Citrus Sinensis ID: 038895

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
KLTADAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGSYTPASTEDYA
ccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHccccccccccccc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHcc
kltadaaldpAGLVAVAVAHALALFVGVAIAAnisgghlnpAVTLGlavggnitILTGIFYWIAQCLGSIVACLLLQFVtsglsipthavgagLNAAEGLVMEIVITFALVYTVYataadpkkgplgtiapiAIGFIVGAnilaagpfsggsmnparsfgpavvsgdfsqiWIYWVgpliggglaglvygdifigsytpastedya
kltadaaldpAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGsytpastedya
KLTADAALDPaglvavavahalalfvgvaIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGSYTPASTEDYA
********DPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGSYT********
********DPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFI************
KLTADAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGSYTPASTEDYA
*****AALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGSYT*AST****
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KLTADAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGSYTPASTEDYA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query206 2.2.26 [Sep-21-2011]
Q9FGL2250 Aquaporin TIP2-3 OS=Arabi yes no 0.990 0.816 0.843 3e-95
Q41975250 Probable aquaporin TIP2-2 no no 0.995 0.82 0.878 2e-90
P21653250 Probable aquaporin TIP-ty N/A no 1.0 0.824 0.859 7e-88
P24422250 Probable aquaporin TIP-ty N/A no 1.0 0.824 0.859 8e-88
P33560250 Probable aquaporin TIP-ty N/A no 1.0 0.824 0.835 6e-87
Q9ATL8250 Aquaporin TIP2-2 OS=Zea m N/A no 1.0 0.824 0.782 6e-86
Q84RL6248 Aquaporin TIP2-3 OS=Zea m N/A no 0.990 0.822 0.770 1e-85
Q41951250 Aquaporin TIP2-1 OS=Arabi no no 0.995 0.82 0.748 4e-84
Q7XA61248 Probable aquaporin TIP2-1 no no 0.995 0.826 0.805 2e-83
Q9ATL9249 Aquaporin TIP2-1 OS=Zea m N/A no 0.995 0.823 0.792 5e-81
>sp|Q9FGL2|TIP23_ARATH Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1 Back     alignment and function desciption
 Score =  347 bits (891), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 172/204 (84%), Positives = 187/204 (91%)

Query: 1   KLTADAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIF 60
           KLT+D ALDPAGLVA+A+AHA ALFVGV+IAANISGGHLNPAVTLGLA+GGNIT++TG F
Sbjct: 44  KLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFF 103

Query: 61  YWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAAD 120
           YWIAQCLGSIVACLLL FVT+G S+PTH V AGL A EG+VMEIV+TFALVYTVYATAAD
Sbjct: 104 YWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAAD 163

Query: 121 PKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLI 180
           PKKG LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD SQIWIYWVGPL+
Sbjct: 164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLV 223

Query: 181 GGGLAGLVYGDIFIGSYTPASTED 204
           GG LAGL+YGD+FIGSY    T +
Sbjct: 224 GGALAGLIYGDVFIGSYEAVETRE 247
Transports methylammonium or ammonium in yeast cells, preferentially at high medium pH. May participate in vacuolar compartmentation and detoxification of ammonium.
Arabidopsis thaliana (taxid: 3702)
>sp|Q41975|TIP22_ARATH Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2 Back     alignment and function description
>sp|P21653|TIP1_TOBAC Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P24422|TIP2_TOBAC Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2 Back     alignment and function description
>sp|P33560|TIP_ANTMA Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1 Back     alignment and function description
>sp|Q9ATL8|TIP22_MAIZE Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q84RL6|TIP23_MAIZE Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2 Back     alignment and function description
>sp|Q41951|TIP21_ARATH Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q7XA61|TIP21_ORYSJ Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATL9|TIP21_MAIZE Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
1518057250 membrane channel protein [Solanum tubero 1.0 0.824 0.855 2e-94
15238100250 aquaporin TIP2-3 [Arabidopsis thaliana] 0.990 0.816 0.843 1e-93
89257520250 tonoplast intrinsic protein, putative [B 0.990 0.816 0.852 2e-93
297790919250 AtTIP2_3 [Arabidopsis lyrata subsp. lyra 0.990 0.816 0.838 8e-93
2058706250 Rb7 [Solanum lycopersicum] 1.0 0.824 0.845 1e-92
1794147248 unnamed protein product [Daucus carota] 0.995 0.826 0.859 1e-92
110738557250 membrane channel protein-like [Arabidops 0.990 0.816 0.838 2e-92
53748455234 aquaporin 1 [Plantago major] 0.995 0.876 0.836 6e-92
1212921250 aquaporin [Helianthus annuus] 1.0 0.824 0.821 2e-91
357136874249 PREDICTED: aquaporin TIP2-2-like [Brachy 1.0 0.827 0.830 7e-91
>gi|1518057|gb|AAB67881.1| membrane channel protein [Solanum tuberosum] Back     alignment and taxonomy information
 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/207 (85%), Positives = 194/207 (93%), Gaps = 1/207 (0%)

