Citrus Sinensis ID: 038899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MWRHRRLLSSFTAFTFLFFVLTQLGTGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccHHHcccccccccEEEEccccccccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mwrhrrllssfTAFTFLFFVLTqlgtggaqeketrvldqkrisgpgsspptcrskcgrcspckpvhvpiqpglsmpleyypeawrcncgnklfmp
Flexible Loop (DISEMBL)
mwrhrrllssftaFTFLFFVLTQLgtggaqeketrvldqkrisgpgsspptcrskCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP
Low Complexity Region (SEG)
MWRHRRllssftaftflffvltqlgtggAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP
Disordered region (IsUnstruct)
*****RLLSSFTAFTFLFFVLTQLGTG****************************CGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLF**
Disordered Region (DISOPRED)
*****RLLSSFTAFTFLFFV*******************************CRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFM*
Disordered Region (DISEMBL)
MWRHRRLLSSFTAFTFLFFVLTQLGTGGAQEKETRVLDQK*****************RCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP
Disordered Region (DISPRO)
MWRHRRLLSSFTAFTFLFFVLTQLGT******************PGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLF**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWRHRRLLSSFTAFTFLFFVLTQLGTGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q2V3I3	109	EPIDERMAL PATTERNING FACT	yes	no	0.631	0.550	0.85	2e-25
Q9LUH9	107	EPIDERMAL PATTERNING FACT	no	no	0.642	0.570	0.786	3e-24
Q1PEY6	156	EPIDERMAL PATTERNING FACT	no	no	0.789	0.480	0.558	8e-19
Q9FY19	507	Polygalacturonase OS=Juni	N/A	no	0.673	0.126	0.409	2e-11
Q7M1E7	514	Polygalacturonase OS=Cham	N/A	no	0.673	0.124	0.36	8e-10
P43212	514	Polygalacturonase OS=Cryp	N/A	no	0.505	0.093	0.46	5e-07
Q1G3V9	99	EPIDERMAL PATTERNING FACT	no	no	0.789	0.757	0.337	0.0002

>sp|Q2V3I3|EPFL4_ARATH EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=3 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 53/60 (88%)

Query: 36  VLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           +   KR  GPGSSPPTCRSKCG+C PCKPVHVPIQPGLSMPLEYYPEAWRC CGNKLFMP
Sbjct: 50  IRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

Controls stomatal patterning. Mediates stomatal development inhibition.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH9|EPFL5_ARATH EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana GN=EPFL5 PE=3 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 53/61 (86%)

Query: 35  RVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFM 94
           +++DQKR+ GPGS PP CR KCG+C PCK VHVPIQPGL MPLEYYPEAWRC CGNKLFM
Sbjct: 47  QIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFM 106

Query: 95  P 95
           P
Sbjct: 107 P 107

Controls stomatal patterning. Mediates stomatal development inhibition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEY6|EPFL6_ARATH EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana GN=EPFL6 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 54/77 (70%), Gaps = 2/77 (2%)

Query: 19  FVLTQLGTGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLE 78
            V+ +    G + KE  +  ++ + G GSSPP C SKCGRC+PCKPVHVP+ PG  +  E
Sbjct: 82  VVIKKTRKIGDRSKEAEL--RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAE 139

Query: 79  YYPEAWRCNCGNKLFMP 95
           YYPEAWRC CGNKL+MP
Sbjct: 140 YYPEAWRCKCGNKLYMP 156

Controls stomatal patterning.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 30  QEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCG 89
           Q+  T ++D+K  +   SSPP C++KC  C PCKP  + + P  + P +YYP+ W C+C 
Sbjct: 444 QKPTTLLMDEKMGASLNSSPPNCKNKCKGCQPCKPKLIIVHP--NQPEDYYPQRWVCSCH 501

Query: 90  NKLFMP 95
           NK++ P
Sbjct: 502 NKIYNP 507

Juniperus ashei (taxid: 13101)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 11/75 (14%)

Query: 30  QEKETRVLDQKRIS---------GPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYY 80
           Q++ T V+D+ + +            SSPP C++KC  C PCKP  + + P  + P +YY
Sbjct: 442 QQQPTTVMDENKGACAKGDSTCISLSSSPPNCKNKCKGCQPCKPKLIIVHP--NKPQDYY 499

