone protein DNAK; chaperone; 1.90A {Escheric	89.32

>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-38  Score=242.12  Aligned_cols=113  Identities=81%  Similarity=1.141  Sum_probs=102.8

Q ss_pred             cccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 038806           50 KMATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAA  129 (162)
Q Consensus        50 ~~~~lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~  129 (162)
                      +||++|||+||||+|+||+||+.||++|+.+|++|+++|+++|+|+|+||||.+||+||++|||||++||.+|+.+|+++
T Consensus         3 ~~~~lrqLkIktg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~   82 (116)
T 3mxz_A            3 HMATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKST   82 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-hcCCCchhHHHHHHHHHHHHHHhhhhcC
Q 038806          130 LTELE-EENQEGQEIEDARSTIADVEKLFQTTEA  162 (162)
Q Consensus       130 l~e~e-~~~~~teEl~~Ake~L~~a~~~le~~~~  162 (162)
                      |.+++ .++.++++|.+|+++|.+|+.++++.+|
T Consensus        83 l~~~~~~~~~~~ee~~~Ak~~l~~ae~~~~~~~~  116 (116)
T 3mxz_A           83 LAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA  116 (116)
T ss_dssp             HHHHHTC-CCCCHHHHHHHHHHHHHHTC------
T ss_pred             HHHhcccCCCChHHHHHHHHHHHHHHHhccCCCC
Confidence            99875 3567899999999999999999998875

>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1

Probab=100.00  E-value=2.7e-36  Score=226.80  Aligned_cols=105  Identities=40%  Similarity=0.656  Sum_probs=99.1

Q ss_pred             ccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 038806           51 MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAAL  130 (162)
Q Consensus        51 ~~~lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l  130 (162)
                      +|++|||+||||+|+||+||+.||++|+.+|++||++|+++|.|+|+||+|++||+||++|||||.+||.+|+.+|+++|
T Consensus         3 d~~l~qLkIkt~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l   82 (108)
T 1h7c_A            3 DPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRIL   82 (108)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHHH
Q 038806          131 TELEEENQEGQEIEDARSTIADVEKL  156 (162)
Q Consensus       131 ~e~e~~~~~teEl~~Ake~L~~a~~~  156 (162)
                      .+ +++++++++|.+|+++|++|+..
T Consensus        83 ~~-e~~~~~~ee~~~Ake~l~~a~~~  107 (108)
T 1h7c_A           83 EN-EKDLEEAEEYKEARLVLDSVKLE  107 (108)
T ss_dssp             HH-CGGGTTSHHHHHHHHHHHHHHC-
T ss_pred             Hh-cccCCCcHHHHHHHHHHHHHHhc
Confidence            74 56778999999999999999854

>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1

Probab=100.00  E-value=4.6e-36  Score=225.11  Aligned_cols=104  Identities=34%  Similarity=0.562  Sum_probs=96.8

Q ss_pred             ccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 038806           51 MATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGA-DPYDLKQQENVLAESRMMIPDCRKRLESALAELKAA  129 (162)
Q Consensus        51 ~~~lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~-DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~  129 (162)
                      || +|||+||||||+||+||+.||++|+.+|++||++|+++|. |+|+||+|++||+||++|||||.+||.+|+.+|+++
T Consensus         1 ma-~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~   79 (106)
T 1qsd_A            1 MA-PTQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQF   79 (106)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            56 8999999999999999999999999999999999999988 999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHHHhhh
Q 038806          130 LTELEEENQEGQEIEDARSTIADVEKLFQT  159 (162)
Q Consensus       130 l~e~e~~~~~teEl~~Ake~L~~a~~~le~  159 (162)
                      |.    +++++++|.+|+++|++|+.++++
T Consensus        80 l~----~~~~~ee~~~Ake~l~~a~~~~~~  105 (106)
T 1qsd_A           80 LK----TYQGTEDVSDARSAITSAQELLDS  105 (106)
T ss_dssp             HH----TCCSSSCCHHHHHHHHHHHHHHHC
T ss_pred             HH----hccCcHHHHHHHHHHHHHHHhhcc
Confidence            93    566889999999999999998863