Query: 1   KLTADAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIF 60
           KLT+DAALDPAGLVA+AVAHA ALFVGV++AANISGGHLNPAVTLGLAVGGNIT LTG+F
Sbjct: 44  KLTSDAALDPAGLVAIAVAHAFALFVGVSMAANISGGHLNPAVTLGLAVGGNITTLTGLF 103

Query: 61  YWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAAD 120
           YW+AQ LGS VACLLL++VT+GL++PTH V AG+N AEG+VMEIVITFALVYTVYATAAD
Sbjct: 104 YWVAQLLGSTVACLLLKYVTNGLAVPTHGVAAGMNGAEGVVMEIVITFALVYTVYATAAD 163

Query: 121 PKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLI 180
           PKKG LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV+GDFSQ WIYWVGPLI
Sbjct: 164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWVGPLI 223

Query: 181 GGGLAGLVYGDIFIGSYTPAST-EDYA 206
           GGGLAG +YGD+FIGS+TP  T EDYA
Sbjct: 224 GGGLAGFIYGDVFIGSHTPLPTSEDYA 250

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15238100|ref|NP_199556.1| aquaporin TIP2-3 [Arabidopsis thaliana] gi|32363406|sp|Q9FGL2.1|TIP23_ARATH RecName: Full=Aquaporin TIP2-3; AltName: Full=Tonoplast intrinsic protein 2-3; Short=AtTIP2;3 gi|9758773|dbj|BAB09071.1| membrane channel protein-like; aquaporin (tonoplast intrinsic protein)-like [Arabidopsis thaliana] gi|40822901|gb|AAR92248.1| At5g47450 [Arabidopsis thaliana] gi|44681458|gb|AAS47669.1| At5g47450 [Arabidopsis thaliana] gi|332008131|gb|AED95514.1| aquaporin TIP2-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|89257520|gb|ABD65010.1| tonoplast intrinsic protein, putative [Brassica oleracea] Back     alignment and taxonomy information
>gi|297790919|ref|XP_002863344.1| AtTIP2_3 [Arabidopsis lyrata subsp. lyrata] gi|297309179|gb|EFH39603.1| AtTIP2_3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|2058706|gb|AAB53329.1| Rb7 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|1794147|dbj|BAA19129.1| unnamed protein product [Daucus carota] Back     alignment and taxonomy information
>gi|110738557|dbj|BAF01204.1| membrane channel protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|53748455|emb|CAH59430.1| aquaporin 1 [Plantago major] Back     alignment and taxonomy information
>gi|1212921|emb|CAA65187.1| aquaporin [Helianthus annuus] Back     alignment and taxonomy information
>gi|357136874|ref|XP_003570028.1| PREDICTED: aquaporin TIP2-2-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.995 0.82 0.796 6.2e-85
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.990 0.816 0.769 2.8e-82
TAIR|locus:2094977250 DELTA-TIP "delta tonoplast int 0.995 0.82 0.685 1.9e-74
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 0.995 0.816 0.572 6.4e-60
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 0.995 0.810 0.570 4.5e-59
TAIR|locus:2116987252 TIP1;3 "tonoplast intrinsic pr 0.995 0.813 0.521 7e-54
TAIR|locus:2043505249 TIP4;1 "tonoplast intrinsic pr 0.844 0.698 0.542 3.5e-52
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.805 0.621 0.578 1.7e-50
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.820 0.630 0.573 4.6e-50
TAIR|locus:2099595256 TIP5;1 "tonoplast intrinsic pr 0.791 0.636 0.493 3.6e-41
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 164/206 (79%), Positives = 175/206 (84%)

Query:     1 KLTADAALDPXXXXXXXXXXXXXXXXXXXIAANISGGHLNPAVTLGLAVGGNITILTGIF 60
             KLT+DAALDP                   IAANISGGHLNPAVTLGLAVGGNIT++TG F
Sbjct:    44 KLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFF 103