Query: 81  PEAWRCNCGNKLFMP 95
           P+ W C+C NK++ P
Sbjct: 500 PQKWVCSCHNKIYNP 514

Chamaecyparis obtusa (taxid: 13415)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 46  GSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           GS PP C +KC  CSPCK   V +     MP EYYP+ W C+   K++ P
Sbjct: 467 GSRPPNCTNKCHGCSPCKAKLVIVHR--IMPQEYYPQRWMCSRHGKIYHP 514

Cryptomeria japonica (taxid: 3369)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q1G3V9|EPFL8_ARATH EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana GN=EPFL8 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 17 LFFVLTQLG-TGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSM 75
          +FF L  L    GA   + R+    + S  GS PP C +KC  C PC P    I+     
Sbjct: 21 IFFSLLSLHCISGAHGHQQRM----KESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDD 76

Query: 76 PLE---YYPEAWRCNCGNKLFMP 95
            +   YYP  W C C +++F P
Sbjct: 77 DDDSEPYYPVKWICRCRDRVFEP 99

Controls stomatal patterning.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
255552055	118	conserved hypothetical protein [Ricinus	0.978	0.788	0.666	3e-32
224107949	117	predicted protein [Populus trichocarpa]	1.0	0.811	0.591	1e-27
297737105	145	unnamed protein product [Vitis vinifera]	0.821	0.537	0.681	1e-25
224102109	116	predicted protein [Populus trichocarpa]	0.8	0.655	0.659	2e-25
79325113	109	epidermal patterning factor-like protein	0.631	0.550	0.85	8e-24
356535972	122	PREDICTED: EPIDERMAL PATTERNING FACTOR-l	0.947	0.737	0.568	1e-23
297804814	110	hypothetical protein ARALYDRAFT_493427 [	0.631	0.545	0.85	2e-23
449432668	105	PREDICTED: EPIDERMAL PATTERNING FACTOR-l	0.926	0.838	0.602	1e-22
15228864	107	epidermal patterning factor-like protein	0.642	0.570	0.786	1e-22
449455304	110	PREDICTED: EPIDERMAL PATTERNING FACTOR-l	0.621	0.536	0.796	4e-21

>gi|255552055|ref|XP_002517072.1| conserved hypothetical protein [Ricinus communis] gi|223543707|gb|EEF45235.1| conserved hypothetical protein [Ricinus communis]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 77/111 (69%), Gaps = 18/111 (16%)

Query: 3   RHRRLLSSFTAFTFLFF------VLTQLGTGGAQEKE------------TRVLDQKRISG 44
            H   LS+ TAFTFL F       L+ LG  G QEKE             R L QKR+ G
Sbjct: 8   HHSPHLSTLTAFTFLLFFSSSATTLSHLGNSGFQEKEEGEGSRLRTTLSDRFLSQKRLGG 67

Query: 45  PGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           PGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRC CGNKLFMP
Sbjct: 68  PGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107949|ref|XP_002314665.1| predicted protein [Populus trichocarpa] gi|222863705|gb|EEF00836.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 76/115 (66%), Gaps = 20/115 (17%)

Query: 1   MWRHRRLLSSFTAFTFLFF--------VLTQLGTGGAQEKET------------RVLDQK 40
           + R R  LS+ TAFTFL F        +L+QLG+G  QE               RVL QK
Sbjct: 3   LLRPRHHLSTLTAFTFLVFFSASATTVLLSQLGSGSLQEGGEDKGKGSGLGAFPRVLTQK 62

Query: 41  RISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           R  GPGSSPP+CRSKC +CSPC+PVHVPIQ G  MPLEYYPEAWRC CGNKLFMP
Sbjct: 63  RHGGPGSSPPSCRSKCDKCSPCEPVHVPIQHGWRMPLEYYPEAWRCKCGNKLFMP 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737105|emb|CBI26306.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 66/91 (72%), Gaps = 13/91 (14%)

Query: 18  FFVLTQLGTGG--AQEKETR-----------VLDQKRISGPGSSPPTCRSKCGRCSPCKP 64
           FF     GTGG   QE+E R           VL QKR+ GPGSSPPTCRSKCGRC+PCK 
Sbjct: 55  FFPHGFPGTGGLVGQEREERKRGSGSVAFERVLTQKRLGGPGSSPPTCRSKCGRCAPCKA 114