>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A

Probab=89.32  E-value=7.2  Score=31.17  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=54.4

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 038806           63 TCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM-MIPDCRKRLESALAELKAALTELEEENQEGQ  141 (162)
Q Consensus        63 vVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~-MIPD~~~RL~~A~~dL~~~l~e~e~~~~~te  141 (162)
                      -+.|+++|...|..|=.....+++..-+  .+. -|-..+..|++-.. +-++-+.+|..++.+++++|...     +.+
T Consensus       123 eI~~m~~~a~~~~~eD~~~r~~~e~kn~--le~-~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~-----~~~  194 (219)
T 4e81_A          123 EIQKMVRDAEANAEADRKFEELVQTRNQ--GDH-LLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE-----DKA  194 (219)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS-----CHH
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHH--HHH-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC-----CHH
Confidence            3788888888887766666655554332  222 22233344445443 44778889999999999999632     567


Q ss_pred             hHHHHHHHHHHH
Q 038806          142 EIEDARSTIADV  153 (162)
Q Consensus       142 El~~Ake~L~~a  153 (162)
                      +|..+.+-|+.+
T Consensus       195 ~i~~~~~~L~~~  206 (219)
T 4e81_A          195 AIEAKMQELAQV  206 (219)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888887777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1h7ca_	103	a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (	3e-30
d1qsda_	102	a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's	3e-28

>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 3e-30
 Identities = 42/101 (41%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 54  VRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIP 113
           VR +KIKT   +R+VKE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMMIP
Sbjct: 3   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 62

Query: 114 DCRKRLESALAELKAALTELEEENQEGQEIEDARSTIADVE 154
           DC++RLE+A  +L+  L   E++ +E +E ++AR  +  V+
Sbjct: 63  DCQRRLEAAYLDLQRILEN-EKDLEEAEEYKEARLVLDSVK 102

>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]} Length = 102

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]

 Score = 98.6 bits (246), Expect = 3e-28
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 57  LKIKTSTCKRVVKELHSYEKEVEREAAKTADMK-EKGADPYDLKQQENVLAESRMMIPDC 115
           L IK    KR+ KE   Y++E++ + A  A +K +K  DPYDLK+QE VL +++ ++P  
Sbjct: 3   LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 62

Query: 116 RKRLESALAELKAALTELEEENQEGQEIEDARSTIADVEKLFQT 159
            +++     +L+  L   +      +++ DARS I   ++L  +
Sbjct: 63  YEKIREFKEDLEQFLKTYQGT----EDVSDARSAITSAQELLDS 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1h7ca_	103	Tubulin chaperone cofactor A {Human (Homo sapiens)	100.0
d1qsda_	102	Tubulin chaperone cofactor A {Baker's yeast (Sacch	100.0
d1dkza1	97	DnaK {Escherichia coli [TaxId: 562]}	80.31

>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=231.06  Aligned_cols=102  Identities=41%  Similarity=0.701  Sum_probs=98.5

Q ss_pred             cccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 038806           52 ATVRNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALT  131 (162)
Q Consensus        52 ~~lrqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~  131 (162)
                      |++|||+||||||+||+||+.+|++|+.+|++|+++|+++|+|+|+||+|++||+||+||||||.+||.+|+.+|+.+|+
T Consensus         1 prlrqLkIktgvvkRL~KE~~~Y~kE~~~q~~k~ek~k~~~~dey~iKkq~~vl~Es~~mipd~~~Rl~~a~~~L~~~l~   80 (103)
T d1h7ca_           1 PRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE   80 (103)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHH
Q 038806          132 ELEEENQEGQEIEDARSTIADVE  154 (162)
Q Consensus       132 e~e~~~~~teEl~~Ake~L~~a~  154 (162)
                      + ++++++++||.+|+++|++|+
T Consensus        81 ~-e~~~~~~ee~~~A~~~l~~ak  102 (103)
T d1h7ca_          81 N-EKDLEEAEEYKEARLVLDSVK  102 (103)
T ss_dssp             H-CGGGTTSHHHHHHHHHHHHHH
T ss_pred             H-CCCcCchHHHHHHHHHHHhhc
Confidence            5 567889999999999999986

>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]

Probab=100.00  E-value=1.4e-35  Score=219.81  Aligned_cols=101  Identities=33%  Similarity=0.569  Sum_probs=95.1

Q ss_pred             ccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhhHhHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 038806           55 RNLKIKTSTCKRVVKELHSYEKEVEREAAKTADMKEK-GADPYDLKQQENVLAESRMMIPDCRKRLESALAELKAALTEL  133 (162)
Q Consensus        55 rqLkIKTgvVKRL~KE~~~Y~kE~~eq~~kvekmKae-g~DeydIKkQ~eVLeET~~MIPD~~~RL~~A~~dL~~~l~e~  133 (162)
                      .||+||||||+||+||+.||++|+.+|++|+++|+++ |+|+|+||||++||+||+||||||++||..|+.+|+++|.++
T Consensus         1 ~QLkIktg~vkRL~KE~~~Y~kE~~~q~~kv~k~kad~~~dey~iKkq~evL~Es~~mipd~~~RL~~a~~~L~~~l~~~   80 (102)
T d1qsda_           1 TQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTY   80 (102)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc
Confidence            4899999999999999999999999999999999976 899999999999999999999999999999999999999653


Q ss_pred             hhcCCCchhHHHHHHHHHHHHHHhhh
Q 038806          134 EEENQEGQEIEDARSTIADVEKLFQT  159 (162)
Q Consensus       134 e~~~~~teEl~~Ake~L~~a~~~le~  159 (162)
                          .+++++.+|+++|.+++.+|++
T Consensus        81 ----~~~ee~~~akeal~~ak~~l~s  102 (102)
T d1qsda_          81 ----QGTEDVSDARSAITSAQELLDS  102 (102)
T ss_dssp             ----CSSSCCHHHHHHHHHHHHHHHC
T ss_pred             ----CCchHHHHHHHHHHHHHHHhhC
Confidence                4678999999999999999874

>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: immunoglobulin/albumin-binding domain-like
superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain
family: Heat shock protein 70kD (HSP70), C-terminal subdomain
domain: DnaK
species: Escherichia coli [TaxId: 562]

Probab=80.31  E-value=5.8  Score=25.97  Aligned_cols=84  Identities=18%  Similarity=0.225  Sum_probs=58.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHhHHHHHHHH-hhhchhHHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 038806           64 CKRVVKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAES-RMMIPDCRKRLESALAELKAALTELEEENQEGQE  142 (162)
Q Consensus        64 VKRL~KE~~~Y~kE~~eq~~kvekmKaeg~DeydIKkQ~eVLeET-~~MIPD~~~RL~~A~~dL~~~l~e~e~~~~~teE  142 (162)
                      |.|+++|=.-|..|=......++..-.-..=.|.++++-   .+. ..+=++-+.+|..++.+|+.++..     .+.+.
T Consensus         6 IerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l---~e~~~~l~~~~k~~i~~~i~~l~~~l~~-----~d~~~   77 (97)
T d1dkza1           6 IQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV---EEAGDKLPADDKTAIESALTALETALKG-----EDKAA   77 (97)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHGGGSCHHHHHHHHHHHHHHHHHHTS-----SCHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccCCHHHHHHHHHHHHHHHHHHhc-----CCHHH
Confidence            689999999999888777777765443223345555544   444 335567788899999999999852     25567


Q ss_pred             HHHHHHHHHHHHH
Q 038806          143 IEDARSTIADVEK  155 (162)
Q Consensus       143 l~~Ake~L~~a~~  155 (162)
                      +..+...|+.+-.
T Consensus        78 i~~~~~~L~~~~~   90 (97)
T d1dkza1          78 IEAKMQELAQVSQ   90 (97)
T ss_dssp             HHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHH
Confidence            7788777766543