Query:    61 YWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAAD 120
             YWIAQCLGSIVACLLL FVT+G S+PTH V AGL A EG+VMEIV+TFALVYTVYATAAD
Sbjct:   104 YWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAAD 163

Query:   121 PKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLI 180
             PKKG LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPL+
Sbjct:   164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLV 223

Query:   181 GGGLAGLVYGDIFIGSYTPA-STEDY 205
             GG LAGL+YGD+FIGSY PA +TE Y
Sbjct:   224 GGALAGLIYGDVFIGSYAPAPTTESY 249
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0042807 "central vacuole" evidence=IDA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P33560TIP_ANTMANo assigned EC number0.83571.00.824N/Ano
P24422TIP2_TOBACNo assigned EC number0.85991.00.824N/Ano
P42067TIP1_MEDSANo assigned EC number0.63100.98540.8152N/Ano
Q9FGL2TIP23_ARATHNo assigned EC number0.84310.99020.816yesno
Q84RL6TIP23_MAIZENo assigned EC number0.77070.99020.8225N/Ano
Q5Z6F0TIP22_ORYSJNo assigned EC number0.71840.98540.8185nono
Q9FY14TIP1_MEDTRNo assigned EC number0.64070.99020.816N/Ano
Q7XA61TIP21_ORYSJNo assigned EC number0.80580.99510.8266nono
Q9ATL9TIP21_MAIZENo assigned EC number0.79220.99510.8232N/Ano
Q9ATL8TIP22_MAIZENo assigned EC number0.78261.00.824N/Ano
P21653TIP1_TOBACNo assigned EC number0.85991.00.824N/Ano
Q41951TIP21_ARATHNo assigned EC number0.74870.99510.82nono
Q9ATM0TIP12_MAIZENo assigned EC number0.60760.99510.8070N/Ano
Q41975TIP22_ARATHNo assigned EC number0.87860.99510.82nono
O64964TIP11_MAIZENo assigned EC number0.62620.99020.816N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-107
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 6e-88
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-68
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 3e-65
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-55
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-46
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 5e-30
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 3e-27
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 3e-25
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 4e-25
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-24
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-24
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 3e-13
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information 
 Score =  308 bits (789), Expect = e-107
 Identities = 178/204 (87%), Positives = 190/204 (93%)

Query: 1   KLTADAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIF 60
           KLT+DAALDPAGLVAVAVAHA ALFVGV+IAANISGGHLNPAVTLGLA+GGNITI+TG F
Sbjct: 44  KLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITIITGFF 103

Query: 61  YWIAQCLGSIVACLLLQFVTSGLSIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAAD 120
           YWIAQCLGSIVACLLL FVT+G S+PTH V AGL A EG+VMEIV+TFALVYTVYATAAD
Sbjct: 104 YWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAAD 163

Query: 121 PKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLI 180
           PKKG LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPL+
Sbjct: 164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLV 223

Query: 181 GGGLAGLVYGDIFIGSYTPASTED 204
           GG LAGL+YGD+FIGSY  A T +
Sbjct: 224 GGALAGLIYGDVFIGSYAAAPTSE 247

Length = 250
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 206
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00184 296 aquaporin NIP1; Provisional 99.67
PLN00026 298 aquaporin NIP; Provisional 99.67
PLN00167 256 aquaporin TIP5; Provisional 99.61
PLN00183 274 putative aquaporin NIP7; Provisional 99.59
PLN00166 250 aquaporin TIP2; Provisional 99.57
PLN00182 283 putative aquaporin NIP4; Provisional 99.56
PTZ00016 294 aquaglyceroporin; Provisional 99.54
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.53
PRK05420 231 aquaporin Z; Provisional 99.53
PLN00027 252 aquaporin TIP; Provisional 99.53
TIGR00861 216 MIP MIP family channel proteins. processes. Some m 99.45
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.39
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.38
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.33
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.28
PRK11562268 nitrite transporter NirC; Provisional 87.33
COG2116265 FocA Formate/nitrite family of transporters [Inorg 83.06
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.9e-49  Score=318.97  Aligned_cols=194  Identities=52%  Similarity=0.915  Sum_probs=177.9