Query: 65  VHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           VHVPIQPG S+PLEYYPEAWRC CGNKLFMP
Sbjct: 115 VHVPIQPGFSIPLEYYPEAWRCKCGNKLFMP 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102109|ref|XP_002312549.1| predicted protein [Populus trichocarpa] gi|222852369|gb|EEE89916.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 66/88 (75%), Gaps = 12/88 (13%)

Query: 20  VLTQLGTGGAQEKET------------RVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHV 67
            L+QLG+G  Q+               RVL QKR++GPGSSPP+CRSKCG+CSPCK VHV
Sbjct: 29  TLSQLGSGVLQQGGEGRGKGGGLRAFQRVLTQKRLAGPGSSPPSCRSKCGKCSPCKAVHV 88

Query: 68  PIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
            IQPGLSMPLEYYPEAWRC CGN+LFMP
Sbjct: 89  AIQPGLSMPLEYYPEAWRCKCGNELFMP 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325113|ref|NP_001031641.1| epidermal patterning factor-like protein 4 [Arabidopsis thaliana] gi|122209356|sp|Q2V3I3.1|EPFL4_ARATH RecName: Full=EPIDERMAL PATTERNING FACTOR-like protein 4; Short=EPF-like protein 4; Flags: Precursor gi|98961833|gb|ABF59246.1| unknown protein [Arabidopsis thaliana] gi|332658088|gb|AEE83488.1| epidermal patterning factor-like protein 4 [Arabidopsis thaliana]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 53/60 (88%)

Query: 36  VLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           +   KR  GPGSSPPTCRSKCG+C PCKPVHVPIQPGLSMPLEYYPEAWRC CGNKLFMP
Sbjct: 50  IRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535972|ref|XP_003536515.1| PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4-like [Glycine max]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 73/109 (66%), Gaps = 19/109 (17%)

Query: 6   RLLSSFTAFTFLFF----VLTQLG---TGGA------QEKET------RVLDQKRISGPG 46
           R L +FT F+ LFF     +T L    +GGA      +EK+        V ++KR  GPG
Sbjct: 14  RWLQTFTTFSLLFFSSTSAITNLAPHPSGGAVKQLNQEEKQNGSPVDRVVAEEKRFGGPG 73

Query: 47  SSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           SSPP+CRSKCG CSPC PVHVP+QPGL + LEYYPEAWRC CGNKLFMP
Sbjct: 74  SSPPSCRSKCGWCSPCFPVHVPVQPGLIIRLEYYPEAWRCKCGNKLFMP 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804814|ref|XP_002870291.1| hypothetical protein ARALYDRAFT_493427 [Arabidopsis lyrata subsp. lyrata] gi|297316127|gb|EFH46550.1| hypothetical protein ARALYDRAFT_493427 [Arabidopsis lyrata subsp. lyrata]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 54/60 (90%)

Query: 36  VLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           V + KR  GPGSSPPTCRSKCG+C PCKPVHVPIQPGLSMPLEYYPEAWRC CG+KLFMP
Sbjct: 51  VENNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGSKLFMP 110

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432668|ref|XP_004134121.1| PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4-like [Cucumis sativus] gi|449520060|ref|XP_004167052.1| PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4-like [Cucumis sativus]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 62/88 (70%)

Query: 8   LSSFTAFTFLFFVLTQLGTGGAQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHV 67
           L   T F F     +   +  + E    + D+K + GPGSSPPTC +KCGRC PC+PVHV
Sbjct: 18  LLILTLFAFQLASASSSSSSSSSETGGWIGDRKSLVGPGSSPPTCLAKCGRCGPCEPVHV 77

Query: 68  PIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           PIQPGLS+PLEYYPEAWRC CGNKLFMP
Sbjct: 78  PIQPGLSLPLEYYPEAWRCKCGNKLFMP 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228864|ref|NP_188921.1| epidermal patterning factor-like protein 5 [Arabidopsis thaliana] gi|75274229|sp|Q9LUH9.1|EPFL5_ARATH RecName: Full=EPIDERMAL PATTERNING FACTOR-like protein 5; Short=EPF-like protein 5; Flags: Precursor gi|9279700|dbj|BAB01257.1| unnamed protein product [Arabidopsis thaliana] gi|46931210|gb|AAT06409.1| At3g22820 [Arabidopsis thaliana] gi|48310314|gb|AAT41796.1| At3g22820 [Arabidopsis thaliana] gi|332643159|gb|AEE76680.1| epidermal patterning factor-like protein 5 [Arabidopsis thaliana]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 53/61 (86%)

Query: 35  RVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFM 94
           +++DQKR+ GPGS PP CR KCG+C PCK VHVPIQPGL MPLEYYPEAWRC CGNKLFM
Sbjct: 47  QIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFM 106

Query: 95  P 95
           P
Sbjct: 107 P 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455304|ref|XP_004145393.1| PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4-like [Cucumis sativus]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 52/59 (88%)

Query: 37  LDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
           L ++R+SGPGSSPPTCRSKCG C PC  VHVPIQPGLS+PLEYYPEAWRC CGN L+MP
Sbjct: 52  LTRRRLSGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNTLYMP 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:1009023326	109	CLL2 "AT4G14723" [Arabidopsis	0.631	0.550	0.85	8.2e-28
TAIR|locus:2094424	107	CLL1 "AT3G22820" [Arabidopsis	0.642	0.570	0.786	3.2e-26
TAIR|locus:2065719	230	CHAL "AT2G30370" [Arabidopsis	0.673	0.278	0.621	4.9e-21
TAIR|locus:4010713606	99	AT1G80133 [Arabidopsis thalian	0.526	0.505	0.377	3.4e-06
TAIR|locus:3436392	104	EPF1 "AT2G20875" [Arabidopsis	0.663	0.605	0.338	5e-05
TAIR|locus:2145367	122	AT5G10310 "AT5G10310" [Arabido	0.273	0.213	0.461	0.00045
TAIR|locus:505006168	120	EPF2 "AT1G34245" [Arabidopsis	0.473	0.375	0.354	0.00093

TAIR|locus:1009023326 CLL2 "AT4G14723" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 51/60 (85%), Positives = 53/60 (88%)

Query:    36 VLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFMP 95
             +   KR  GPGSSPPTCRSKCG+C PCKPVHVPIQPGLSMPLEYYPEAWRC CGNKLFMP
Sbjct:    50 IRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010052 "guard cell differentiation" evidence=IMP

GO:0010374 "stomatal complex development" evidence=IMP

TAIR|locus:2094424 CLL1 "AT3G22820" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 48/61 (78%), Positives = 53/61 (86%)

Query:    35 RVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLFM 94
             +++DQKR+ GPGS PP CR KCG+C PCK VHVPIQPGL MPLEYYPEAWRC CGNKLFM
Sbjct:    47 QIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFM 106

Query:    95 P 95
             P
Sbjct:   107 P 107

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010052 "guard cell differentiation" evidence=IMP

GO:0010374 "stomatal complex development" evidence=IMP

TAIR|locus:2065719 CHAL "AT2G30370" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 41/66 (62%), Positives = 50/66 (75%)

Query:    30 QEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCG 89
             + KE  +  ++ + G GSSPP C SKCGRC+PCKPVHVP+ PG  +  EYYPEAWRC CG
Sbjct:   167 RSKEAEL--RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCG 224

Query:    90 NKLFMP 95
             NKL+MP
Sbjct:   225 NKLYMP 230

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:2000122 "negative regulation of stomatal complex development" evidence=IGI;IMP

TAIR|locus:4010713606 AT1G80133 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query:    46 GSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLE---YYPEAWRCNCGNKLFMP 95
             GS PP C +KC  C PC P    I+       +   YYP  W C C +++F P
Sbjct:    47 GSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDSEPYYPVKWICRCRDRVFEP 99

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:3436392 EPF1 "AT2G20875" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query:    29 AQEKETRVLDQKRISGPGSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNC 88
             A +++ R  D  +++G  S  P C   CG CSPC+ V V          E  P A++C C
Sbjct:    39 ALKRQRRRPDTVQVAG--SRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMC 96

Query:    89 GNKLF 93
              NK +
Sbjct:    97 NNKSY 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0010375 "stomatal complex patterning" evidence=IMP

GO:0010374 "stomatal complex development" evidence=IGI

GO:2000122 "negative regulation of stomatal complex development" evidence=IMP

TAIR|locus:2145367 AT5G10310 "AT5G10310" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query:    46 GSSPPTCRSKCGRCSPCKPVHVPIQP 71
             GS+PP+C ++C  C PC  + VP  P
Sbjct:    49 GSTPPSCHNRCNNCHPCMAIQVPTLP 74

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006168 EPF2 "AT1G34245" [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query:    46 GSSPPTCRSKCGRCSPCKPVHVPIQPGLSMPLEYYPEAWRCNCGNKLF 93
             GSS P C   CG CSPCK V +  +  ++   E     +RC C  + +
Sbjct:    70 GSSLPDCSYACGACSPCKRVMISFECSVA---ESCSVIYRCTCRGRYY 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.491    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        73   0.00091  102 3  12 22  0.37    29
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  503 (54 KB)
  Total size of DFA:  92 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.15u 0.06s 8.21t   Elapsed:  00:00:09
  Total cpu time:  8.15u 0.06s 8.21t   Elapsed:  00:00:09
  Start:  Fri May 10 00:01:16 2013   End:  Fri May 10 00:01:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0010052 "guard cell differentiation" evidence=IMP

GO:0010374 "stomatal complex development" evidence=IMP

GO:0048730 "epidermis morphogenesis" evidence=IMP

GO:2000122 "negative regulation of stomatal complex development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2V3I3	EPFL4_ARATH	No assigned EC number	0.85	0.6315	0.5504	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PLN03207	113	stomagen; Provisional	97.68

>PLN03207 stomagen; Provisional

Probab=97.68  E-value=9.1e-05  Score=52.95  Aligned_cols=49  Identities=29%  Similarity=0.714  Sum_probs=38.2

Q ss_pred             hhhcccCCCCCCCccc-CCCCCC-CCCcceeeeCCCCCCCCCCccccceeeccC
Q 038899           38 DQKRISGPGSSPPTCR-SKCGRC-SPCKPVHVPIQPGLSMPLEYYPEAWRCNCG   89 (95)
Q Consensus        38 ~~~r~~~~GS~PP~C~-~KC~~C-~PC~aV~Vp~~~~~~~~~eY~P~~WKCkCg   89 (95)
                      .-.|..+|||+.|.|. |-|.+| .-|.+.|||+......++.|   -|||-|+
T Consensus        62 k~srr~~igs~aptctynecrgcr~kc~~eqvpv~~~dp~nsay---hy~cvch  112 (113)
T PLN03207         62 KSSRRLMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY---HYKCVCH  112 (113)
T ss_pred             hhhhhhhhcCcCCccccccccCccccccceeccccCCCCCcccc---ccccCCC
Confidence            3445567999999997 689999 67999999998766655555   4788875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2liy_A	45	Epidermal patterning factor-like protein 9; plant	97.42

>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}

Probab=97.42  E-value=8.6e-05  Score=44.89  Aligned_cols=42  Identities=33%  Similarity=0.869  Sum_probs=35.4

Q ss_pred             CCCCCCccc-CCCCCC-CCCcceeeeCCCCCCCCCCccccceeeccC
Q 038899           45 PGSSPPTCR-SKCGRC-SPCKPVHVPIQPGLSMPLEYYPEAWRCNCG   89 (95)
Q Consensus        45 ~GS~PP~C~-~KC~~C-~PC~aV~Vp~~~~~~~~~eY~P~~WKCkCg   89 (95)
                      |||+.|+|. |-|..| .-|.+.|||+......++.|   -|||.|+
T Consensus         1 igS~APtCTYNECrgCr~~C~aeqvPvd~~dP~~SAY---hY~CvCh   44 (45)
T 2liy_A            1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY---HYRCVCH   44 (45)
T ss_dssp             CCSCTTTTCGGGGTTCCSEEEEEEEESSCSSSCSCCE---EEEEEEE
T ss_pred             CCccCCceeehhhcCcccccceeeccccCCCcccchh---eeEeEec
Confidence            699999997 689999 67999999998776666666   4899986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00