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Q 038895            7 ALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL---   83 (206)
Q Consensus         7 ~~~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---   83 (206)
                      ..++.+++.+++++|+++++.+++++++||||+|||||+++++.||+++.+++.|+.+|++|+++|+.+++.+.+.+   
T Consensus        38 ~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~  117 (238)
T KOG0223|consen   38 YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNR  117 (238)
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCccccc
Confidence            46777899999999999999999999999999999999999999999999999999999999999999999998874   


Q ss_pred             -CCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHH
Q 038895           84 -SIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPA  162 (206)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~  162 (206)
                       ......+.++.+..|+++.|++.||.|+++++.+.+|+|+.   .+.|+.+|+.+...+++.+++||++|||||+|+|+
T Consensus       118 ~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpA  194 (238)
T KOG0223|consen  118 KGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPA  194 (238)
T ss_pred             CCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHH
Confidence             34455677889999999999999999999999877888764   78999999999999999999999999999999999


Q ss_pred             HhhcCCCceeecchhhhHHHHHHHHHHHHHhcCC-CCCCCCC
Q 038895          163 VVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGS-YTPASTE  203 (206)
Q Consensus       163 ~~~~~~~~~~vy~i~p~~Ga~~a~~l~~~l~~~~-~~~~~~~  203 (206)
                      +..++|+++|+||++|++|+++++++||.++.+. ++++++.
T Consensus       195 vv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~~~~~~  236 (238)
T KOG0223|consen  195 VVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESEPTKSA  236 (238)
T ss_pred             HHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCccccccCcc
Confidence            9999999999999999999999999999999855 4444433

>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-33
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 3e-33
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-32
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-32
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 4e-32
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 6e-31
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-25
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 3e-25
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 4e-25
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 4e-25
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-24
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-24
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-24
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-23
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-23
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 6e-23
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 3e-14
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-12
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 1e-12
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 1e-12
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-12
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 1e-12
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 3e-12
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 3e-12
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 5e-12
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-09
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 2e-09
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-09
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-09
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 8/166 (4%)
Query: 33  NISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVT-----SGLSIPT 87
           +ISGGH+NPAVT+ +     I+I   +FY  AQCLG+I+   +L  VT      GL + T
Sbjct: 107 HISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT 166
Query: 88  HAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGP 147
             V   L A  GL++E++ITF LV+T++A+  D +    G++A +AIGF V    L A  
Sbjct: 167 --VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAIN 223
Query: 148 FSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIF 193
           ++G SMNPARSFGPAV+ G++   WIYWVGP+IG  LAG +Y  +F
Sbjct: 224 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-77
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-76
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-04
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 5e-76
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 3e-74
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 6e-74
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 9e-73
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-04
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-72
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 5e-72
2o9g_A234 Aquaporin Z; integral membrane protein, structural 4e-65
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 9e-65
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-57
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 6e-40
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-39
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  234 bits (599), Expect = 2e-77
 Identities = 77/195 (39%), Positives = 112/195 (57%), Gaps = 4/195 (2%)

Query: 10  PAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGS 69
           P  +V +++   L++   V    +ISGGH+NPAVT+ +     I+I   +FY  AQCLG+
Sbjct: 84  PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGA 143

Query: 70  IVACLLLQFVTSGLSIP---THAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPL 126
           I+   +L  VT    +       V   L A  GL++E++ITF LV+T++A+  D K+  +
Sbjct: 144 IIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDV 202

Query: 127 GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAG 186
                +AIGF V    L A  ++G SMNPARSFGPAV+ G++   WIYWVGP+IG  LAG
Sbjct: 203 TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAG 262

Query: 187 LVYGDIFIGSYTPAS 201
            +Y  +F        
Sbjct: 263 ALYEYVFCPDVELKR 277
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.58
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.49
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.48
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.47
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.45
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.45
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.44
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.43
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.43
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.42
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.42
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 99.41
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.39
3tds_E268 Formate/nitrite transporter; membrane protein; HET 85.62
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-49  Score=322.85  Aligned_cols=189  Identities=41%  Similarity=0.723  Sum_probs=169.2

Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 038895            5 DAALDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGL-   83 (206)
Q Consensus         5 ~~~~~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~-   83 (206)
                      +++.++.+++.++++||+++++.+++++++||||+|||||+++++.||++|+|++.|+++|++|+++|+.+++.++++. 
T Consensus        31 ~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~  110 (223)
T 3gd8_A           31 TEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV  110 (223)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            4456678899999999999999999999999999999999999999999999999999999999999999999987642 


Q ss_pred             --CCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHH
Q 038895           84 --SIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGP  161 (206)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~  161 (206)
                        ....+++.++.+..++++.|+++|++|+++++.. .|+|+...+...|+.+|+.+.......+++||++|||||||+|
T Consensus       111 ~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~-~~~~~~~~~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP  189 (223)
T 3gd8_A          111 VGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFAS-CDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGP  189 (223)
T ss_dssp             HTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-TCTTCSCCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             ccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHH-hccccCCccCCccHHHHHHHHHHHHhccCCccccccHHHHHHH
Confidence              2344566677889999999999999999999984 6666544356789999999887777777889999999999999


Q ss_pred             HHhhcCCCceeecchhhhHHHHHHHHHHHHHhc
Q 038895          162 AVVSGDFSQIWIYWVGPLIGGGLAGLVYGDIFI  194 (206)
Q Consensus       162 ~~~~~~~~~~~vy~i~p~~Ga~~a~~l~~~l~~  194 (206)
                      |++.++|+++|+||++|++|+++++++|++++.
T Consensus       190 ~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~  222 (223)
T 3gd8_A          190 AVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFC  222 (223)
T ss_dssp             HHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999874
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 206
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-33
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-31
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 8e-23
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-22
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  118 bits (296), Expect = 2e-33
 Identities = 81/194 (41%), Positives = 115/194 (59%), Gaps = 4/194 (2%)

Query: 11  AGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSI 70
              V V++A  L++        +ISG HLNPAVTLGL +   I++L  I Y IAQC+G+I
Sbjct: 49  QDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAI 108

Query: 71  VACLLLQFVTSGL---SIPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLG 127
           VA  +L  +TS L   S+  +A+  G+N+ +GL +EI+ T  LV  V AT  D ++  LG
Sbjct: 109 VATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLG 167

Query: 128 TIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGL 187
              P+AIGF V    L A  ++G  +NPARSFG +V++ +F   WI+WVGP IG  LA L
Sbjct: 168 GSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVL 227

Query: 188 VYGDIFIGSYTPAS 201
           +Y  I     +  +
Sbjct: 228 IYDFILAPRSSDLT 241
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.57
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.45
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.38
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.34
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-47  Score=308.37  Aligned_cols=192  Identities=33%  Similarity=0.617  Sum_probs=170.6

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---
Q 038895            8 LDPAGLVAVAVAHALALFVGVAIAANISGGHLNPAVTLGLAVGGNITILTGIFYWIAQCLGSIVACLLLQFVTSGLS---   84 (206)
Q Consensus         8 ~~~~~~l~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~---   84 (206)
                      .+..+.+.++++||++++.++++++++||||+|||||+++++.||+++++++.|+++|++||++|+.+++.++++..   
T Consensus        31 ~~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~  110 (234)
T d1ymga1          31 PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGN  110 (234)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTT
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChhheeeeeehHHHHHHHHHHHHHHHcCcccccc
Confidence            34456889999999999999999999999999999999999999999999999999999999999999999987653   


Q ss_pred             CcccccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCccChhhhHHHHHh
Q 038895           85 IPTHAVGAGLNAAEGLVMEIVITFALVYTVYATAADPKKGPLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV  164 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~l~~~~~  164 (206)
                      .....+.++.+..++++.|++.|++++++++.. .|+++.......++.+|+.+.+.....+++||+++||||||+|+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~-~~~~~~~~~~~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~  189 (234)
T d1ymga1         111 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL  189 (234)
T ss_dssp             TTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTSCSCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             ccccccCccchhhHHHHHHHHHHHHHHHhheee-ecCCccCcCcceeEeehHHHHHHHHHhcccccccccchhhhhHHHh
Confidence            223445677889999999999999999999985 5655554456789999999999999999999999999999999999


Q ss_pred             hcCCCceeecchhhhHHHHHHHHHHHHHhcCCCCCC
Q 038895          165 SGDFSQIWIYWVGPLIGGGLAGLVYGDIFIGSYTPA  200 (206)
Q Consensus       165 ~~~~~~~~vy~i~p~~Ga~~a~~l~~~l~~~~~~~~  200 (206)
                      .++|+++|+||++|++|+++|+.+|++++.++.+..
T Consensus       190 ~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~  225 (234)
T d1ymga1         190 TRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSV  225 (234)
T ss_dssp             HTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCH
T ss_pred             ccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcch
Confidence            999999999999999999999999999987554433
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure