Citrus Sinensis ID: 038901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAK
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccHHHHHHHHcccccccccccccccccEEEEEEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEccccccccccccHccccHEHccccccccHHHHHccccEcccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgervidgdwkptspsngerTVVLLGrtgngksatgnsiLGRRAFkasagssgvtttcemkttvlkdgqvvnvidtpglfdlsagsefvGKEIVKCLGmakdgihak
Flexible Loop (DISEMBL)
mgervidgdwkptspsngerTVVLlgrtgngksatgnsilgrrafkasagssgvtttCEMKttvlkdgqvvnVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAK
Low Complexity Region (SEG)
MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAK
Disordered region (IsUnstruct)
****************************************************GVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA*******
Disordered Region (DISOPRED)
*********************VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA*
Disordered Region (DISEMBL)
********DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK*********TTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAK
Disordered Region (DISPRO)
*****************GERTVVLLGRTGNGKSAT******RRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.794	0.240	0.611	4e-25
O81025	463	Putative protein PHLOEM P	no	no	0.813	0.187	0.505	1e-20
Q9NUV9	329	GTPase IMAP family member	yes	no	0.850	0.276	0.423	5e-17
Q8K3K9	310	GTPase IMAP family member	yes	no	0.785	0.270	0.458	5e-14
Q99JY3	219	GTPase IMAP family member	no	no	0.785	0.383	0.4	1e-11
Q9UG22	337	GTPase IMAP family member	no	no	0.887	0.281	0.36	2e-11
Q96F15	307	GTPase IMAP family member	no	no	0.775	0.270	0.416	4e-11
Q8K349	305	GTPase IMAP family member	no	no	0.766	0.268	0.458	6e-11
Q8NHV1	300	GTPase IMAP family member	no	no	0.785	0.28	0.411	2e-10
Q8ND71	665	GTPase IMAP family member	no	no	0.813	0.130	0.409	2e-10

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 64/85 (75%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VL+GRTGNGKSATGNSI+  + FK+   SSGVT  C     V  +G ++NVIDTPGLFD
Sbjct: 45  IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHA 106
           LS  +EF+GKEIVKCL +A  G+HA
Sbjct: 105 LSVSAEFIGKEIVKCLTLADGGLHA 129

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 62/87 (71%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
           + +VL+GRTGNGKS+TGN++LG + FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHA 106
            D     + +  EI+ CL MA++GIHA
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHA 92

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI 74
           P N +  +VL+G+TG GKSATGNSILGR+ F +   +  +T  CE +++  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           DTPG+FD    +    KEI++C+ +   G HA
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 116

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILGR+AF +   +  +T  CE K   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHA 106
                    KEI +C+ +   G HA
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHA 116

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILG + F +   +  +T  CE + +   DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHA 106
                    +EI + + +   G HA
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHA 116

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q9UG22|GIMA2_HUMAN GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68

Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
            + ++V +IDTP +F      E + KE+ +C  ++  G H
Sbjct: 69  GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH 107

Homo sapiens (taxid: 9606)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++L+G+TG GKSATGNSILG+  F++   +  VT TC++KT    +G+ V V+DTP +F+
Sbjct: 30  IILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTW-NGRKVLVVDTPSIFE 88

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIH 105
             A ++ + K I  C  ++  G H
Sbjct: 89  SQADTQELYKNIGDCYLLSAPGPH 112

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++L+G+TG+GKSATGNSILGR+AF++   +  VTTT + K T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHA 106
                E   K+I  C  +A  G HA
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHA 187

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG+GKSAT N+ILG   F +   +  VT  C+ K +    G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHA 106
                +   KEI +C+  +  G HA
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHA 94

Homo sapiens (taxid: 9606)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78
           E  ++LLG+  +GKSATGN+ILG+  FK+      V   C+ ++ VL++ +VV VIDTP 
Sbjct: 10  ELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPD 68

Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           LF   A +E   + I  CL ++   +HA
Sbjct: 69  LFSSIACAEDKQRNIQHCLELSAPSLHA 96

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
255539412	339	aig1, putative [Ricinus communis] gi|223	0.990	0.312	0.764	2e-41
224146305	335	predicted protein [Populus trichocarpa]	0.990	0.316	0.745	2e-40
147836179	566	hypothetical protein VITISV_037325 [Viti	0.990	0.187	0.716	9e-40
296089429	345	unnamed protein product [Vitis vinifera]	0.990	0.307	0.716	1e-38
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.990	0.311	0.716	1e-38
224136037	259	predicted protein [Populus trichocarpa]	0.869	0.359	0.806	2e-38
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.943	0.288	0.772	1e-37
363814318	336	uncharacterized protein LOC100807910 [Gl	0.990	0.315	0.726	1e-37
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.990	0.310	0.718	3e-35
388495830	288	unknown [Lotus japonicus]	0.981	0.364	0.688	5e-34

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/106 (76%), Positives = 93/106 (87%)

Query: 1   MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
           MG   ID DW+ TSPSNG RTVVL+GRTGNGKSATGNS+LGR+AFK+ A SSGVT+TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           + TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVKC+ MAKDGIHA
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHA 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/106 (74%), Positives = 94/106 (88%)

Query: 1   MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
           MG   +D DW+  SPSNG RT+VL+GRTGNGKSATGNSILGR+AFK+ A SSGVT++CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           + TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHA 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836179|emb|CAN68778.1| hypothetical protein VITISV_037325 [Vitis vinifera]

 Score =  167 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 76/106 (71%), Positives = 95/106 (89%)

Query: 1   MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
           MG   ID +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGR++FK+ A SSGVT+TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHA 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/106 (71%), Positives = 95/106 (89%)

Query: 1   MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
           MG   ID +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGR++FK+ A SSGVT+TCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHA 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/106 (71%), Positives = 95/106 (89%)

Query: 1   MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
           MG   ID +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGR++FK+ A SSGVT+TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHA 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 87/93 (93%)

Query: 14  SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNV 73
           SPSNG RTVVL+GRTGNGKSATGNSILG++AFK+ A SSGVT+TCE+++TVL DGQ++NV
Sbjct: 2   SPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIINV 61

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           IDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA
Sbjct: 62  IDTPGLFDFSAGSEFVGREIVKCINMAKDGIHA 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/101 (77%), Positives = 90/101 (89%)

Query: 6   IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
           ID DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGR+AFK+ A SS V+T+CE+KTT L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
            +GQ+VNVIDTPGLFDLSAGSEFVGKEIVKC+ +AKDGIHA
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHA 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 89/106 (83%)

Query: 1   MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
           MG   I  DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGR+ FK+ A SS V+T+CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           +TT L DGQ+VNVIDTPGLFDLS GSEFVGKEIVKC+ +AKDGIHA
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHA 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/110 (71%), Positives = 92/110 (83%), Gaps = 4/110 (3%)

Query: 1   MGERVIDGDWKP--TSPSNGE--RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT 56
           MG   I+ DW+   TSP+NG   RTVVL+GRTGNGKSATGNSILGR+AFK+ A SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVKC+ MAKDGIHA
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHA 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495830|gb|AFK35981.1| unknown [Lotus japonicus]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 85/106 (80%), Gaps = 1/106 (0%)

Query: 1   MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
           MG    D DW+ TS +N  RTVVL+GRTGNGKSATGNSILG++ FK+ A S GVT++CE 
Sbjct: 1   MGGNSFDEDWELTSSANEVRTVVLVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
            T  L DGQ VNVIDTPGLFD+SAGS+FVGKEIV C+ +AKDGIHA
Sbjct: 61  HTIEL-DGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHA 105

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.990	0.309	0.603	8.5e-33
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.906	0.288	0.556	1.4e-25
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.813	0.220	0.597	1.4e-25
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.850	0.292	0.571	9.7e-25
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.794	0.240	0.611	6.8e-24
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.915	0.300	0.5	1e-22
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.887	0.282	0.524	1.3e-22
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.803	0.257	0.546	1.6e-22
TAIR|locus:2140548	335	AT4G09930 [Arabidopsis thalian	0.943	0.301	0.504	3.9e-21
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.813	0.187	0.505	3.1e-20

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 64/106 (60%), Positives = 88/106 (83%)

Query:     1 MGERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM 60
             MG  +++ DW+  S SN +RT+VL+GRTGNGKSATGNSILGR+AF++ A + GVT+TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
             +  V +DG ++NV+DTPGLFDLS  ++F+GKEIV+C+ +A+DGIHA
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHA 111

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 54/97 (55%), Positives = 72/97 (74%)

Query:    10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQ 69
             W+  S S   + VVL+GRTGNGKSATGNSI+GR+ F++   + GVTT C+    V  DG 
Sbjct:    26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85

Query:    70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
             ++NVIDTPGLFDL+  +EF+ KEIV CL +A++G+HA
Sbjct:    86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHA 122

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 52/87 (59%), Positives = 72/87 (82%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
             RT++L+GR+GNGKSATGNSILGR+AFK+   +SGVTT CE++++ L +GQ++NVIDTPGL
Sbjct:    48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHA 106
             F LS  +EF  +EI++C  + K+GI A
Sbjct:   108 FSLSPSTEFTCREILRCFSLTKEGIDA 134

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 52/91 (57%), Positives = 68/91 (74%)

Query:    16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVID 75
             S     +VL+GRTGNGKSATGNS++G++ F + A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
             TPGLFDLS  +E++ KEIV+CL +A+ GIHA
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHA 103

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/85 (61%), Positives = 64/85 (75%)

Query:    22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
             +VL+GRTGNGKSATGNSI+  + FK+   SSGVT  C     V  +G ++NVIDTPGLFD
Sbjct:    45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104

Query:    82 LSAGSEFVGKEIVKCLGMAKDGIHA 106
             LS  +EF+GKEIVKCL +A  G+HA
Sbjct:   105 LSVSAEFIGKEIVKCLTLADGGLHA 129

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 49/98 (50%), Positives = 70/98 (71%)

Query:     9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG 68
             D +  S S   + +VL+GRTGNGKSATGNS++G++ F++   ++GVT  CE    V   G
Sbjct:     9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68

Query:    69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
               +NVIDTPGLFDLS  +E++ +EI+ CL +A+DG+HA
Sbjct:    69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHA 106

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 53/101 (52%), Positives = 71/101 (70%)

Query:     6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
             ++ DWKP      ERT+VLLGRTGNGKSATGNSILG+  F++ A    +T  C++  + L
Sbjct:    10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
              +G  +NVIDTPGLF  S+ ++F  +EIV+CL +AK GI A
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDA 104

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKSATGNS++G+  F + A ++GVT TC+    V   G  +NVIDTPGL
Sbjct:    14 KNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPGL 73

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIH 105
             FDLS  +EF+ KEI+ CL +A+ G+H
Sbjct:    74 FDLSVSAEFISKEIINCLRLAEGGLH 99

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140548 AT4G09930 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/105 (50%), Positives = 71/105 (67%)

Query:     2 GERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK 61
             G+   + D  P  PS   RT+VL+G +GNGKSATGNSIL   AFK+   ++ VT  CE+K
Sbjct:    13 GQDACESDL-PMKPS---RTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELK 68

Query:    62 TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
             +T   +GQ++NVIDTPGLF L   +E   +EI+KC  +AK+GI A
Sbjct:    69 STKRPNGQIINVIDTPGLFSLFPSNESTIREILKCSHLAKEGIDA 113

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 44/87 (50%), Positives = 62/87 (71%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKS+TGN++LG + FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHA 106
              D     + +  EI+ CL MA++GIHA
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHA 92

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
pfam04548	211	pfam04548, AIG1, AIG1 family	4e-42
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	2e-40
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	4e-12
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	7e-09
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	2e-06
cd00880	161	cd00880, Era_like, E	6e-06
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-05
PRK15494	339	PRK15494, era, GTPase Era; Provisional	9e-05
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	9e-05
PRK01889	356	PRK01889, PRK01889, GTPase RsgA; Reviewed	9e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	4e-04
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	5e-04
pfam00735	280	pfam00735, Septin, Septin	0.001
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.001
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	0.001
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	0.003

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  136 bits (346), Expect = 4e-42
 Identities = 49/87 (56%), Positives = 69/87 (79%), Gaps = 1/87 (1%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGNSILGR+AF++   + GVT TC++ +    DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           FDLS  ++F+ KEI++CL +A+ G HA
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHA 86

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  132 bits (334), Expect = 2e-40
 Identities = 48/87 (55%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGN+ILGR+ F++   +SGVT TC+ ++ V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           FD S   E + KEI++CL ++  G HA
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHA 86

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
          T+++LG+TG GKS+T NSI G R    SA  S      E+  TV  DG  +N+IDTPGL 
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81 DLSAGS 86
          +     
Sbjct: 91 ESQDQR 96

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 51.5 bits (123), Expect = 7e-09
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 21  TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
            +++LG++G GKSAT NSI G   F   A   G T+  E++  V   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL- 176

Query: 81  DLSAGSE 87
             S+ S+
Sbjct: 177 -KSSASD 182

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASA-GSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
          T++++G+ G GKS+T NSI+G R    SA  S G+      +T   + G  +N+IDTPGL
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96

Query: 80 FD 81
           +
Sbjct: 97 IE 98

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 41.8 bits (99), Expect = 6e-06
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL 82
           + GR   GKS+  N++LG+     S    G T     K   L     V +IDTPGL + 
Sbjct: 1  AIFGRPNVGKSSLLNALLGQNVGIVSP-IPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83 SAGSEFVGKEIVK 95
                  +E  +
Sbjct: 60 GGLGRERVEEARQ 72

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV-VNVIDTPGLFD 81
          V++GR G GKS+  N++LG    + S    G T   ++    L  G+V + ++DTPGL +
Sbjct: 1  VVVGRGGVGKSSLLNALLGGEVGEVSD-VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 21  TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPG 78
           +V ++GR  +GKS   N I+G    K S  +  V TT  + T +  LKD QV+ + DTPG
Sbjct: 54  SVCIIGRPNSGKSTLLNRIIGE---KLSIVTPKVQTTRSIITGIITLKDTQVI-LYDTPG 109

Query: 79  LFDLSAGSEFVGKEIVKC 96
           +F+     E   K +V+C
Sbjct: 110 IFEPKGSLE---KAMVRC 124

Length = 339

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 38.4 bits (90), Expect = 9e-05
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
           V L+GR   GKS   N++ G +    S    G T   +    VL  G+ + ++DTPGL
Sbjct: 1  RVALVGRPNVGKSTLINALTGAKVAIVSD-YPGTTR--DPILGVLGLGRQIILVDTPGL 56

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 17  NGERTVVLLGRTGNGKSATGNSILGRRAFKASA----GSSG--VTTTCEMKTTVLKDGQV 70
           +G +TV LLG +G GKS   N++LG    K  A     S G   TT  E+    L  G +
Sbjct: 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH--PLPSGGL 250

Query: 71  VNVIDTPGL 79
             +IDTPG+
Sbjct: 251 --LIDTPGM 257

Length = 356

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTP 77
          + TV L+G    GK+   N++ G  A +      GVT   E K   LK  G  + ++D P
Sbjct: 3  KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVTV--EKKEGKLKYKGHEIEIVDLP 58

Query: 78 GLFDLSAGSE 87
          G + L+A SE
Sbjct: 59 GTYSLTAYSE 68

Length = 653

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 14/64 (21%)

Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT-TTCEMKTTVLK----DGQVVNVID 75
           + ++G    GKS   N++LG          +GVT TT     TVL+     G  V ++D
Sbjct: 2  LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTA--VITVLRYGLLKG--VVLVD 52

Query: 76 TPGL 79
          TPGL
Sbjct: 53 TPGL 56

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 21 TVVLLGRTGNGKSATGNSILGR-----RAFKASAGSSGVTTTCEMKTTVLKDGQV---VN 72
          T++++G +G GK+   N++        R     +     T   +  T  +++  V   + 
Sbjct: 6  TLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLT 65

Query: 73 VIDTPGLFD 81
          VIDTPG  D
Sbjct: 66 VIDTPGFGD 74

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQ--VVNVID 75
          E  +V++G    GKS   N +LG +            TT    TTV++ DG+    N++D
Sbjct: 1  EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKP---GTTRNYVTTVIEEDGKTYKFNLLD 57

Query: 76 TPGLFDLSAGSEFVGKEIVKCLGM 99
          T G  D  A      + +   L +
Sbjct: 58 TAGQEDYDAIRRLYYRAVESSLRV 81

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
          V+L+G TG GKS+  N++      + S    G   T  ++ +   DG+ + + DTPGL D
Sbjct: 42 VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY--DGENLVLWDTPGLGD 99

Length = 296

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVID 75
                 V ++G    GKS+  N++L    FK   GS   TT        +K  + + + D
Sbjct: 88  YKKGIRVGVVGLPNVGKSSFINALL--NKFKLKVGSIPGTTK---LQQDVKLDKEIYLYD 142

Query: 76  TPGL 79
           TPG+
Sbjct: 143 TPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.7
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.7
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.67
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.66
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.66
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.66
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.64
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.63
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.63
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.63
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.62
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.6
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.58
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.58
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.57
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.55
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.55
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.55
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.55
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.55
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.54
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.54
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.54
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.54
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.54
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.54
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.53
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.53
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.52
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.52
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.52
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.52
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.51
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.51
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.51
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.51
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.51
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.51
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.51
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.51
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.5
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.5
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.5
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.5
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.5
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.5
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.5
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.5
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.5
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.5
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.49
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.49
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.49
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.49
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.49
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.49
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.49
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.49
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.49
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.49
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.49
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.49
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.49
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.49
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.49
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.49
PRK10908	222	cell division protein FtsE; Provisional	99.48
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.48
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.48
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.48
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.48
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.48
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.48
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.48
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.48
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.48
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.48
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.48
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.47
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.47
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.47
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.47
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.47
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.47
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.47
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.47
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.47
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.47
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.46
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.46
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.46
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.46
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.46
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.46
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.46
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.45
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.45
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.45
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.45
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.45
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.45
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.45
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.45
COG4559	259	ABC-type hemin transport system, ATPase component	99.44
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.44
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.44
COG4988	559	CydD ABC-type transport system involved in cytochr	99.44
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.44
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.44
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.44
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.43
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.43
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.43
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.43
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.43
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.43
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.43
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.43
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.43
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.42
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.42
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.42
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.42
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.42
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.42
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.42
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.42
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.42
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.42
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.42
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.41
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.41
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.41
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.41
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.41
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.41
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.41
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.41
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.41
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.41
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.41
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.41
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.41
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.41
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.41
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.4
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.4
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.4
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.4
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.4
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.4
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.4
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.4
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.4
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.39
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.39
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.39
cd03246	173	ABCC_Protease_Secretion This family represents the	99.39
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.39
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.39
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.39
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.39
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.39
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.39
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.39
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.39
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.39
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.39
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.39
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.39
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.39
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.38
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.38
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.38
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.38
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.38
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.38
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.38
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.38
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.38
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.38
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.38
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.37
COG4181	228	Predicted ABC-type transport system involved in ly	99.37
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.37
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.37
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.37
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.37
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.37
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.37
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.37
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.36
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.36
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.36
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.36
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.36
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.36
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.36
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.36
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.35
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.35
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.35
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.35
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.35
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.35
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.35
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.35
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.35
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.34
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.34
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.34
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.34
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.34
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.34
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.33
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.33
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.33
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.33
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.33
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.33
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.33
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.33
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.33
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.32
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.32
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.32
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.32
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.32
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.32
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.32
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.32
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.32
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.32
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.31
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.31
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.31
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.31
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.31
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.31
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.31
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.31
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.31
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.3
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.3
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.3
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.3
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.3
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.3
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.3
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.29
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.29
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.29
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.29
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.29
PRK00098	298	GTPase RsgA; Reviewed	99.29
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.29
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.29
PTZ00243	1560	ABC transporter; Provisional	99.29
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.29
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.29
PLN03232	1495	ABC transporter C family member; Provisional	99.28
PLN03130	1622	ABC transporter C family member; Provisional	99.28
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.28
PLN03211	659	ABC transporter G-25; Provisional	99.28
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.28
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.27
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.27
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.27
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.27
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.27
COG0488	530	Uup ATPase components of ABC transporters with dup	99.27
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.27
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.27
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.26
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.26
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.26
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.26
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.26
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.26
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.26
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.25
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.25
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.25
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.25
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.24
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.24
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.24
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.24
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.24
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.24
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.24
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.24
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.24
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.23
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.23
PLN03140	1470	ABC transporter G family member; Provisional	99.23
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.23
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.23
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.23
PRK11147	635	ABC transporter ATPase component; Reviewed	99.23
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.22
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.22
COG1159	298	Era GTPase [General function prediction only]	99.22
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.22
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.21
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.21
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.2
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.2
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.2
COG4987	573	CydC ABC-type transport system involved in cytochr	99.2
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.2
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.2
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.2
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.2
PRK10938	490	putative molybdenum transport ATP-binding protein	99.19
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.19
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.19
COG1162	301	Predicted GTPases [General function prediction onl	99.19
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.19
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.19
COG1123	539	ATPase components of various ABC-type transport sy	99.19
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.18
PRK13409	590	putative ATPase RIL; Provisional	99.18
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.17
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.16
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.16
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.16
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.16
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.16
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.15
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.15
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.14
PRK12289	352	GTPase RsgA; Reviewed	99.14
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.13
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.13
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.13
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.12
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.12
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.12
PRK12288	347	GTPase RsgA; Reviewed	99.11
PLN03232	1495	ABC transporter C family member; Provisional	99.11
PRK10938	490	putative molybdenum transport ATP-binding protein	99.09
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.09
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.09
PRK13409	590	putative ATPase RIL; Provisional	99.09
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.08
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.08
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.07
PLN03140	1470	ABC transporter G family member; Provisional	99.07
PRK12298	390	obgE GTPase CgtA; Reviewed	99.07
COG1160	444	Predicted GTPases [General function prediction onl	99.07
PRK11147	635	ABC transporter ATPase component; Reviewed	99.06
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.06
PLN03073	718	ABC transporter F family; Provisional	99.06
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.06
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.05
PLN03130	1622	ABC transporter C family member; Provisional	99.05
COG0488	530	Uup ATPase components of ABC transporters with dup	99.05
PRK00089	292	era GTPase Era; Reviewed	99.04
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.04
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.03
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.02
PTZ00243	1560	ABC transporter; Provisional	99.02
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.02
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.01
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.01
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.01
PRK12299	335	obgE GTPase CgtA; Reviewed	99.0
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.0
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.99
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.99
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.99
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.99
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.98
PTZ00258	390	GTP-binding protein; Provisional	98.98
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.97
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.97
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.97
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.97
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.97
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.95
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.94
COG0486	454	ThdF Predicted GTPase [General function prediction	98.94
PRK09601	364	GTP-binding protein YchF; Reviewed	98.93
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.92
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.91
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.91
PRK12297	424	obgE GTPase CgtA; Reviewed	98.91
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.9
PRK12296	500	obgE GTPase CgtA; Reviewed	98.9
COG4178	604	ABC-type uncharacterized transport system, permeas	98.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.89
COG1123	539	ATPase components of various ABC-type transport sy	98.89
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.88
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.87
COG3596	296	Predicted GTPase [General function prediction only	98.87
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.87
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.87
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.85
PRK13796	365	GTPase YqeH; Provisional	98.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.85
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.85
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.84
PRK15494	339	era GTPase Era; Provisional	98.84
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.84
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.84
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.83
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.83
PRK01889	356	GTPase RsgA; Reviewed	98.83
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.83
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.83
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.82
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.82
PLN03073	718	ABC transporter F family; Provisional	98.81
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.81
COG0218	200	Predicted GTPase [General function prediction only	98.81
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.79
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.79
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.78
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.78
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.77
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.77
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.76
COG1161	322	Predicted GTPases [General function prediction onl	98.76
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.75
PRK04213	201	GTP-binding protein; Provisional	98.74
PRK00093	435	GTP-binding protein Der; Reviewed	98.74
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.74
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.73
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.73
PRK11058	426	GTPase HflX; Provisional	98.73
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.73
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.73
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.72
PRK00093	435	GTP-binding protein Der; Reviewed	98.71
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.71
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.71
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.71
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.7
COG1084	346	Predicted GTPase [General function prediction only	98.7
COG1160	444	Predicted GTPases [General function prediction onl	98.7
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.7
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.69
COG0536	369	Obg Predicted GTPase [General function prediction	98.69
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.69
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.68
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.68
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.68
COG4172	534	ABC-type uncharacterized transport system, duplica	98.68
PRK09825	176	idnK D-gluconate kinase; Provisional	98.68
PRK03003	472	GTP-binding protein Der; Reviewed	98.67
cd00881	189	GTP_translation_factor GTP translation factor fami	98.67
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.67
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.67
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.66
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.66
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.66
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.66
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.65
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.65
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.65
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.65
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.64
PRK09602	396	translation-associated GTPase; Reviewed	98.64
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.63
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.63
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.63
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.62
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.62
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.62
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.61
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.61
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.61
PRK00300	205	gmk guanylate kinase; Provisional	98.61
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.6
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.6
PRK03003	472	GTP-binding protein Der; Reviewed	98.59
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.58
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.58
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.58
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.58

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.70  E-value=1.8e-17  Score=111.33  Aligned_cols=83  Identities=17%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .........|+.++|+||||||||||||+|+|++.+++|.+..+........   ..++.+++|+|...+|++     ++
T Consensus        20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~---P~~R~iamVFQ~yALyPh-----mt   91 (338)
T COG3839          20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP---PEKRGIAMVFQNYALYPH-----MT   91 (338)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---hhHCCEEEEeCCccccCC-----Cc
Confidence            3445566678999999999999999999999999999997665555444322   236789999999999999     89


Q ss_pred             HHHHHHHhhcc
Q 038901           90 GKEIVKCLGMA  100 (107)
Q Consensus        90 ~~~~~~~~~~~  100 (107)
                      +.+++.|-.+.
T Consensus        92 V~~Niaf~Lk~  102 (338)
T COG3839          92 VYENIAFGLKL  102 (338)
T ss_pred             HHHHhhhhhhh
Confidence            99998876554

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.70  E-value=1.5e-17  Score=110.58  Aligned_cols=88  Identities=13%  Similarity=0.003  Sum_probs=67.8

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      ........+|++++|+||||||||||||+|+|+..+++|.+...+...... ... .+++++|++|.|.+++.     +|
T Consensus        22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~-~~~~igy~~~~~~~~~~-----lT   94 (293)
T COG1131          22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAK-VRRRIGYVPQEPSLYPE-----LT   94 (293)
T ss_pred             eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHH-HHhheEEEccCCCCCcc-----cc
Confidence            344455667899999999999999999999999999988654433222111 111 25679999999999988     99


Q ss_pred             HHHHHHHhhccCCCC
Q 038901           90 GKEIVKCLGMAKDGI  104 (107)
Q Consensus        90 ~~~~~~~~~~~~~~~  104 (107)
                      ++|++.+++.++..+
T Consensus        95 ~~e~l~~~~~l~~~~  109 (293)
T COG1131          95 VRENLEFFARLYGLS  109 (293)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999998887643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.67  E-value=4.9e-17  Score=109.69  Aligned_cols=84  Identities=17%  Similarity=0.035  Sum_probs=69.1

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901            8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus         8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      ......+...+|+.+.|+|||||||||||++|+|+..+++|.+..++.......   ..++.+++|+|...+|++     
T Consensus        20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp---p~kR~ig~VFQ~YALFPH-----   91 (352)
T COG3842          20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP---PEKRPIGMVFQSYALFPH-----   91 (352)
T ss_pred             EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---hhhcccceeecCcccCCC-----
Confidence            444566677889999999999999999999999999999997766666554433   246889999999999999     


Q ss_pred             HHHHHHHHHhhc
Q 038901           88 FVGKEIVKCLGM   99 (107)
Q Consensus        88 ~~~~~~~~~~~~   99 (107)
                      +++.+++.|-..
T Consensus        92 ltV~~NVafGLk  103 (352)
T COG3842          92 MTVEENVAFGLK  103 (352)
T ss_pred             CcHHHHhhhhhh
Confidence            899999877655

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.66  E-value=4.2e-16  Score=99.47  Aligned_cols=85  Identities=46%  Similarity=0.803  Sum_probs=62.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhhcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~~~  100 (107)
                      +|.|+|++||||||++|.|+|...+..+......+..+......+ ....+.|+||||+++.....+...+++.+++..+
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            689999999999999999999998777644445555555555544 7788999999999887666677788889988888


Q ss_pred             CCCCCC
Q 038901          101 KDGIHA  106 (107)
Q Consensus       101 ~~~~~~  106 (107)
                      .++||+
T Consensus        81 ~~g~ha   86 (212)
T PF04548_consen   81 SPGPHA   86 (212)
T ss_dssp             TT-ESE
T ss_pred             cCCCeE
Confidence            888885

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.66  E-value=3e-17  Score=103.60  Aligned_cols=83  Identities=18%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      .........+|++++|+||||||||||++||.++..+++|.+...+............+++.++|+|...+|++     +
T Consensus        18 Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH-----l   92 (240)
T COG1126          18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH-----L   92 (240)
T ss_pred             ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccccccc-----c
Confidence            34455667788999999999999999999999999999996554443221111222235789999999999998     7


Q ss_pred             HHHHHHHH
Q 038901           89 VGKEIVKC   96 (107)
Q Consensus        89 ~~~~~~~~   96 (107)
                      ++.+++..
T Consensus        93 TvleNv~l  100 (240)
T COG1126          93 TVLENVTL  100 (240)
T ss_pred             hHHHHHHh
Confidence            77776544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.66  E-value=5.7e-17  Score=103.61  Aligned_cols=87  Identities=15%  Similarity=0.075  Sum_probs=66.4

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +..........++|+.++|+||||||||||+|+|.++..|++|.+...+.......   ...+.++.+++|+|...+.+.
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            44556667778889999999999999999999999999999886444443222111   122335789999999999988


Q ss_pred             CCCchHHHHHHHHHh
Q 038901           83 SAGSEFVGKEIVKCL   97 (107)
Q Consensus        83 ~~~~~~~~~~~~~~~   97 (107)
                           +++.|++...
T Consensus        98 -----ltv~ENv~lp  107 (226)
T COG1136          98 -----LTVLENVELP  107 (226)
T ss_pred             -----CCHHHHHHhH
Confidence                 8888888753

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.64  E-value=7.8e-17  Score=102.46  Aligned_cols=88  Identities=16%  Similarity=0.085  Sum_probs=70.9

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~   85 (107)
                      ++..+.......+|++++|+|+||+|||||+++|+|+.++.+|.+...+............+.-+.++++...+|+.   
T Consensus        16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~---   92 (237)
T COG0410          16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR---   92 (237)
T ss_pred             eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh---
Confidence            34556667778889999999999999999999999999999887666665555544444445679999999999988   


Q ss_pred             chHHHHHHHHHhh
Q 038901           86 SEFVGKEIVKCLG   98 (107)
Q Consensus        86 ~~~~~~~~~~~~~   98 (107)
                        +|++|++..-.
T Consensus        93 --LTVeENL~~g~  103 (237)
T COG0410          93 --LTVEENLLLGA  103 (237)
T ss_pred             --CcHHHHHhhhh
Confidence              99999987643

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.63  E-value=3.7e-15  Score=93.96  Aligned_cols=85  Identities=55%  Similarity=0.908  Sum_probs=62.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhhcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~~~  100 (107)
                      +|+|+|++|+|||||+|+|+|...+..+....+.+..+......+ ....+.++||||+.+.....+....++..++..+
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            689999999999999999999877665543344555555454444 5678899999999987544445566777777766


Q ss_pred             CCCCCC
Q 038901          101 KDGIHA  106 (107)
Q Consensus       101 ~~~~~~  106 (107)
                      .+++|+
T Consensus        81 ~~g~~~   86 (196)
T cd01852          81 APGPHA   86 (196)
T ss_pred             CCCCEE
Confidence            666653

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=3.4e-16  Score=100.66  Aligned_cols=79  Identities=15%  Similarity=-0.007  Sum_probs=59.9

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ..+......+|+.++|+||||||||||+|+|+|+..++.|.+...+...      .-.....++++|.+.+++-     .
T Consensus        19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v------~~p~~~~~~vFQ~~~LlPW-----~   87 (248)
T COG1116          19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV------TGPGPDIGYVFQEDALLPW-----L   87 (248)
T ss_pred             eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc------CCCCCCEEEEeccCcccch-----h
Confidence            3445566778899999999999999999999999999998644333221      1125678999999999887     6


Q ss_pred             HHHHHHHHhh
Q 038901           89 VGKEIVKCLG   98 (107)
Q Consensus        89 ~~~~~~~~~~   98 (107)
                      |+.+++.+..
T Consensus        88 Tv~~NV~l~l   97 (248)
T COG1116          88 TVLDNVALGL   97 (248)
T ss_pred             hHHhhheehh
Confidence            7777665543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=3.7e-16  Score=103.05  Aligned_cols=85  Identities=19%  Similarity=0.122  Sum_probs=67.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      ........|+.++|+||||||||||+++|+|++.++.|.+..+..............+++++|+|...++.+     +++
T Consensus        20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H-----mtV   94 (345)
T COG1118          20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH-----MTV   94 (345)
T ss_pred             cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhccc-----chH
Confidence            445555678999999999999999999999999999997665555333323233346789999999999998     899


Q ss_pred             HHHHHHhhcc
Q 038901           91 KEIVKCLGMA  100 (107)
Q Consensus        91 ~~~~~~~~~~  100 (107)
                      .+++.|-...
T Consensus        95 a~NIAFGl~~  104 (345)
T COG1118          95 ADNIAFGLKV  104 (345)
T ss_pred             Hhhhhhcccc
Confidence            9998886644

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.62  E-value=9.7e-17  Score=104.32  Aligned_cols=69  Identities=16%  Similarity=0.081  Sum_probs=51.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|++++|+||||||||||+++|+|+..+..|.+...+.........+. .+..+|++|.+.....
T Consensus        22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kel-Ak~ia~vpQ~~~~~~~   90 (258)
T COG1120          22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL-AKKLAYVPQSPSAPFG   90 (258)
T ss_pred             eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHH-hhhEEEeccCCCCCCC
Confidence            34455689999999999999999999999999999876655554443333332 5678999998755544

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.60  E-value=5e-17  Score=104.06  Aligned_cols=85  Identities=15%  Similarity=0.023  Sum_probs=64.8

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901            8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus         8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      ..........+|++++||||||||||||+|+|+|.+.|+.|.+...+............+.-++.-||.+-++..     
T Consensus        19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~-----   93 (250)
T COG0411          19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG-----   93 (250)
T ss_pred             EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC-----
Confidence            444556677889999999999999999999999999999996655444433333333334567888999999887     


Q ss_pred             HHHHHHHHHh
Q 038901           88 FVGKEIVKCL   97 (107)
Q Consensus        88 ~~~~~~~~~~   97 (107)
                      +++.|++...
T Consensus        94 lTVlENv~va  103 (250)
T COG0411          94 LTVLENVAVG  103 (250)
T ss_pred             CcHHHHHHHH
Confidence            8888887654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.58  E-value=4.1e-16  Score=100.75  Aligned_cols=83  Identities=18%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|+.++|+|||||||||+++.|.++..+++|.+...+.........+. ++.++|++|.-+++++     +++
T Consensus        19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L-Rr~IGYviQqigLFPh-----~Tv   92 (309)
T COG1125          19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL-RRKIGYVIQQIGLFPH-----LTV   92 (309)
T ss_pred             eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH-HHhhhhhhhhcccCCC-----ccH
Confidence            3344556789999999999999999999999999999977766666555444444 6889999999999998     888


Q ss_pred             HHHHHHhhc
Q 038901           91 KEIVKCLGM   99 (107)
Q Consensus        91 ~~~~~~~~~   99 (107)
                      .+++..+-.
T Consensus        93 ~eNIa~VP~  101 (309)
T COG1125          93 AENIATVPK  101 (309)
T ss_pred             HHHHHhhhh
Confidence            888766543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.58  E-value=4.5e-16  Score=97.61  Aligned_cols=90  Identities=13%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~   85 (107)
                      ++..++...+.++|++++|+|+|||||||+++.|..++.|+.|.+....-.... .... .+++++.++..-+++..   
T Consensus        15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~-vrr~IGVl~~e~glY~R---   89 (245)
T COG4555          15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSF-VRRKIGVLFGERGLYAR---   89 (245)
T ss_pred             HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHH-HhhhcceecCCcChhhh---
Confidence            345667788889999999999999999999999999999999954432222211 2222 25788999998899887   


Q ss_pred             chHHHHHHHHHhhccCC
Q 038901           86 SEFVGKEIVKCLGMAKD  102 (107)
Q Consensus        86 ~~~~~~~~~~~~~~~~~  102 (107)
                        ++.+|++.++...+.
T Consensus        90 --lT~rEnl~~Fa~L~~  104 (245)
T COG4555          90 --LTARENLKYFARLNG  104 (245)
T ss_pred             --hhHHHHHHHHHHHhh
Confidence              999999999887653

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.57  E-value=2.7e-15  Score=100.40  Aligned_cols=83  Identities=20%  Similarity=0.064  Sum_probs=60.3

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+||||||||||+++|+|+..++.|.+...+....... .. .++.+++++|.+.+++.     .++
T Consensus        25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~-~~~~ig~v~q~~~~~~~-----~tv   97 (306)
T PRK13537         25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RH-ARQRVGVVPQFDNLDPD-----FTV   97 (306)
T ss_pred             cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HH-HHhcEEEEeccCcCCCC-----CcH
Confidence            344555678999999999999999999999999999885443332211111 11 24679999999999876     677


Q ss_pred             HHHHHHhhcc
Q 038901           91 KEIVKCLGMA  100 (107)
Q Consensus        91 ~~~~~~~~~~  100 (107)
                      .+++.+....
T Consensus        98 ~e~l~~~~~~  107 (306)
T PRK13537         98 RENLLVFGRY  107 (306)
T ss_pred             HHHHHHHHHH
Confidence            8887765543

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.55  E-value=4.1e-15  Score=95.21  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=53.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+................+..+++++|.+.+++.     .+..+
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t~~~   94 (222)
T cd03224          20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE-----LTVEE   94 (222)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC-----CcHHH
Confidence            3455678999999999999999999999999998885443332111111101113458899999988765     45555


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        95 ~l~~   98 (222)
T cd03224          95 NLLL   98 (222)
T ss_pred             HHHH
Confidence            5543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.55  E-value=6e-15  Score=99.96  Aligned_cols=80  Identities=20%  Similarity=0.119  Sum_probs=58.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+...+....... .. .+..+++++|.+.+++.     .++.+
T Consensus        61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~-~~~~ig~v~q~~~~~~~-----~tv~e  133 (340)
T PRK13536         61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RL-ARARIGVVPQFDNLDLE-----FTVRE  133 (340)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HH-HhccEEEEeCCccCCCC-----CcHHH
Confidence            3455678999999999999999999999999999885543332211111 11 24678999999998876     67777


Q ss_pred             HHHHhhc
Q 038901           93 IVKCLGM   99 (107)
Q Consensus        93 ~~~~~~~   99 (107)
                      ++.++..
T Consensus       134 ~l~~~~~  140 (340)
T PRK13536        134 NLLVFGR  140 (340)
T ss_pred             HHHHHHH
Confidence            7765443

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.55  E-value=1.8e-15  Score=97.32  Aligned_cols=87  Identities=17%  Similarity=0.082  Sum_probs=69.3

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901            8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus         8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      .........++|++++++|+|||||||++++|+|++.++.|.+...+.....    . ..++++|++..-|+++.     
T Consensus        17 av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~-~~~rIGyLPEERGLy~k-----   86 (300)
T COG4152          17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----E-IKNRIGYLPEERGLYPK-----   86 (300)
T ss_pred             eecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----h-hhhhcccChhhhccCcc-----
Confidence            4556677788899999999999999999999999999999865544433221    1 24789999999999987     


Q ss_pred             HHHHHHHHHhhccCCCC
Q 038901           88 FVGKEIVKCLGMAKDGI  104 (107)
Q Consensus        88 ~~~~~~~~~~~~~~~~~  104 (107)
                      +++.+-+.|++.....|
T Consensus        87 ~tv~dql~yla~LkGm~  103 (300)
T COG4152          87 MTVEDQLKYLAELKGMP  103 (300)
T ss_pred             CcHHHHHHHHHHhcCCc
Confidence            88888888887765544

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.55  E-value=4.1e-15  Score=96.04  Aligned_cols=80  Identities=16%  Similarity=0.064  Sum_probs=54.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+................+..+++++|.+.+++.     .++.
T Consensus        19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~tv~   93 (236)
T cd03219          19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE-----LTVL   93 (236)
T ss_pred             ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC-----CCHH
Confidence            34455678999999999999999999999999988885443332211111001112457899999988765     4555


Q ss_pred             HHHHH
Q 038901           92 EIVKC   96 (107)
Q Consensus        92 ~~~~~   96 (107)
                      +++.+
T Consensus        94 ~~l~~   98 (236)
T cd03219          94 ENVMV   98 (236)
T ss_pred             HHHHH
Confidence            55544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.55  E-value=2.2e-15  Score=93.29  Aligned_cols=76  Identities=17%  Similarity=0.131  Sum_probs=58.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      ......+++++|+||||||||||+|.|+|+..|.+|.+............   .++...+++|.-.+|.+     .++++
T Consensus        19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVSmlFQEnNLFaH-----LtV~q   90 (231)
T COG3840          19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---AERPVSMLFQENNLFAH-----LTVAQ   90 (231)
T ss_pred             EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---ccCChhhhhhccccchh-----hhhhh
Confidence            44566789999999999999999999999999999965544443332222   25678899999999987     77777


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        91 NigL   94 (231)
T COG3840          91 NIGL   94 (231)
T ss_pred             hhcc
Confidence            7543

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.54  E-value=6.8e-15  Score=100.14  Aligned_cols=78  Identities=18%  Similarity=0.112  Sum_probs=58.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+...........   ..++.+++++|.+.+++.     +++.+
T Consensus        24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~---~~~r~ig~v~Q~~~lfp~-----~tv~e   95 (353)
T TIGR03265        24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP---PQKRDYGIVFQSYALFPN-----LTVAD   95 (353)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCcccCCC-----CcHHH
Confidence            4445678999999999999999999999999999886554433221111   124679999999999987     67777


Q ss_pred             HHHHhh
Q 038901           93 IVKCLG   98 (107)
Q Consensus        93 ~~~~~~   98 (107)
                      ++.+..
T Consensus        96 Ni~~~~  101 (353)
T TIGR03265        96 NIAYGL  101 (353)
T ss_pred             HHHHHH
Confidence            776643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.54  E-value=8.1e-15  Score=94.44  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=54.5

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+|+||||||||+++|+|+..+.+|.+...+............+...++++|.+.+++.     .++
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv   92 (232)
T cd03218          18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK-----LTV   92 (232)
T ss_pred             cceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc-----CcH
Confidence            334455678999999999999999999999999998885443332211111101112457899999888765     455


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        93 ~~~l~~   98 (232)
T cd03218          93 EENILA   98 (232)
T ss_pred             HHHHHH
Confidence            555544

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=1.2e-15  Score=100.74  Aligned_cols=90  Identities=10%  Similarity=-0.097  Sum_probs=67.4

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~   83 (107)
                      +...........+|++++|||.||||||||+++|.++..|++|.+...+..........  ..++++++++|.+.+... 
T Consensus        19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss-   97 (339)
T COG1135          19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS-   97 (339)
T ss_pred             eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc-
Confidence            34455566777889999999999999999999999999999997655554333222211  125789999999999987 


Q ss_pred             CCchHHHHHHHHHhhcc
Q 038901           84 AGSEFVGKEIVKCLGMA  100 (107)
Q Consensus        84 ~~~~~~~~~~~~~~~~~  100 (107)
                          .|+.+++.+-...
T Consensus        98 ----rTV~~NvA~PLei  110 (339)
T COG1135          98 ----RTVFENVAFPLEL  110 (339)
T ss_pred             ----chHHhhhhhhHhh
Confidence                6777777665443

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=6.6e-15  Score=100.30  Aligned_cols=78  Identities=18%  Similarity=0.167  Sum_probs=58.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+||||||||||+++|+|+..+++|.+...........   ..++.++|++|.+.+++.     +++.
T Consensus        23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~v~Q~~~lfp~-----~tv~   94 (356)
T PRK11650         23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE---PADRDIAMVFQNYALYPH-----MSVR   94 (356)
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCccccCC-----CCHH
Confidence            34455678999999999999999999999999999886544333221111   123679999999999987     6777


Q ss_pred             HHHHHh
Q 038901           92 EIVKCL   97 (107)
Q Consensus        92 ~~~~~~   97 (107)
                      +++.+.
T Consensus        95 eNi~~~  100 (356)
T PRK11650         95 ENMAYG  100 (356)
T ss_pred             HHHHhH
Confidence            777654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.54  E-value=4.7e-15  Score=99.04  Aligned_cols=80  Identities=13%  Similarity=0.100  Sum_probs=57.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+||||||||||+++|+|+..+++|.+...+..... ....+ +..+++++|.+.+++.     .++.
T Consensus        12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~-~~~i~~~~q~~~~~~~-----~tv~   84 (302)
T TIGR01188        12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKV-RRSIGIVPQYASVDED-----LTGR   84 (302)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHH-HhhcEEecCCCCCCCC-----CcHH
Confidence            344556889999999999999999999999999998865433322111 10111 3568899999988876     6677


Q ss_pred             HHHHHhh
Q 038901           92 EIVKCLG   98 (107)
Q Consensus        92 ~~~~~~~   98 (107)
                      +++.+..
T Consensus        85 e~l~~~~   91 (302)
T TIGR01188        85 ENLEMMG   91 (302)
T ss_pred             HHHHHHH
Confidence            7766543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=8.2e-15  Score=99.68  Aligned_cols=78  Identities=17%  Similarity=0.093  Sum_probs=58.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+||||||||||+++|+|+..+++|.+..........   ...++.+++++|.+.+++.     +++.
T Consensus        25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~---~~~~r~ig~vfQ~~~lfp~-----~tv~   96 (351)
T PRK11432         25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR---SIQQRDICMVFQSYALFPH-----MSLG   96 (351)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---CHHHCCEEEEeCCcccCCC-----CCHH
Confidence            4455567899999999999999999999999999998654433322111   1124679999999999887     6677


Q ss_pred             HHHHHh
Q 038901           92 EIVKCL   97 (107)
Q Consensus        92 ~~~~~~   97 (107)
                      +++.+.
T Consensus        97 eNi~~~  102 (351)
T PRK11432         97 ENVGYG  102 (351)
T ss_pred             HHHHHH
Confidence            777654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.53  E-value=6.8e-15  Score=95.02  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=53.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+............  ....+..+++++|.+.+++.     .++
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv   94 (235)
T cd03261          20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS-----LTV   94 (235)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC-----CcH
Confidence            44556889999999999999999999999999988854433322111100  01113568899999888765     455


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        95 ~~~l~~  100 (235)
T cd03261          95 FENVAF  100 (235)
T ss_pred             HHHHHH
Confidence            555544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.53  E-value=9.7e-15  Score=93.28  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee---EEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+............   ..+.++..++++|.+.++..     .+
T Consensus        24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t   98 (218)
T cd03255          24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD-----LT   98 (218)
T ss_pred             EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC-----Cc
Confidence            44556789999999999999999999999999988854433322111110   00113468899999988765     45


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      +.+++.+
T Consensus        99 v~e~l~~  105 (218)
T cd03255          99 ALENVEL  105 (218)
T ss_pred             HHHHHHH
Confidence            5555443

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.3e-14  Score=94.15  Aligned_cols=82  Identities=16%  Similarity=-0.005  Sum_probs=53.4

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      .........+|+.++|+||||||||||+++|+|+..+..|.+.........    ...+.+++||+|...+...   --.
T Consensus        20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~----~~~~~~IgYVPQ~~~~d~~---fP~   92 (254)
T COG1121          20 LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK----RRKRLRIGYVPQKSSVDRS---FPI   92 (254)
T ss_pred             eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccc----cccCCeEEEcCcccccCCC---CCc
Confidence            344455566789999999999999999999999999998854432221111    1113678999996533211   014


Q ss_pred             HHHHHHHHh
Q 038901           89 VGKEIVKCL   97 (107)
Q Consensus        89 ~~~~~~~~~   97 (107)
                      ++++++..-
T Consensus        93 tV~d~V~~g  101 (254)
T COG1121          93 TVKDVVLLG  101 (254)
T ss_pred             CHHHHHHcc
Confidence            556655543

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.52  E-value=8.6e-15  Score=94.23  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.+|.+....................++++|.+.+++.     .+..
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~   93 (230)
T TIGR03410        19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR-----LTVE   93 (230)
T ss_pred             eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC-----CcHH
Confidence            34455678999999999999999999999999998885443322111111101113468899999988765     4555


Q ss_pred             HHHHH
Q 038901           92 EIVKC   96 (107)
Q Consensus        92 ~~~~~   96 (107)
                      +++.+
T Consensus        94 ~~l~~   98 (230)
T TIGR03410        94 ENLLT   98 (230)
T ss_pred             HHHHH
Confidence            55543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.52  E-value=1.4e-14  Score=94.03  Aligned_cols=78  Identities=19%  Similarity=0.118  Sum_probs=53.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+...+|++|.|.++..     .++.+
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~-----~tv~e   94 (242)
T cd03295          21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE-LRRKIGYVIQQIGLFPH-----MTVEE   94 (242)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHH-hhcceEEEccCccccCC-----CcHHH
Confidence            4455688999999999999999999999999998885443332211111111 13467899999988765     45555


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        95 ~l~~   98 (242)
T cd03295          95 NIAL   98 (242)
T ss_pred             HHHH
Confidence            5543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.52  E-value=1.7e-14  Score=92.32  Aligned_cols=78  Identities=15%  Similarity=0.098  Sum_probs=53.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+++|.+.......... ... ..+..++++|.+.++..     .++.
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~-~~~~i~~v~q~~~~~~~-----~tv~   93 (220)
T cd03263          21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKA-ARQSLGYCPQFDALFDE-----LTVR   93 (220)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHH-HhhhEEEecCcCCcccc-----CCHH
Confidence            3445567899999999999999999999999999888544332221111 111 13568899999888754     4555


Q ss_pred             HHHHH
Q 038901           92 EIVKC   96 (107)
Q Consensus        92 ~~~~~   96 (107)
                      +++.+
T Consensus        94 ~~l~~   98 (220)
T cd03263          94 EHLRF   98 (220)
T ss_pred             HHHHH
Confidence            55544

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.51  E-value=2e-14  Score=97.92  Aligned_cols=77  Identities=19%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+..........   ...++.++|++|.+.+++.     +++.+
T Consensus        22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---~~~~r~i~~v~Q~~~l~p~-----~tv~e   93 (353)
T PRK10851         22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL---HARDRKVGFVFQHYALFRH-----MTVFD   93 (353)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---CHHHCCEEEEecCcccCCC-----CcHHH
Confidence            344567899999999999999999999999999988554333222111   1123578999999999876     66777


Q ss_pred             HHHHh
Q 038901           93 IVKCL   97 (107)
Q Consensus        93 ~~~~~   97 (107)
                      ++.+.
T Consensus        94 ni~~~   98 (353)
T PRK10851         94 NIAFG   98 (353)
T ss_pred             HHHhh
Confidence            77654

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.51  E-value=1.5e-14  Score=96.65  Aligned_cols=80  Identities=16%  Similarity=0.106  Sum_probs=57.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+...+....... .. .++..++++|.+.+++.     .++.+
T Consensus        22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~-~~-~~~~ig~~~q~~~l~~~-----~tv~e   94 (301)
T TIGR03522        22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP-KE-VQRNIGYLPEHNPLYLD-----MYVRE   94 (301)
T ss_pred             EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh-HH-HHhceEEecCCCCCCCC-----CcHHH
Confidence            3445678999999999999999999999999999886543332211111 11 24568999999998876     66777


Q ss_pred             HHHHhhc
Q 038901           93 IVKCLGM   99 (107)
Q Consensus        93 ~~~~~~~   99 (107)
                      ++.+...
T Consensus        95 ~l~~~~~  101 (301)
T TIGR03522        95 YLQFIAG  101 (301)
T ss_pred             HHHHHHH
Confidence            7665443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.51  E-value=1.6e-14  Score=99.03  Aligned_cols=78  Identities=19%  Similarity=0.113  Sum_probs=57.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+||||||||||+++|+|+..++.|.+..........   ...++.+++++|.+.+++.     +++.
T Consensus        33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~---~~~~r~ig~vfQ~~~lfp~-----ltv~  104 (375)
T PRK09452         33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV---PAENRHVNTVFQSYALFPH-----MTVF  104 (375)
T ss_pred             eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---CHHHCCEEEEecCcccCCC-----CCHH
Confidence            3445567899999999999999999999999999988654433322111   1124679999999999887     6667


Q ss_pred             HHHHHh
Q 038901           92 EIVKCL   97 (107)
Q Consensus        92 ~~~~~~   97 (107)
                      +++.+.
T Consensus       105 eNi~~~  110 (375)
T PRK09452        105 ENVAFG  110 (375)
T ss_pred             HHHHHH
Confidence            776653

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=1.8e-14  Score=98.76  Aligned_cols=77  Identities=14%  Similarity=0.064  Sum_probs=58.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+...........   ..++.++|++|.+.+++.     +++.+
T Consensus        39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~vfQ~~~lfp~-----ltv~e  110 (377)
T PRK11607         39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP---PYQRPINMMFQSYALFPH-----MTVEQ  110 (377)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCCccCCC-----CCHHH
Confidence            4455678999999999999999999999999999886544333221111   124679999999999987     67777


Q ss_pred             HHHHh
Q 038901           93 IVKCL   97 (107)
Q Consensus        93 ~~~~~   97 (107)
                      ++.+.
T Consensus       111 Ni~~~  115 (377)
T PRK11607        111 NIAFG  115 (377)
T ss_pred             HHHHH
Confidence            77654

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.51  E-value=1.1e-14  Score=93.04  Aligned_cols=79  Identities=16%  Similarity=0.075  Sum_probs=52.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+..............  ..++.+++++|.+.++..     .++
T Consensus        23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv   97 (216)
T TIGR00960        23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD-----RTV   97 (216)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc-----ccH
Confidence            3455678999999999999999999999999988885443332211100000  013468899999887765     445


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        98 ~e~l~~  103 (216)
T TIGR00960        98 YDNVAF  103 (216)
T ss_pred             HHHHHH
Confidence            555443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.51  E-value=2.3e-14  Score=91.31  Aligned_cols=68  Identities=16%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+...........  . .+...++++|.+.++..
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~-~~~~i~~v~q~~~~~~~   86 (213)
T cd03259          19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--P-ERRNIGMVFQDYALFPH   86 (213)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--h-hhccEEEEcCchhhccC
Confidence            34455678999999999999999999999999998885443322211111  1 13568899999887754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.51  E-value=3.3e-14  Score=92.07  Aligned_cols=75  Identities=20%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+...........   ..+..+++++|.|.++..     .++.+
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---~~~~~i~~v~q~~~~~~~-----~tv~e   93 (239)
T cd03296          22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP---VQERNVGFVFQHYALFRH-----MTVFD   93 (239)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC---ccccceEEEecCCcccCC-----CCHHH
Confidence            4455678999999999999999999999999988885443332211111   113568899999888754     44455


Q ss_pred             HHH
Q 038901           93 IVK   95 (107)
Q Consensus        93 ~~~   95 (107)
                      ++.
T Consensus        94 ~l~   96 (239)
T cd03296          94 NVA   96 (239)
T ss_pred             HHh
Confidence            544

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.51  E-value=2.8e-14  Score=90.78  Aligned_cols=78  Identities=17%  Similarity=0.105  Sum_probs=54.5

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+...........   ..++..++++|.+.+++.     .++
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~---~~~~~i~~~~q~~~~~~~-----~tv   87 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP---PADRPVSMLFQENNLFAH-----LTV   87 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC---HhHccEEEEecccccCCC-----CcH
Confidence            344555688999999999999999999999999998885433322111111   113568899999988765     455


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        88 ~enl~~   93 (211)
T cd03298          88 EQNVGL   93 (211)
T ss_pred             HHHHhc
Confidence            565543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.50  E-value=1.3e-14  Score=98.93  Aligned_cols=81  Identities=14%  Similarity=0.029  Sum_probs=58.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+...+..........   ..++.++|++|.+.+++.     .
T Consensus        12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~-----~   86 (363)
T TIGR01186        12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH-----M   86 (363)
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC-----C
Confidence            34455678999999999999999999999999999986544443222111100   014579999999999987     5


Q ss_pred             HHHHHHHHh
Q 038901           89 VGKEIVKCL   97 (107)
Q Consensus        89 ~~~~~~~~~   97 (107)
                      ++.+++.+.
T Consensus        87 TV~eNi~~~   95 (363)
T TIGR01186        87 TILQNTSLG   95 (363)
T ss_pred             CHHHHHHHH
Confidence            666666543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.50  E-value=2.4e-14  Score=91.09  Aligned_cols=74  Identities=16%  Similarity=0.092  Sum_probs=52.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.........    . .+...++++|.+.+++.     .++.+
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~-~~~~i~~~~q~~~~~~~-----~tv~e   89 (210)
T cd03269          20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----A-ARNRIGYLPEERGLYPK-----MKVID   89 (210)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----H-HHccEEEeccCCcCCcC-----CcHHH
Confidence            34456789999999999999999999999998888854332221110    1 13568899999888765     45555


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        90 ~l~~   93 (210)
T cd03269          90 QLVY   93 (210)
T ss_pred             HHHH
Confidence            5544

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.50  E-value=2.6e-14  Score=95.52  Aligned_cols=79  Identities=18%  Similarity=0.063  Sum_probs=55.3

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+|+||||||||+++|+|+..+++|.+...+..... .. ...+..+++++|.+.+++.     .++
T Consensus        22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~v~q~~~~~~~-----~tv   94 (303)
T TIGR01288        22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RA-RLARVAIGVVPQFDNLDPE-----FTV   94 (303)
T ss_pred             ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-cH-HHHhhcEEEEeccccCCcC-----CcH
Confidence            3345566889999999999999999999999999988854433321111 11 1114568999999988765     556


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        95 ~e~l~~  100 (303)
T TIGR01288        95 RENLLV  100 (303)
T ss_pred             HHHHHH
Confidence            666554

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.50  E-value=2.3e-14  Score=91.60  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+......... .... .++.+++++|.|.+++.     .++.+
T Consensus        25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~-~~~~i~~~~q~~~~~~~-----~tv~e   97 (218)
T cd03266          25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAE-ARRRLGFVSDSTGLYDR-----LTARE   97 (218)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHH-HHhhEEEecCCcccCcC-----CCHHH
Confidence            34456789999999999999999999999999988854433322111 1111 13568899999988765     45556


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        98 ~l~~  101 (218)
T cd03266          98 NLEY  101 (218)
T ss_pred             HHHH
Confidence            5544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.50  E-value=2.8e-14  Score=97.67  Aligned_cols=77  Identities=18%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+...........   ..++.++|++|.+.+++.     .++.+
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~---~~~~~i~~v~Q~~~l~~~-----~tv~e   94 (369)
T PRK11000         23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP---PAERGVGMVFQSYALYPH-----LSVAE   94 (369)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC---HhHCCEEEEeCCcccCCC-----CCHHH
Confidence            3455678999999999999999999999999998885443332211111   113568999999988876     56666


Q ss_pred             HHHHh
Q 038901           93 IVKCL   97 (107)
Q Consensus        93 ~~~~~   97 (107)
                      ++.+.
T Consensus        95 ni~~~   99 (369)
T PRK11000         95 NMSFG   99 (369)
T ss_pred             HHHhH
Confidence            66543

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.50  E-value=4.7e-14  Score=90.32  Aligned_cols=73  Identities=16%  Similarity=0.062  Sum_probs=52.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+........     . .....++++|.+.+++.     .+..
T Consensus        23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-----~-~~~~i~~v~q~~~~~~~-----~tv~   91 (220)
T cd03293          23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-----G-PGPDRGYVFQQDALLPW-----LTVL   91 (220)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc-----c-ccCcEEEEecccccccC-----CCHH
Confidence            34455678999999999999999999999999888885433222111     1 14568899999887764     4445


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus        92 e~l~   95 (220)
T cd03293          92 DNVA   95 (220)
T ss_pred             HHHH
Confidence            5544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.50  E-value=2e-14  Score=97.51  Aligned_cols=83  Identities=10%  Similarity=-0.062  Sum_probs=58.1

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCc
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      .........+|++++|+|+||||||||+++|+|+..++.|.+..............  ..++.+++++|.+.+++.    
T Consensus        21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~----   96 (343)
T TIGR02314        21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS----   96 (343)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc----
Confidence            33444556788999999999999999999999999999886544333221111100  114578999999988875    


Q ss_pred             hHHHHHHHHH
Q 038901           87 EFVGKEIVKC   96 (107)
Q Consensus        87 ~~~~~~~~~~   96 (107)
                       .++.+++.+
T Consensus        97 -~tv~eni~~  105 (343)
T TIGR02314        97 -RTVFGNVAL  105 (343)
T ss_pred             -CcHHHHHHH
Confidence             556666554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.50  E-value=1.9e-14  Score=93.29  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=54.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||+|||||+++|+|+..+.+|.+................+...++++|.+.+++.     .++.
T Consensus        21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~   95 (242)
T TIGR03411        21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN-----LTVF   95 (242)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC-----CCHH
Confidence            34455688999999999999999999999999998885443332211111001112458899999988765     4555


Q ss_pred             HHHHH
Q 038901           92 EIVKC   96 (107)
Q Consensus        92 ~~~~~   96 (107)
                      +++.+
T Consensus        96 ~nl~~  100 (242)
T TIGR03411        96 ENLEL  100 (242)
T ss_pred             HHHHH
Confidence            55543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.50  E-value=2.3e-14  Score=91.76  Aligned_cols=78  Identities=14%  Similarity=0.057  Sum_probs=52.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+++|.+......... .... .++..++++|.+.+++.     .++.
T Consensus        19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~-~~~~i~~~~q~~~~~~~-----~tv~   91 (220)
T cd03265          19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPRE-VRRRIGIVFQDLSVDDE-----LTGW   91 (220)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHH-HhhcEEEecCCcccccc-----CcHH
Confidence            344556789999999999999999999999999888854332221111 1111 13468899999887654     4444


Q ss_pred             HHHHH
Q 038901           92 EIVKC   96 (107)
Q Consensus        92 ~~~~~   96 (107)
                      +++.+
T Consensus        92 ~~l~~   96 (220)
T cd03265          92 ENLYI   96 (220)
T ss_pred             HHHHH
Confidence            54433

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=1.9e-14  Score=93.91  Aligned_cols=79  Identities=16%  Similarity=0.088  Sum_probs=52.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+..............+.+...++++|.|.+++.     .++.+
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~e   99 (255)
T PRK11300         25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE-----MTVIE   99 (255)
T ss_pred             eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC-----CcHHH
Confidence            3445678999999999999999999999999998885443332211111001112346788999888765     45555


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus       100 nl~~  103 (255)
T PRK11300        100 NLLV  103 (255)
T ss_pred             HHHH
Confidence            5543

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=2.1e-14  Score=92.66  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCCCCCCCCCchH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+.............   ...++.+++++|.+.+++.     .
T Consensus        28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~  102 (233)
T PRK11629         28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD-----F  102 (233)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC-----C
Confidence            3445567899999999999999999999999998888544333221111100   0112458899999887765     4


Q ss_pred             HHHHHHHH
Q 038901           89 VGKEIVKC   96 (107)
Q Consensus        89 ~~~~~~~~   96 (107)
                      +..+++.+
T Consensus       103 tv~e~l~~  110 (233)
T PRK11629        103 TALENVAM  110 (233)
T ss_pred             CHHHHHHH
Confidence            55555543

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.49  E-value=1.3e-14  Score=91.88  Aligned_cols=79  Identities=14%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee---EEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+............   ....++..++++|.+.+++.     .+
T Consensus        18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t   92 (206)
T TIGR03608        18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN-----ET   92 (206)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC-----Cc
Confidence            34455789999999999999999999999999988854333222110000   00113568899999988765     45


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      +.+++.+
T Consensus        93 ~~e~~~~   99 (206)
T TIGR03608        93 VEENLDL   99 (206)
T ss_pred             HHHHHHH
Confidence            5555443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.49  E-value=9.3e-15  Score=93.66  Aligned_cols=80  Identities=16%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||+|||||+++|.|+..|+.|.+...+.........+  ..+++.++++|.-.+|+.     +++
T Consensus        28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss-----ltV  102 (263)
T COG1127          28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS-----LTV  102 (263)
T ss_pred             eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc-----cch
Confidence            4455678999999999999999999999999999997665555443333211  124679999999999987     788


Q ss_pred             HHHHHHh
Q 038901           91 KEIVKCL   97 (107)
Q Consensus        91 ~~~~~~~   97 (107)
                      .|++.+-
T Consensus       103 ~eNVafp  109 (263)
T COG1127         103 FENVAFP  109 (263)
T ss_pred             hHhhhee
Confidence            8877663

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.49  E-value=2.2e-14  Score=91.37  Aligned_cols=80  Identities=14%  Similarity=0.025  Sum_probs=53.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+.............  ...++.+++++|.|.++..     .+
T Consensus        21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t   95 (214)
T TIGR02673        21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD-----RT   95 (214)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC-----Cc
Confidence            3445567899999999999999999999999988888543332211110000  0013568899999988764     44


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      +.+++.+
T Consensus        96 v~~~l~~  102 (214)
T TIGR02673        96 VYENVAL  102 (214)
T ss_pred             HHHHHHH
Confidence            4444443

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.49  E-value=3e-14  Score=97.27  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=57.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc--cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA--SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+||||||||||+++|+|+..++.  |.+..........   ...++.+++++|.+.+++.     +++
T Consensus        25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~---~~~~r~ig~vfQ~~~l~p~-----~tv   96 (362)
T TIGR03258        25 SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA---PPHKRGLALLFQNYALFPH-----LKV   96 (362)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC---CHHHCCEEEEECCcccCCC-----CcH
Confidence            34456789999999999999999999999999988  8544333221111   1124678999999999877     677


Q ss_pred             HHHHHHhh
Q 038901           91 KEIVKCLG   98 (107)
Q Consensus        91 ~~~~~~~~   98 (107)
                      .+++.+..
T Consensus        97 ~enl~~~l  104 (362)
T TIGR03258        97 EDNVAFGL  104 (362)
T ss_pred             HHHHHHHH
Confidence            77776543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.49  E-value=4.9e-14  Score=89.77  Aligned_cols=67  Identities=24%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+............   .+..+++++|.+.++..
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~   86 (213)
T cd03301          20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMVFQNYALYPH   86 (213)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---ccceEEEEecChhhccC
Confidence            34456789999999999999999999999999888854433322111111   13468899999887754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.49  E-value=2.1e-14  Score=91.87  Aligned_cols=79  Identities=15%  Similarity=0.134  Sum_probs=53.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+..............   +....+++++|.+.+++.     .
T Consensus        24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~   98 (221)
T TIGR02211        24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD-----F   98 (221)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC-----C
Confidence            34555688999999999999999999999999998885443332211111000   111458899999888765     4


Q ss_pred             HHHHHHH
Q 038901           89 VGKEIVK   95 (107)
Q Consensus        89 ~~~~~~~   95 (107)
                      ++.+++.
T Consensus        99 tv~~~l~  105 (221)
T TIGR02211        99 TALENVA  105 (221)
T ss_pred             cHHHHHH
Confidence            4555544

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.49  E-value=2.7e-14  Score=88.89  Aligned_cols=89  Identities=17%  Similarity=-0.007  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee--eEEeeCCcEEEEEeCCCCCCCCC
Q 038901            7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK--TTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus         7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      +.......+..+|+.+-|+||||||||||++.|++...++.|.+...........  .+.+.++++++|+|+.-+.+.  
T Consensus        16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~--   93 (223)
T COG2884          16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD--   93 (223)
T ss_pred             hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecccccc--
Confidence            3455566777789999999999999999999999999999996554444333222  344457899999999988876  


Q ss_pred             CchHHHHHHHHHhhcc
Q 038901           85 GSEFVGKEIVKCLGMA  100 (107)
Q Consensus        85 ~~~~~~~~~~~~~~~~  100 (107)
                         .++.+++.+....
T Consensus        94 ---~tvyeNVA~pL~v  106 (223)
T COG2884          94 ---RTVYENVALPLRV  106 (223)
T ss_pred             ---chHhhhhhhhhhc
Confidence               6777776665443

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=1.8e-14  Score=93.34  Aligned_cols=79  Identities=15%  Similarity=0.088  Sum_probs=53.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+................+..+++++|.+.++..     .++.+
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~e   97 (241)
T PRK10895         23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR-----LSVYD   97 (241)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc-----CcHHH
Confidence            4455678999999999999999999999999998885443332211111001113468899999887764     45555


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        98 nl~~  101 (241)
T PRK10895         98 NLMA  101 (241)
T ss_pred             HHhh
Confidence            5543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.49  E-value=2.5e-14  Score=91.53  Aligned_cols=81  Identities=16%  Similarity=0.031  Sum_probs=58.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      ...-.+|+.++|||+||||||||+++|.|+..+++|.+.............  ...+.++++++|.+.+.+.     .++
T Consensus        24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r-----~sv   98 (258)
T COG3638          24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR-----LSV   98 (258)
T ss_pred             eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc-----cHH
Confidence            345567899999999999999999999999999998554433322222211  1124689999999999877     666


Q ss_pred             HHHHHHhh
Q 038901           91 KEIVKCLG   98 (107)
Q Consensus        91 ~~~~~~~~   98 (107)
                      .+++.+-+
T Consensus        99 ~~NVl~gr  106 (258)
T COG3638          99 LENVLLGR  106 (258)
T ss_pred             HHHHHhhh
Confidence            66655433

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.49  E-value=3.4e-16  Score=98.01  Aligned_cols=85  Identities=14%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|||||||||.+.+++|+..+++|.+................+--++|++|.|.+|..     ++++
T Consensus        23 Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~-----LtV~   97 (243)
T COG1137          23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK-----LTVE   97 (243)
T ss_pred             eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhc-----CcHH
Confidence            34566788999999999999999999999999999996554444443333322224568999999999977     8888


Q ss_pred             HHHHHhhccC
Q 038901           92 EIVKCLGMAK  101 (107)
Q Consensus        92 ~~~~~~~~~~  101 (107)
                      +++.++....
T Consensus        98 dNi~~vlE~~  107 (243)
T COG1137          98 DNIMAVLEIR  107 (243)
T ss_pred             HHHHHHHhhh
Confidence            8888776543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.49  E-value=2.3e-14  Score=91.20  Aligned_cols=71  Identities=18%  Similarity=0.056  Sum_probs=49.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+.......... ......++.++|++|.+.+++.
T Consensus        19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   90 (213)
T cd03262          19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH   90 (213)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence            3445568899999999999999999999999998888544333211100 0001113568899999988764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.49  E-value=4.8e-14  Score=96.04  Aligned_cols=79  Identities=15%  Similarity=0.150  Sum_probs=55.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+...........   .....++.+++++|.+.+++.     .+
T Consensus        17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~t   91 (354)
T TIGR02142        17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPH-----LS   91 (354)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCC-----Cc
Confidence            3445678999999999999999999999999998885443332211100   011124568999999988876     56


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      +.+++.+
T Consensus        92 v~enl~~   98 (354)
T TIGR02142        92 VRGNLRY   98 (354)
T ss_pred             HHHHHHH
Confidence            6666554

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.49  E-value=2.6e-14  Score=92.20  Aligned_cols=79  Identities=15%  Similarity=0.046  Sum_probs=53.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+..............  ..+..+++++|.+.+++.     .+.
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t~   99 (233)
T cd03258          25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS-----RTV   99 (233)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC-----CcH
Confidence            3455678999999999999999999999999998885443332211110000  013468899999988765     455


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus       100 ~e~l~~  105 (233)
T cd03258         100 FENVAL  105 (233)
T ss_pred             HHHHHH
Confidence            555443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.49  E-value=5e-14  Score=92.78  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=53.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+...+..........   .....+++++|.+.+++.     .
T Consensus        43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~  117 (269)
T cd03294          43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH-----R  117 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC-----C
Confidence            34555678999999999999999999999999998885443332211111000   112468899999988765     4


Q ss_pred             HHHHHHHH
Q 038901           89 VGKEIVKC   96 (107)
Q Consensus        89 ~~~~~~~~   96 (107)
                      ++.+++.+
T Consensus       118 tv~e~l~~  125 (269)
T cd03294         118 TVLENVAF  125 (269)
T ss_pred             cHHHHHHH
Confidence            45555443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.49  E-value=3.8e-14  Score=90.02  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=53.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+..........  .. .++..++++|.+.+++.     .++.+
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~-~~~~i~~~~q~~~~~~~-----~tv~e   91 (208)
T cd03268          20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IE-ALRRIGALIEAPGFYPN-----LTARE   91 (208)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HH-HHhhEEEecCCCccCcc-----CcHHH
Confidence            344567899999999999999999999999998888544333211111  11 13568899999887765     55566


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        92 ~l~~   95 (208)
T cd03268          92 NLRL   95 (208)
T ss_pred             HHHH
Confidence            5544

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.48  E-value=3.5e-14  Score=91.05  Aligned_cols=70  Identities=19%  Similarity=0.069  Sum_probs=48.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+++|.+..............  ..++..+|++|.|.++..
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (222)
T PRK10908         22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD   93 (222)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence            3455688999999999999999999999999988885443332211111000  113568899999887554

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.48  E-value=2.4e-14  Score=98.85  Aligned_cols=78  Identities=18%  Similarity=0.128  Sum_probs=54.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+.+|.+............... .+.+++++|.+.++..     .++.+
T Consensus        23 s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~-~~~ig~v~q~~~l~~~-----~tv~e   96 (402)
T PRK09536         23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA-SRRVASVPQDTSLSFE-----FDVRQ   96 (402)
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH-hcceEEEccCCCCCCC-----CCHHH
Confidence            34456889999999999999999999999999998865443332211111111 3568899999887654     45555


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        97 ~v~~  100 (402)
T PRK09536         97 VVEM  100 (402)
T ss_pred             HHHh
Confidence            5544

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.48  E-value=3.8e-14  Score=91.01  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPG   78 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~   78 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+............  ....+...+|++|.|.
T Consensus        23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~   92 (228)
T cd03257          23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPM   92 (228)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCch
Confidence            3345556789999999999999999999999999988854433322111110  0112356889999983

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.48  E-value=3.1e-14  Score=88.57  Aligned_cols=70  Identities=19%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+........... .....+...++++|.|.++..
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   90 (178)
T cd03229          20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH   90 (178)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence            3455678999999999999999999999999988885443332211110 001124568899999987754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.48  E-value=2.6e-14  Score=90.94  Aligned_cols=65  Identities=15%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+.............. .+..+++++|.+.
T Consensus        21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~   85 (211)
T cd03225          21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKE-LRRKVGLVFQNPD   85 (211)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHH-HHhhceEEecChh
Confidence            3455678999999999999999999999999998885443332111111111 1356789999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=3.1e-14  Score=96.64  Aligned_cols=80  Identities=11%  Similarity=-0.037  Sum_probs=55.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      ......+|++++|+|+||||||||+++|+|+..+++|.+..............  ..++.+++++|.+.++..     .+
T Consensus        24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~-----~t   98 (343)
T PRK11153         24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS-----RT   98 (343)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC-----Cc
Confidence            34455688999999999999999999999999998885443332211111000  013568999999988765     45


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      +.+++.+
T Consensus        99 v~eni~~  105 (343)
T PRK11153         99 VFDNVAL  105 (343)
T ss_pred             HHHHHHH
Confidence            5555544

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.48  E-value=6.2e-14  Score=86.89  Aligned_cols=68  Identities=16%  Similarity=0.115  Sum_probs=48.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+........... .. .+...++++|.+.++..
T Consensus        20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~   87 (173)
T cd03230          20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EE-VKRRIGYLPEEPSLYEN   87 (173)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-Hh-hhccEEEEecCCccccC
Confidence            3455678999999999999999999999999888885433332211111 11 23568899999988765

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=2.7e-14  Score=92.35  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+...+............+...++++|.+.+++.
T Consensus        25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~   94 (237)
T PRK11614         25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR   94 (237)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence            3455678999999999999999999999999998885443332211111001113458899998887764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.48  E-value=1.6e-14  Score=102.55  Aligned_cols=67  Identities=18%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..-++|+.++|+|+||||||||++.|+|+..++.|.+..++...... ...+ ++.+++++|.|.+++.
T Consensus       356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~l-r~~i~~V~Q~~~lF~~  422 (529)
T TIGR02868       356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDEL-RRRISVFAQDAHLFDT  422 (529)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHH-HhheEEEccCcccccc
Confidence            44568999999999999999999999999999999765555443333 3232 5689999999999875

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.48  E-value=2.9e-14  Score=92.27  Aligned_cols=71  Identities=18%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+............  ....+..+++++|.+.++..
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   92 (241)
T cd03256          20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER   92 (241)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence            344556789999999999999999999999999888854433322111100  00113467899999887764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.48  E-value=9.2e-14  Score=88.61  Aligned_cols=76  Identities=16%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+...........  . .+...++++|.|.++..     .+..
T Consensus        17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~-~~~~i~~v~q~~~~~~~-----~t~~   88 (213)
T TIGR01277        17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--P-YQRPVSMLFQENNLFAH-----LTVR   88 (213)
T ss_pred             eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--h-hccceEEEeccCccCCC-----CcHH
Confidence            34455688999999999999999999999999999885443332211111  1 24568899999988765     4555


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus        89 en~~   92 (213)
T TIGR01277        89 QNIG   92 (213)
T ss_pred             HHHH
Confidence            5543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.48  E-value=2.7e-14  Score=90.97  Aligned_cols=79  Identities=15%  Similarity=0.050  Sum_probs=52.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+............  ....++.+++++|.+.+++.     .++
T Consensus        21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~t~   95 (214)
T cd03292          21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD-----RNV   95 (214)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC-----CcH
Confidence            34556789999999999999999999999999888854332221111000  00113468899999988765     444


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        96 ~~~l~~  101 (214)
T cd03292          96 YENVAF  101 (214)
T ss_pred             HHHHHH
Confidence            554443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.47  E-value=5e-14  Score=92.25  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+..............+ ...+++++|.+.++..     .++.+
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~-----~tv~e   95 (258)
T PRK13548         22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL-ARRRAVLPQHSSLSFP-----FTVEE   95 (258)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHh-hhheEEEccCCcCCCC-----CCHHH
Confidence            34556789999999999999999999999999988854433322111111111 2457899998877544     34555


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        96 ~l~~   99 (258)
T PRK13548         96 VVAM   99 (258)
T ss_pred             HHHh
Confidence            5443

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.47  E-value=3.5e-14  Score=90.33  Aligned_cols=74  Identities=12%  Similarity=0.074  Sum_probs=50.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~   94 (107)
                      ...+| +++|+|+||||||||+++|+|+..+..|.+........... .. .+..+++++|.+.++..     .++.+++
T Consensus        22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~-----~tv~~~l   93 (211)
T cd03264          22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QK-LRRRIGYLPQEFGVYPN-----FTVREFL   93 (211)
T ss_pred             EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HH-HHhheEEecCCCccccc-----CCHHHHH
Confidence            33457 99999999999999999999999998885433222111111 11 13568899999988765     4455554


Q ss_pred             HH
Q 038901           95 KC   96 (107)
Q Consensus        95 ~~   96 (107)
                      .+
T Consensus        94 ~~   95 (211)
T cd03264          94 DY   95 (211)
T ss_pred             HH
Confidence            43

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.47  E-value=4.5e-14  Score=91.50  Aligned_cols=72  Identities=13%  Similarity=0.099  Sum_probs=47.3

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .......+|++++|+|+||||||||+++|+|+.  .+..|.+................+...++++|.|.+++.
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   91 (243)
T TIGR01978        18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG   91 (243)
T ss_pred             ccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence            344556688999999999999999999999995  577775443332111111001112336788999887654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.47  E-value=8.7e-14  Score=87.83  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=52.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+........... .. .....+++++.+.+++.     .+..
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~-----~tv~   91 (198)
T TIGR01189        19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DE-PHRNILYLGHLPGLKPE-----LSAL   91 (198)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HH-hhhheEEeccCcccccC-----CcHH
Confidence            34455678999999999999999999999999988885443332211111 11 13467888888777654     4555


Q ss_pred             HHHHH
Q 038901           92 EIVKC   96 (107)
Q Consensus        92 ~~~~~   96 (107)
                      +++.+
T Consensus        92 ~~l~~   96 (198)
T TIGR01189        92 ENLHF   96 (198)
T ss_pred             HHHHH
Confidence            55443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=7.4e-14  Score=95.08  Aligned_cols=78  Identities=14%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+...........   .....++.+++++|.+.+++.     .+
T Consensus        18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~t   92 (352)
T PRK11144         18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPH-----YK   92 (352)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCC-----Cc
Confidence            3444678999999999999999999999999998885443332211100   011124578999999988876     45


Q ss_pred             HHHHHH
Q 038901           90 GKEIVK   95 (107)
Q Consensus        90 ~~~~~~   95 (107)
                      +.+++.
T Consensus        93 v~enl~   98 (352)
T PRK11144         93 VRGNLR   98 (352)
T ss_pred             HHHHHH
Confidence            555544

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.47  E-value=4.9e-14  Score=90.62  Aligned_cols=70  Identities=20%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+.............   ......+++++|.+.+++.
T Consensus        30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~  102 (228)
T PRK10584         30 ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT  102 (228)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence            344567899999999999999999999999999888544333221111100   0112458899999888764

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.47  E-value=2.2e-15  Score=92.32  Aligned_cols=70  Identities=17%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      .....+|+.++|.||+|||||||++.++.++.+++|.....+........-. .++++.|+.|+|.++...
T Consensus        23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea-~Rq~VsY~~Q~paLfg~t   92 (223)
T COG4619          23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA-YRQQVSYCAQTPALFGDT   92 (223)
T ss_pred             eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHH-HHHHHHHHHcCccccccc
Confidence            3455678999999999999999999999999999996554444444333323 367889999999998763

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=8.6e-14  Score=89.77  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=52.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.+|.+............   .....++++|.+.+++.     .++.
T Consensus        18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~-----~tv~   89 (232)
T PRK10771         18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---SRRPVSMLFQENNLFSH-----LTVA   89 (232)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---hhccEEEEecccccccC-----CcHH
Confidence            344556789999999999999999999999999988854433322111111   13468899999888765     4455


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus        90 e~l~   93 (232)
T PRK10771         90 QNIG   93 (232)
T ss_pred             HHHh
Confidence            5543

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.47  E-value=7.6e-14  Score=90.24  Aligned_cols=68  Identities=18%  Similarity=0.024  Sum_probs=48.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+............ .. .+..++++|.+.++..
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~-~~~i~~~~q~~~~~~~   88 (236)
T TIGR03864        21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AA-LARLGVVFQQPTLDLD   88 (236)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hh-hhhEEEeCCCCCCccc
Confidence            34556789999999999999999999999999988854433322111111 11 2468899999877654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.47  E-value=3e-14  Score=92.39  Aligned_cols=71  Identities=14%  Similarity=0.053  Sum_probs=48.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+.............  ...+...++++|.+.+++.
T Consensus        21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   93 (243)
T TIGR02315        21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER   93 (243)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence            3445567899999999999999999999999998888544333221110000  0013468899999887754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=4.9e-14  Score=97.21  Aligned_cols=80  Identities=10%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+..............   ..+..++|++|.+.+++.     .
T Consensus        47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~-----~  121 (400)
T PRK10070         47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH-----M  121 (400)
T ss_pred             EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC-----C
Confidence            34455678999999999999999999999999999886543332211111000   112468999999998876     5


Q ss_pred             HHHHHHHH
Q 038901           89 VGKEIVKC   96 (107)
Q Consensus        89 ~~~~~~~~   96 (107)
                      ++.+++.+
T Consensus       122 Tv~enl~~  129 (400)
T PRK10070        122 TVLDNTAF  129 (400)
T ss_pred             CHHHHHHH
Confidence            55665554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=4.6e-14  Score=92.70  Aligned_cols=78  Identities=12%  Similarity=0.051  Sum_probs=52.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+..............+ ...+++++|.+.++..     .++.
T Consensus        30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~-----~tv~  103 (265)
T PRK10575         30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF-ARKVAYLPQQLPAAEG-----MTVR  103 (265)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH-hhheEEeccCCCCCCC-----ccHH
Confidence            344556789999999999999999999999999888854433322111111111 3468899998777654     3444


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus       104 e~l~  107 (265)
T PRK10575        104 ELVA  107 (265)
T ss_pred             HHHH
Confidence            5443

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=1.4e-13  Score=90.07  Aligned_cols=65  Identities=18%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+...+....     . .....++++|.+.+++.
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~-----~-~~~~~~~v~q~~~~~~~   84 (255)
T PRK11248         20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE-----G-PGAERGVVFQNEGLLPW   84 (255)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-----C-CCCcEEEEeCCCccCCC
Confidence            34455678999999999999999999999999998885433222110     0 12347899999887764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.46  E-value=3.1e-14  Score=91.50  Aligned_cols=78  Identities=15%  Similarity=0.041  Sum_probs=51.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc-----cccccCCCCceeeEeeeee-EEeeCCcEEEEEeCCCCCCCCCCc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR-----AFKASAGSSGVTTTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~-----~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      .....+|++++|+|+||||||||+++|+|+.     .+..|.+............ ....++.+++++|.+.++ .    
T Consensus        20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~----   94 (227)
T cd03260          20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-P----   94 (227)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-c----
Confidence            3455678999999999999999999999999     7887754333322111000 011135688999998876 3    


Q ss_pred             hHHHHHHHHH
Q 038901           87 EFVGKEIVKC   96 (107)
Q Consensus        87 ~~~~~~~~~~   96 (107)
                       .++.+++.+
T Consensus        95 -~tv~e~l~~  103 (227)
T cd03260          95 -GSIYDNVAY  103 (227)
T ss_pred             -ccHHHHHHh
Confidence             455555443

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.46  E-value=1e-13  Score=90.80  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+.......     .. .+...++++|.+.+++.
T Consensus        32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~-~~~~i~~v~q~~~l~~~   95 (257)
T PRK11247         32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AE-AREDTRLMFQDARLLPW   95 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HH-hhCceEEEecCccCCCC
Confidence            445567899999999999999999999999998888543222110     01 13568899999888764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.46  E-value=1.1e-13  Score=87.68  Aligned_cols=78  Identities=12%  Similarity=-0.003  Sum_probs=52.9

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+|+||+|||||+++|+|+..+.+|.+.......... . ...+...++++|.+.++..     .+.
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~~~~~i~~~~q~~~~~~~-----~tv   90 (201)
T cd03231          18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-R-DSIARGLLYLGHAPGIKTT-----LSV   90 (201)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-c-HHhhhheEEeccccccCCC-----cCH
Confidence            33445568899999999999999999999999999888543332221111 1 1123568889988887654     444


Q ss_pred             HHHHH
Q 038901           91 KEIVK   95 (107)
Q Consensus        91 ~~~~~   95 (107)
                      .+++.
T Consensus        91 ~e~l~   95 (201)
T cd03231          91 LENLR   95 (201)
T ss_pred             HHHHH
Confidence            44443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.46  E-value=8.5e-14  Score=91.65  Aligned_cols=78  Identities=14%  Similarity=0.050  Sum_probs=52.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+............  ....+..+++++|.+.+++.     .++
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv  101 (269)
T PRK11831         27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD-----MNV  101 (269)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC-----CCH
Confidence            44556789999999999999999999999999888854433221111000  00013457899999888765     444


Q ss_pred             HHHHH
Q 038901           91 KEIVK   95 (107)
Q Consensus        91 ~~~~~   95 (107)
                      .+++.
T Consensus       102 ~enl~  106 (269)
T PRK11831        102 FDNVA  106 (269)
T ss_pred             HHHHH
Confidence            55543

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.45  E-value=6.2e-14  Score=87.50  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC---CCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP---GLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p---~~~~~~~~~~~~   89 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+................+...++++|.+   .+++.     .+
T Consensus        20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~-----~t   94 (182)
T cd03215          20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD-----LS   94 (182)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC-----Cc
Confidence            34456789999999999999999999999999988854433322111110011135688999885   35444     45


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      ..+++.+
T Consensus        95 ~~e~l~~  101 (182)
T cd03215          95 VAENIAL  101 (182)
T ss_pred             HHHHHHH
Confidence            5555543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.45  E-value=5.9e-14  Score=92.20  Aligned_cols=70  Identities=9%  Similarity=-0.082  Sum_probs=48.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+.............. ....++|++|.+.++..
T Consensus        26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~~   95 (265)
T PRK10253         26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE-VARRIGLLAQNATTPGD   95 (265)
T ss_pred             cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH-HhhheEEeeccCcCCCC
Confidence            34455678999999999999999999999999988885433222111111111 12468899999877654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.45  E-value=7.9e-14  Score=88.37  Aligned_cols=79  Identities=16%  Similarity=0.149  Sum_probs=54.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ......+|++++|+|+||||||||+++|+|+..   +.+|.+........... .. ..+..++++|.+.++..     .
T Consensus        26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~-----~   98 (202)
T cd03233          26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EK-YPGEIIYVSEEDVHFPT-----L   98 (202)
T ss_pred             EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hh-hcceEEEEecccccCCC-----C
Confidence            344556789999999999999999999999988   67775433222111111 11 24568899998887765     6


Q ss_pred             HHHHHHHHh
Q 038901           89 VGKEIVKCL   97 (107)
Q Consensus        89 ~~~~~~~~~   97 (107)
                      ++.+++.+.
T Consensus        99 tv~~~l~~~  107 (202)
T cd03233          99 TVRETLDFA  107 (202)
T ss_pred             cHHHHHhhh
Confidence            777776654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.45  E-value=6.7e-14  Score=90.66  Aligned_cols=78  Identities=19%  Similarity=0.108  Sum_probs=52.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+........... .....++.+++++|.+.++..     .++.
T Consensus        21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~tv~   95 (240)
T PRK09493         21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH-----LTAL   95 (240)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC-----CcHH
Confidence            4455678999999999999999999999999988885443332211100 001113468899999887764     4445


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus        96 ~~l~   99 (240)
T PRK09493         96 ENVM   99 (240)
T ss_pred             HHHH
Confidence            5443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.45  E-value=1.1e-13  Score=87.73  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=53.7

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+........... .. ..+..+++++.+.+++.     .++
T Consensus        19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~-----~tv   91 (204)
T PRK13538         19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DE-YHQDLLYLGHQPGIKTE-----LTA   91 (204)
T ss_pred             cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HH-hhhheEEeCCccccCcC-----CcH
Confidence            344556688999999999999999999999999998885443332211111 11 13567888888877654     455


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        92 ~e~l~~   97 (204)
T PRK13538         92 LENLRF   97 (204)
T ss_pred             HHHHHH
Confidence            555544

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.45  E-value=3.9e-14  Score=99.10  Aligned_cols=87  Identities=13%  Similarity=-0.034  Sum_probs=65.0

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~   85 (107)
                      +.......+...+|++.+|+|.||||||||+|+|+|.+.+++|.+...+.........+-...-+.+|+|.+.+.+.   
T Consensus        21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~---   97 (500)
T COG1129          21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN---   97 (500)
T ss_pred             ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC---
Confidence            34556667778899999999999999999999999999999996654443322111111123568899999999988   


Q ss_pred             chHHHHHHHHHh
Q 038901           86 SEFVGKEIVKCL   97 (107)
Q Consensus        86 ~~~~~~~~~~~~   97 (107)
                        +++.|++.+-
T Consensus        98 --LsVaeNifLg  107 (500)
T COG1129          98 --LSVAENIFLG  107 (500)
T ss_pred             --ccHHHHhhcc
Confidence              8888887543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.45  E-value=1.7e-13  Score=87.95  Aligned_cols=69  Identities=16%  Similarity=0.087  Sum_probs=49.4

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      .......+|++++|+|+||||||||.++|+|+..++.|.+...+.............+.+-+|+|+|.-
T Consensus        25 ~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~   93 (252)
T COG1124          25 NVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS   93 (252)
T ss_pred             ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCcc
Confidence            345566788999999999999999999999999999996554443222211111124567789999854

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=9.7e-14  Score=90.39  Aligned_cols=80  Identities=15%  Similarity=0.032  Sum_probs=52.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~   85 (107)
                      .......+|++++|+|+||||||||+++|+|+..+     ..|.+.............. .+..+++++|.|.++..   
T Consensus        21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~~~~~---   96 (250)
T PRK14247         21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE-LRRRVQMVFQIPNPIPN---   96 (250)
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH-HhccEEEEeccCccCCC---
Confidence            33445567899999999999999999999999864     4664333222111111111 13568899999886654   


Q ss_pred             chHHHHHHHHH
Q 038901           86 SEFVGKEIVKC   96 (107)
Q Consensus        86 ~~~~~~~~~~~   96 (107)
                        .++.+++.+
T Consensus        97 --~tv~enl~~  105 (250)
T PRK14247         97 --LSIFENVAL  105 (250)
T ss_pred             --CcHHHHHHH
Confidence              455555543

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.44  E-value=2.5e-14  Score=90.45  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=53.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||+|||||++.|+|...+++|....+..........+. .++...++|...+-..     .++.|
T Consensus        21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~l-A~~raVlpQ~s~laFp-----Ftv~e   94 (259)
T COG4559          21 SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL-ARHRAVLPQNSSLAFP-----FTVQE   94 (259)
T ss_pred             ceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHH-HHHhhhcccCcccccc-----eEHHH
Confidence            44556789999999999999999999999999999865544443332222221 2445556665544333     45666


Q ss_pred             HHHHhhc
Q 038901           93 IVKCLGM   99 (107)
Q Consensus        93 ~~~~~~~   99 (107)
                      ++++-+.
T Consensus        95 VV~mGr~  101 (259)
T COG4559          95 VVQMGRI  101 (259)
T ss_pred             HHHhccc
Confidence            6655443

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.44  E-value=9.9e-14  Score=89.20  Aligned_cols=68  Identities=18%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.............. ....+++++|.+.+++
T Consensus        27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~l~~   94 (225)
T PRK10247         27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-YRQQVSYCAQTPTLFG   94 (225)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH-HHhccEEEeccccccc
Confidence            3455678999999999999999999999999988885433322111111101 1356789999988764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.44  E-value=8.5e-14  Score=90.99  Aligned_cols=69  Identities=16%  Similarity=0.060  Sum_probs=47.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+.............. ..+.++|++|.+.++..
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~   89 (256)
T TIGR03873        21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA-RARRVALVEQDSDTAVP   89 (256)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHH-HhhheEEecccCccCCC
Confidence            3455678999999999999999999999999988885443332211111001 12457889998865543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=6.2e-14  Score=98.76  Aligned_cols=72  Identities=21%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+.....++|+.++|+|+||||||||++.|+|+..+..|.+..+...........| ++++.+|.|.|.++..
T Consensus       338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~-~k~i~~v~Q~p~lf~g  409 (559)
T COG4988         338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW-RKQISWVSQNPYLFAG  409 (559)
T ss_pred             CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH-HhHeeeeCCCCccccc
Confidence            44455667889999999999999999999999999999977766665555554444 6789999999999975

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.44  E-value=8e-14  Score=88.15  Aligned_cols=76  Identities=14%  Similarity=0.015  Sum_probs=51.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+......... .... .++.++++++.+.+++.     .++.+
T Consensus        21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~-~~~~i~~~~q~~~~~~~-----~tv~~   93 (200)
T PRK13540         21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCT-YQKQLCFVGHRSGINPY-----LTLRE   93 (200)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHH-HHhheEEeccccccCcC-----CCHHH
Confidence            34556789999999999999999999999999988854433222111 1111 13567889888877654     44455


Q ss_pred             HHH
Q 038901           93 IVK   95 (107)
Q Consensus        93 ~~~   95 (107)
                      ++.
T Consensus        94 ~~~   96 (200)
T PRK13540         94 NCL   96 (200)
T ss_pred             HHH
Confidence            444

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.44  E-value=9.3e-14  Score=88.08  Aligned_cols=63  Identities=11%  Similarity=0.081  Sum_probs=45.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+.........   .. .++.+++++|.|.
T Consensus        19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~-~~~~i~~~~q~~~   81 (205)
T cd03226          19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KE-RRKSIGYVMQDVD   81 (205)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HH-hhcceEEEecChh
Confidence            344556789999999999999999999999999988854332222111   11 2356889999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.44  E-value=2.2e-13  Score=86.98  Aligned_cols=66  Identities=14%  Similarity=0.117  Sum_probs=47.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.........   .. ..+..+++++.+.+++.
T Consensus        31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~---~~-~~~~i~~~~q~~~~~~~   96 (214)
T PRK13543         31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GD-RSRFMAYLGHLPGLKAD   96 (214)
T ss_pred             eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc---hh-hhhceEEeecCcccccC
Confidence            34456789999999999999999999999999988854433221111   01 12457888898887654

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.4e-13  Score=89.77  Aligned_cols=78  Identities=14%  Similarity=0.050  Sum_probs=51.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEe--eeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTC--EMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~--~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.     .|.+...+....  ...... .+..+++++|.+.+++.  
T Consensus        23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~-~~~~i~~~~q~~~~~~~--   99 (253)
T PRK14267         23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE-VRREVGMVFQYPNPFPH--   99 (253)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH-HhhceeEEecCCccCCC--
Confidence            34455678999999999999999999999998763     664332222111  001111 13568899999988765  


Q ss_pred             CchHHHHHHHH
Q 038901           85 GSEFVGKEIVK   95 (107)
Q Consensus        85 ~~~~~~~~~~~   95 (107)
                         .++.+++.
T Consensus       100 ---~tv~enl~  107 (253)
T PRK14267        100 ---LTIYDNVA  107 (253)
T ss_pred             ---CcHHHHHH
Confidence               44455544

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=7.8e-14  Score=91.13  Aligned_cols=69  Identities=10%  Similarity=-0.008  Sum_probs=47.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+.............. .....++++|.+.++..
T Consensus        22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~   90 (255)
T PRK11231         22 SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ-LARRLALLPQHHLTPEG   90 (255)
T ss_pred             eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHH-HhhheEEecccCCCCCC
Confidence            3445678999999999999999999999999888885433322111101001 13457889998876644

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.43  E-value=1.2e-13  Score=89.84  Aligned_cols=71  Identities=18%  Similarity=0.093  Sum_probs=49.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee-------EEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT-------TVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+............       ....+...++++|.+.+++.
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   99 (250)
T PRK11264         22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPH   99 (250)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCC
Confidence            344556789999999999999999999999999888854433322111000       00113468899999887764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=1e-13  Score=91.41  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=45.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+..............+ +..++|++|.|.
T Consensus        29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~-~~~i~~v~q~~~   93 (271)
T PRK13632         29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI-RKKIGIIFQNPD   93 (271)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH-hcceEEEEeCHH
Confidence            34556789999999999999999999999999988854433322111111111 356889999873

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.3e-13  Score=89.45  Aligned_cols=69  Identities=16%  Similarity=0.102  Sum_probs=48.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+.............. .+...++++|.+.+++
T Consensus        22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~~~q~~~~~~   90 (241)
T PRK14250         22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID-LRRKIGMVFQQPHLFE   90 (241)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHH-hhhcEEEEecCchhch
Confidence            34455678999999999999999999999999998885443332211111111 1356889999987764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=1.1e-13  Score=91.44  Aligned_cols=66  Identities=15%  Similarity=0.078  Sum_probs=46.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+...................+++++|.|.
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~   87 (274)
T PRK13644         22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPE   87 (274)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChh
Confidence            345567899999999999999999999999999888544333221111100111356889999885

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.43  E-value=7.1e-14  Score=98.89  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=51.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+................+..+++++|.+.++..     .++.+
T Consensus        24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv~e   98 (501)
T PRK10762         24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ-----LTIAE   98 (501)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC-----CcHHH
Confidence            4455678999999999999999999999999998885433222111000001113458899998877654     44555


Q ss_pred             HHH
Q 038901           93 IVK   95 (107)
Q Consensus        93 ~~~   95 (107)
                      ++.
T Consensus        99 ~l~  101 (501)
T PRK10762         99 NIF  101 (501)
T ss_pred             Hhh
Confidence            443

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.43  E-value=1.5e-13  Score=86.21  Aligned_cols=67  Identities=19%  Similarity=0.098  Sum_probs=45.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEeeCCcEEEEEeCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~   78 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+......... .......++.+++++|.|.
T Consensus        11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   78 (190)
T TIGR01166        11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD   78 (190)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence            344556789999999999999999999999999988854333221110 0000111346789999873

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.43  E-value=2.6e-13  Score=87.89  Aligned_cols=75  Identities=19%  Similarity=0.170  Sum_probs=52.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+|+||||||||+++|+|+..+..|.+..........   ...++..+++++.|.+++.     .+..++
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~---~~~~~~i~~~~q~~~~~~~-----~t~~en   92 (237)
T TIGR00968        21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV---HARDRKIGFVFQHYALFKH-----LTVRDN   92 (237)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC---ChhhcCEEEEecChhhccC-----CcHHHH
Confidence            34567899999999999999999999999998888543322221111   1113568899999988765     445555


Q ss_pred             HHH
Q 038901           94 VKC   96 (107)
Q Consensus        94 ~~~   96 (107)
                      +.+
T Consensus        93 l~~   95 (237)
T TIGR00968        93 IAF   95 (237)
T ss_pred             HHh
Confidence            543

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=8.5e-14  Score=92.13  Aligned_cols=65  Identities=22%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+...+........... .+.++|++|.|.
T Consensus        27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~-~~~i~~~~q~~~   91 (279)
T PRK13635         27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV-RRQVGMVFQNPD   91 (279)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH-hhheEEEEeCHH
Confidence            34556789999999999999999999999999998854433322111111111 356899999983

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=1.1e-13  Score=89.69  Aligned_cols=77  Identities=18%  Similarity=0.060  Sum_probs=52.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe-----eeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC-----EMKTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+........     ........+..+++++|.+.+++.     
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----   96 (242)
T PRK11124         22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPH-----   96 (242)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCC-----
Confidence            3455678999999999999999999999999988885443332210     000001113468899999988765     


Q ss_pred             HHHHHHH
Q 038901           88 FVGKEIV   94 (107)
Q Consensus        88 ~~~~~~~   94 (107)
                      .+..+++
T Consensus        97 ~tv~e~i  103 (242)
T PRK11124         97 LTVQQNL  103 (242)
T ss_pred             CcHHHHH
Confidence            4445544

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.43  E-value=2.3e-13  Score=87.50  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      .......+|++++|+|+||||||||+++|+|+..   +..|.+........   ... .+..+++++|.+.+++.     
T Consensus        25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~-~~~~i~~~~q~~~~~~~-----   95 (226)
T cd03234          25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQ-FQKCVAYVRQDDILLPG-----   95 (226)
T ss_pred             CceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHH-hcccEEEeCCCCccCcC-----
Confidence            3344556889999999999999999999999998   77774433222111   111 24568899999888765     


Q ss_pred             HHHHHHHHH
Q 038901           88 FVGKEIVKC   96 (107)
Q Consensus        88 ~~~~~~~~~   96 (107)
                      .++.+++.+
T Consensus        96 ~tv~enl~~  104 (226)
T cd03234          96 LTVRETLTY  104 (226)
T ss_pred             CcHHHHHHH
Confidence            566666654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.42  E-value=1.7e-13  Score=90.14  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      ........+|++++|+|+||||||||+++|+|+..+.+|.+........... .......+++++|.+.
T Consensus        30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~   97 (267)
T PRK15112         30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD-YSYRSQRIRMIFQDPS   97 (267)
T ss_pred             eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc-hhhHhccEEEEecCch
Confidence            3445666788999999999999999999999999999886443332211101 1111346889999875

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.42  E-value=2.4e-13  Score=87.73  Aligned_cols=72  Identities=18%  Similarity=0.118  Sum_probs=50.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+|+||||||||+++|+|+..+.+|.+.........     . ....++++|.+.+++.     .++.++
T Consensus         6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-----~-~~~~~~v~q~~~l~~~-----~tv~e~   74 (230)
T TIGR01184         6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-----P-GPDRMVVFQNYSLLPW-----LTVREN   74 (230)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-----C-ChhheEEecCcccCCC-----CCHHHH
Confidence            3445789999999999999999999999999988854332221110     0 1124788999888765     455555


Q ss_pred             HHH
Q 038901           94 VKC   96 (107)
Q Consensus        94 ~~~   96 (107)
                      +.+
T Consensus        75 l~~   77 (230)
T TIGR01184        75 IAL   77 (230)
T ss_pred             HHH
Confidence            543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.42  E-value=9.1e-14  Score=101.43  Aligned_cols=69  Identities=16%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.++++.|+|.+++.
T Consensus       473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l-r~~i~~v~Q~~~lf~g  541 (686)
T TIGR03797       473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV-RRQLGVVLQNGRLMSG  541 (686)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH-HhccEEEccCCccCcc
Confidence            34556789999999999999999999999999999976555544333332222 5779999999999875

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=7.4e-14  Score=92.42  Aligned_cols=65  Identities=17%  Similarity=0.089  Sum_probs=45.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.............. .++.+++++|.|.
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~   91 (279)
T PRK13650         27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWD-IRHKIGMVFQNPD   91 (279)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHH-HHhhceEEEcChH
Confidence            3455678999999999999999999999999999885443332211111111 1356889999873

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.42  E-value=3.2e-13  Score=87.40  Aligned_cols=68  Identities=13%  Similarity=0.047  Sum_probs=45.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEE-eCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVI-DTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~-d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+......... .... .....++++ +.+.++..
T Consensus        41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~~~~~~~~~~~~  109 (236)
T cd03267          41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKK-FLRRIGVVFGQKTQLWWD  109 (236)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchh-hcccEEEEcCCccccCCC
Confidence            34556789999999999999999999999999988854433322111 1111 134677776 55556543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.42  E-value=1.3e-13  Score=94.61  Aligned_cols=81  Identities=17%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee----Eeeeee---EEeeCCcEEEEEeCCCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT----TCEMKT---TVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~----~~~~~~---~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+......    ......   ....++.++|++|.+.+++.  
T Consensus        43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~--  120 (382)
T TIGR03415        43 ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPW--  120 (382)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCC--
Confidence            344556789999999999999999999999999998865443321    100000   01112568999999999876  


Q ss_pred             CchHHHHHHHHHh
Q 038901           85 GSEFVGKEIVKCL   97 (107)
Q Consensus        85 ~~~~~~~~~~~~~   97 (107)
                         .++.+++.+.
T Consensus       121 ---~Tv~eNi~~~  130 (382)
T TIGR03415       121 ---LTVEENVAFG  130 (382)
T ss_pred             ---CcHHHHHHHH
Confidence               5666666543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.42  E-value=5e-13  Score=84.67  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=50.4

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC-----CCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901            8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus         8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~-----~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ........-.++.+++||||||||||||+++|..+.....+.     +...+...... ......++++++|+|.|.-++
T Consensus        22 aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp  101 (253)
T COG1117          22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP  101 (253)
T ss_pred             hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC
Confidence            344455666778999999999999999999999988776542     11111111111 001112578999999999887


Q ss_pred             C
Q 038901           82 L   82 (107)
Q Consensus        82 ~   82 (107)
                      .
T Consensus       102 ~  102 (253)
T COG1117         102 M  102 (253)
T ss_pred             c
Confidence            5

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.42  E-value=1.7e-13  Score=89.41  Aligned_cols=70  Identities=16%  Similarity=0.145  Sum_probs=49.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee------------eEEeeCCcEEEEEeCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK------------TTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~v~d~p~~~   80 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+...........            .....++.+++++|.+.++
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~   99 (252)
T TIGR03005        20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLF   99 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccC
Confidence            4455688999999999999999999999999998885443332211100            0001135688999999887


Q ss_pred             CC
Q 038901           81 DL   82 (107)
Q Consensus        81 ~~   82 (107)
                      +.
T Consensus       100 ~~  101 (252)
T TIGR03005       100 PH  101 (252)
T ss_pred             CC
Confidence            64

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.42  E-value=1.1e-13  Score=98.15  Aligned_cols=71  Identities=20%  Similarity=0.141  Sum_probs=48.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+...+..........+.+..+++++|.+.+++.
T Consensus        30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~  100 (510)
T PRK15439         30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN  100 (510)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence            34445678999999999999999999999999998885443322111100001112357899999887765

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.42  E-value=3.3e-13  Score=86.07  Aligned_cols=71  Identities=18%  Similarity=0.125  Sum_probs=48.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .......+ ++++|+|+||||||||+++|+|+..+..|.+...........   .....++..++++|.+.+++.
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   89 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPH   89 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCC
Confidence            34455567 999999999999999999999999998885433332211000   000113568899999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.42  E-value=7.4e-14  Score=96.82  Aligned_cols=86  Identities=13%  Similarity=-0.058  Sum_probs=64.4

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901            7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus         7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      -.+....+...+|++-+|+|.||||||||+++|.|.+.|++|.+...+....-.....-.+.-+++|.|.+.+.+.    
T Consensus        18 ~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~----   93 (501)
T COG3845          18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT----   93 (501)
T ss_pred             EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc----
Confidence            3455566777889999999999999999999999999999997665444322222112124568999999999987    


Q ss_pred             hHHHHHHHHHh
Q 038901           87 EFVGKEIVKCL   97 (107)
Q Consensus        87 ~~~~~~~~~~~   97 (107)
                       .|+.|++-.-
T Consensus        94 -lTV~ENiiLg  103 (501)
T COG3845          94 -LTVAENIILG  103 (501)
T ss_pred             -cchhhhhhhc
Confidence             7777776543

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.41  E-value=1.2e-13  Score=88.50  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..+++|.+..............  ..+..+++++|.|.++..     .+.
T Consensus        25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-----~t~   99 (220)
T TIGR02982        25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF-----LTA   99 (220)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC-----CCH
Confidence            3445678999999999999999999999999998885433222111100000  113568899999988764     445


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus       100 ~~n~~~  105 (220)
T TIGR02982       100 RQNVQM  105 (220)
T ss_pred             HHHHHH
Confidence            555444

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.41  E-value=1.1e-13  Score=99.51  Aligned_cols=67  Identities=18%  Similarity=0.126  Sum_probs=51.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..-++|+.++|+|+||||||||++.|+|+. +..|.+..++..........+ ++.++++.|.|.+++.
T Consensus       371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~l-r~~i~~v~Q~~~LF~~  437 (588)
T PRK11174        371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW-RKHLSWVGQNPQLPHG  437 (588)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHH-HhheEEecCCCcCCCc
Confidence            344688999999999999999999999999 888865554443333222222 5679999999999875

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.41  E-value=2.8e-13  Score=85.38  Aligned_cols=74  Identities=15%  Similarity=-0.024  Sum_probs=48.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.........     .......++.+.+.++..     .+..+
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~-----~~~~~~~~~~~~~~~~~~-----~tv~~   89 (195)
T PRK13541         20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN-----IAKPYCTYIGHNLGLKLE-----MTVFE   89 (195)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccCh-----hhhhhEEeccCCcCCCcc-----CCHHH
Confidence            34456789999999999999999999999999988854332221110     012346677777766544     44444


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus        90 ~l~~   93 (195)
T PRK13541         90 NLKF   93 (195)
T ss_pred             HHHH
Confidence            4433

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.41  E-value=1.3e-13  Score=87.52  Aligned_cols=68  Identities=15%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+..+++++|.|.+++
T Consensus        28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~   95 (207)
T cd03369          28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED-LRSSLTIIPQDPTLFS   95 (207)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHH-HHhhEEEEecCCcccC
Confidence            3455678999999999999999999999999998885443332211111111 1356899999997764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.41  E-value=2.1e-13  Score=89.64  Aligned_cols=69  Identities=22%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPG   78 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~   78 (107)
                      ........+|++++|+|+||||||||+++|+|+..+.+|.+..............  ..++.+++++|.|.
T Consensus        28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~   98 (265)
T TIGR02769        28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSP   98 (265)
T ss_pred             eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChh
Confidence            3444556788999999999999999999999999998885543332211111000  01346889999873

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.41  E-value=1.2e-13  Score=97.93  Aligned_cols=71  Identities=13%  Similarity=0.069  Sum_probs=48.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+................+..+++++|.+.++..
T Consensus        24 vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~   94 (510)
T PRK09700         24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE   94 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence            34455678999999999999999999999999988885433322111100000112458899998877654

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.41  E-value=3.5e-13  Score=85.42  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=44.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .......+|++++|+|+||||||||+++|+|+..++.|.+..              ...++|++|.|.+++
T Consensus        23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~--------------~g~i~~~~q~~~l~~   79 (204)
T cd03250          23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV--------------PGSIAYVSQEPWIQN   79 (204)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEE--------------cCEEEEEecCchhcc
Confidence            334556678999999999999999999999999888874321              125677888877653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.41  E-value=5.1e-13  Score=85.68  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+........   ..  ..+..++++|.+.++..     .+..+
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~---~~--~~~~~~~~~q~~~~~~~-----~t~~~   89 (223)
T TIGR03740        20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT---RK--DLHKIGSLIESPPLYEN-----LTARE   89 (223)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc---cc--ccccEEEEcCCCCcccc-----CCHHH
Confidence            3445678999999999999999999999999988885433222111   01  12467889998877654     34555


Q ss_pred             HHH
Q 038901           93 IVK   95 (107)
Q Consensus        93 ~~~   95 (107)
                      ++.
T Consensus        90 ~~~   92 (223)
T TIGR03740        90 NLK   92 (223)
T ss_pred             HHH
Confidence            544

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.41  E-value=3.4e-13  Score=85.03  Aligned_cols=77  Identities=16%  Similarity=0.091  Sum_probs=54.3

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      .......+|++++|+|+||||||||+++|+|+.  .+..|.+.........   .. .+...++++|.+.++..     .
T Consensus        27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~-~~~~i~~~~q~~~~~~~-----~   97 (194)
T cd03213          27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS-FRKIIGYVPQDDILHPT-----L   97 (194)
T ss_pred             cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh-hhheEEEccCcccCCCC-----C
Confidence            344556678999999999999999999999999  8888854333222111   11 24568899999887765     5


Q ss_pred             HHHHHHHH
Q 038901           89 VGKEIVKC   96 (107)
Q Consensus        89 ~~~~~~~~   96 (107)
                      +..+++.+
T Consensus        98 t~~~~i~~  105 (194)
T cd03213          98 TVRETLMF  105 (194)
T ss_pred             cHHHHHHH
Confidence            56665544

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.41  E-value=1.4e-13  Score=99.04  Aligned_cols=69  Identities=19%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|+.++|+|+||||||||+++|+|+..|..|.+..++.......... .++.++++.|+|.+++.
T Consensus       361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~-l~~~i~~v~Q~~~lF~~  429 (592)
T PRK10790        361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSV-LRQGVAMVQQDPVVLAD  429 (592)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHH-HHhheEEEccCCccccc
Confidence            3455678999999999999999999999999999886554444333222222 25789999999999975

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.41  E-value=2.2e-13  Score=89.08  Aligned_cols=78  Identities=17%  Similarity=0.087  Sum_probs=52.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee------------eeEEeeCCcEEEEEeCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM------------KTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~------------~~~~~~~~~~~~v~d~p~~~   80 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+..........            ......++..+|++|.+.++
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~  104 (257)
T PRK10619         25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW  104 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccC
Confidence            344557899999999999999999999999998888544333221100            00011135689999999887


Q ss_pred             CCCCCchHHHHHHHH
Q 038901           81 DLSAGSEFVGKEIVK   95 (107)
Q Consensus        81 ~~~~~~~~~~~~~~~   95 (107)
                      +.     .++.+++.
T Consensus       105 ~~-----~sv~enl~  114 (257)
T PRK10619        105 SH-----MTVLENVM  114 (257)
T ss_pred             CC-----CcHHHHHH
Confidence            65     44444443

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.41  E-value=6.1e-13  Score=83.50  Aligned_cols=79  Identities=16%  Similarity=0.001  Sum_probs=58.4

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .+......+|+.++++||||||||||+|.++|+..|..|.+..+..      .+.-+....+.|+|.+.+.+-     .+
T Consensus        22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r------~i~gPgaergvVFQ~~~LlPW-----l~   90 (259)
T COG4525          22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR------RIEGPGAERGVVFQNEALLPW-----LN   90 (259)
T ss_pred             hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE------eccCCCccceeEeccCccchh-----hH
Confidence            3445566778999999999999999999999999998885432221      111124567899999999887     66


Q ss_pred             HHHHHHHhhc
Q 038901           90 GKEIVKCLGM   99 (107)
Q Consensus        90 ~~~~~~~~~~   99 (107)
                      ..++..+-..
T Consensus        91 ~~dNvafgL~  100 (259)
T COG4525          91 VIDNVAFGLQ  100 (259)
T ss_pred             HHHHHHHHHH
Confidence            7777666543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.41  E-value=4.8e-13  Score=86.33  Aligned_cols=67  Identities=18%  Similarity=0.138  Sum_probs=48.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||+|||||+++|+|...+..|.+............   .+...++++|.+.++..
T Consensus        20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~   86 (232)
T cd03300          20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP---HKRPVNTVFQNYALFPH   86 (232)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh---hhcceEEEecccccCCC
Confidence            34455789999999999999999999999999988854332221111111   13568899999988764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1.2e-13  Score=91.18  Aligned_cols=64  Identities=17%  Similarity=0.050  Sum_probs=45.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      ....+|++++|+|+||||||||+++|+|+..++.|.+.............. .+..++|++|.|.
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~   89 (274)
T PRK13647         26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW-VRSKVGLVFQDPD   89 (274)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHH-HHhhEEEEecChh
Confidence            445678999999999999999999999999998885443332211111111 1356889999873

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.41  E-value=3.2e-13  Score=85.85  Aligned_cols=75  Identities=13%  Similarity=-0.021  Sum_probs=50.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+........ ..  . .+...+++.+.+.++..     .+..
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~--~-~~~~~~~~~~~~~~~~~-----~tv~   91 (207)
T PRK13539         21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID-DP--D-VAEACHYLGHRNAMKPA-----LTVA   91 (207)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc-ch--h-hHhhcEEecCCCcCCCC-----CcHH
Confidence            34455678999999999999999999999999988885433322111 01  1 13456788777666544     4455


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus        92 ~~l~   95 (207)
T PRK13539         92 ENLE   95 (207)
T ss_pred             HHHH
Confidence            5443

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.41  E-value=4.2e-13  Score=85.80  Aligned_cols=68  Identities=19%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+|+||||||||+++|+|+..+..|.+...........   .....++..+|++|.|.+++
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   92 (218)
T cd03290          22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN   92 (218)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccc
Confidence            344578999999999999999999999999988885443332211110   00111346789999987764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1.5e-13  Score=90.48  Aligned_cols=65  Identities=14%  Similarity=0.149  Sum_probs=45.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+...+.......... .++.+++++|.|.
T Consensus        29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~   93 (269)
T PRK13648         29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK-LRKHIGIVFQNPD   93 (269)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHhheeEEEeChH
Confidence            3445688999999999999999999999999998885443332211111111 1346789999884

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.40  E-value=6.6e-13  Score=86.53  Aligned_cols=52  Identities=13%  Similarity=-0.023  Sum_probs=39.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ..+|++++|+|+||||||||+++|+|+..+..|.+...             ...+.+++|.+.+.
T Consensus        22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~-------------g~~i~~~~q~~~~~   73 (246)
T cd03237          22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE-------------LDTVSYKPQYIKAD   73 (246)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC-------------CceEEEecccccCC
Confidence            34789999999999999999999999999888743211             12466777776644

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.40  E-value=9.5e-14  Score=99.62  Aligned_cols=69  Identities=23%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|.|.+++.
T Consensus       363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i~~v~Q~~~lf~~  431 (582)
T PRK11176        363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL-RNQVALVSQNVHLFND  431 (582)
T ss_pred             eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHH-HhhceEEccCceeecc
Confidence            33445789999999999999999999999999999866554443332222222 4678999999998875

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=1.4e-13  Score=97.51  Aligned_cols=79  Identities=13%  Similarity=0.004  Sum_probs=51.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..+  ++|.+................+..+++++|.+.+++.     .++
T Consensus        25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv   99 (506)
T PRK13549         25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE-----LSV   99 (506)
T ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC-----CcH
Confidence            445567899999999999999999999999886  5665433222111100000113458899999877654     455


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus       100 ~e~l~~  105 (506)
T PRK13549        100 LENIFL  105 (506)
T ss_pred             HHHhhh
Confidence            555443

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.40  E-value=4.2e-13  Score=86.52  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+    ++|.+.........   .......+++++|.+.
T Consensus         6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~---~~~~~~~i~~~~q~~~   72 (230)
T TIGR02770         6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP---LSIRGRHIATIMQNPR   72 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh---hhhhhheeEEEecCch
Confidence            344567899999999999999999999999988    67754333222111   1111246889999985

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.40  E-value=1.7e-13  Score=97.01  Aligned_cols=71  Identities=17%  Similarity=0.052  Sum_probs=49.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+................+..++|++|.+.+++.
T Consensus        23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~   93 (501)
T PRK11288         23 ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE   93 (501)
T ss_pred             eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence            34455678999999999999999999999999998885443222111000001113568899999877664

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.40  E-value=1.5e-13  Score=88.72  Aligned_cols=68  Identities=15%  Similarity=0.114  Sum_probs=47.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.............. .+...+|+++.+.+++
T Consensus        21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~   88 (236)
T cd03253          21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDS-LRRAIGVVPQDTVLFN   88 (236)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHH-HHhhEEEECCCChhhc
Confidence            3445678999999999999999999999999988885433222111111101 1345788999887764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.40  E-value=2.6e-13  Score=86.48  Aligned_cols=62  Identities=15%  Similarity=0.067  Sum_probs=45.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+........     . .+..+++++|.+.+
T Consensus        18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~-~~~~i~~v~q~~~~   79 (213)
T cd03235          18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----K-ERKRIGYVPQRRSI   79 (213)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----H-HHhheEEecccccc
Confidence            34455678999999999999999999999999988885433222110     1 13567888888876

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.40  E-value=1.2e-13  Score=89.05  Aligned_cols=68  Identities=21%  Similarity=0.104  Sum_probs=46.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.............. .++.+++++|.+.+++
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~   89 (234)
T cd03251          22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAS-LRRQIGLVSQDVFLFN   89 (234)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHH-HHhhEEEeCCCCeecc
Confidence            3445678999999999999999999999999998885433222111101001 1345788888887664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.40  E-value=1e-13  Score=101.08  Aligned_cols=70  Identities=23%  Similarity=0.202  Sum_probs=56.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....-++|+.++|+|+||||||||+|.|+|+..|..|.+..++..........+ ++.+++|.|++.++..
T Consensus       492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l-R~~ig~V~Q~~~Lf~g  561 (709)
T COG2274         492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL-RRQVGYVLQDPFLFSG  561 (709)
T ss_pred             eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH-HhheeEEcccchhhcC
Confidence            345566789999999999999999999999999999977666655544443333 6889999999999876

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.39  E-value=1.6e-13  Score=88.74  Aligned_cols=68  Identities=19%  Similarity=0.102  Sum_probs=46.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+.............. .+..+++++|.+.+++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~   89 (237)
T cd03252          22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAW-LRRQVGVVLQENVLFN   89 (237)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHH-HhhcEEEEcCCchhcc
Confidence            4445688999999999999999999999999998885443332111101001 1345788888887653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.39  E-value=1.3e-13  Score=101.06  Aligned_cols=70  Identities=20%  Similarity=0.115  Sum_probs=53.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....++|++++|+|+||||||||+++|+|+..+.+|.+..++.......... .++.++++.|.|.+++.
T Consensus       500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~-lr~~i~~v~Q~~~lF~g  569 (711)
T TIGR00958       500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY-LHRQVALVGQEPVLFSG  569 (711)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH-HHhhceEEecCcccccc
Confidence            34455689999999999999999999999999999986655444333322222 24678999999999875

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.39  E-value=1.4e-13  Score=88.55  Aligned_cols=69  Identities=16%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+.............. .+...+|+++.+.+++
T Consensus        22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~   90 (229)
T cd03254          22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKS-LRSMIGVVLQDTFLFS   90 (229)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHH-HhhhEEEecCCchhhh
Confidence            34455678999999999999999999999999998885443322111101001 1345788888887654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.39  E-value=1.9e-13  Score=84.67  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+...++++|.+.+++
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~   89 (173)
T cd03246          22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE-LGDHVGYLPQDDELFS   89 (173)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHH-HHhheEEECCCCcccc
Confidence            3455678999999999999999999999999998885443332211111111 1356789999887764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.39  E-value=2.1e-13  Score=84.34  Aligned_cols=69  Identities=16%  Similarity=0.126  Sum_probs=47.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+...+++++.+.+++
T Consensus        21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~~~~~~~~   89 (171)
T cd03228          21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLES-LRKNIAYVPQDPFLFS   89 (171)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHH-HHhhEEEEcCCchhcc
Confidence            34455678999999999999999999999999998885433332211111111 1346788899887764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.39  E-value=1.3e-13  Score=89.25  Aligned_cols=69  Identities=20%  Similarity=0.129  Sum_probs=47.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.+|.+.............. .+...++++|.+.+++
T Consensus        22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~   90 (238)
T cd03249          22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW-LRSQIGLVSQEPVLFD   90 (238)
T ss_pred             eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHH-HHhhEEEECCchhhhh
Confidence            34455678999999999999999999999999998885443332211111101 1245788888877653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.39  E-value=7.3e-13  Score=85.66  Aligned_cols=67  Identities=19%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-.+|++++|+|+||+|||||+++|+|+..+..|.+...........   ..+...++++|.+.+++.
T Consensus        19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~---~~~~~i~~~~q~~~~~~~   85 (235)
T cd03299          19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP---PEKRDISYVPQNYALFPH   85 (235)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC---hhHcCEEEEeecCccCCC
Confidence            3444578999999999999999999999999998885443332211111   113568899999888754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.39  E-value=1.8e-13  Score=96.58  Aligned_cols=70  Identities=13%  Similarity=0.015  Sum_probs=47.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+++|.+...+............+..+++++|.+.++..
T Consensus        18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   87 (491)
T PRK10982         18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ   87 (491)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence            4445678999999999999999999999999988885443222111000000113457899998876544

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=2.6e-13  Score=88.96  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeE--EeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~   94 (107)
                      ..-+++|+|+||||||||+|+|+|+..|+.|.+..+..+.... +..  ...+++++||||+.-+|++     ++++.++
T Consensus        23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH-----~tVrgNL   97 (352)
T COG4148          23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH-----YTVRGNL   97 (352)
T ss_pred             CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc-----eEEecch
Confidence            3378999999999999999999999999999665444332221 211  2235789999999999988     6776666


Q ss_pred             HHhh
Q 038901           95 KCLG   98 (107)
Q Consensus        95 ~~~~   98 (107)
                      .|-.
T Consensus        98 ~YG~  101 (352)
T COG4148          98 RYGM  101 (352)
T ss_pred             hhhh
Confidence            6544

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.39  E-value=2.1e-13  Score=87.31  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=47.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|...+..|.+.............. .++.+++++|.|.+++
T Consensus        24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~l~~   91 (221)
T cd03244          24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD-LRSRISIIPQDPVLFS   91 (221)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHH-HhhhEEEECCCCcccc
Confidence            3445578999999999999999999999999998885433322211111111 1456889999887764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.39  E-value=1.8e-13  Score=97.24  Aligned_cols=69  Identities=22%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|+.++|+|+||||||||++.|+|+..+..|.+..+........... .++..+++.|.|.+++.
T Consensus       342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~-lr~~i~~v~Q~~~lf~~  410 (529)
T TIGR02857       342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS-WRDQIAWVPQHPFLFAG  410 (529)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH-HHhheEEEcCCCcccCc
Confidence            3455688999999999999999999999999999886554443322222212 24679999999998875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.39  E-value=1.1e-13  Score=101.24  Aligned_cols=68  Identities=22%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|.|.+++.
T Consensus       500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l-r~~i~~v~Q~~~lf~g  567 (710)
T TIGR03796       500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL-ANSVAMVDQDIFLFEG  567 (710)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH-HhheeEEecCChhhhc
Confidence            3456789999999999999999999999999999865554443332222222 5789999999999865

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.39  E-value=2.3e-13  Score=89.83  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.
T Consensus        20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~   54 (272)
T PRK13547         20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG   54 (272)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence            34455678999999999999999999999999876

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.39  E-value=2.7e-13  Score=85.80  Aligned_cols=72  Identities=13%  Similarity=0.088  Sum_probs=47.9

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .......+|++++|+|+||||||||+++|+|+.  .+..|.+................+...++++|.|.+++.
T Consensus        18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   91 (200)
T cd03217          18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG   91 (200)
T ss_pred             ccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence            334556688999999999999999999999994  677775433322211111101112348899999887764

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.39  E-value=1.3e-13  Score=100.90  Aligned_cols=69  Identities=13%  Similarity=0.143  Sum_probs=52.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.++|+|+||||||||++.|+|+..++.|.+..++..........+ ++.++++.|.|.+++.
T Consensus       494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l-r~~i~~v~Q~~~lf~g  562 (708)
T TIGR01193       494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL-RQFINYLPQEPYIFSG  562 (708)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH-HHheEEEecCceehhH
Confidence            34456789999999999999999999999999999966555543333222222 5679999999999864

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.39  E-value=4.3e-13  Score=84.41  Aligned_cols=74  Identities=12%  Similarity=0.048  Sum_probs=50.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA--FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+|+||||||||+++|+|+..  +..|.+........    .. .+...++++|.+.++..     .++
T Consensus        27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~-~~~~i~~~~q~~~~~~~-----~tv   96 (192)
T cd03232          27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KN-FQRSTGYVEQQDVHSPN-----LTV   96 (192)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HH-hhhceEEecccCccccC-----CcH
Confidence            34556789999999999999999999999753  56664332221111    11 23568899998887765     566


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus        97 ~~~l~~  102 (192)
T cd03232          97 REALRF  102 (192)
T ss_pred             HHHHHH
Confidence            666654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.39  E-value=2.2e-13  Score=97.94  Aligned_cols=69  Identities=22%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+.+++|+|.+++.
T Consensus       355 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~~v~Q~~~lf~~  423 (588)
T PRK13657        355 SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL-RRNIAVVFQDAGLFNR  423 (588)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH-HhheEEEecCcccccc
Confidence            34556789999999999999999999999999998865544443332222222 4679999999999875

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.38  E-value=5.4e-12  Score=73.27  Aligned_cols=60  Identities=28%  Similarity=0.382  Sum_probs=40.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .|+|+|++|+|||||+|+|++......+. ..+.+.........+ ......++||||+.+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~   60 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFEY-NNKKFILVDTPGINDG   60 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEEE-TTEEEEEEESSSCSSS
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeeee-ceeeEEEEeCCCCccc
Confidence            48999999999999999999864333332 223333332233333 5667789999999875

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=2.2e-13  Score=90.30  Aligned_cols=64  Identities=20%  Similarity=0.091  Sum_probs=43.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      ....+|++++|+|+||||||||+++|+|+..+..   |.+.............. .+..+++++|.|.
T Consensus        28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~-~~~~ig~v~q~~~   94 (282)
T PRK13640         28 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD-IREKVGIVFQNPD   94 (282)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH-HHhheEEEEECHH
Confidence            4556789999999999999999999999998876   43322222111101001 1356889999984

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=1.8e-13  Score=98.40  Aligned_cols=71  Identities=18%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +.....++|++++||||||+||||+++.|.+++.|++|.+..++....+..+..+ ++++++|-|.|-++..
T Consensus       486 ~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l-r~~Ig~V~QEPvLFs~  556 (716)
T KOG0058|consen  486 NLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL-RRKIGLVGQEPVLFSG  556 (716)
T ss_pred             CceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH-HHHeeeeeccceeecc
Confidence            3445567889999999999999999999999999999987777777666655444 6899999999999975

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=3.7e-13  Score=89.41  Aligned_cols=68  Identities=18%  Similarity=0.033  Sum_probs=47.1

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee---eeEEeeCCcEEEEEeCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM---KTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~v~d~p   77 (107)
                      ........+|++++|+|+||||||||+++|+|+..+++|.+..........   ......+..+++++|.|
T Consensus        24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~   94 (287)
T PRK13641         24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFP   94 (287)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeCh
Confidence            334455668899999999999999999999999999988544333221100   00011134688999987

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.38  E-value=1.2e-12  Score=93.72  Aligned_cols=67  Identities=18%  Similarity=0.056  Sum_probs=50.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+...            ....++|++|.|.+++.     .++.
T Consensus        24 is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~------------~~~~i~~v~Q~~~~~~~-----~tv~   86 (552)
T TIGR03719        24 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA------------PGIKVGYLPQEPQLDPT-----KTVR   86 (552)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec------------CCCEEEEEeccCCCCCC-----CcHH
Confidence            344556789999999999999999999999998887743211            02468899999988765     4555


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus        87 e~i~   90 (552)
T TIGR03719        87 ENVE   90 (552)
T ss_pred             HHHH
Confidence            5554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.38  E-value=9.8e-13  Score=81.08  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+....            ...++|++|.+.++.      .+.
T Consensus        19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~------------~~~i~~~~q~~~~~~------~tv   80 (166)
T cd03223          19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE------------GEDLLFLPQRPYLPL------GTL   80 (166)
T ss_pred             cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------CceEEEECCCCcccc------ccH
Confidence            33455568899999999999999999999999988877432111            246778888876642      355


Q ss_pred             HHHHH
Q 038901           91 KEIVK   95 (107)
Q Consensus        91 ~~~~~   95 (107)
                      .+++.
T Consensus        81 ~~nl~   85 (166)
T cd03223          81 REQLI   85 (166)
T ss_pred             HHHhh
Confidence            55543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.38  E-value=2.2e-13  Score=87.36  Aligned_cols=72  Identities=14%  Similarity=0.064  Sum_probs=48.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCc--ee--eEeeeeeE---EeeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSG--VT--TTCEMKTT---VLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~--~~--~~~~~~~~---~~~~~~~~~v~d~p~~~~~   82 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+...  ..  ........   .......++++|.+.+++.
T Consensus        26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~  104 (224)
T TIGR02324        26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPR  104 (224)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCC
Confidence            3345556789999999999999999999999999888854322  10  00000000   0112457899999887654

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.38  E-value=7e-13  Score=86.87  Aligned_cols=78  Identities=14%  Similarity=0.051  Sum_probs=51.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee---ee--eEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE---MK--TTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~---~~--~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+...++....   ..  .....+..+++++|.|.+++.     
T Consensus        30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-----  104 (257)
T PRK14246         30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH-----  104 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCC-----
Confidence            34455789999999999999999999999999888754322221110   00  000114568899999988765     


Q ss_pred             HHHHHHHH
Q 038901           88 FVGKEIVK   95 (107)
Q Consensus        88 ~~~~~~~~   95 (107)
                      .++.+++.
T Consensus       105 ~tv~~nl~  112 (257)
T PRK14246        105 LSIYDNIA  112 (257)
T ss_pred             CcHHHHHH
Confidence            34455544

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.38  E-value=2.2e-13  Score=97.81  Aligned_cols=69  Identities=20%  Similarity=0.163  Sum_probs=52.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|++++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|+|.+++.
T Consensus       360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~~v~Q~~~lf~~  428 (574)
T PRK11160        360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL-RQAISVVSQRVHLFSA  428 (574)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH-HhheeEEcccchhhcc
Confidence            34556889999999999999999999999999999866554443332222222 4678999999998865

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=3.5e-13  Score=89.12  Aligned_cols=65  Identities=14%  Similarity=0.051  Sum_probs=45.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+++|.+...+.......... .....++++|.|.
T Consensus        24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~   88 (277)
T PRK13652         24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIRE-VRKFVGLVFQNPD   88 (277)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHhheEEEecCcc
Confidence            3455678999999999999999999999999999885443332211101001 1346789999873

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.38  E-value=1.2e-12  Score=93.69  Aligned_cols=68  Identities=18%  Similarity=0.051  Sum_probs=50.7

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .......+|++++|+|+||||||||+++|+|+..++.|.+...            ....+++++|.|.+++.     .++
T Consensus        25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~------------~~~~i~~v~Q~~~~~~~-----~tv   87 (556)
T PRK11819         25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA------------PGIKVGYLPQEPQLDPE-----KTV   87 (556)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec------------CCCEEEEEecCCCCCCC-----CcH
Confidence            3444566789999999999999999999999998887743211            02457899999887765     455


Q ss_pred             HHHHH
Q 038901           91 KEIVK   95 (107)
Q Consensus        91 ~~~~~   95 (107)
                      .+++.
T Consensus        88 ~e~l~   92 (556)
T PRK11819         88 RENVE   92 (556)
T ss_pred             HHHHH
Confidence            55544

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.37  E-value=1.7e-13  Score=88.03  Aligned_cols=68  Identities=16%  Similarity=0.105  Sum_probs=47.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+............ ......+++++|.+.+++
T Consensus        34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~~q~~~l~~  101 (226)
T cd03248          34 SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH-KYLHSKVSLVGQEPVLFA  101 (226)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH-HHHHhhEEEEecccHHHh
Confidence            34556789999999999999999999999999988854332221111111 111356889999887653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.37  E-value=3.5e-13  Score=83.05  Aligned_cols=83  Identities=17%  Similarity=0.072  Sum_probs=60.8

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee---eeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM---KTTVLKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      ........+|+.++||||+|||||||+-.++|+..+++|.+...++.....   ....+..+++++|||...+.+.    
T Consensus        27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~----  102 (228)
T COG4181          27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN----  102 (228)
T ss_pred             ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc----
Confidence            344556678899999999999999999999999999999765444332211   2223335789999999988877    


Q ss_pred             hHHHHHHHHHh
Q 038901           87 EFVGKEIVKCL   97 (107)
Q Consensus        87 ~~~~~~~~~~~   97 (107)
                       ++..|++..-
T Consensus       103 -ltAlENV~lP  112 (228)
T COG4181         103 -LTALENVALP  112 (228)
T ss_pred             -chhhhhccch
Confidence             6666665443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.37  E-value=3.1e-13  Score=86.43  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.............. .+...++++|.+.++.
T Consensus        24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~   91 (220)
T cd03245          24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPAD-LRRNIGYVPQDVTLFY   91 (220)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHH-HHhhEEEeCCCCcccc
Confidence            3455678999999999999999999999999888885433332111101001 1345788888887664

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.37  E-value=4.1e-13  Score=87.51  Aligned_cols=71  Identities=11%  Similarity=-0.033  Sum_probs=45.6

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ........+|++++|+|+||||||||+++|+|+.++ .|.+............... ....+|++|.+.++..
T Consensus        13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~-~~~i~~v~q~~~~~~~   83 (248)
T PRK03695         13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAEL-ARHRAYLSQQQTPPFA   83 (248)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHH-hhheEEecccCccCCC
Confidence            344455668899999999999999999999999854 5643332221111010011 2347888888766544

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.37  E-value=6.4e-13  Score=86.96  Aligned_cols=70  Identities=11%  Similarity=0.079  Sum_probs=46.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEee--eeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCE--MKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..+     +.|.+.........  ..... .+..+++++|.+.+++.
T Consensus        23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~-~~~~i~~~~q~~~~~~~   99 (258)
T PRK14241         23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA-VRRTIGMVFQRPNPFPT   99 (258)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH-HhcceEEEccccccCCC
Confidence            3445567899999999999999999999999864     46643332221100  00011 13568899999887764

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=4.4e-13  Score=89.05  Aligned_cols=66  Identities=20%  Similarity=0.085  Sum_probs=46.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee-EEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT-TVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+............ ....+..++|++|.|.
T Consensus        27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~   93 (287)
T PRK13637         27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPE   93 (287)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCch
Confidence            34556789999999999999999999999999998854433322111100 0011357899999984

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=6e-13  Score=89.66  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=35.5

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS   52 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~   52 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+..
T Consensus        44 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i   85 (320)
T PRK13631         44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV   85 (320)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            334455688999999999999999999999999999885543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=3.9e-13  Score=88.86  Aligned_cols=66  Identities=17%  Similarity=0.072  Sum_probs=46.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+...+.......... ....+++++|.|.
T Consensus        26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~   91 (277)
T PRK13642         26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWN-LRRKIGMVFQNPD   91 (277)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHH-HhcceEEEEECHH
Confidence            34455678999999999999999999999999999885443332211111111 1356889999984

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=5.5e-13  Score=88.65  Aligned_cols=68  Identities=19%  Similarity=0.148  Sum_probs=47.7

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee---eeEEeeCCcEEEEEeCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM---KTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~v~d~p   77 (107)
                      ........+|++++|+|+||||||||+++|+|+..+++|.+..........   ......+..+++++|.|
T Consensus        23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~   93 (288)
T PRK13643         23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP   93 (288)
T ss_pred             eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCc
Confidence            344555668899999999999999999999999999988654433321100   00011145688999988

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.36  E-value=9.3e-13  Score=85.20  Aligned_cols=70  Identities=19%  Similarity=0.094  Sum_probs=50.2

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      +.......+|+.++|+|+||||||||++.|+|+..+..|.+................++++++|+|.|..
T Consensus        21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~   90 (235)
T COG1122          21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDD   90 (235)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccc
Confidence            3445556678999999999999999999999999999986533333222101111235789999999943

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.36  E-value=3.8e-13  Score=95.14  Aligned_cols=70  Identities=14%  Similarity=0.003  Sum_probs=46.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+  +.|.+................+..++|++|.+.+++.
T Consensus        21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   92 (500)
T TIGR02633        21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE   92 (500)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence            445567899999999999999999999999876  5664332222111000000113458899998876654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.36  E-value=4.7e-13  Score=90.54  Aligned_cols=73  Identities=18%  Similarity=0.098  Sum_probs=50.4

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCC--CCCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTP--GLFDL   82 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p--~~~~~   82 (107)
                      ........+|++++|+|+||||||||+++|+|+..+++|.+...+.........  ...++.+++++|.|  .+++.
T Consensus        38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  114 (331)
T PRK15079         38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR  114 (331)
T ss_pred             eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence            344556678899999999999999999999999999888554433322111100  01135689999998  45543

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.36  E-value=2.4e-13  Score=99.35  Aligned_cols=69  Identities=20%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.++|+|+||||||||++.|+|+..+..|.+..++..........+ ++.++++.|.|.+++.
T Consensus       485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l-r~~i~~v~Q~~~lf~~  553 (694)
T TIGR03375       485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL-RRNIGYVPQDPRLFYG  553 (694)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH-HhccEEECCChhhhhh
Confidence            34456789999999999999999999999999999865554443332222222 5679999999998864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.36  E-value=7.1e-13  Score=86.21  Aligned_cols=68  Identities=16%  Similarity=0.098  Sum_probs=46.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..   +..|.+............ ...+..++|++|.|.+++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~~~~~i~~~~q~~~l~~   92 (246)
T PRK14269         22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VALRKNVGMVFQQPNVFV   92 (246)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH-HHHhhhEEEEecCCcccc
Confidence            44556789999999999999999999999874   466644332222111111 111356899999988775

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.36  E-value=9.5e-13  Score=85.64  Aligned_cols=70  Identities=17%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.     .|.+.......... ......++.+++++|.+.+++
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   95 (247)
T TIGR00972        20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP   95 (247)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence            34455678999999999999999999999999876     67443322221110 000111356889999988765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.36  E-value=1.3e-12  Score=85.22  Aligned_cols=71  Identities=13%  Similarity=0.055  Sum_probs=44.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCC--ccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGR--RAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+  ..+..|.+.....................+++|.+.+++.
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~   98 (252)
T CHL00131         26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG   98 (252)
T ss_pred             ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence            3445567899999999999999999999997  4566775433222111111101111135677788766543

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.36  E-value=6.4e-13  Score=88.40  Aligned_cols=66  Identities=20%  Similarity=0.151  Sum_probs=46.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee---eeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE---MKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+.........   .......++.++|++|.|.
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~   95 (290)
T PRK13634         27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPE   95 (290)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCch
Confidence            44556889999999999999999999999999998865443332110   0000011356889999873

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.35  E-value=2.7e-13  Score=97.21  Aligned_cols=69  Identities=20%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|+.++|+|+||||||||+++|+|+..+..|.+..+...........+ ++.+++++|+|.+++.
T Consensus       360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i~~~~Q~~~lf~~  428 (576)
T TIGR02204       360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL-RARMALVPQDPVLFAA  428 (576)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH-HHhceEEccCCccccc
Confidence            34556899999999999999999999999999988865443332222111122 3578999999999875

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=8.1e-13  Score=87.75  Aligned_cols=66  Identities=15%  Similarity=0.092  Sum_probs=46.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee---EEeeCCcEEEEEeCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTP   77 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p   77 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+............   ....+..+++++|.|
T Consensus        26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~   94 (286)
T PRK13646         26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP   94 (286)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecCh
Confidence            344556789999999999999999999999999998854433322111000   001145689999987

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=7.2e-13  Score=87.67  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=45.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTP   77 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p   77 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+...........   .....+..++|++|.|
T Consensus        27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~   94 (280)
T PRK13649         27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP   94 (280)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeCh
Confidence            3455678999999999999999999999999998885443332211100   0001134578999987

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=9.8e-13  Score=85.88  Aligned_cols=70  Identities=14%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.     .|.+.......... ......+..++|++|.+.++.
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  101 (254)
T PRK14273         26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL  101 (254)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence            34455688999999999999999999999998864     55433222211100 000111456899999987763

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=7.3e-13  Score=87.70  Aligned_cols=67  Identities=16%  Similarity=0.110  Sum_probs=46.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+................++..++++|.|.
T Consensus        29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~   95 (280)
T PRK13633         29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPD   95 (280)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChh
Confidence            3445567899999999999999999999999999988654433222111100111456889999884

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.35  E-value=2.7e-13  Score=84.36  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.......... ... .++..++++|.|.+++
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~-~~~~i~~~~q~~~~~~   88 (178)
T cd03247          22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKA-LSSLISVLNQRPYLFD   88 (178)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHH-HHhhEEEEccCCeeec
Confidence            345567899999999999999999999999999888543332211110 001 1356788898887764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.35  E-value=7.8e-13  Score=86.74  Aligned_cols=78  Identities=18%  Similarity=0.023  Sum_probs=50.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeee----eEEeeCCcEEEEEeCCCCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMK----TTVLKDGQVVNVIDTPGLFDLSAG   85 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~----~~~~~~~~~~~v~d~p~~~~~~~~   85 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.   |.+...+.......    .....+...++++|.+.+++.   
T Consensus        24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~---  100 (262)
T PRK09984         24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNR---  100 (262)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccC---
Confidence            44456789999999999999999999999998753   43322221111000    000113457899999888765   


Q ss_pred             chHHHHHHHH
Q 038901           86 SEFVGKEIVK   95 (107)
Q Consensus        86 ~~~~~~~~~~   95 (107)
                        .++.+++.
T Consensus       101 --~tv~e~l~  108 (262)
T PRK09984        101 --LSVLENVL  108 (262)
T ss_pred             --CcHHHHHH
Confidence              45555554

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.35  E-value=3.1e-13  Score=96.75  Aligned_cols=68  Identities=24%  Similarity=0.115  Sum_probs=51.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..-++|++++|+|+||+|||||+++|+|+..+..|.+..+........... .++...|+.|+|.+++.
T Consensus       353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~-~~~~i~~v~Q~~~lf~~  420 (571)
T TIGR02203       353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS-LRRQVALVSQDVVLFND  420 (571)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHH-HHhhceEEccCcccccc
Confidence            355678999999999999999999999999999886554443322222112 24678999999999875

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=1.3e-12  Score=85.10  Aligned_cols=70  Identities=16%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+.     .|.+.......... ......+..++|++|.+.++..
T Consensus        24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   99 (252)
T PRK14272         24 NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPT   99 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcC
Confidence            3455678999999999999999999999998753     45333222211100 0000113468899999887764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=1.6e-12  Score=86.47  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=45.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee----eeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE----MKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+.........    .......++.+++++|.|.
T Consensus        31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~  100 (289)
T PRK13645         31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE  100 (289)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence            34456789999999999999999999999999988854433221110    0000111346889999874

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.4e-12  Score=85.14  Aligned_cols=70  Identities=19%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--c---cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA--F---KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..  +   +.|.+.......... ......+..+++++|.+.++..
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~   99 (252)
T PRK14256         24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPA   99 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCc
Confidence            34556789999999999999999999999975  3   356433322211100 0001124568899999888764

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.34  E-value=1.4e-12  Score=83.85  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEe-CCCCCCCCCC
Q 038901            7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVID-TPGLFDLSAG   85 (107)
Q Consensus         7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d-~p~~~~~~~~   85 (107)
                      ....+......+|+.++|||+||||||||++.|+|.++|+.|.+..              ..++..+++ ..||.+.   
T Consensus        41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v--------------~G~v~~li~lg~Gf~pe---  103 (249)
T COG1134          41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV--------------TGKVAPLIELGAGFDPE---  103 (249)
T ss_pred             EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEE--------------cceEehhhhcccCCCcc---
Confidence            3455566777889999999999999999999999999999984221              233333333 2344443   


Q ss_pred             chHHHHHHHHHhhcc
Q 038901           86 SEFVGKEIVKCLGMA  100 (107)
Q Consensus        86 ~~~~~~~~~~~~~~~  100 (107)
                        .|.++++.+...+
T Consensus       104 --lTGreNi~l~~~~  116 (249)
T COG1134         104 --LTGRENIYLRGLI  116 (249)
T ss_pred             --cchHHHHHHHHHH
Confidence              7777777665544

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.34  E-value=4.5e-13  Score=96.09  Aligned_cols=69  Identities=17%  Similarity=0.083  Sum_probs=50.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.++|+|+||||||||+++|+|+..+..|.+..+........... .++..+++.|.|.+++.
T Consensus       335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~lf~~  403 (569)
T PRK10789        335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS-WRSRLAVVSQTPFLFSD  403 (569)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH-HHhheEEEccCCeeccc
Confidence            3455688999999999999999999999999999886544333222111111 24668999999988764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.34  E-value=6.5e-13  Score=81.67  Aligned_cols=40  Identities=20%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      ......+|++++|+|+||+|||||+++|+|+..+..|.+.
T Consensus        19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~   58 (163)
T cd03216          19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL   58 (163)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            3455668899999999999999999999999999888543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.34  E-value=4.4e-13  Score=95.05  Aligned_cols=66  Identities=8%  Similarity=0.023  Sum_probs=44.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+................+..++|++|.+
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~  347 (510)
T PRK09700        282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESR  347 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCcc
Confidence            344556789999999999999999999999999888855433321110000000124578888873

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.33  E-value=4.9e-12  Score=80.84  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=33.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+
T Consensus         7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i   44 (213)
T PRK15177          7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF   44 (213)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence            34456789999999999999999999999999888853

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=3.1e-12  Score=91.14  Aligned_cols=58  Identities=19%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+....            ...+++++|.+.+++.
T Consensus        21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~~i~~~~q~~~~~~~   78 (530)
T PRK15064         21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP------------NERLGKLRQDQFAFEE   78 (530)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC------------CCEEEEEeccCCcCCC
Confidence            344567899999999999999999999999988877432111            1347788888877654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.33  E-value=5.5e-14  Score=83.76  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=46.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..+|++++|+|+||||||||+++|+|...+..|.+........... ....+....++.+.+.++..
T Consensus         8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~   73 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-IEELRRRIGYVPQDPQLFPG   73 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-HHHHHHTEEEEESSHCHHTT
T ss_pred             EcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-cccccccccccccccccccc
Confidence            3578999999999999999999999999988875432222211101 11124678899999777765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.33  E-value=3.8e-12  Score=83.21  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+    +.|.+........   ......+.++|++|.+.
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~---~~~~~~~~i~~v~q~~~   89 (254)
T PRK10418         23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA---PCALRGRKIATIMQNPR   89 (254)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc---ccccccceEEEEecCCc
Confidence            345567899999999999999999999999988    6775433222111   11111356889999985

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=1.1e-12  Score=86.51  Aligned_cols=66  Identities=20%  Similarity=0.038  Sum_probs=45.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+........... .....+..+++++|.|.
T Consensus        21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~   87 (271)
T PRK13638         21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPE   87 (271)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChh
Confidence            3455678999999999999999999999999998885443332211000 00011346889999875

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.33  E-value=4.8e-13  Score=95.84  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|++++|+|+||||||||++.|+++..+..|.+..++..........+ ++.+.+++|.|.+++.
T Consensus       349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l-r~~I~~V~Qd~~LF~~  417 (567)
T COG1132         349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL-RKRIGIVSQDPLLFSG  417 (567)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH-HHhccEEcccceeecc
Confidence            34466889999999999999999999999999988866554444333333222 5778899999999875

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=1.1e-12  Score=87.93  Aligned_cols=41  Identities=15%  Similarity=0.156  Sum_probs=35.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      .......+|++++|+|+||||||||+++|+|+..++.|.+.
T Consensus        25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~   65 (305)
T PRK13651         25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE   65 (305)
T ss_pred             eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence            34455668899999999999999999999999999888543

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.33  E-value=2e-12  Score=84.49  Aligned_cols=57  Identities=21%  Similarity=0.116  Sum_probs=43.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+....            ...+++++|.+.++.
T Consensus        24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~------------~~~i~~v~q~~~~~~   80 (251)
T PRK09544         24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG------------KLRIGYVPQKLYLDT   80 (251)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC------------ccCEEEecccccccc
Confidence            344567899999999999999999999999988877432110            235778888876654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.33  E-value=4.9e-13  Score=94.65  Aligned_cols=67  Identities=7%  Similarity=0.001  Sum_probs=45.4

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      .......+|++++|+|+||||||||+++|+|+..++.|.+................+..++|++|.|
T Consensus       270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~  336 (501)
T PRK10762        270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR  336 (501)
T ss_pred             cceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence            3344556789999999999999999999999999888854433321111000001124578999986

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.32  E-value=1.7e-12  Score=79.41  Aligned_cols=64  Identities=33%  Similarity=0.371  Sum_probs=38.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      +++++|+|++|+|||||+|.|.+......+.+    ..+..+........+  ..-++++||||+-+...
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l--~~g~~iIDTPGf~~~~l  102 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL--PDGGYIIDTPGFRSFGL  102 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE--TTSEEEECSHHHHT--G
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec--CCCcEEEECCCCCcccc
Confidence            48999999999999999999999865544422    123333333333333  34679999999976543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.6e-12  Score=84.79  Aligned_cols=69  Identities=16%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..     ++.|.+.......... ......+..+++++|.+.+++
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  100 (253)
T PRK14242         26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP  100 (253)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence            44556789999999999999999999999864     3566433322211100 000011356889999987765

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.7e-12  Score=85.42  Aligned_cols=69  Identities=14%  Similarity=0.103  Sum_probs=46.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+     ..|.+........... .....+..+++++|.|.+++
T Consensus        39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  113 (267)
T PRK14235         39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP  113 (267)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence            345567899999999999999999999999864     5664433222111000 00111356789999988775

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.3e-12  Score=86.03  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEee--eeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCE--MKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..     ++.|.+.........  ..... .+..+++++|.+.+++
T Consensus        32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~-~~~~i~~v~q~~~l~~  107 (269)
T PRK14259         32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE-VRRRIGMVFQQPNPFP  107 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH-HhhceEEEccCCccch
Confidence            344556889999999999999999999999976     355643322221100  00001 1346889999987764

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.3e-12  Score=84.59  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=46.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+     ..|.+.......... ......++.+++++|.+.++.
T Consensus        28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  102 (261)
T PRK14263         28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS  102 (261)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc
Confidence            445568899999999999999999999999876     455433222211100 000112356899999988764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.32  E-value=1.5e-12  Score=85.26  Aligned_cols=66  Identities=17%  Similarity=0.126  Sum_probs=45.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee-----EeeeeeEE---eeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT-----TCEMKTTV---LKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~-----~~~~~~~~---~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+......     ........   ..+...+|++|.+.
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~   99 (258)
T PRK11701         26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR   99 (258)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence            34456889999999999999999999999999988854433321     11100000   01245789999874

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.32  E-value=1.8e-12  Score=84.31  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=44.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+.  .+..|.+................+..++++++.+.+++
T Consensus        21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~   91 (248)
T PRK09580         21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP   91 (248)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence            3445678999999999999999999999995  57777443222211111100111235778888876554

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.32  E-value=1e-12  Score=93.84  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.++|+|+||||||||+++|+|+..+..|.+..++.......... .++..++++|.|.+++.
T Consensus       338 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~lf~~  406 (544)
T TIGR01842       338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET-FGKHIGYLPQDVELFPG  406 (544)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH-HhhheEEecCCcccccc
Confidence            3455678999999999999999999999999999886544333222211111 24678999999988864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.8e-12  Score=84.44  Aligned_cols=70  Identities=16%  Similarity=0.093  Sum_probs=45.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.     .|.+................+...+|++|.+.+++
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~   96 (249)
T PRK14253         22 INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP   96 (249)
T ss_pred             ceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence            34455678999999999999999999999998753     45322222111000000111356889999988765

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.32  E-value=7.4e-13  Score=86.68  Aligned_cols=67  Identities=16%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+|+||+|||||+++|+|+..+..|.+.............. .+..+++++|.|.+++
T Consensus        42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~-~~~~i~~v~q~~~l~~  108 (257)
T cd03288          42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT-LRSRLSIILQDPILFS  108 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH-HhhhEEEECCCCcccc
Confidence            345688999999999999999999999999988885443332211111101 1356788888887764

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2e-12  Score=85.52  Aligned_cols=69  Identities=14%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+     ..|.+................+..++|++|.+.+++
T Consensus        41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~  114 (276)
T PRK14271         41 SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP  114 (276)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence            345567899999999999999999999999875     355332222111110000111356889999988765

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.4e-12  Score=84.41  Aligned_cols=69  Identities=14%  Similarity=0.080  Sum_probs=45.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEee-eeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..     ++.|.+......... .......++.+++++|.+.+++
T Consensus        33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~  107 (260)
T PRK10744         33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP  107 (260)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence            34556789999999999999999999999975     356643332221110 0000111356889999987765

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.8e-12  Score=83.59  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=46.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----cCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA-----SAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~-----g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..     |.+.......... ......+...+|++|.|.+++.
T Consensus        24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   99 (251)
T PRK14249         24 NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK   99 (251)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC
Confidence            34456789999999999999999999999988763     5332222111100 0001124568999999987653

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.31  E-value=4.9e-13  Score=84.85  Aligned_cols=83  Identities=16%  Similarity=0.082  Sum_probs=58.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+++.+.++|.||||||||+|+|+|...+++|.+...+.......... .....+.|+|.|-....   .+++.+
T Consensus        25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~-RA~~larVfQdp~~gt~---~~lTie  100 (263)
T COG1101          25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK-RANLLARVFQDPLAGTA---PELTIE  100 (263)
T ss_pred             CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH-HhhHHHHHhcchhhCCc---ccccHH
Confidence            34556678999999999999999999999999999996655444433322211 13457788898854322   238888


Q ss_pred             HHHHHhh
Q 038901           92 EIVKCLG   98 (107)
Q Consensus        92 ~~~~~~~   98 (107)
                      |++..+.
T Consensus       101 ENl~la~  107 (263)
T COG1101         101 ENLALAE  107 (263)
T ss_pred             HHHHHHH
Confidence            8877654

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.31  E-value=3.3e-12  Score=82.07  Aligned_cols=58  Identities=17%  Similarity=0.118  Sum_probs=43.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ..+|++++|+|+||||||||+++|+|+..+.+|.+.......   .  . ..+.++|++|.|.+
T Consensus         3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~--~-~~~~i~~v~q~~~~   60 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP---G--K-GWRHIGYVPQRHEF   60 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc---h--H-hhCcEEEecccccc
Confidence            357899999999999999999999999998888543332211   0  1 13568899998866

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.9e-12  Score=83.45  Aligned_cols=70  Identities=16%  Similarity=0.050  Sum_probs=46.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+     .+|.+.......... ......+...++++|.|.+++
T Consensus        22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14262         22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP   97 (250)
T ss_pred             eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence            3445567899999999999999999999999763     566433222211100 000111356889999988765

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.31  E-value=2.2e-12  Score=84.95  Aligned_cols=68  Identities=19%  Similarity=0.176  Sum_probs=46.5

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPG   78 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~   78 (107)
                      .......+|++++|+|+||||||||+++|+|+..+.+|.+.............  ...+...++++|.+.
T Consensus        30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~   99 (268)
T PRK10419         30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSI   99 (268)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChh
Confidence            33445567899999999999999999999999999888544333221111100  001356889999883

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=1.5e-12  Score=85.98  Aligned_cols=66  Identities=20%  Similarity=0.056  Sum_probs=45.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+........... ........+++++|.|.
T Consensus        22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   88 (275)
T PRK13639         22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPD   88 (275)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChh
Confidence            4455688999999999999999999999999998885443332211000 00011356889999873

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=8.1e-13  Score=82.12  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ..-..|+.+.|.||||+|||||+++|+|+..+++|.+............ .+ .+...|+--.+++-.     ++++.|+
T Consensus        23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~-~~~l~yLGH~~giK~-----eLTa~EN   95 (209)
T COG4133          23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SY-HQALLYLGHQPGIKT-----ELTALEN   95 (209)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hH-HHHHHHhhccccccc-----hhhHHHH
Confidence            3445679999999999999999999999999999965543222111110 00 133445544555554     4999999


Q ss_pred             HHHhhccCCC
Q 038901           94 VKCLGMAKDG  103 (107)
Q Consensus        94 ~~~~~~~~~~  103 (107)
                      +.|+..++..
T Consensus        96 L~F~~~~~~~  105 (209)
T COG4133          96 LHFWQRFHGS  105 (209)
T ss_pred             HHHHHHHhCC
Confidence            9999887653

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.31  E-value=1.1e-12  Score=81.76  Aligned_cols=76  Identities=11%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             ccccCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901            3 ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      .+.++++.......+++..+++||.||||||||.+.|+|++.|++|.+..+.... ......+...++-+++|+|.-
T Consensus        23 r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L-~~~Dy~~R~k~IRMiFQDpnt   98 (267)
T COG4167          23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIRMIFQDPNT   98 (267)
T ss_pred             hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc-cccchHhhhhheeeeecCCcc
Confidence            3445666677777788899999999999999999999999999999654333221 112222234567788888854

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=1.6e-12  Score=86.24  Aligned_cols=66  Identities=17%  Similarity=0.060  Sum_probs=45.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe-eeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC-EMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+...+.... ........+..++|++|.|.
T Consensus        26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~   92 (283)
T PRK13636         26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPD   92 (283)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcc
Confidence            3455678999999999999999999999999998885443332211 00000011356889999884

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.9e-12  Score=83.48  Aligned_cols=69  Identities=16%  Similarity=0.051  Sum_probs=45.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEee-eeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..     +..|.+......... .......+...++++|.+.+++
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14251         24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP   98 (251)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence            34456789999999999999999999999986     246643322221110 0000111356889999988774

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2e-12  Score=93.65  Aligned_cols=73  Identities=18%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCC--CCCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTP--GLFDL   82 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p--~~~~~   82 (107)
                      ........+|++++|+|+||||||||+++|+|+..++.|.+...+........  ....+..+.|++|.|  .+++.
T Consensus       341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~  417 (623)
T PRK10261        341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR  417 (623)
T ss_pred             eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence            34455666889999999999999999999999999988865443322111100  001135689999998  35543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.31  E-value=4.1e-11  Score=78.26  Aligned_cols=63  Identities=41%  Similarity=0.544  Sum_probs=45.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...+|+|+|++|+|||||+|+|+|......+. ....+.........+ ....+.++||||+.+.
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~   92 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLES   92 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcc
Confidence            34789999999999999999999987654432 223343333333333 4567899999999865

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.30  E-value=1e-12  Score=86.91  Aligned_cols=69  Identities=17%  Similarity=0.063  Sum_probs=48.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .......+|++++|+|+||+|||||+++|+|+.. ..|.+.............. .+..+++++|.|.+++
T Consensus        22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~-lr~~i~~v~q~~~lf~   90 (275)
T cd03289          22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQK-WRKAFGVIPQKVFIFS   90 (275)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHH-HhhhEEEECCCcccch
Confidence            3345566889999999999999999999999987 5664443332221111111 1456899999998875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.3e-12  Score=84.02  Aligned_cols=70  Identities=17%  Similarity=0.079  Sum_probs=45.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..     ++.|.+.......... ......+..++|++|.+.+++.
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~  116 (268)
T PRK14248         41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK  116 (268)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc
Confidence            34456789999999999999999999999754     4566433222211100 0000113568999999887653

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.30  E-value=2.1e-12  Score=85.23  Aligned_cols=63  Identities=21%  Similarity=0.206  Sum_probs=43.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+.........    .......+|++|.|.+
T Consensus        27 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~   89 (272)
T PRK15056         27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVAYVPQSEEV   89 (272)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEEEecccccc
Confidence            34556789999999999999999999999999988854332221110    1112346778777654

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.30  E-value=1.4e-12  Score=93.81  Aligned_cols=68  Identities=18%  Similarity=0.172  Sum_probs=49.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..-++|+.++|+|+||||||||+++|+|+..+..|.+..++.......... .++..++++|.|.+++.
T Consensus       356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~lf~~  423 (585)
T TIGR01192       356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-LRKSIATVFQDAGLFNR  423 (585)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH-HHhheEEEccCCccCcc
Confidence            445678999999999999999999999999999886543332221111111 24678999999988764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=2e-12  Score=87.36  Aligned_cols=70  Identities=13%  Similarity=0.031  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPG   78 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~   78 (107)
                      .........+|++++|+|+||||||||+++|+|+..+.+|.+............  ....++.+++++|.|.
T Consensus        31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~  102 (327)
T PRK11308         31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPY  102 (327)
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCch
Confidence            444555667899999999999999999999999999888854433322211110  0011356899999983

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=4.3e-12  Score=82.85  Aligned_cols=69  Identities=17%  Similarity=0.139  Sum_probs=44.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+     ..|.+.......... ......+..+++++|.+.+++
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~  100 (253)
T PRK14261         26 TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP  100 (253)
T ss_pred             EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc
Confidence            344567899999999999999999999998652     245333222211110 001111356889999988764

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.5e-12  Score=83.50  Aligned_cols=69  Identities=19%  Similarity=0.126  Sum_probs=45.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+     +.|.+........... .....++..+|++|.+.++.
T Consensus        32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  106 (258)
T PRK14268         32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP  106 (258)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence            344567899999999999999999999999874     5664333222111000 00011356889999988765

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.30  E-value=9.2e-13  Score=96.35  Aligned_cols=68  Identities=15%  Similarity=0.063  Sum_probs=51.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|+.++|+|+||||||||+++|+|+..+..|.+..++..........+ ++.+++++|.|.+++.
T Consensus       478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~-r~~i~~v~q~~~lf~~  545 (694)
T TIGR01846       478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL-RRQMGVVLQENVLFSR  545 (694)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH-HHhCeEEccCCeehhh
Confidence            4456789999999999999999999999999999866554443332222222 4678899999988864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.30  E-value=3.3e-12  Score=90.81  Aligned_cols=71  Identities=10%  Similarity=0.027  Sum_probs=47.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCc-eee---Eeeeee--EEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSG-VTT---TCEMKT--TVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~-~~~---~~~~~~--~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+... ...   ......  ....+..++|++|.+.+++.
T Consensus       303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~  379 (520)
T TIGR03269       303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPH  379 (520)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCC
Confidence            344566789999999999999999999999999888854331 110   000000  00113457899999877664

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.29  E-value=3.5e-12  Score=84.11  Aligned_cols=69  Identities=13%  Similarity=0.058  Sum_probs=46.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..     ++.|.+.......... ......+..++|++|.+.++.
T Consensus        44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  118 (271)
T PRK14238         44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP  118 (271)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence            34556789999999999999999999999986     4666443322211100 000111356899999988765

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=4.1e-12  Score=82.82  Aligned_cols=69  Identities=17%  Similarity=0.158  Sum_probs=45.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+     ..|.+........... .....+...++++|.+.+++
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   98 (251)
T PRK14270         24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP   98 (251)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence            344567899999999999999999999999764     4564333222211100 00011356899999988765

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.29  E-value=1.4e-13  Score=86.22  Aligned_cols=90  Identities=13%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCce-eeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGV-TTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      +.+.........+|+.-+|||||||||||++.+|+|...+..|...... +...........+.-++.=+|+|.+++.  
T Consensus        18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~--   95 (249)
T COG4674          18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN--   95 (249)
T ss_pred             eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh--
Confidence            4556666777788899999999999999999999999999988544333 2222222112223456778899999988  


Q ss_pred             CchHHHHHHHHHhhcc
Q 038901           85 GSEFVGKEIVKCLGMA  100 (107)
Q Consensus        85 ~~~~~~~~~~~~~~~~  100 (107)
                         .+++++++.....
T Consensus        96 ---ltV~eNLelA~~~  108 (249)
T COG4674          96 ---LTVRENLELALNR  108 (249)
T ss_pred             ---ccHHHHHHHHhcC
Confidence               8899998876543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.29  E-value=5.9e-13  Score=94.23  Aligned_cols=65  Identities=12%  Similarity=0.018  Sum_probs=43.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.+................+..+++++|.|
T Consensus       273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~  337 (501)
T PRK11288        273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR  337 (501)
T ss_pred             eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence            34556789999999999999999999999999888854433221110000001124567888876

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.29  E-value=3.7e-12  Score=83.84  Aligned_cols=69  Identities=14%  Similarity=0.086  Sum_probs=45.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+     +.|.+........... .....+..+++++|.+.++.
T Consensus        40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~  114 (267)
T PRK14237         40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA  114 (267)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence            344567899999999999999999999999863     5664332222111000 00011356899999987764

>PRK00098 GTPase RsgA; Reviewed

Probab=99.29  E-value=8.4e-12  Score=83.41  Aligned_cols=63  Identities=30%  Similarity=0.332  Sum_probs=43.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCC----CceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+.+++|+|+||+|||||+|+|++......|.+.    .+..+.........  ...++++||||+...
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~~~~~~~DtpG~~~~  229 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--PGGGLLIDTPGFSSF  229 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--CCCcEEEECCCcCcc
Confidence            4689999999999999999999998877766432    12222222222222  345699999999853

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.29  E-value=2.1e-12  Score=93.55  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=34.2

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+
T Consensus        34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i   73 (623)
T PRK10261         34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV   73 (623)
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE
Confidence            3445556789999999999999999999999998888754

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.29  E-value=5.7e-12  Score=83.63  Aligned_cols=55  Identities=16%  Similarity=0.154  Sum_probs=41.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+..              ...++|++|.+.+++
T Consensus        57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i--------------~g~i~yv~q~~~l~~  111 (282)
T cd03291          57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH--------------SGRISFSSQFSWIMP  111 (282)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--------------CCEEEEEeCcccccc
Confidence            3445688999999999999999999999999888774321              224667777766554

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PTZ00243 ABC transporter; Provisional

Probab=99.29  E-value=1.1e-12  Score=102.38  Aligned_cols=68  Identities=21%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....+|++++|+|++|||||||+++|+++..+..|.+..++..........+ ++.+++++|+|.+++.
T Consensus      1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L-R~~I~iVpQdp~LF~g 1398 (1560)
T PTZ00243       1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL-RRQFSMIPQDPVLFDG 1398 (1560)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH-HhcceEECCCCccccc
Confidence            3456889999999999999999999999999999976655554443333233 5789999999999875

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.29  E-value=4.4e-12  Score=82.64  Aligned_cols=69  Identities=14%  Similarity=0.088  Sum_probs=44.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+     ..|.+.......... ......+..+++++|.+.+++
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14240         23 NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP   97 (250)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence            344567899999999999999999999998652     355433222211100 000011346889999988765

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.29  E-value=2.2e-11  Score=74.29  Aligned_cols=61  Identities=28%  Similarity=0.418  Sum_probs=42.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      .|+|+|.+++|||||||+|+|.....+.  ..+.|.........+ ......++|+||+++...
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n--~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~   62 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAKQKVGN--WPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSS   62 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEEE--STTSSSEEEEEEEEE-TTEEEEEEE----SSSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCceecC--CCCCCeeeeeEEEEe-cCceEEEEECCCcccCCC
Confidence            5899999999999999999999865433  344555554444454 578999999999987643

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PLN03232 ABC transporter C family member; Provisional

Probab=99.28  E-value=1.2e-12  Score=101.88  Aligned_cols=68  Identities=21%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|+++||+|+||||||||+++|+++..+..|.+..++..........+ ++++.+++|+|.+++.
T Consensus      1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R~~i~iVpQdp~LF~g 1324 (1495)
T PLN03232       1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL-RRVLSIIPQSPVLFSG 1324 (1495)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH-HhhcEEECCCCeeeCc
Confidence            3446789999999999999999999999999999976555544333332233 5789999999999865

>PLN03130 ABC transporter C family member; Provisional

Probab=99.28  E-value=1.7e-12  Score=101.61  Aligned_cols=69  Identities=19%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+++||+|+||||||||+++|+++..+..|.+..++..........+ ++++++++|+|.+++.
T Consensus      1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L-R~~IsiVpQdp~LF~G 1327 (1622)
T PLN03130       1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL-RKVLGIIPQAPVLFSG 1327 (1622)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH-HhccEEECCCCccccc
Confidence            34556789999999999999999999999999999976655544443333233 5789999999999865

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=7.5e-12  Score=83.13  Aligned_cols=69  Identities=14%  Similarity=0.109  Sum_probs=46.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..     +..|.+...+...... ......+...++++|.+.++.
T Consensus        59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~  133 (285)
T PRK14254         59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP  133 (285)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc
Confidence            34456789999999999999999999999986     4666443322211100 000111456889999987765

>PLN03211 ABC transporter G-25; Provisional

Probab=99.28  E-value=4.6e-12  Score=92.27  Aligned_cols=74  Identities=16%  Similarity=0.137  Sum_probs=52.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc--ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFK--ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      ...+|++++|+||||||||||+++|+|...+.  +|.+..++....    ... .+..+++.|.+.+++.     .+++|
T Consensus        90 ~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~-~~~i~yv~Q~~~l~~~-----lTV~E  159 (659)
T PLN03211         90 MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI-LKRTGFVTQDDILYPH-----LTVRE  159 (659)
T ss_pred             EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhh-ccceEEECcccccCCc-----CCHHH
Confidence            45678999999999999999999999998764  554333222111    111 3468999999988876     67777


Q ss_pred             HHHHhh
Q 038901           93 IVKCLG   98 (107)
Q Consensus        93 ~~~~~~   98 (107)
                      ++.+..
T Consensus       160 ~l~~~a  165 (659)
T PLN03211        160 TLVFCS  165 (659)
T ss_pred             HHHHHH
Confidence            776643

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.28  E-value=2.4e-12  Score=86.93  Aligned_cols=66  Identities=18%  Similarity=0.118  Sum_probs=46.7

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHh
Q 038901           24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (107)
Q Consensus        24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~   97 (107)
                      |+|+||||||||+++|+|+..+++|.+...........   ..++.+++++|.+.+++.     .++.+++.+.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~---~~~~~i~~v~q~~~l~~~-----~tv~enl~~~   66 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP---PHLRHINMVFQSYALFPH-----MTVEENVAFG   66 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEecCccccCC-----CcHHHHHHHH
Confidence            68999999999999999999999885443332211111   113568999999988876     5666666543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.27  E-value=4.2e-12  Score=100.65  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+...+..... .... .++.+++++|.+.+++.     .+++
T Consensus      1958 ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~-~r~~IGy~pQ~~~L~~~-----LTv~ 2030 (2272)
T TIGR01257      1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISD-VHQNMGYCPQFDAIDDL-----LTGR 2030 (2272)
T ss_pred             eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHH-HhhhEEEEeccccCCCC-----CCHH
Confidence            344556789999999999999999999999999999865443322111 0001 13568999999998876     6777


Q ss_pred             HHHHHhhc
Q 038901           92 EIVKCLGM   99 (107)
Q Consensus        92 ~~~~~~~~   99 (107)
                      |++.+...
T Consensus      2031 E~L~l~a~ 2038 (2272)
T TIGR01257      2031 EHLYLYAR 2038 (2272)
T ss_pred             HHHHHHHH
Confidence            77765443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.27  E-value=9.7e-13  Score=93.09  Aligned_cols=67  Identities=7%  Similarity=-0.027  Sum_probs=44.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      .......+|++++|+|+||||||||+++|+|+..+ .+|.+................+..+++++|.+
T Consensus       278 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~  345 (500)
T TIGR02633       278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR  345 (500)
T ss_pred             cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence            34556678899999999999999999999999985 67754332221110000001134578888885

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=4e-12  Score=83.26  Aligned_cols=69  Identities=12%  Similarity=0.016  Sum_probs=44.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....+|++++|+|+||||||||+++|+|+..+     ..|.+...+...... ......+..++|++|.+.+++.
T Consensus        33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  107 (259)
T PRK14274         33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ  107 (259)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc
Confidence            34567899999999999999999999999762     355433222211100 0000113568899999887653

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.27  E-value=4.6e-12  Score=78.93  Aligned_cols=38  Identities=13%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS   52 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~   52 (107)
                      ...+|++++|+|+||||||||+++|+|+..++.|.+..
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   58 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW   58 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEE
Confidence            45678999999999999999999999999998885443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=5.4e-12  Score=83.84  Aligned_cols=69  Identities=17%  Similarity=0.137  Sum_probs=45.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..     +..|.+.......... ......+..++|++|.|.+++
T Consensus        59 sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  133 (286)
T PRK14275         59 NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP  133 (286)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc
Confidence            34556789999999999999999999999753     3666443322211100 000011356889999988764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.27  E-value=1.5e-11  Score=87.40  Aligned_cols=58  Identities=22%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|.++||||+||+||||||++|+|...++.|.+...            ..-++.++.|.+.+.+.
T Consensus        23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~------------~~~~v~~l~Q~~~~~~~   80 (530)
T COG0488          23 SLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP------------KGLRVGYLSQEPPLDPE   80 (530)
T ss_pred             cceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec------------CCceEEEeCCCCCcCCC
Confidence            34455679999999999999999999999998888742210            12367888888888765

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.27  E-value=7.9e-12  Score=81.49  Aligned_cols=70  Identities=19%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--c---cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA--F---KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..  +   .+|.+.......... ......+..+++++|.+.+++
T Consensus        24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   99 (252)
T PRK14239         24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP   99 (252)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence            344556789999999999999999999999843  4   356433322211100 000111356899999988765

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=3.1e-12  Score=86.52  Aligned_cols=70  Identities=17%  Similarity=0.123  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPG   78 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~   78 (107)
                      .........+|++++|+|+||||||||+++|+|+..+    +.|.+...+.........   ...++.+.+++|.|.
T Consensus        23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            3444556678899999999999999999999999863    455333222211111100   111246889999986

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.26  E-value=3.4e-12  Score=86.34  Aligned_cols=70  Identities=17%  Similarity=0.220  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPG   78 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~   78 (107)
                      .........+|++++|+|+||||||||+++|+|+..+.   +|.+...+.........   .+..+.+.+++|.|.
T Consensus        32 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~  107 (330)
T PRK09473         32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM  107 (330)
T ss_pred             EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence            34445566788999999999999999999999999875   56433333221111100   011246899999983

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=7e-12  Score=82.16  Aligned_cols=70  Identities=13%  Similarity=0.060  Sum_probs=45.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+     +.|.+.......... ......+..+++++|.+.+++
T Consensus        26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  101 (259)
T PRK14260         26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP  101 (259)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence            3445567899999999999999999999999774     245433222211100 000111356899999988765

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.26  E-value=8.8e-12  Score=89.33  Aligned_cols=57  Identities=19%  Similarity=0.138  Sum_probs=42.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC-CCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP-GLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p-~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+..+.            ...++|++|.+ .++.
T Consensus       344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~------------~~~i~~v~q~~~~~~~  401 (556)
T PRK11819        344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE------------TVKLAYVDQSRDALDP  401 (556)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC------------ceEEEEEeCchhhcCC
Confidence            445567899999999999999999999999988877432111            11467888875 4444

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.26  E-value=1.6e-12  Score=92.14  Aligned_cols=67  Identities=7%  Similarity=-0.033  Sum_probs=44.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      .......+|++++|+|+||||||||+++|+|+.. +++|.+................+..++|++|.+
T Consensus       280 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~  347 (506)
T PRK13549        280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR  347 (506)
T ss_pred             ceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcch
Confidence            3445667889999999999999999999999988 477754432221110000000123578888885

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.26  E-value=1.4e-11  Score=81.07  Aligned_cols=38  Identities=24%  Similarity=0.237  Sum_probs=33.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.
T Consensus        43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~   80 (264)
T PRK13546         43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK   80 (264)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            34455688999999999999999999999999988874

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.26  E-value=2.7e-12  Score=100.16  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=54.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+++||+|++|||||||+++|+++..+..|.+..++..........+ ++++.+++|+|.+++.
T Consensus      1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L-R~~i~iVpQdp~LF~g 1374 (1522)
T TIGR00957      1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL-RFKITIIPQDPVLFSG 1374 (1522)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH-HhcCeEECCCCcccCc
Confidence            34556889999999999999999999999999999976655555444333232 5789999999999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=8.9e-12  Score=84.29  Aligned_cols=69  Identities=16%  Similarity=0.150  Sum_probs=45.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....+|++++|+|+||||||||+++|+|+...     ..|.+...+....... .....+..+++++|.|.++..
T Consensus       103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~  177 (329)
T PRK14257        103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEM  177 (329)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCC
Confidence            44567899999999999999999999999863     4553322222111000 001124678999999988753

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.25  E-value=1.7e-12  Score=92.80  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=50.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...-++|+.++|+|+||||||||+++|+|+..+..|.+..++.......... .++.++++.|.|.+++.
T Consensus       343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~lf~~  411 (547)
T PRK10522        343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED-YRKLFSAVFTDFHLFDQ  411 (547)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHH-HhhheEEEecChhHHHH
Confidence            3445688999999999999999999999999999986554443322211112 24678899999987754

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.25  E-value=6e-12  Score=82.13  Aligned_cols=40  Identities=20%  Similarity=0.245  Sum_probs=34.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+.
T Consensus        22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   61 (253)
T TIGR02323        22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT   61 (253)
T ss_pred             ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3455567899999999999999999999999999888543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.25  E-value=1.7e-11  Score=81.61  Aligned_cols=62  Identities=31%  Similarity=0.319  Sum_probs=42.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC----ceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----GVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +.+++++|+||+|||||+|.|++......|.+..    +..+........  ....++++||||+.+.
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~--~~~~~~liDtPG~~~~  226 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP--LPGGGLLIDTPGFREF  226 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE--cCCCCEEEECCCCCcc
Confidence            3789999999999999999999998877664321    111222222222  2335689999999553

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=8.4e-12  Score=82.02  Aligned_cols=70  Identities=13%  Similarity=0.071  Sum_probs=44.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEe---eeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTC---EMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~---~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+     ++|.+........   ........+..+++++|.+.++..
T Consensus        36 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~  113 (265)
T PRK14252         36 NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK  113 (265)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc
Confidence            344567899999999999999999999999864     4453222111100   000001113567899999887753

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.25  E-value=5.7e-12  Score=82.81  Aligned_cols=70  Identities=13%  Similarity=0.045  Sum_probs=45.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEee-eeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCE-MKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+     +.|.+......... .......+..+++++|.+.+++
T Consensus        29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~  104 (264)
T PRK14243         29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP  104 (264)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence            3455567899999999999999999999998652     45643322221100 0000111356889999987764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.24  E-value=1.9e-12  Score=91.88  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      ......+|++++|+|+||||||||+++|+|+..+..|.+.
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~  321 (510)
T PRK15439        282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM  321 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence            4445567899999999999999999999999998888543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.24  E-value=1.4e-11  Score=88.25  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .....+|++++|+|+||||||||+++|+|+..+.+|.
T Consensus       342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~  378 (552)
T TIGR03719       342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT  378 (552)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence            3445678999999999999999999999999888774

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.24  E-value=1.8e-12  Score=86.23  Aligned_cols=84  Identities=13%  Similarity=0.011  Sum_probs=63.0

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      .......+.|++++|+|-||||||||+++|.+++.++.|.+...........   ...+.+++..+|||..+++++    
T Consensus        45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh----  120 (386)
T COG4175          45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH----  120 (386)
T ss_pred             ccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc----
Confidence            3455667789999999999999999999999999999996654444332222   122335678999999999988    


Q ss_pred             hHHHHHHHHHhh
Q 038901           87 EFVGKEIVKCLG   98 (107)
Q Consensus        87 ~~~~~~~~~~~~   98 (107)
                       .++.++..|-.
T Consensus       121 -rtVl~Nv~fGL  131 (386)
T COG4175         121 -RTVLENVAFGL  131 (386)
T ss_pred             -hhHhhhhhcce
Confidence             66666665543

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=1.4e-11  Score=80.35  Aligned_cols=69  Identities=20%  Similarity=0.117  Sum_probs=44.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--c---cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA--F---KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~--~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..  +   .+|.+.......... ......+..+++++|.+.+++
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   99 (252)
T PRK14255         25 DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP   99 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence            34456789999999999999999999999864  3   355433222211100 000011356889999988765

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=5e-12  Score=85.40  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc----cccCCCCceeeEeeeee---EEeeCCcEEEEEeCCC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF----KASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTPG   78 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~----~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p~   78 (107)
                      .........+|++++|+|+||||||||+++|+|+..+    ++|.+...+........   ....++.+++++|.|.
T Consensus        23 l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~   99 (326)
T PRK11022         23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM   99 (326)
T ss_pred             EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence            3444566778899999999999999999999999864    45533332222111110   0111246899999984

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=8.7e-12  Score=81.31  Aligned_cols=71  Identities=17%  Similarity=0.099  Sum_probs=45.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeeeeeE-EeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEMKTT-VLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++++|+|+||||||||+++|+|+..     +..|.+............. ...+...+|++|.+.+++.
T Consensus        24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~  100 (251)
T PRK14244         24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK  100 (251)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC
Confidence            344556789999999999999999999999975     2456433222111100000 0113568899999887653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.24  E-value=7.2e-12  Score=89.26  Aligned_cols=80  Identities=18%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCC--CCCCCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPG--LFDLSAG   85 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~--~~~~~~~   85 (107)
                      ........+|++++|+|+||||||||+++|+|+.+ ..|.+...+..........  ..+..+++++|.+.  +++.   
T Consensus       303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~---  378 (529)
T PRK15134        303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR---  378 (529)
T ss_pred             ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc---
Confidence            34455667889999999999999999999999985 6664433222111100000  01345789999873  4443   


Q ss_pred             chHHHHHHHH
Q 038901           86 SEFVGKEIVK   95 (107)
Q Consensus        86 ~~~~~~~~~~   95 (107)
                        .++.+++.
T Consensus       379 --~tv~e~l~  386 (529)
T PRK15134        379 --LNVLQIIE  386 (529)
T ss_pred             --ccHHHHHH
Confidence              34455443

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.24  E-value=3.9e-12  Score=83.18  Aligned_cols=50  Identities=20%  Similarity=0.092  Sum_probs=42.1

Q ss_pred             ccCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCce
Q 038901            5 VIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGV   54 (107)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~   54 (107)
                      .+++..+.....++|++++++|+|||||||+++.|+|+..|++|.+...+
T Consensus        36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G   85 (325)
T COG4586          36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG   85 (325)
T ss_pred             hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence            34566666778889999999999999999999999999999999655433

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=1.1e-11  Score=81.80  Aligned_cols=69  Identities=14%  Similarity=0.100  Sum_probs=45.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..+     .+|.+.......... ......+...++++|.+.+++
T Consensus        45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  119 (272)
T PRK14236         45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP  119 (272)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc
Confidence            345567899999999999999999999999763     566433322211100 000111456889999987765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.1e-11  Score=81.87  Aligned_cols=70  Identities=16%  Similarity=0.110  Sum_probs=45.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+     ..|.+.......... ......+..++|++|.+.++.
T Consensus        39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~  114 (274)
T PRK14265         39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP  114 (274)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc
Confidence            3445567899999999999999999999999753     355332222111100 000011356889999988764

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1e-11  Score=83.21  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=45.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+..     +..|.+........... .....+..++|++|.+.+++
T Consensus        65 s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~  139 (305)
T PRK14264         65 SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP  139 (305)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc
Confidence            34456789999999999999999999999975     45664333222111000 00011356889999987664

>PLN03140 ABC transporter G family member; Provisional

Probab=99.23  E-value=1.4e-11  Score=95.85  Aligned_cols=79  Identities=14%  Similarity=0.078  Sum_probs=57.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      ....++|+.++|+||||||||||+++|+|...+.   .|.+...+.....   .. .++..+|+.|.+.+++.     ++
T Consensus       185 s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~~-~~~~i~yv~Q~d~~~~~-----lT  255 (1470)
T PLN03140        185 SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---FV-PRKTSAYISQNDVHVGV-----MT  255 (1470)
T ss_pred             eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---hc-ccceeEEecccccCCCc-----Cc
Confidence            3445678999999999999999999999998776   4543322221111   11 14568999999888776     88


Q ss_pred             HHHHHHHhhcc
Q 038901           90 GKEIVKCLGMA  100 (107)
Q Consensus        90 ~~~~~~~~~~~  100 (107)
                      ++|++.+...+
T Consensus       256 V~EtL~f~a~~  266 (1470)
T PLN03140        256 VKETLDFSARC  266 (1470)
T ss_pred             HHHHHHHHHHh
Confidence            99998876543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.7e-11  Score=87.43  Aligned_cols=54  Identities=9%  Similarity=0.142  Sum_probs=40.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~   78 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+....            +..++|++|.+.
T Consensus       339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~------------~~~i~~~~q~~~  392 (530)
T PRK15064        339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE------------NANIGYYAQDHA  392 (530)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC------------ceEEEEEccccc
Confidence            345567899999999999999999999999988877432111            235677877764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.23  E-value=3.1e-12  Score=99.44  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .....++|++++|+|+||||||||++.|++++.+
T Consensus      1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            3445567899999999999999999999999987

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.23  E-value=1.1e-11  Score=88.39  Aligned_cols=68  Identities=18%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPG   78 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~   78 (107)
                      .......+|++++|+|+||||||||+++|+|+..+     ++|.+.............   .+.+..+++++|.|.
T Consensus        27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~  102 (529)
T PRK15134         27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM  102 (529)
T ss_pred             ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence            33445567899999999999999999999999986     456433222211111000   011246899999875

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.23  E-value=1.8e-11  Score=88.99  Aligned_cols=38  Identities=18%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus       339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i  376 (635)
T PRK11147        339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI  376 (635)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            44556789999999999999999999999998888743

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.22  E-value=9.4e-12  Score=98.76  Aligned_cols=80  Identities=14%  Similarity=0.065  Sum_probs=57.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+|+||||||||+++|+|+..+++|.+...+..... .... .++.+++++|.+.+++.     .++.+
T Consensus       950 sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~-~r~~IG~~pQ~~~L~~~-----LTV~E 1022 (2272)
T TIGR01257       950 NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDA-VRQSLGMCPQHNILFHH-----LTVAE 1022 (2272)
T ss_pred             EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHH-HhhcEEEEecCCcCCCC-----CCHHH
Confidence            34456789999999999999999999999999998854433322111 1111 13568999999988876     67777


Q ss_pred             HHHHhhc
Q 038901           93 IVKCLGM   99 (107)
Q Consensus        93 ~~~~~~~   99 (107)
                      ++.+...
T Consensus      1023 ~L~f~~~ 1029 (2272)
T TIGR01257      1023 HILFYAQ 1029 (2272)
T ss_pred             HHHHHHH
Confidence            7766543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=2e-11  Score=80.16  Aligned_cols=70  Identities=17%  Similarity=0.102  Sum_probs=44.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......+|++++|+|+||||||||+++|+|+..+.     .|.+.......... ......+...+++++.+.+++
T Consensus        26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~  101 (261)
T PRK14258         26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP  101 (261)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence            34556688999999999999999999999999875     23211111110000 000111356888999887765

>COG1159 Era GTPase [General function prediction only]

Probab=99.22  E-value=7.9e-11  Score=77.69  Aligned_cols=61  Identities=26%  Similarity=0.401  Sum_probs=45.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      -.++|+|++++|||||+|.|+|......  +....|+......+.........++||||+...
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p   67 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP   67 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCc
Confidence            4699999999999999999999876543  334555544444444445778899999999865

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.5e-11  Score=80.08  Aligned_cols=68  Identities=16%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~-----~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+|+||+|||||+++|+|+..     ++.|.+.......... ......+..++|++|.|.++.
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~   97 (250)
T PRK14266         24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP   97 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence            3445789999999999999999999999854     2556433222211100 000011356899999988775

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.5e-11  Score=80.19  Aligned_cols=69  Identities=14%  Similarity=0.058  Sum_probs=44.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc---cc--cccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR---AF--KASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~---~~--~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....+|++++|+|+||||||||+++|+|+.   ++  +.|.+........... .....+..++|++|.+.++.
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~   97 (250)
T PRK14245         23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP   97 (250)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence            3445678999999999999999999999863   33  3564332222111100 00111346899999987764

>cd01858 NGP_1 NGP-1

Probab=99.21  E-value=9e-11  Score=71.60  Aligned_cols=57  Identities=23%  Similarity=0.334  Sum_probs=38.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ....++++|++|+|||||+|+|.+......+.. .+.+....    ........+++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~----~~~~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQ----YITLMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEE----EEEcCCCEEEEECcCC
Confidence            346789999999999999999999766555432 22232221    1112345799999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.20  E-value=3.7e-12  Score=99.03  Aligned_cols=79  Identities=16%  Similarity=0.048  Sum_probs=57.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC-ceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-GVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....++|++++|+|+||||||||+++|+|++.++.|.+.. +........ ..+.++.+++|.|.|.+++      .+.
T Consensus       404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~-~~~lr~~Ig~V~Q~~~LF~------~TI  476 (1466)
T PTZ00265        404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN-LKWWRSKIGVVSQDPLLFS------NSI  476 (1466)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCC-HHHHHHhccEecccccchh------ccH
Confidence            33455678999999999999999999999999999986544 222111111 1222467899999999986      367


Q ss_pred             HHHHHHh
Q 038901           91 KEIVKCL   97 (107)
Q Consensus        91 ~~~~~~~   97 (107)
                      .+++.+.
T Consensus       477 ~eNI~~g  483 (1466)
T PTZ00265        477 KNNIKYS  483 (1466)
T ss_pred             HHHHHhc
Confidence            7777663

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.5e-11  Score=78.68  Aligned_cols=71  Identities=13%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ......+|++.+|+||||||||||.++|+|...+  +.|.+...+.........+..+.-++.-+|.|.=.+.
T Consensus        23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G   95 (251)
T COG0396          23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG   95 (251)
T ss_pred             cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence            3445567899999999999999999999998754  4554443343333333222223457788888876655

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=8.2e-12  Score=87.84  Aligned_cols=68  Identities=16%  Similarity=0.066  Sum_probs=50.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.+||+|+|||||||++|+|++... .+|.+..++.......... .++.+++++|+..+++.
T Consensus       372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S-lR~~Ig~VPQd~~LFnd  439 (591)
T KOG0057|consen  372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES-LRQSIGVVPQDSVLFND  439 (591)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH-hhhheeEeCCcccccch
Confidence            34456789999999999999999999999988 6665555454433333222 26789999999888864

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.8e-12  Score=89.33  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ........+|++++|+|++|||||||+..|+|...+..|.+..............+ ++.+.++.|.+.+++.
T Consensus       355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~-~e~i~vl~Qr~hlF~~  426 (573)
T COG4987         355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL-RETISVLTQRVHLFSG  426 (573)
T ss_pred             hccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH-HHHHhhhccchHHHHH
Confidence            34455667899999999999999999999999999999976555544333332222 3467788898888864

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.20  E-value=1.3e-11  Score=89.76  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=50.5

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~   82 (107)
                      .......+|++++|+|+||||||||+++|+|+..++.|.+..............   ..++..++++|.+.+++.
T Consensus        26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~  100 (648)
T PRK10535         26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH  100 (648)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence            334455688999999999999999999999999998885443332211111000   113568999999988765

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.20  E-value=4.6e-12  Score=95.64  Aligned_cols=70  Identities=19%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+.|+.++|||+|||||||+++.|.+++.|..|.+..++....... ..|.+..++.|.|.|.++..
T Consensus       372 ~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~-~~~lr~~iglV~QePvlF~~  441 (1228)
T KOG0055|consen  372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLN-LKWLRSQIGLVSQEPVLFAT  441 (1228)
T ss_pred             eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcc-hHHHHhhcCeeeechhhhcc
Confidence            34455678999999999999999999999999999997666555544333 34557789999999988875

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.20  E-value=9.6e-12  Score=96.98  Aligned_cols=67  Identities=19%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|++++|+|+||||||||+++|+|+.. ..|.+..++..........+ ++...+++|.|.+++.
T Consensus      1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l-R~~is~IpQdp~LF~G 1306 (1490)
T TIGR01271      1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW-RKAFGVIPQKVFIFSG 1306 (1490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH-HhceEEEeCCCccCcc
Confidence            3456789999999999999999999999986 56755444443333222222 5789999999999975

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.20  E-value=1.3e-11  Score=89.46  Aligned_cols=81  Identities=10%  Similarity=0.026  Sum_probs=55.9

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      ......++|+.++|+||||||||||+++|+|...+.   .|.+..++....   ... .++..+|+.|.+.+++.     
T Consensus        43 ~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~-~~~~i~yv~Q~~~~~~~-----  113 (617)
T TIGR00955        43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKE-MRAISAYVQQDDLFIPT-----  113 (617)
T ss_pred             CCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHH-HhhhceeeccccccCcc-----
Confidence            344456688999999999999999999999987653   332222221110   011 24568999999988876     


Q ss_pred             HHHHHHHHHhhcc
Q 038901           88 FVGKEIVKCLGMA  100 (107)
Q Consensus        88 ~~~~~~~~~~~~~  100 (107)
                      .+++|++.+....
T Consensus       114 lTV~e~l~f~~~~  126 (617)
T TIGR00955       114 LTVREHLMFQAHL  126 (617)
T ss_pred             CcHHHHHHHHHhc
Confidence            7888888765543

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.19  E-value=4.1e-12  Score=89.75  Aligned_cols=41  Identities=22%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      .......+|++++|+|+||||||||+++|+|+..++.|.+.
T Consensus        21 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~   61 (490)
T PRK10938         21 LPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ   61 (490)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE
Confidence            33455567899999999999999999999999999888543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.19  E-value=9e-12  Score=75.51  Aligned_cols=64  Identities=20%  Similarity=0.081  Sum_probs=44.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc---CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS---AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..+|+++-|+||+|||||||+..+.|.....-.   ....+.+....   ....++++++++|++-++++
T Consensus        25 ia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~---lPa~qRq~GiLFQD~lLFph   91 (213)
T COG4136          25 IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM---LPAAQRQIGILFQDALLFPH   91 (213)
T ss_pred             ecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc---cchhhhheeeeecccccccc
Confidence            456899999999999999999999998765422   11112211111   12235789999999999876

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.1e-12  Score=82.33  Aligned_cols=38  Identities=13%  Similarity=0.045  Sum_probs=33.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      ..-++|.+.+|+||||||||||+..++++...++|.+.
T Consensus        22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~   59 (252)
T COG4604          22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT   59 (252)
T ss_pred             eeecCCceeEEECCCCccHHHHHHHHHHhccccCceEE
Confidence            34456799999999999999999999999999998543

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.19  E-value=6e-11  Score=78.66  Aligned_cols=65  Identities=32%  Similarity=0.351  Sum_probs=45.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      .+.+.+|+|+||+|||||+|.|.+......|.+    ..+..+..+......  ..-++++||||+.+...
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~l  231 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLGL  231 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccCc
Confidence            457999999999999999999998665554432    233344333333333  35679999999976543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.19  E-value=2.3e-11  Score=73.41  Aligned_cols=38  Identities=26%  Similarity=0.252  Sum_probs=33.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+|+||+|||||+++|+|+..+..|.+
T Consensus        20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   57 (144)
T cd03221          20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV   57 (144)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence            44556789999999999999999999999999888854

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.19  E-value=4.7e-11  Score=87.11  Aligned_cols=57  Identities=14%  Similarity=0.057  Sum_probs=44.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|++++|+|+||||||||+++|+|+.++..|.+...            .+...++++|.|.+++.
T Consensus       473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~------------~~~~i~~v~Q~~~l~~~  529 (659)
T TIGR00954       473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP------------AKGKLFYVPQRPYMTLG  529 (659)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeec------------CCCcEEEECCCCCCCCc
Confidence            3445789999999999999999999999988877642211            13568899999877653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.19  E-value=2.8e-11  Score=85.62  Aligned_cols=74  Identities=14%  Similarity=0.030  Sum_probs=51.8

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee-EeeeeeEEeeCCcEEEEEeCCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT-TCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      +.......+...+|++++|||+||||||||.++|+|+..+++|.+...+.. ..........+.++-++||.|..
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~  378 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS  378 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence            445666677788999999999999999999999999999988854433322 11111111123567788888855

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.18  E-value=2.3e-11  Score=79.67  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      ..+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I   57 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF   57 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            56889999999999999999999999999999865

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.18  E-value=4.2e-11  Score=86.39  Aligned_cols=62  Identities=8%  Similarity=-0.027  Sum_probs=45.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHH
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~   95 (107)
                      ..+|++++|+|+||||||||+++|+|+..++.|.+...              ..++|++|.+.+...     .++.+++.
T Consensus       362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--------------~~i~y~~Q~~~~~~~-----~tv~e~l~  422 (590)
T PRK13409        362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------------LKISYKPQYIKPDYD-----GTVEDLLR  422 (590)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--------------eeEEEecccccCCCC-----CcHHHHHH
Confidence            36789999999999999999999999998887743211              146677777665433     45555544


Q ss_pred             H
Q 038901           96 C   96 (107)
Q Consensus        96 ~   96 (107)
                      +
T Consensus       423 ~  423 (590)
T PRK13409        423 S  423 (590)
T ss_pred             H
Confidence            3

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.17  E-value=4.8e-10  Score=81.10  Aligned_cols=62  Identities=39%  Similarity=0.527  Sum_probs=44.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      .+|+|+|++|+|||||+|.|+|...+.... ....++........+ ....+.|+||||+.+..
T Consensus       119 lrIvLVGKTGVGKSSLINSILGekvf~vss-~~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~  180 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGEVKFSTDA-FGMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSA  180 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccccccC-CCCCceEEEEEEEEE-CCceEEEEECCCCCccc
Confidence            579999999999999999999987655442 223343332222222 56788999999999763

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.16  E-value=1.9e-11  Score=74.57  Aligned_cols=38  Identities=24%  Similarity=0.206  Sum_probs=32.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      ..-.+|++++|+|+||+|||||+++|+|...+..|.+.
T Consensus        20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~   57 (157)
T cd00267          20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL   57 (157)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence            34457799999999999999999999999988877443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.16  E-value=6e-12  Score=90.14  Aligned_cols=69  Identities=14%  Similarity=0.046  Sum_probs=49.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ...++|++++|+|+||||||||++.|+|+..++.|.+..++.......... .+....++.|.|.+++..
T Consensus       363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~lf~~t  431 (555)
T TIGR01194       363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD-YRDLFSAIFADFHLFDDL  431 (555)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH-HHhhCcEEccChhhhhhh
Confidence            455688999999999999999999999999999986554433222211111 135678889988877543

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.16  E-value=1.7e-11  Score=85.76  Aligned_cols=68  Identities=13%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....+|+.++||||||||||||.+.|.|.-.+..|.++.+.....+..... ..++++|++|.--+++.
T Consensus       357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~-lG~hiGYLPQdVeLF~G  424 (580)
T COG4618         357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ-LGRHIGYLPQDVELFDG  424 (580)
T ss_pred             eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH-hccccCcCcccceecCC
Confidence            345578999999999999999999999999999997776665544433322 25789999999999986

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.16  E-value=4.1e-11  Score=74.66  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=33.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+|+||+|||||+++|+|+..++.|.+
T Consensus        19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v   56 (180)
T cd03214          19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI   56 (180)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            44556789999999999999999999999999888854

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.16  E-value=5.4e-10  Score=74.76  Aligned_cols=63  Identities=37%  Similarity=0.503  Sum_probs=42.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...+|+|+|.+|+|||||+|.|+|...+..+... ..+......... .....+.++||||+.+.
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~   99 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRT-RAGFTLNIIDTPGLIEG   99 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEE-ECCeEEEEEECCCCCch
Confidence            3478999999999999999999998764332111 111111112222 25678899999999975

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.15  E-value=4.4e-11  Score=92.88  Aligned_cols=74  Identities=12%  Similarity=0.031  Sum_probs=52.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ...+|+.++|+|+||||||||+|+|+|+..   +..|.+...+....    .. .++..+|+.|.+.+.+.     .+++
T Consensus       785 ~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~-~~~~i~yv~Q~~~~~~~-----~Tv~  854 (1394)
T TIGR00956       785 WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SS-FQRSIGYVQQQDLHLPT-----STVR  854 (1394)
T ss_pred             EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hh-hhcceeeecccccCCCC-----CCHH
Confidence            445789999999999999999999999986   44454333222111    11 24568899998877665     6777


Q ss_pred             HHHHHhh
Q 038901           92 EIVKCLG   98 (107)
Q Consensus        92 ~~~~~~~   98 (107)
                      |++.+..
T Consensus       855 E~L~~~a  861 (1394)
T TIGR00956       855 ESLRFSA  861 (1394)
T ss_pred             HHHHHHH
Confidence            7777644

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.15  E-value=1.2e-11  Score=87.51  Aligned_cols=40  Identities=13%  Similarity=0.135  Sum_probs=34.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS   52 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~   52 (107)
                      .....+|++++|+|+||||||||+++|+|+..+++|.+..
T Consensus       268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  307 (491)
T PRK10982        268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL  307 (491)
T ss_pred             eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE
Confidence            4456678999999999999999999999999988885443

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.14  E-value=1.1e-11  Score=92.67  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901            8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus         8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      ..+......++++++++.|+|||||||++++|+|...+++|.....+.............+.++|.+|...+.+.     
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~-----  654 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEE-----  654 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhh-----
Confidence            455666777889999999999999999999999999999986444333322211111124678899999888877     


Q ss_pred             HHHHHHHHHhhccCC
Q 038901           88 FVGKEIVKCLGMAKD  102 (107)
Q Consensus        88 ~~~~~~~~~~~~~~~  102 (107)
                      +|.+|.+.++.+...
T Consensus       655 lT~rEhL~~~arlrG  669 (885)
T KOG0059|consen  655 LTGREHLEFYARLRG  669 (885)
T ss_pred             ccHHHHHHHHHHHcC
Confidence            999999988877654

>PRK12289 GTPase RsgA; Reviewed

Probab=99.14  E-value=2.2e-10  Score=78.13  Aligned_cols=63  Identities=24%  Similarity=0.264  Sum_probs=42.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      .+++|+|++|+|||||||.|++......+.+    ..+.++.........  ..-++++||||+.....
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g~~liDTPG~~~~~l  239 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNGGLLADTPGFNQPDL  239 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCCcEEEeCCCcccccc
Confidence            5799999999999999999998766544422    223333333333332  22359999999987644

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.13  E-value=5.6e-11  Score=76.45  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+
T Consensus        42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   79 (224)
T cd03220          42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV   79 (224)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            34556789999999999999999999999998888753

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.13  E-value=8.6e-12  Score=95.56  Aligned_cols=69  Identities=17%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ..-.++++|||||++|||||||+++|.++..+.+|.+..++..........+ +.+...++|+|.+++.+
T Consensus      1161 ~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL-RsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL-RSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred             EEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH-HhcCeeeCCCCceecCc
Confidence            3456789999999999999999999999999998977666666555554444 67899999999888654

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.13  E-value=9.6e-11  Score=84.83  Aligned_cols=79  Identities=13%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc---ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFK---ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      ...++|+..||+||+|||||||+|+|+|.....   .|.+..++.    .......+...+||.|+..+.+.     .|+
T Consensus        51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~----~~~~~~~~~~s~yV~QdD~l~~~-----LTV  121 (613)
T KOG0061|consen   51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR----PRDSRSFRKISGYVQQDDVLLPT-----LTV  121 (613)
T ss_pred             EEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc----cCchhhhhheeEEEccccccccc-----ccH
Confidence            345678999999999999999999999988642   232222221    11112235678999999999988     999


Q ss_pred             HHHHHHhhccC
Q 038901           91 KEIVKCLGMAK  101 (107)
Q Consensus        91 ~~~~~~~~~~~  101 (107)
                      +|.+.+.+.+.
T Consensus       122 ~EtL~f~A~lr  132 (613)
T KOG0061|consen  122 RETLRFSALLR  132 (613)
T ss_pred             HHHHHHHHHhc
Confidence            99998877653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.12  E-value=1.3e-10  Score=75.84  Aligned_cols=62  Identities=26%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCC----CceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      +..++++|+||+|||||+|.|++......|.+.    .+..++........   ..++++||||+....
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~~~liDtPG~~~~~  185 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HGGLIADTPGFNEFG  185 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CCcEEEeCCCccccC
Confidence            368999999999999999999987665544221    22222222222222   346999999998654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.12  E-value=3.1e-11  Score=85.87  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAG   50 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~   50 (107)
                      ......+|++++|+|+||||||||+++|+|+.  .++.|.+
T Consensus        19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i   59 (520)
T TIGR03269        19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI   59 (520)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE
Confidence            34455678999999999999999999999996  5777743

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.12  E-value=5e-11  Score=92.58  Aligned_cols=78  Identities=22%  Similarity=0.132  Sum_probs=52.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc----cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRR----AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      ...++|+.++|+||||||||||+|+|+|..    .+..|.+...+.......  ...+...+++.|.+.+++.     .+
T Consensus        82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~--~~~r~~i~yv~Q~d~~~~~-----lT  154 (1394)
T TIGR00956        82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK--KHYRGDVVYNAETDVHFPH-----LT  154 (1394)
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH--hhcCceeEEeccccccCCC-----CC
Confidence            344678999999999999999999999986    235554333222111101  1123458899998877776     67


Q ss_pred             HHHHHHHhh
Q 038901           90 GKEIVKCLG   98 (107)
Q Consensus        90 ~~~~~~~~~   98 (107)
                      ++|++.+..
T Consensus       155 V~E~l~f~~  163 (1394)
T TIGR00956       155 VGETLDFAA  163 (1394)
T ss_pred             HHHHHHHHH
Confidence            777777654

>PRK12288 GTPase RsgA; Reviewed

Probab=99.11  E-value=2.1e-10  Score=78.16  Aligned_cols=63  Identities=25%  Similarity=0.367  Sum_probs=42.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCC----CceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      .+++|+|++|+|||||||+|++......|.+.    .+..+........+  ..-++++||||+-....
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l--~~~~~liDTPGir~~~l  272 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF--PHGGDLIDSPGVREFGL  272 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe--cCCCEEEECCCCCcccC
Confidence            56899999999999999999998776655332    22222222222222  22357999999976644

>PLN03232 ABC transporter C family member; Provisional

Probab=99.11  E-value=2.1e-10  Score=89.77  Aligned_cols=57  Identities=23%  Similarity=0.327  Sum_probs=47.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.++|+|++|||||||+++|+|...+..|..            .. .++.+.|+.|+|.+++.
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i------------~~-~~~~Iayv~Q~p~Lf~g  693 (1495)
T PLN03232        637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS------------VV-IRGSVAYVPQVSWIFNA  693 (1495)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE------------EE-ecCcEEEEcCccccccc
Confidence            34556889999999999999999999999999877631            12 25789999999999875

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.09  E-value=2.2e-11  Score=86.06  Aligned_cols=68  Identities=16%  Similarity=0.001  Sum_probs=42.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ......+|++++|+|+||||||||+++|+|+.++ ..|.+................+..+++++|.+.+
T Consensus       279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~  347 (490)
T PRK10938        279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHL  347 (490)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHh
Confidence            3445567899999999999999999999998764 4664332221110000000013457788877654

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.09  E-value=9.1e-10  Score=66.20  Aligned_cols=62  Identities=29%  Similarity=0.382  Sum_probs=40.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      |..++++|++|+|||||++.|++......+. ..+.+.........+ ......++|+||+.+.
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~   62 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDI-GGIPVRLIDTAGIRET   62 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEe-CCEEEEEEECCCcCCC
Confidence            4679999999999999999999875432221 111222221222232 4557789999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=9.4e-11  Score=85.28  Aligned_cols=40  Identities=23%  Similarity=0.230  Sum_probs=34.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .......+|++++|+|+||||||||+++|+|...++.|.+
T Consensus        19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I   58 (638)
T PRK10636         19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY   58 (638)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            3344556789999999999999999999999999888853

>PRK13409 putative ATPase RIL; Provisional

Probab=99.09  E-value=1.1e-10  Score=84.34  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      ...+|++++|+|+||+|||||+++|+|+..++.|.+.
T Consensus        95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~  131 (590)
T PRK13409         95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE  131 (590)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence            4678899999999999999999999999999988653

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.08  E-value=3.1e-11  Score=91.33  Aligned_cols=80  Identities=19%  Similarity=0.100  Sum_probs=60.2

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      ........|+.+|||||+||||||.+..|-+.+.|+.|.+..++....... ..+.+++++.|-|.|.+++.      |.
T Consensus      1008 ~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ln-l~~LR~~i~lVsQEP~LF~~------TI 1080 (1228)
T KOG0055|consen 1008 NLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWLRKQIGLVSQEPVLFNG------TI 1080 (1228)
T ss_pred             CCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCC-HHHHHHhcceeccCchhhcc------cH
Confidence            344556678999999999999999999999999999996655444433333 23346889999999999975      55


Q ss_pred             HHHHHHh
Q 038901           91 KEIVKCL   97 (107)
Q Consensus        91 ~~~~~~~   97 (107)
                      +|++.+-
T Consensus      1081 rENI~YG 1087 (1228)
T KOG0055|consen 1081 RENIAYG 1087 (1228)
T ss_pred             HHHHhcc
Confidence            5555443

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.08  E-value=2.2e-10  Score=89.62  Aligned_cols=55  Identities=18%  Similarity=0.140  Sum_probs=44.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|+.++|+||||||||||+++|+|+..+..|.+..              ...++|+.|.|.+++.
T Consensus       447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~--------------~g~iayv~Q~~~l~~~  501 (1490)
T TIGR01271       447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH--------------SGRISFSPQTSWIMPG  501 (1490)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE--------------CCEEEEEeCCCccCCc
Confidence            345678999999999999999999999999988874221              2357899999888753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00436 era GTP-binding protein Era

Probab=99.07  E-value=7e-10  Score=73.21  Aligned_cols=60  Identities=28%  Similarity=0.366  Sum_probs=39.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .++|+|++|+|||||+|+|++.......  ....++................++||||+...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs--~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~   61 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITS--PKAQTTRNRISGIHTTGASQIIFIDTPGFHEK   61 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecC--CCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence            5899999999999999999997543221  12222222222222223456789999999754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.07  E-value=1.6e-10  Score=90.15  Aligned_cols=75  Identities=12%  Similarity=-0.026  Sum_probs=50.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      ...+|+.++|+|+||||||||+++|+|....  ..|.+...+...   .... .++..+|+.|.+.+++.     .+++|
T Consensus       902 ~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~---~~~~-~~~~igyv~Q~d~~~~~-----lTV~E  972 (1470)
T PLN03140        902 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK---KQET-FARISGYCEQNDIHSPQ-----VTVRE  972 (1470)
T ss_pred             EEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC---ChHH-hhhheEEEccccccCCC-----CcHHH
Confidence            4457899999999999999999999998642  234222211110   0011 13567899999887766     67778


Q ss_pred             HHHHhh
Q 038901           93 IVKCLG   98 (107)
Q Consensus        93 ~~~~~~   98 (107)
                      ++.+..
T Consensus       973 ~L~~~a  978 (1470)
T PLN03140        973 SLIYSA  978 (1470)
T ss_pred             HHHHHH
Confidence            776643

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.07  E-value=1.5e-09  Score=75.01  Aligned_cols=60  Identities=25%  Similarity=0.238  Sum_probs=40.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .|+|||.++||||||||+|++.....+.  ....|.........+.....+.++|+||+...
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~--~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~  220 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVAD--YPFTTLVPNLGVVRVDDERSFVVADIPGLIEG  220 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccC--CCCCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence            6999999999999999999986542211  12233333333334323356899999999754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.07  E-value=8.3e-10  Score=76.46  Aligned_cols=61  Identities=34%  Similarity=0.354  Sum_probs=49.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..|+|+|++++|||||+|.|+|...+... ...+.|.+..+...+| ....+.++||+|+.+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~   64 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG   64 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcC
Confidence            57999999999999999999998876654 3446677777777777 4556999999999865

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.06  E-value=1.4e-10  Score=84.36  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=33.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      ......+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus        22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I   60 (635)
T PRK11147         22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI   60 (635)
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence            344556789999999999999999999999999888854

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.06  E-value=8.3e-10  Score=69.72  Aligned_cols=63  Identities=25%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCcee-eEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT-TTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++|+|++|+|||||+|+|+|...+..+....+.. .................++|+||+...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~   65 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST   65 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence            468999999999999999999977655443222211 000001111111235789999998754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PLN03073 ABC transporter F family; Provisional

Probab=99.06  E-value=1.9e-10  Score=84.61  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus       529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I  566 (718)
T PLN03073        529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV  566 (718)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE
Confidence            34556789999999999999999999999999888743

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.06  E-value=3.2e-10  Score=80.54  Aligned_cols=38  Identities=24%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+
T Consensus        44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI   81 (549)
T PRK13545         44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV   81 (549)
T ss_pred             EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE
Confidence            44556789999999999999999999999999888854

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.05  E-value=1e-10  Score=72.81  Aligned_cols=35  Identities=26%  Similarity=0.106  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901            7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus         7 ~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...........+|++++|+||||||||||+++|++
T Consensus         9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238           9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            34455566677889999999999999999999963

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.05  E-value=2.1e-10  Score=90.20  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKA-SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.++|+|++|||||||+++|+|...+.. |.+.              .++.++|+.|+|.+++.
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~--------------l~~~Iayv~Q~p~Lfng  693 (1622)
T PLN03130        637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV--------------IRGTVAYVPQVSWIFNA  693 (1622)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE--------------EcCeEEEEcCccccCCC
Confidence            44556889999999999999999999999998887 5321              25678999999999875

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.05  E-value=1.6e-10  Score=82.24  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=35.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceee
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTT   56 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~   56 (107)
                      ......+|.+|+|+||||+||||||+.|+|...+.+|.+..+.+.
T Consensus       341 ~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v  385 (530)
T COG0488         341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETV  385 (530)
T ss_pred             ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCce
Confidence            444556789999999999999999999999988887754444433

>PRK00089 era GTPase Era; Reviewed

Probab=99.04  E-value=2.2e-09  Score=71.42  Aligned_cols=61  Identities=28%  Similarity=0.413  Sum_probs=39.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      -.++|+|++|+|||||+|.|+|.......  ....++................++||||+...
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~   66 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP   66 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEcCCceEEEEECCCCCCc
Confidence            56899999999999999999987543221  11222222111111113457899999999765

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.04  E-value=2.3e-10  Score=83.34  Aligned_cols=38  Identities=26%  Similarity=0.192  Sum_probs=33.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+
T Consensus       332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i  369 (638)
T PRK10636        332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI  369 (638)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            34556789999999999999999999999999888853

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.03  E-value=3.4e-10  Score=88.73  Aligned_cols=55  Identities=18%  Similarity=0.161  Sum_probs=43.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|+.++|+|+||||||||+++|+|+..+..|.+.             . ...++|+.|.|.+++.
T Consensus       659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~-------------~-~g~i~yv~Q~~~l~~~  713 (1522)
T TIGR00957       659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-------------M-KGSVAYVPQQAWIQND  713 (1522)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE-------------E-CCEEEEEcCCccccCC
Confidence            44567899999999999999999999999998877421             1 2457888898887653

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd01898 Obg Obg subfamily

Probab=99.02  E-value=2.3e-09  Score=65.54  Aligned_cols=59  Identities=25%  Similarity=0.291  Sum_probs=36.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .|+|+|++|+|||||+|+|.+.... .+.. ...+.........+.......++|+||+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   60 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-IADY-PFTTLVPNLGVVRVDDGRSFVVADIPGLIE   60 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-ccCC-CccccCCcceEEEcCCCCeEEEEecCcccC
Confidence            4899999999999999999986532 1110 111222222222222223778999999854

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PTZ00243 ABC transporter; Provisional

Probab=99.02  E-value=8.4e-10  Score=86.67  Aligned_cols=54  Identities=20%  Similarity=0.242  Sum_probs=44.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|+.++|+|+||||||||+++|+|...+..|.+.             . ...++|++|.|.++.
T Consensus       681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~-------------~-~~~i~yv~Q~~~l~~  734 (1560)
T PTZ00243        681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-------------A-ERSIAYVPQQAWIMN  734 (1560)
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-------------E-CCeEEEEeCCCccCC
Confidence            34467899999999999999999999999988877421             1 356889999998865

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.02  E-value=5e-09  Score=67.90  Aligned_cols=59  Identities=24%  Similarity=0.313  Sum_probs=39.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +++|+|++|+|||||+|.|++.......  ....+.........+ ......++|+||+...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~   60 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEG   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEE-CCeEEEEEECCCcccc
Confidence            5899999999999999999997643221  112222222233333 4567788999998654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.01  E-value=1.8e-10  Score=66.13  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ....+++.++|+|+||||||||+++++
T Consensus        10 l~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          10 VDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            344567999999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.01  E-value=6.7e-10  Score=69.63  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ..+..++|+|+||||||||+++|+++..+..+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~   54 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIPPDER   54 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence            35689999999999999999999999887665

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.01  E-value=1.4e-10  Score=75.80  Aligned_cols=46  Identities=24%  Similarity=0.221  Sum_probs=39.6

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS   51 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~   51 (107)
                      +.+.........+|++++|||.||||||||-++|+++..+++|.+.
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~   71 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL   71 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence            3455566777788999999999999999999999999999998544

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.00  E-value=4.9e-09  Score=71.23  Aligned_cols=61  Identities=21%  Similarity=0.205  Sum_probs=41.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..|+|||.++||||||||+|++.....+.  ....|.........+.....+.++|+||+...
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~--ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g  219 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIAD--YPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG  219 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCC--CCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence            36999999999999999999985433221  12234444444444434457899999999754

>cd01855 YqeH YqeH

Probab=99.00  E-value=1.1e-09  Score=68.77  Aligned_cols=58  Identities=29%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc------cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKA------SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      +..++++|.+|+|||||+|+|++......      ......+++... .....  ....+++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~-~~~~~--~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL-IKIPL--GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee-EEEec--CCCCEEEeCcCC
Confidence            36799999999999999999998653221      111222222221 12222  225799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.00  E-value=2.1e-09  Score=65.51  Aligned_cols=57  Identities=28%  Similarity=0.405  Sum_probs=38.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ....++++|.+|+|||||+|+|++......+. ..+.+.....  ..  .....+++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~--~~--~~~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQE--VK--LDNKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEE--EE--ecCCEEEEECCCC
Confidence            45889999999999999999999876543321 1222222221  22  2346899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.99  E-value=6.2e-11  Score=73.85  Aligned_cols=80  Identities=14%  Similarity=-0.008  Sum_probs=54.9

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee------------eEEeeCCcEEEEEeC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK------------TTVLKDGQVVNVIDT   76 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~v~d~   76 (107)
                      ..........|.+|.|||-+||||||+++||.-+..|..|.+...........            .....+.+.++++|.
T Consensus        22 LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~  101 (256)
T COG4598          22 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH  101 (256)
T ss_pred             hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhh
Confidence            34456677789999999999999999999999999999886544333211111            001112356788888


Q ss_pred             CCCCCCCCCchHHHHHH
Q 038901           77 PGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        77 p~~~~~~~~~~~~~~~~   93 (107)
                      ..++.+     +++.++
T Consensus       102 FNLWsH-----mtvLeN  113 (256)
T COG4598         102 FNLWSH-----MTVLEN  113 (256)
T ss_pred             cchhHH-----HHHHHH
Confidence            888776     665555

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.99  E-value=1.6e-10  Score=74.60  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ...+|+.-+|+|+||||||||++.+++...+.+|.
T Consensus        53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~   87 (257)
T COG1119          53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD   87 (257)
T ss_pred             eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCc
Confidence            45677999999999999999999999999998764

>cd04163 Era Era subfamily

Probab=98.99  E-value=4.3e-09  Score=63.51  Aligned_cols=61  Identities=25%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+++++|++|+|||||+|.|++......... ...+....... .........++|+||+...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~   64 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGI-YTDDDAQIIFVDTPGIHKP   64 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEE-EEcCCeEEEEEECCCCCcc
Confidence            6799999999999999999998754322211 11111111111 1113456788999998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.99  E-value=3.1e-10  Score=71.80  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      ....++ +++|+||||||||||+++|+++..+.
T Consensus        18 l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~   49 (197)
T cd03278          18 IPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ   49 (197)
T ss_pred             eecCCC-cEEEECCCCCCHHHHHHHHHHHhccc
Confidence            344566 89999999999999999999887544

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.98  E-value=1.1e-10  Score=71.75  Aligned_cols=80  Identities=20%  Similarity=0.062  Sum_probs=53.9

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCce-e----eEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGV-T----TTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~-~----~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ..+....-+.|+.++++||+|+|||||++.|.-+..+.+|...... .    .......+...++..++++|.-.+++. 
T Consensus        18 lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph-   96 (242)
T COG4161          18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH-   96 (242)
T ss_pred             eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch-
Confidence            3445566778899999999999999999999988888887422111 0    001111111125678999999888877 


Q ss_pred             CCchHHHHHH
Q 038901           84 AGSEFVGKEI   93 (107)
Q Consensus        84 ~~~~~~~~~~   93 (107)
                          +++.++
T Consensus        97 ----ltv~en  102 (242)
T COG4161          97 ----LTVQEN  102 (242)
T ss_pred             ----hHHHHH
Confidence                555544

>PTZ00258 GTP-binding protein; Provisional

Probab=98.98  E-value=6.2e-09  Score=71.81  Aligned_cols=80  Identities=16%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC----------------CcEEEEEeCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD----------------GQVVNVIDTPGLF   80 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~----------------~~~~~v~d~p~~~   80 (107)
                      ..+..++|||.+++|||||+|+|++.....+.  ..+.|.......+.+..                ...+.++|+||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n--~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAEN--FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccC--CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            45578999999999999999999887643322  12233233333332211                1236888999998


Q ss_pred             CCCCCchHHHHHHHHHhh
Q 038901           81 DLSAGSEFVGKEIVKCLG   98 (107)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~   98 (107)
                      ......+....+++..+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir  114 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIR  114 (390)
T ss_pred             cCCcchhHHHHHHHHHHH
Confidence            654333334445555444

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.97  E-value=1e-08  Score=68.31  Aligned_cols=64  Identities=23%  Similarity=0.331  Sum_probs=43.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      ....++++|.+++|||||+|+|.+......+. ..+.|...+  ...  .....+++||||+......+
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~--~~~--~~~~~~l~DtPGi~~~~~~~  183 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQ--WIK--LGKGLELLDTPGILWPKLED  183 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEE--EEE--eCCcEEEEECCCcCCCCCCc
Confidence            44689999999999999999999976644442 223333322  122  23457899999998765433

>cd01900 YchF YchF subfamily

Probab=98.97  E-value=5.3e-09  Score=69.22  Aligned_cols=75  Identities=19%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC----------------cEEEEEeCCCCCCCCCC
Q 038901           22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG   85 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~v~d~p~~~~~~~~   85 (107)
                      ++|+|.+++|||||+|+|++.....+.  ..+.|.........+...                ..+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n--~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAAN--YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCcccc--ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            589999999999999999997763322  122222222222222111                14789999999865444


Q ss_pred             chHHHHHHHHHhh
Q 038901           86 SEFVGKEIVKCLG   98 (107)
Q Consensus        86 ~~~~~~~~~~~~~   98 (107)
                      .+....+++..++
T Consensus        79 ~~glg~~fL~~i~   91 (274)
T cd01900          79 GEGLGNKFLSHIR   91 (274)
T ss_pred             hhHHHHHHHHHHH
Confidence            3444455555544

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.97  E-value=3.7e-09  Score=63.45  Aligned_cols=56  Identities=30%  Similarity=0.474  Sum_probs=37.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .++++|.+|+|||||+|+|++....... ...+.+...  .....  ....+++||||+..
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~--~~~~~--~~~~~i~DtpG~~~  140 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHF--QTIFL--TPTITLCDCPGLVF  140 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccce--EEEEe--CCCEEEEECCCcCC
Confidence            7999999999999999999987654322 112222211  22222  23579999999864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.97  E-value=2.1e-09  Score=65.92  Aligned_cols=55  Identities=24%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      |+|++|+|||||+|+|++..... + .....+.........+ . .....++|+||+..
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~-~-~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~   56 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKV-A-NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIE   56 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccc-c-CCCceeecCcceEEEc-CCCCeEEEEeccccch
Confidence            58999999999999999875411 1 1112222222222333 3 56789999999864

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.97  E-value=2.5e-10  Score=76.13  Aligned_cols=74  Identities=11%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             cCCCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCceeeEeeeee---EEeeCCcEEEEEeCC
Q 038901            6 IDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAF-----KASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTP   77 (107)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~-----~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p   77 (107)
                      +.......+...+|++++|||.|||||||+.++|+++.+.     .+|.+...+........   ..+....+++++|.|
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence            3455566677788999999999999999999999999873     22322222221111111   123356899999998


Q ss_pred             CC
Q 038901           78 GL   79 (107)
Q Consensus        78 ~~   79 (107)
                      ..
T Consensus        98 ~~   99 (316)
T COG0444          98 MT   99 (316)
T ss_pred             hh
Confidence            43

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.95  E-value=4e-09  Score=65.50  Aligned_cols=55  Identities=35%  Similarity=0.479  Sum_probs=38.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ..++++|.+++|||||+|+|++......+. ..+.|...+  ....  ....+++|+||+
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~--~~~~--~~~~~l~DtPGi  172 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQ--EVHL--DKKVKLLDSPGI  172 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceE--EEEe--CCCEEEEECcCC
Confidence            589999999999999999999977655442 223333222  1222  345789999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01878 HflX HflX subfamily

Probab=98.94  E-value=3.8e-09  Score=66.74  Aligned_cols=60  Identities=30%  Similarity=0.344  Sum_probs=38.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..++|+|++|||||||+|.|++........  ...+.........+.......++|+||+..
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~  101 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIR  101 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCcccc
Confidence            689999999999999999999875322221  112222222223332333788999999854

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.94  E-value=8.1e-09  Score=71.82  Aligned_cols=69  Identities=29%  Similarity=0.349  Sum_probs=50.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCCCCCch
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~~~~~~   87 (107)
                      ...|..++|+|++++|||||+|+|++...+..-  ...+|+.... ..... ....+.++||.|+-+.....+
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT--dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE  283 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVT--DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVE  283 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEec--CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHH
Confidence            346789999999999999999999999887653  2334443333 33443 788999999999986644333

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.93  E-value=1.2e-08  Score=69.72  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=46.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC----------------cEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~v~d~p~~~~~~   83 (107)
                      ..++|||.+++|||||+|+|++.....+.  ..+.|.........+...                ....++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n--ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN--YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecc--cccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            57999999999999999999997632221  112222222222221111                247899999998654


Q ss_pred             CCchHHHHHHHHHhh
Q 038901           84 AGSEFVGKEIVKCLG   98 (107)
Q Consensus        84 ~~~~~~~~~~~~~~~   98 (107)
                      ...+....+.+..+.
T Consensus        81 ~~g~glg~~fL~~i~   95 (364)
T PRK09601         81 SKGEGLGNQFLANIR   95 (364)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            443344455555544

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.92  E-value=3.4e-09  Score=72.62  Aligned_cols=61  Identities=25%  Similarity=0.241  Sum_probs=39.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +..++++|.+|+|||||+|+|++......   ......+++... .....  ....+++||||+...
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~-~~~~~--~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL-IEIPL--DDGHSLYDTPGIINS  217 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE-EEEEe--CCCCEEEECCCCCCh
Confidence            46899999999999999999998643211   112223333221 12222  234589999999865

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01850 CDC_Septin CDC/Septin

Probab=98.91  E-value=3.1e-08  Score=65.75  Aligned_cols=64  Identities=23%  Similarity=0.352  Sum_probs=39.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCC------CCceeeEeeeeeEEee-CC--cEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG------SSGVTTTCEMKTTVLK-DG--QVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~------~~~~~~~~~~~~~~~~-~~--~~~~v~d~p~~~~~~   83 (107)
                      ..++++|++|+|||||+|.|++.........      ....+........... ..  ....++||||+.+..
T Consensus         5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~   77 (276)
T cd01850           5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI   77 (276)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence            5799999999999999999988765433210      0122221111111111 22  368999999998653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.91  E-value=1.5e-09  Score=82.80  Aligned_cols=77  Identities=13%  Similarity=0.041  Sum_probs=54.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHH
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~   96 (107)
                      .+|...||+|.||||||||||+|++..  +.|.+..+...........-.++..+|+-|++-..+.     .|++|.+.+
T Consensus       815 kPG~LTALMG~SGAGKTTLLdvLA~R~--t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~-----~TVrESL~f  887 (1391)
T KOG0065|consen  815 KPGVLTALMGESGAGKTTLLDVLAGRK--TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE-----LTVRESLRF  887 (1391)
T ss_pred             cCCceeehhcCCCCchHHHHHHHhcCc--ccceEEeEEEECCeeCchhhhccccceeecccccCcc-----cchHHHHHH
Confidence            467899999999999999999999975  3443332222222112212235789999999887766     889998887


Q ss_pred             hhcc
Q 038901           97 LGMA  100 (107)
Q Consensus        97 ~~~~  100 (107)
                      .+..
T Consensus       888 SA~L  891 (1391)
T KOG0065|consen  888 SAAL  891 (1391)
T ss_pred             HHHH
Confidence            6654

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.91  E-value=2e-08  Score=70.13  Aligned_cols=60  Identities=23%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .|+|+|.+++|||||||+|++..+..+.  ....|.........+.....+.++|+||+...
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~--ypfTTl~PnlG~v~~~~~~~~~laD~PGlieg  219 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIAN--YHFTTLVPNLGVVETDDGRSFVMADIPGLIEG  219 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCcccc--CCcceeceEEEEEEEeCCceEEEEECCCCccc
Confidence            7999999999999999999986543221  12233344444444433567899999999753

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.90  E-value=5.1e-09  Score=63.38  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=36.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh--CCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           22 VVLLGRTGNGKSATGNSIL--GRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~--g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      |+|+|++|+|||||+|.|+  +.....++...  .+...  ....  ......++|+||+...
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~--~t~~~--~~~~--~~~~~~~~D~~g~~~~   58 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPG--KTQLI--NFFN--VNDKFRLVDLPGYGYA   58 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCC--cceeE--EEEE--ccCeEEEecCCCcccc
Confidence            7899999999999999999  55544444221  22211  1111  2347889999997653

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.90  E-value=1.5e-08  Score=71.79  Aligned_cols=60  Identities=22%  Similarity=0.173  Sum_probs=41.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..|+|||.++||||||||.|++.....+.  ....|.........+ ....+.++|+||+...
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIad--ypfTTl~P~lGvv~~-~~~~f~laDtPGlieg  219 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIAD--YPFTTLVPNLGVVQA-GDTRFTVADVPGLIPG  219 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccc--cCcccccceEEEEEE-CCeEEEEEECCCCccc
Confidence            57999999999999999999986543221  122333333333443 4567899999999754

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.89  E-value=4.3e-09  Score=75.60  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +.....++|+.+.|.|+||||||||+++|+|+-+.-.|.+..           . ......|++|.|.+...
T Consensus       411 ~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~-----------P-~~~~~lflpQ~PY~p~G  470 (604)
T COG4178         411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM-----------P-ADSALLFLPQRPYLPQG  470 (604)
T ss_pred             cceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceec-----------C-CCCceEEecCCCCCCCc
Confidence            334556688999999999999999999999998866653221           1 13557899999988764

>cd01894 EngA1 EngA1 subfamily

Probab=98.89  E-value=1.3e-08  Score=61.25  Aligned_cols=58  Identities=29%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             EEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           23 VLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        23 ~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +|+|.+|+|||||+|.|++....... .....+.........+ ......++|+||+...
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~   58 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPD   58 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCc
Confidence            58999999999999999986432221 1112222222223333 4567889999999765

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.89  E-value=9.3e-10  Score=78.05  Aligned_cols=72  Identities=11%  Similarity=0.123  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc----ccCCCCceeeEeeee---eEEeeCCcEEEEEeCCCC
Q 038901            8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFK----ASAGSSGVTTTCEMK---TTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus         8 ~~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~----~g~~~~~~~~~~~~~---~~~~~~~~~~~v~d~p~~   79 (107)
                      ..........+|++++|+|.|||||||+.++|.|+.++.    +|.+...+.......   ........+.+++|.|.-
T Consensus        24 ~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~  102 (539)
T COG1123          24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT  102 (539)
T ss_pred             eeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence            445566677889999999999999999999999999877    343322222111111   112234789999999843

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.88  E-value=2.9e-08  Score=65.83  Aligned_cols=60  Identities=25%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ...++++|.+|+|||||+|.|.+......+. ..+.|...+  ....  ....+++||||+....
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~--~~~~--~~~~~l~DtPG~~~~~  177 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQ--WIKL--SDGLELLDTPGILWPK  177 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceE--EEEe--CCCEEEEECCCcccCC
Confidence            4679999999999999999999876544442 222333222  1222  2356999999996543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.87  E-value=2.1e-08  Score=67.99  Aligned_cols=61  Identities=23%  Similarity=0.264  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..|+|||.+++|||||+|.|++.....+.  ....|.........+.....+.++|+||+...
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~--y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~  218 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIAD--YPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG  218 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence            46999999999999999999986432211  11223333333334322367899999999754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.87  E-value=6.1e-09  Score=68.34  Aligned_cols=77  Identities=26%  Similarity=0.243  Sum_probs=44.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCc-eeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSG-VTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~   94 (107)
                      ..+.-++.|+|.+|+|||||+|+|.+-......  ..+ ++....+.... ...+...+.|+||+.+....+..-...++
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~-~~~~~l~lwDtPG~gdg~~~D~~~r~~~~  112 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLS-YDGENLVLWDTPGLGDGKDKDAEHRQLYR  112 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhh-ccccceEEecCCCcccchhhhHHHHHHHH
Confidence            344467889999999999999999942221111  011 11111111112 24578899999999986544433333333


Q ss_pred             H
Q 038901           95 K   95 (107)
Q Consensus        95 ~   95 (107)
                      +
T Consensus       113 d  113 (296)
T COG3596         113 D  113 (296)
T ss_pred             H
Confidence            3

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.87  E-value=2.4e-09  Score=66.56  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=34.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      ......+|++.+|+|.+|||||||++||.+...++.|.+
T Consensus        25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v   63 (258)
T COG4107          25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV   63 (258)
T ss_pred             cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence            345566889999999999999999999999999998853

>cd00880 Era_like Era (E

Probab=98.87  E-value=2.6e-08  Score=59.39  Aligned_cols=60  Identities=35%  Similarity=0.370  Sum_probs=38.1

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      |+|+.|+|||||+|.|++......+. ....+.................++|+||+.....
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~   60 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSP-VPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG   60 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCC-CCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence            58999999999999999876543221 1122222222222222256789999999987643

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.86  E-value=2.9e-08  Score=64.01  Aligned_cols=66  Identities=24%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCceeeEeeeeeEEee--CCcEEEEEeCCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSGVTTTCEMKTTVLK--DGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~-~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~d~p~~~~~~~   84 (107)
                      -.+|+|+|+.++|||||+|.|++.. .+..+......|...........  ....++++||||+.+...
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~   75 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER   75 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence            3689999999999999999999972 33333222233332222222211  246789999999987643

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.85  E-value=8e-09  Score=65.53  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .++|+|++|+|||||+++|++..
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~   24 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVW   24 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999873

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK13796 GTPase YqeH; Provisional

Probab=98.85  E-value=1.4e-09  Score=74.55  Aligned_cols=62  Identities=26%  Similarity=0.208  Sum_probs=38.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKA---SAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+..++++|.+|+|||||||+|++......   ......+++... .....  ..-.+++||||+...
T Consensus       159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~-~~~~l--~~~~~l~DTPGi~~~  223 (365)
T PRK13796        159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK-IEIPL--DDGSFLYDTPGIIHR  223 (365)
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee-EEEEc--CCCcEEEECCCcccc
Confidence            346799999999999999999986431110   012223333221 12222  233589999999754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.85  E-value=2.2e-08  Score=69.76  Aligned_cols=59  Identities=31%  Similarity=0.418  Sum_probs=40.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +++|+|++|+|||||+|.|++....... ...+.+.........+ ....+.++||||+..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~   59 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTGGIEE   59 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECCCCCC
Confidence            3799999999999999999987643222 1123333333344444 566789999999854

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04171 SelB SelB subfamily

Probab=98.85  E-value=1.9e-08  Score=60.89  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=36.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc-CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      +++++|.+|+|||||+|.|++....... ......+.........+.......++||||..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~   62 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE   62 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence            6899999999999999999975321110 00112222222222333225578899999974

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.84  E-value=4.8e-09  Score=74.33  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=41.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ....++|..+.|+||||||||||+++|.|+-+...|...            .....+++|++|-|.+-
T Consensus       502 tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~------------~P~~~~mFYIPQRPYms  557 (728)
T KOG0064|consen  502 TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS------------IPRPNNIFYIPQRPYMS  557 (728)
T ss_pred             eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee------------cCCCcceEeccCCCccC
Confidence            345567899999999999999999999998775444211            11235578888888654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.84  E-value=4.1e-08  Score=72.95  Aligned_cols=61  Identities=26%  Similarity=0.388  Sum_probs=43.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      .+++|+|.+|||||||+|.|+|.....+.  ..+.|.........+ ......++|+||.++..
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn--~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~   64 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLT   64 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCceEeeEEEEEEc-CceEEEEEECCCccccc
Confidence            57999999999999999999997653322  233444333333333 45678999999998764

>PRK15494 era GTPase Era; Provisional

Probab=98.84  E-value=3.1e-08  Score=67.47  Aligned_cols=59  Identities=29%  Similarity=0.442  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .++|+|.+|+|||||+|.|++....... .....|.........+ ......++||||+..
T Consensus        54 kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~  112 (339)
T PRK15494         54 SVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFE  112 (339)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCC
Confidence            8999999999999999999986543211 1111221111122232 455678999999964

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.84  E-value=2.2e-10  Score=80.60  Aligned_cols=69  Identities=17%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|+.++|+||+|+||||+++.|.+.....+|.+..++........... +..++.|+|+..++++
T Consensus       558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL-Rs~IGVVPQDtvLFNd  626 (790)
T KOG0056|consen  558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL-RSSIGVVPQDTVLFND  626 (790)
T ss_pred             eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH-HHhcCcccCcceeecc
Confidence            34456789999999999999999999999998888866555554443333232 4567777777666643

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.84  E-value=1.3e-08  Score=62.01  Aligned_cols=60  Identities=15%  Similarity=0.077  Sum_probs=37.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCC--CCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +++|+|++|+|||||++.|++......+..  ....+.........+ ......++|+||...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~   62 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES   62 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh
Confidence            378999999999999999987654322211  111222222222333 456788999998754

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04155 Arl3 Arl3 subfamily

Probab=98.83  E-value=1.3e-08  Score=62.51  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+...++|+|++|+|||||++.|.+..
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~   38 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASED   38 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCC
Confidence            345789999999999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.83  E-value=3.1e-08  Score=69.60  Aligned_cols=64  Identities=22%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .++..++|+|++|+|||||+|.|++...+.... ..+.+.........+ ....+.++||||+...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~  264 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEGDFEL-NGILIKLLDTAGIREH  264 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEEEEEE-CCEEEEEeeCCCcccc
Confidence            355789999999999999999999875433221 122233322333343 5567789999999654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.83  E-value=3.2e-09  Score=72.65  Aligned_cols=63  Identities=40%  Similarity=0.506  Sum_probs=41.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC----ceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----GVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ++++++|+|+||+|||||+|.|++...+..|.+..    +............ . ...+++||||+...
T Consensus       194 ~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l-~-~~~~l~DtpG~~~~  260 (356)
T PRK01889        194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL-P-SGGLLIDTPGMREL  260 (356)
T ss_pred             cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEe-c-CCCeecCCCchhhh
Confidence            46899999999999999999999998887774321    1111111111111 1 23478899999543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.83  E-value=4.1e-08  Score=65.28  Aligned_cols=78  Identities=23%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccC-C-----CCceeeEeeeeeEEee-C--CcEEEEEeCCCCCCCCCCchHHH
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASA-G-----SSGVTTTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~-~-----~~~~~~~~~~~~~~~~-~--~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      ..++++|.+|+|||||+|.|++........ .     ....+........... .  .....++||||+.+. ......+
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~-i~n~~~~   83 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN-IDNSDCW   83 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS-STHCHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc-ccchhhh
Confidence            579999999999999999999875543320 0     0011111111111111 1  236789999999764 2333445


Q ss_pred             HHHHHHhh
Q 038901           91 KEIVKCLG   98 (107)
Q Consensus        91 ~~~~~~~~   98 (107)
                      ..+..++.
T Consensus        84 ~~I~~yI~   91 (281)
T PF00735_consen   84 EPIVDYIE   91 (281)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.83  E-value=5.2e-09  Score=54.31  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +..+.|.|+||+|||||+.+|.-...
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            45899999999999999999875543

>cd01856 YlqF YlqF

Probab=98.82  E-value=3.3e-08  Score=61.10  Aligned_cols=58  Identities=24%  Similarity=0.402  Sum_probs=38.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      .+..++++|.+|+|||||+|.|++......+ ...+.+.....  ...  .....++||||++
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~--~~~--~~~~~~iDtpG~~  171 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQW--IKI--SPGIYLLDTPGIL  171 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEE--EEe--cCCEEEEECCCCC
Confidence            3468999999999999999999986543322 11223322222  222  2457899999974

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.82  E-value=3.5e-08  Score=61.73  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=37.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....++|+|.+|+|||||+|.|++..  .....  ..+.+......  .  ......++|+||+..
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~t~~~~~~--~--~~~~l~l~DtpG~~~   82 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSK--TPGRTQLINFF--E--VNDKLRLVDLPGYGY   82 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC--CCCceeEEEEE--e--cCCeEEEeCCCCCCC
Confidence            34679999999999999999999853  22111  11222221111  1  235678999999764

>PLN03073 ABC transporter F family; Provisional

Probab=98.81  E-value=4.4e-09  Score=77.51  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=26.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ......|++++|||+||||||||+++|+|..
T Consensus       197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~  227 (718)
T PLN03073        197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA  227 (718)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3445568999999999999999999999864

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.81  E-value=3.9e-08  Score=61.06  Aligned_cols=60  Identities=22%  Similarity=0.315  Sum_probs=37.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....++|+|++|+|||||+|.|++.. ..... ...+.+......  ..  .....++|+||+..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~~--~~--~~~~~liDtpG~~~   76 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTS-KTPGRTQLINFF--EV--NDGFRLVDLPGYGY   76 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCccccc-CCCCcceEEEEE--Ee--CCcEEEEeCCCCcc
Confidence            445789999999999999999999864 11111 111222222211  11  23578999999864

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.81  E-value=3.5e-08  Score=62.14  Aligned_cols=64  Identities=20%  Similarity=0.332  Sum_probs=42.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      |.....-|+++|+|++|||||||+|++... +..+ ...+.|.......  +  ....+++|-||+.-..
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS-ktPGrTq~iNff~--~--~~~~~lVDlPGYGyAk   84 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTS-KTPGRTQLINFFE--V--DDELRLVDLPGYGYAK   84 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecC-CCCCccceeEEEE--e--cCcEEEEeCCCccccc
Confidence            334456699999999999999999999653 2222 2233444333332  2  2337899999997654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.80  E-value=3e-08  Score=60.54  Aligned_cols=58  Identities=29%  Similarity=0.244  Sum_probs=37.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +++|+|.+|+|||||+|.|++........  ...+.........+ ......++||||+.+
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~   59 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPY--PFTTKSLFVGHFDY-KYLRWQVIDTPGLLD   59 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCC--CCcccceeEEEEcc-CceEEEEEECCCcCC
Confidence            68999999999999999999865432211  11122222222222 346789999999853

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.79  E-value=1.5e-08  Score=67.69  Aligned_cols=80  Identities=20%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhh
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~   98 (107)
                      -..++|||-++||||||+|+|....+....  ....|..++.....+.......|.|-||+.......+-...++++.+.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~--YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAH--YAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccc--cceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence            356899999999999999999987664332  223444444455555445568999999998776666666677777776


Q ss_pred             cc
Q 038901           99 MA  100 (107)
Q Consensus        99 ~~  100 (107)
                      ++
T Consensus       274 R~  275 (366)
T KOG1489|consen  274 RC  275 (366)
T ss_pred             hh
Confidence            54

>cd01895 EngA2 EngA2 subfamily

Probab=98.79  E-value=4.4e-08  Score=59.58  Aligned_cols=61  Identities=28%  Similarity=0.369  Sum_probs=37.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+++++|..|+|||||+|.|++......+. ....+.......... ......++|+||+...
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~   63 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRK   63 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccc
Confidence            569999999999999999999865322211 111111111122222 3455789999998654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.79  E-value=5.7e-08  Score=70.28  Aligned_cols=62  Identities=27%  Similarity=0.417  Sum_probs=47.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      ..++++|.+++|||||+|.|+|.....+.  ..+.|.......... +.+...++|.||.++...
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~   65 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTA   65 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCC
Confidence            45999999999999999999998876543  345566555555554 566789999999997643

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.78  E-value=1.1e-08  Score=63.77  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      .......|+++-+|||||||||||+-.++|+.+..+.
T Consensus        18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGs   54 (248)
T COG4138          18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGS   54 (248)
T ss_pred             cccccccceEEEEECCCCccHHHHHHHHhCCCCCCce
Confidence            3456668899999999999999999999999987543

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.78  E-value=9.3e-09  Score=70.49  Aligned_cols=63  Identities=27%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCcee-eEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT-TTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..||++|.+|+|||||||+|.|+-..+.|....+.. +.........+....+.++|-||+...
T Consensus        36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~   99 (376)
T PF05049_consen   36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTP   99 (376)
T ss_dssp             EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCC
Confidence            679999999999999999999876655543332221 111111222234456889999998644

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.77  E-value=3.8e-08  Score=67.32  Aligned_cols=60  Identities=32%  Similarity=0.331  Sum_probs=40.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ...++|+|.+++|||||+|.|++.......  ..+.|.........+.....+.++||||+.
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~  248 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFI  248 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccc
Confidence            378999999999999999999986532111  112222222233343345678999999984

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.77  E-value=4.9e-08  Score=58.50  Aligned_cols=54  Identities=22%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ++|+|++|+|||||+|.|++........    .+.......... ......+.|+||..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~~D~~g~~   55 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI----PTVGFNMRKVTK-GNVTLKVWDLGGQP   55 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCcc----CCCCcceEEEEE-CCEEEEEEECCCCH
Confidence            7899999999999999999874322111    111111111121 33556788888754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.76  E-value=2.4e-08  Score=60.21  Aligned_cols=56  Identities=29%  Similarity=0.450  Sum_probs=36.4

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           24 LLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        24 liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      |+|.+|+|||||+|.+++..... +. ..+.+.........+ ......++||||+...
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~-~~-~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~   56 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKV-GN-WPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSL   56 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccc-cC-CCCcccccceEEEee-CCeEEEEEECCCcccc
Confidence            58999999999999999875322 21 112222222233344 3457889999998754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.76  E-value=6.3e-08  Score=65.54  Aligned_cols=63  Identities=27%  Similarity=0.377  Sum_probs=44.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      ...++++|-+++|||||||.|++......+. ..+.|...+    ...-....+++||||+.......
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q----~i~~~~~i~LlDtPGii~~~~~~  194 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQ----WIKLDDGIYLLDTPGIIPPKFDD  194 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceE----EEEcCCCeEEecCCCcCCCCccc
Confidence            3679999999999999999999988766552 223332222    12234557999999998775444

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.75  E-value=1.2e-07  Score=56.46  Aligned_cols=60  Identities=28%  Similarity=0.380  Sum_probs=37.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      .+++++|..|+|||||++.|++...+....  ...+.......... ..  ....++|+||....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~   63 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYK--PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDY   63 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCC--CCceeeeeEEEEEE-CCEEEEEEEEECCCcccc
Confidence            468999999999999999999877332221  11222222121222 33  45788999996443

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK04213 GTP-binding protein; Provisional

Probab=98.74  E-value=1.9e-07  Score=58.85  Aligned_cols=57  Identities=25%  Similarity=0.325  Sum_probs=36.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....++|+|++|+|||||+|.|++.... .+ ...+.+...  ....+  . ...++|+||+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~--~~~~~--~-~~~l~Dt~G~~~   64 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKP--NHYDW--G-DFILTDLPGFGF   64 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCc--eEEee--c-ceEEEeCCcccc
Confidence            3467999999999999999999986532 22 111222211  12222  2 578999999743

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.74  E-value=6e-08  Score=67.81  Aligned_cols=60  Identities=28%  Similarity=0.334  Sum_probs=41.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+|+|+|.+|+|||||+|.|++........ ..+.+.........+ ......++||||+..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~   61 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEW-LGREFILIDTGGIEP   61 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEE-CCcEEEEEECCCCCC
Confidence            469999999999999999999876432221 122333333333444 457789999999976

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.74  E-value=8e-09  Score=71.14  Aligned_cols=45  Identities=18%  Similarity=0.145  Sum_probs=38.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE   59 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~   59 (107)
                      .-++|+.+-|+|.||||||||+..|+|+..|.+|.+..+++....
T Consensus       345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~  389 (546)
T COG4615         345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA  389 (546)
T ss_pred             EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence            345789999999999999999999999999999977666655433

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.73  E-value=8.7e-09  Score=65.93  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+++|+||||||||||+++|+
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.73  E-value=6.7e-08  Score=68.03  Aligned_cols=63  Identities=30%  Similarity=0.389  Sum_probs=41.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+..++|+|.+|+|||||+|.|++........ ..+.+.........+ ....+.++||||+.+.
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~  276 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHINL-DGIPLRLIDTAGIRET  276 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEEE-CCeEEEEEeCCCCCCC
Confidence            45789999999999999999999865432221 112222222223333 4567899999998653

>PRK11058 GTPase HflX; Provisional

Probab=98.73  E-value=3.9e-08  Score=68.77  Aligned_cols=60  Identities=28%  Similarity=0.262  Sum_probs=39.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..++|+|.+++|||||+|.|++.......  ..+.|.........+.......++||||+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r  257 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIR  257 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence            47999999999999999999986543221  1122322222333443334678999999954

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.73  E-value=1.2e-08  Score=63.91  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      |..++|+||||||||||++.|++...+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            478999999999999999999887643

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.73  E-value=5.5e-09  Score=67.78  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +.+++|+||||||||||+++|++.
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~~~   46 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIRFV   46 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            579999999999999999999843

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.72  E-value=7.9e-09  Score=73.11  Aligned_cols=41  Identities=24%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCcee
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT   55 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~   55 (107)
                      ......++++|||||+|||||++.+++...+..|.+.....
T Consensus       412 gid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H  452 (614)
T KOG0927|consen  412 GIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH  452 (614)
T ss_pred             ccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence            34455889999999999999999999999999996554443

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.71  E-value=2e-07  Score=65.22  Aligned_cols=63  Identities=29%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+|.+|+|||||+|.|++......+. ..+.+.........+ ......++||||+...
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~  234 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRK  234 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCC
Confidence            45789999999999999999999876443321 122232222222333 5567789999998654

>TIGR00235 udk uridine kinase

Probab=98.71  E-value=9.6e-09  Score=65.35  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .+++.+++|+|+||||||||+++|+++...
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356799999999999999999999987653

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.71  E-value=1.1e-08  Score=65.40  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ++.+++|+|+||||||||+++|++.
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~   51 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYA   51 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheee
Confidence            3679999999999999999999853

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.71  E-value=1.1e-08  Score=79.01  Aligned_cols=57  Identities=23%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....++|+.++++|+.|||||||+.+|+|.....+|.             ... .....|+.|.|-+++.
T Consensus       540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~-------------v~v-~gsiaYv~Q~pWI~ng  596 (1381)
T KOG0054|consen  540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS-------------VAV-NGSVAYVPQQPWIQNG  596 (1381)
T ss_pred             eeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccce-------------EEE-cCeEEEeccccHhhCC
Confidence            34456789999999999999999999999999887772             122 4568899999988765

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.70  E-value=1.3e-08  Score=64.56  Aligned_cols=27  Identities=19%  Similarity=0.166  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+++++|+||||+|||||+++|++..
T Consensus        23 ~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          23 EKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            346899999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.70  E-value=1e-07  Score=64.02  Aligned_cols=62  Identities=26%  Similarity=0.215  Sum_probs=45.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....+.|.|.+++|||||+++|++..+....  ....|...+..+.+. ....+-++||||+.+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~--YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDR  228 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP--YPFTTKGIHVGHFER-GYLRIQVIDTPGLLDR  228 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCC--CCccccceeEeeeec-CCceEEEecCCcccCC
Confidence            3478999999999999999999987664432  223344444455443 5668899999999875

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.70  E-value=7.1e-08  Score=67.05  Aligned_cols=63  Identities=29%  Similarity=0.328  Sum_probs=45.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..-.++|+|.+++|||||+|.|+|......+. ..+.|...-....++ ..+...++||.|+-..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk  239 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTAGIRRK  239 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECCCCCcc
Confidence            34789999999999999999999998766542 222333333333443 6788999999998643

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.70  E-value=9.6e-08  Score=63.22  Aligned_cols=61  Identities=25%  Similarity=0.376  Sum_probs=40.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc--cc--------------CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFK--AS--------------AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~--~g--------------~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +++|+|+.|+|||||++.|+......  .|              ....+.+.........| ......++||||..++
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH
Confidence            48999999999999999996322210  01              11234444444455555 5678889999998654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd00154 Rab Rab family

Probab=98.69  E-value=8.4e-08  Score=57.40  Aligned_cols=58  Identities=22%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      +++++|++|+|||||++.+.+......-........  ........ ......++|+||..
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~D~~g~~   60 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDF--KSKTIEIDGKTVKLQIWDTAGQE   60 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeee--EEEEEEECCEEEEEEEEecCChH
Confidence            589999999999999999987665433111111111  11111111 12456788999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.69  E-value=4.6e-08  Score=65.95  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhhc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~~   99 (107)
                      .-|+|||-+++||||||++++...+...-  ....|..+............+.+.|-||+.+.-....-...++++++.+
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIad--YpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIAD--YPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccC--CccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            35899999999999999999987665432  2334444444444444577899999999998755555667777777776


Q ss_pred             cC
Q 038901          100 AK  101 (107)
Q Consensus       100 ~~  101 (107)
                      +.
T Consensus       238 t~  239 (369)
T COG0536         238 TR  239 (369)
T ss_pred             hh
Confidence            53

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.69  E-value=1.1e-07  Score=57.92  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee--CCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK--DGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~d~p~~~~   81 (107)
                      .++|+|+.|+|||||++.|++......  .....+...........  ......++||||...
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~   62 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA   62 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence            589999999999999999987543221  11122222222222221  245778999999743

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.68  E-value=3e-08  Score=59.66  Aligned_cols=25  Identities=24%  Similarity=0.640  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++++|||+.|||||||+++|.+...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~   26 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI   26 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC
Confidence            5799999999999999999998654

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=3.3e-08  Score=69.23  Aligned_cols=66  Identities=21%  Similarity=0.202  Sum_probs=48.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeE-eeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTT-CEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ......|..++|+|++++|||||+|+|+.......+  ...+++. .-...+. .+...+++.||.|+-.
T Consensus       262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS--pv~GTTRDaiea~v~-~~G~~v~L~DTAGiRe  328 (531)
T KOG1191|consen  262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS--PVPGTTRDAIEAQVT-VNGVPVRLSDTAGIRE  328 (531)
T ss_pred             HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC--CCCCcchhhheeEee-cCCeEEEEEecccccc
Confidence            334456689999999999999999999998775543  2233333 2223334 4788999999999976

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.68  E-value=2.3e-08  Score=64.48  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=28.2

Q ss_pred             ccCCCCCCCCCCCCceEEEEEcCCCCCHHHHH-HHH
Q 038901            5 VIDGDWKPTSPSNGERTVVLLGRTGNGKSATG-NSI   39 (107)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~liG~nG~GKSTll-~~l   39 (107)
                      .+...........+|++++|+|+||||||||+ ..|
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            34456667778889999999999999999995 444

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.68  E-value=1.4e-08  Score=70.06  Aligned_cols=70  Identities=16%  Similarity=0.041  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee--eEEeeCCcEEEEEeCCCC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK--TTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~v~d~p~~   79 (107)
                      .........+|+.++|||.||||||||-.+|++++... |.+...++......  .....+++.-.|||+|.-
T Consensus       303 Vd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg  374 (534)
T COG4172         303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG  374 (534)
T ss_pred             eccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence            33445566788999999999999999999999999877 54443333322211  112234667788898843

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.68  E-value=1.8e-08  Score=62.77  Aligned_cols=28  Identities=29%  Similarity=0.459  Sum_probs=25.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .|++++|+|+||||||||+++|+++..+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4689999999999999999999998754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.67  E-value=1.3e-07  Score=66.90  Aligned_cols=60  Identities=33%  Similarity=0.402  Sum_probs=40.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+|+|+|.+|+|||||+|.|++...+... ...+.+.........+ ......++||||+..
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~   98 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEP   98 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCC
Confidence            57999999999999999999986543222 1222333333333333 456688999999863

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.67  E-value=5.1e-08  Score=60.31  Aligned_cols=60  Identities=28%  Similarity=0.345  Sum_probs=37.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCC--------------CCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--------------SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~--------------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +++|+|..|+|||||+|.|++.........              ..+.+.........+ ......++|+||...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~   74 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED   74 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH
Confidence            379999999999999999988765432200              011111211222222 356778999999754

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.8e-08  Score=62.49  Aligned_cols=41  Identities=24%  Similarity=0.214  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ..........|++++|=||+|+|||||+++|-+.+.+++|.
T Consensus        27 ~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~   67 (235)
T COG4778          27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ   67 (235)
T ss_pred             eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce
Confidence            34455667789999999999999999999999999998884

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.67  E-value=6.4e-09  Score=69.32  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=24.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...+|||.|+||||||||++.|.++..
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            448999999999999999999988765

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.66  E-value=1.8e-07  Score=63.59  Aligned_cols=80  Identities=23%  Similarity=0.342  Sum_probs=47.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc----CCC--CceeeEeeeeeEEeeC---CcEEEEEeCCCCCCCCCCchH
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS----AGS--SGVTTTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g----~~~--~~~~~~~~~~~~~~~~---~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      -...++++|++|+||||++|.|++......-    ...  ...+.........+..   .....|+||||+.+.-.. ..
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~  100 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK  100 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence            3468999999999999999999987332221    000  0111112222111111   346799999999876433 45


Q ss_pred             HHHHHHHHhh
Q 038901           89 VGKEIVKCLG   98 (107)
Q Consensus        89 ~~~~~~~~~~   98 (107)
                      +++.++.++.
T Consensus       101 ~we~I~~yI~  110 (373)
T COG5019         101 CWEPIVDYID  110 (373)
T ss_pred             cHHHHHHHHH
Confidence            5555555543

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.66  E-value=2.1e-08  Score=70.51  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=29.3

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      .......+|++++|+|+||||||||++  .++..+..|
T Consensus        24 ~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG   59 (504)
T TIGR03238        24 KFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG   59 (504)
T ss_pred             CCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence            445566788999999999999999999  566666665

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.66  E-value=2.1e-08  Score=64.80  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ..+..+++|.|+||||||||++.|++...+..|.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            3456899999999999999999999998877663

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.66  E-value=1.7e-08  Score=65.92  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      ...++|+|+||||||||+++|++...+.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~   52 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGIT   52 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence            3678999999999999999999887654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.65  E-value=1.5e-07  Score=62.94  Aligned_cols=64  Identities=23%  Similarity=0.297  Sum_probs=45.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      +-..+++||++++|||||.|.+.|.......  ....|+......+.........++||||+...+
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~  134 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKK  134 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence            4467999999999999999999998664432  233333333222222357789999999998653

>cd00879 Sar1 Sar1 subfamily

Probab=98.65  E-value=1.6e-07  Score=58.61  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=34.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ...++|+|++|+|||||++.+.+......     ..+.........+ ......++|+||..
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~   74 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHE   74 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCH
Confidence            36679999999999999999987543111     1111111122222 34566788988853

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01861 Rab6 Rab6 subfamily

Probab=98.65  E-value=1.6e-07  Score=56.83  Aligned_cols=58  Identities=21%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF   80 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~   80 (107)
                      .++|+|+.|+|||||++.+++......-  ....+.........+.. .....++|+||..
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~   60 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYLEDKTVRLQLWDTAGQE   60 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence            5899999999999999999876543211  11111111111222211 1346899999853

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.65  E-value=1.8e-07  Score=56.76  Aligned_cols=58  Identities=21%  Similarity=0.228  Sum_probs=34.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      .++++|++|+|||||++.+++.......  ................ ......++|+||..
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKY--LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP   60 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence            5899999999999999999986543211  1111111111111111 13456788999853

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.64  E-value=1.7e-07  Score=56.83  Aligned_cols=59  Identities=22%  Similarity=0.205  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      ..++++|++|+|||||++.+++...........+....  .....+. ......++|+||..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~   61 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQE   61 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchH
Confidence            46899999999999999999987643311111111111  1112221 13456788999853

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.64  E-value=4.2e-07  Score=63.15  Aligned_cols=25  Identities=28%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++|+|.+++|||||+|+|++...
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~   26 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADV   26 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcc
Confidence            3699999999999999999998754

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.63  E-value=1.8e-07  Score=56.66  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=33.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF   80 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~   80 (107)
                      +++++|++|+|||||++.+++......-  ................. .....++|+||..
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   60 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE   60 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence            5899999999999999999876532211  11111111111222211 1356788999853

Rab GTPases are implicated in vesicle trafficking.

>cd04154 Arl2 Arl2 subfamily

Probab=98.63  E-value=2.1e-07  Score=57.30  Aligned_cols=56  Identities=25%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ...++++|++|+|||||++.+.+......     ..+.........+ ......++|+||..
T Consensus        14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~   69 (173)
T cd04154          14 EMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQK   69 (173)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCH
Confidence            36799999999999999999987632211     1111111122222 35567899999875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.63  E-value=7.7e-08  Score=61.26  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=38.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------CCCCceeeEeeeeeEEeeCCcEE
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSGVTTTCEMKTTVLKDGQVV   71 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   71 (107)
                      +++|+|+.|+|||||++.|+........                             ....+.+.........+ .....
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            4899999999999999999765432210                             01123333333333444 56678


Q ss_pred             EEEeCCCCCC
Q 038901           72 NVIDTPGLFD   81 (107)
Q Consensus        72 ~v~d~p~~~~   81 (107)
                      .++||||...
T Consensus        80 ~liDTpG~~~   89 (208)
T cd04166          80 IIADTPGHEQ   89 (208)
T ss_pred             EEEECCcHHH
Confidence            8999999743

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.62  E-value=4e-08  Score=60.97  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      |++++|+||||||||||++.|++...
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            57899999999999999999998754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.62  E-value=2.6e-07  Score=60.06  Aligned_cols=61  Identities=25%  Similarity=0.373  Sum_probs=38.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc--ccC--------------CCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFK--ASA--------------GSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~--~g~--------------~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .++|+|+.|+|||||++.|+......  .|.              ...+.+.........+ ......++||||..++
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch
Confidence            37999999999999999997643211  010              1112222223333444 5678899999998764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01862 Rab7 Rab7 subfamily

Probab=98.62  E-value=2.3e-07  Score=56.65  Aligned_cols=23  Identities=30%  Similarity=0.639  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +++++|+.|+|||||++.+.+..
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~   24 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKK   24 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=98.62  E-value=2.4e-07  Score=56.15  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +++++|++|+|||||++.+++...
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~   25 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTF   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            589999999999999999987543

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01859 MJ1464 MJ1464

Probab=98.61  E-value=3.5e-07  Score=55.61  Aligned_cols=57  Identities=32%  Similarity=0.434  Sum_probs=36.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ....++++|.+|+|||||+|.+.+......+. ..+.+....    ........+++||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~----~~~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQ----LVKITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeE----EEEcCCCEEEEECcCC
Confidence            34678999999999999999999755433221 112222111    1112346789999996

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.61  E-value=7.6e-08  Score=68.76  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ......|..+.|.||||||||||+++|.|+-+...|.
T Consensus       455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~  491 (659)
T KOG0060|consen  455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK  491 (659)
T ss_pred             eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence            3445567999999999999999999999988766663

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.61  E-value=1.5e-07  Score=62.06  Aligned_cols=60  Identities=23%  Similarity=0.429  Sum_probs=36.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc--ccCCC--------------CceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFK--ASAGS--------------SGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~--~g~~~--------------~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +++|+|++|+|||||++.|++.....  .|...              ...+.........+ ......++|+||..+
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH
Confidence            37999999999999999997543221  11110              11111222223333 456778999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.61  E-value=4.1e-08  Score=62.13  Aligned_cols=28  Identities=32%  Similarity=0.448  Sum_probs=25.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+|+.++|+|++|||||||++.|++...
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4679999999999999999999999864

>cd04113 Rab4 Rab4 subfamily

Probab=98.60  E-value=2.3e-07  Score=56.23  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +++|+|+.|+|||||++.+++...
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~   25 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKF   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC
Confidence            589999999999999999987543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01866 Rab2 Rab2 subfamily

Probab=98.60  E-value=2.7e-07  Score=56.56  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+++|+|++|+|||||++.+++...
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~   29 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRF   29 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4799999999999999999987543

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.59  E-value=2.2e-07  Score=65.82  Aligned_cols=61  Identities=30%  Similarity=0.378  Sum_probs=39.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ....++|+|++|+|||||+|.|++....... ...+.+.........+ ......++||||+.
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~  270 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLR  270 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcc
Confidence            3478999999999999999999987542211 1112222222222333 45566899999984

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.58  E-value=1.3e-07  Score=57.78  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.|+++|++|+|||||+|+|.|..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~   25 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNY   25 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCC
Confidence            369999999999999999999864

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.58  E-value=3.1e-07  Score=59.73  Aligned_cols=82  Identities=26%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc-----CCCCceeeEeeeeeEEee-C--CcEEEEEeCCCCCCCCCCch
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-----AGSSGVTTTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSE   87 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g-----~~~~~~~~~~~~~~~~~~-~--~~~~~v~d~p~~~~~~~~~~   87 (107)
                      ..-...|+++|++|.|||||+|.|..-...+++     ......+........... +  +-...|+|||||.+. ...+
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq-InN~  121 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ-INND  121 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc-cCcc
Confidence            334478999999999999999999654332221     111222322222211111 1  346789999999875 3334


Q ss_pred             HHHHHHHHHhh
Q 038901           88 FVGKEIVKCLG   98 (107)
Q Consensus        88 ~~~~~~~~~~~   98 (107)
                      ..++-+.+++.
T Consensus       122 ncWePI~kyIn  132 (336)
T KOG1547|consen  122 NCWEPIEKYIN  132 (336)
T ss_pred             chhHHHHHHHH
Confidence            55555555543

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=2.7e-07  Score=62.90  Aligned_cols=65  Identities=28%  Similarity=0.308  Sum_probs=38.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc----cCC-CCceeeEeeeeeEEeeC---CcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKA----SAG-SSGVTTTCEMKTTVLKD---GQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~----g~~-~~~~~~~~~~~~~~~~~---~~~~~v~d~p~~~~~~   83 (107)
                      ...++++|++|.|||||+|.|++......    +.. ....+............   .-...|+||||+.+.-
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v   93 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV   93 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence            36799999999999999999988733221    000 11111111111112111   2367899999998753

>cd04169 RF3 RF3 subfamily

Probab=98.58  E-value=1.4e-07  Score=62.34  Aligned_cols=62  Identities=26%  Similarity=0.352  Sum_probs=39.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc--ccCC------------------CCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFK--ASAG------------------SSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~--~g~~------------------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ++|+|+|+.|+|||||++.|+......  .|..                  .++.+.........+ ......++||||.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~   81 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH   81 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence            679999999999999999997532211  1111                  111222222234444 5678899999998


Q ss_pred             CCC
Q 038901           80 FDL   82 (107)
Q Consensus        80 ~~~   82 (107)
                      .++
T Consensus        82 ~df   84 (267)
T cd04169          82 EDF   84 (267)
T ss_pred             hHH
Confidence            653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		1e-17
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		2e-12
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		6e-12
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		6e-12
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		1e-11
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		4e-09

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 14  SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNV 73
            P N +  +VL+G+TG GKSATGNSILGR+ F +   +  +T  CE +++  K+ ++V V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-V 82
Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           +DTPG+FD    +    KEI++C+ +   G HA
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 115

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
            + ++V +IDTP +F      E + KE+ +C  ++  G H
Sbjct: 69  GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH 107

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVID 75
           S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC        + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
           TP +F      E + KE+ +C  ++  G H
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPH 90

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105
            + ++V +IDTP  F      E + KE+ +C  ++  G H
Sbjct: 69  GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPH 107

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 19  ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78
           E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC        + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIH 105
           +F      E + KE+ +C  ++  G H
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPH 87

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 20  RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL 79
           R ++L+GRTG GKSATGNSILG+R F +  G++ VT  C   +    D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80  FDLSAGSEFVG-KEIVKCLGMAKDGIHA 106
           F         G +E   C  ++  G HA
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHA 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	3e-30
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	4e-29
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	5e-29
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-28
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	1e-25
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-06
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	2e-05
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	1e-04

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  107 bits (268), Expect = 3e-30
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 3   ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT 62
           E++I+   K         TV++LG+ G GKS+T NS++G +  + S           M +
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVS 78

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
             +  G  +N+IDTPGL +    +    + I   L      +  
Sbjct: 79  RTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL 121

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  103 bits (259), Expect = 4e-29
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 14  SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNV 73
            P N +  +VL+G+TG GKSATGNSILGR+ F +   +  +T  CE +++       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           +DTPG+FD    +    KEI++C+ +   G HA
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 115

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  104 bits (260), Expect = 5e-29
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 3   ERVIDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT 62
            ++++             T++++G+ G GKS+T NSI+G R    S   S       +  
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           +    G  +N+IDTPGL +    ++     I   L      I  
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDV 122

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  102 bits (255), Expect = 2e-28
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 11  KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV 70
           K    S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC          + 
Sbjct: 14  KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72

Query: 71  VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHA 106
           + +IDTP +F      E + KE+ +C  ++  G H 
Sbjct: 73  IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHV 108

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTTVLKDGQVVNV 73
             +    V + G TG+GKS+  N++ G     + +A +  V  T E       +   V  
Sbjct: 65  IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124

Query: 74  IDTPGL 79
            D PG+
Sbjct: 125 WDLPGI 130

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 21  TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQV---VNVIDTP 77
            ++ +G TG GKS   +++   +     A  +      +  T  L++  V   + ++ T 
Sbjct: 44  NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103

Query: 78  GLFD 81
           G  D
Sbjct: 104 GFGD 107

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG 68
             G   +++LG    GKS   N+++G     +        T      TVL+ G
Sbjct: 66  QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDV---NPCTAV---LTVLRYG 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.61
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.6
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.6
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.59
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.58
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.58
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.58
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.57
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.57
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.57
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.57
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.56
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.56
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.56
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.56
1g6h_A	257	High-affinity branched-chain amino acid transport	99.55
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.55
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.55
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.54
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.54
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.54
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.53
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.53
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.53
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.53
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.52
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.52
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.5
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.5
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.49
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.49
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.49
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.48
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.48
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.44
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.44
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.42
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.42
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.4
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.4
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.39
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.39
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.39
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.36
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.34
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.33
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.33
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.32
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.32
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.29
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.27
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.25
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.24
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.24
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.19
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.17
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.12
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.12
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.11
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.11
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.1
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.1
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.1
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.09
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.09
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.08
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.08
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.08
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.07
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.07
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.06
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.06
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.04
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.04
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.03
2og2_A	359	Putative signal recognition particle receptor; nuc	99.01
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.0
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.0
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.0
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.0
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.99
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.99
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.99
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.98
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.98
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.97
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.97
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.97
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.97
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.97
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.96
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.94
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.93
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.93
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.92
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.92
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.92
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.9
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.9
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.9
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.9
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.9
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.9
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.89
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.88
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.88
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.84
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.84
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.84
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.83
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.83
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.83
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.83
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.82
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.82
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.82
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.82
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.82
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.81
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.8
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.78
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.78
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.77
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.77
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.76
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.76
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.75
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.75
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.75
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.75
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.74
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.73
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.73
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.73
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.73
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.73
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.73
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.72
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.72
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.72
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.72
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.71
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.71
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.71
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.71
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.7
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.7
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.7
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.69
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.68
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.68
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.68
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.68
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.67
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.67
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.67
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.67
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.67
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.67
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.66
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.66
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.66
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.66
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.66
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.65
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.65
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.65
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.65
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.64
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.64
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.64
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.64
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.63
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.63
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.63
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.63
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.63
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.63
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.63
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.62
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.62
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.62
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.62
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.62
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.62
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.61
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.61
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.61
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.6
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.6
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.6
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.6
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.6
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.59
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.59
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.59
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.59
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.59
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.59
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.59
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.59
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.58
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.58
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.57
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.57
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.57
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.57
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.57
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.57
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.56
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.56
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.56
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.56
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.55
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.54
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.54
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.54
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.54
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.54
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.53
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.53
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.53
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.53
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.52
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.52
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.51
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.51
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.51
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.51
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.5
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.5
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.49
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.49
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.48
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.48
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.48
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.47
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.47
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.46
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.45
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.45
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.45
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.45
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.45
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.45
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.44
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.44
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.43
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.43
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.42
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.42
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.42
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.42
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.42
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.42
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.42
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.41
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.4
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.4
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.4
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.39
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.38
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.38
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.38
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.37
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.36
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.36
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.36
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.35
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.35
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.35
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.35
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.34
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.34
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.34
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.34
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.34
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.33
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.33
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.33
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.32
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.32
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.32
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.31
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.31
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.31
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.31
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.3
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.3
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.3
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.3
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.29
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.29
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.28
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.28
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.27
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.26
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.26
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.26
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.25
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.24
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.24
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.24
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.23
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.23
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.23
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.23
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.22
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.21
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.2
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.18
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.18
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.18
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.18
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.17
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.17
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.17
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.16
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.15
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.15
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.15
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.14
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.13
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.11
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.11
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.11
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.11
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.1
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.1
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.09
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.09
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.09
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.07
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.07
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.07
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.06
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.06
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.06
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.05
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.05
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.04
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.04
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.3
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.04
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.04
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.04
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.03
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.03
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.03
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.03
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.02
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.02
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.01
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.01
1via_A	175	Shikimate kinase; structural genomics, transferase	98.01
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.0
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.0
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.99
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.98
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.98
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.98
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.98
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.98
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.97
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.97
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.97
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.97
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.96
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.95
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.94
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.93
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.93
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.93
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.93
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.92
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.91
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.9
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.9
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.88
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.88
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.87
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.86
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.86
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.85
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.85
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.84
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.84
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.83
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.82
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.82
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.82
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.79
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.79
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.79
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.78
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.78
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.77
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.77
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.76
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.75
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.75
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.75
3ice_A	422	Transcription termination factor RHO; transcriptio	97.74
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.74
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.74
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.74
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.73
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.73
3bos_A	242	Putative DNA replication factor; P-loop containing	97.73
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.73
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.72
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.72
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.72
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.71
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.7
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.69
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.69
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.68
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.68
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.68
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.67
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.67
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.65
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.64
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.64
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.63
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.63
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.62
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.62
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.62
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.61
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.61
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.6
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.6
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.58
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.58
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.57
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.56
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.55
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.55
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.54
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.53
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.51
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.51
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.5
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.49
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.49
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.49
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.49
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.48
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.48
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.46
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.46
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.45
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.45
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.44
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.44
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.42
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.4
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.38

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.61  E-value=4e-16  Score=105.28  Aligned_cols=81  Identities=11%  Similarity=0.080  Sum_probs=59.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+...+...... ......++.+++++|.+.+++.     +++.
T Consensus        24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~-----ltV~   98 (359)
T 3fvq_A           24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH-----LTVY   98 (359)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT-----SCHH
T ss_pred             EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCC-----CCHH
Confidence            344567899999999999999999999999999998655444332110 1111124679999999999877     6777


Q ss_pred             HHHHHhh
Q 038901           92 EIVKCLG   98 (107)
Q Consensus        92 ~~~~~~~   98 (107)
                      +++.+..
T Consensus        99 eni~~~l  105 (359)
T 3fvq_A           99 RNIAYGL  105 (359)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
Confidence            7776643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.60  E-value=1.2e-16  Score=102.69  Aligned_cols=79  Identities=16%  Similarity=0.090  Sum_probs=55.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+..........+.+..+++++|.+.+++.     .++.++
T Consensus        27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----ltv~en  101 (240)
T 1ji0_A           27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE-----LTVYEN  101 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT-----SBHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC-----CcHHHH
Confidence            344578999999999999999999999999999885543332211111001112458999999988776     677777


Q ss_pred             HHHh
Q 038901           94 VKCL   97 (107)
Q Consensus        94 ~~~~   97 (107)
                      +.+.
T Consensus       102 l~~~  105 (240)
T 1ji0_A          102 LMMG  105 (240)
T ss_dssp             HHGG
T ss_pred             HHHh
Confidence            7654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.60  E-value=4.1e-16  Score=105.87  Aligned_cols=77  Identities=18%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+...+.......   ..++.+++++|.+.+++.     +++.+
T Consensus        23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~---~~~r~ig~VfQ~~~l~p~-----ltV~e   94 (381)
T 3rlf_A           23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP---PAERGVGMVFQSYALYPH-----LSVAE   94 (381)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGGSCEEEECTTCCCCTT-----SCHHH
T ss_pred             EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC---HHHCCEEEEecCCcCCCC-----CCHHH
Confidence            3445678999999999999999999999999999886544333221111   123569999999999887     67777


Q ss_pred             HHHHh
Q 038901           93 IVKCL   97 (107)
Q Consensus        93 ~~~~~   97 (107)
                      ++.+.
T Consensus        95 ni~~~   99 (381)
T 3rlf_A           95 NMSFG   99 (381)
T ss_dssp             HHTHH
T ss_pred             HHHHH
Confidence            76554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.59  E-value=1.2e-16  Score=102.53  Aligned_cols=79  Identities=18%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE---eeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+...+..........   ..+..+++++|.|.+++.     .+
T Consensus        25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~-----~t   99 (235)
T 3tif_A           25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL-----LT   99 (235)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT-----SC
T ss_pred             eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC-----Cc
Confidence            3455678999999999999999999999999999885443332211111000   012358999999988876     56


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      +.+++.+
T Consensus       100 v~enl~~  106 (235)
T 3tif_A          100 ALENVEL  106 (235)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.58  E-value=9e-16  Score=103.62  Aligned_cols=78  Identities=18%  Similarity=0.057  Sum_probs=58.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+...........   ..++.+++++|.+.+++.     +++.+
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~e   94 (359)
T 2yyz_A           23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP---PKYREVGMVFQNYALYPH-----MTVFE   94 (359)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGGTTEEEECSSCCCCTT-----SCHHH
T ss_pred             EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC---hhhCcEEEEecCcccCCC-----CCHHH
Confidence            3445678999999999999999999999999999886544332221111   124679999999998876     67777


Q ss_pred             HHHHhh
Q 038901           93 IVKCLG   98 (107)
Q Consensus        93 ~~~~~~   98 (107)
                      ++.+..
T Consensus        95 ni~~~~  100 (359)
T 2yyz_A           95 NIAFPL  100 (359)
T ss_dssp             HHHGGG
T ss_pred             HHHHHH
Confidence            777643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.58  E-value=4.5e-16  Score=105.16  Aligned_cols=82  Identities=10%  Similarity=-0.050  Sum_probs=58.2

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCchH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      .......+|++++|+||||||||||+++|+|+..+++|.+...+..........  ..++.+++++|.+.+++.     .
T Consensus        46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~-----~  120 (366)
T 3tui_C           46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS-----R  120 (366)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT-----S
T ss_pred             eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC-----C
Confidence            344556788999999999999999999999999999886544333221111100  013579999999998876     5


Q ss_pred             HHHHHHHHh
Q 038901           89 VGKEIVKCL   97 (107)
Q Consensus        89 ~~~~~~~~~   97 (107)
                      ++.+++.+.
T Consensus       121 TV~env~~~  129 (366)
T 3tui_C          121 TVFGNVALP  129 (366)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            666666554

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.58  E-value=1.7e-15  Score=102.76  Aligned_cols=79  Identities=18%  Similarity=0.163  Sum_probs=57.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-e--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-T--TVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      ....+|++++|+||||||||||+++|+|+..+++|.+........... .  ....++.+++++|.+.+++.     +++
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~-----ltv   98 (372)
T 1g29_1           24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH-----MTV   98 (372)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT-----SCH
T ss_pred             EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCC-----CCH
Confidence            344578999999999999999999999999999986554443322100 0  11124679999999998876     677


Q ss_pred             HHHHHHh
Q 038901           91 KEIVKCL   97 (107)
Q Consensus        91 ~~~~~~~   97 (107)
                      .+++.+.
T Consensus        99 ~eni~~~  105 (372)
T 1g29_1           99 YDNIAFP  105 (372)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.57  E-value=4e-16  Score=101.16  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=54.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..+++|.+......... ....+ ++.+++++|.|.+++.     .++.++
T Consensus        36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~-~~~i~~v~q~~~l~~~-----ltv~en  108 (256)
T 1vpl_A           36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEV-RKLISYLPEEAGAYRN-----MQGIEY  108 (256)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHH-HTTEEEECTTCCCCTT-----SBHHHH
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHH-hhcEEEEcCCCCCCCC-----CcHHHH
Confidence            3456789999999999999999999999999998854433221111 00111 3568999999988765     566666


Q ss_pred             HHHh
Q 038901           94 VKCL   97 (107)
Q Consensus        94 ~~~~   97 (107)
                      +.+.
T Consensus       109 l~~~  112 (256)
T 1vpl_A          109 LRFV  112 (256)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.57  E-value=9.3e-16  Score=97.14  Aligned_cols=73  Identities=11%  Similarity=-0.010  Sum_probs=54.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+........     . .+..+++++|.|.++..     .++.++
T Consensus        30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~-~~~~i~~v~q~~~~~~~-----~tv~en   98 (214)
T 1sgw_A           30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----K-VKGKIFFLPEEIIVPRK-----ISVEDY   98 (214)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----G-GGGGEEEECSSCCCCTT-----SBHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----h-hcCcEEEEeCCCcCCCC-----CCHHHH
Confidence            344578999999999999999999999999998885443332111     1 24678999999988765     566776


Q ss_pred             HHHh
Q 038901           94 VKCL   97 (107)
Q Consensus        94 ~~~~   97 (107)
                      +.+.
T Consensus        99 l~~~  102 (214)
T 1sgw_A           99 LKAV  102 (214)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.57  E-value=1e-15  Score=103.47  Aligned_cols=77  Identities=19%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+...........   ..++.+++++|.+.+++.     +++.+
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~e   94 (362)
T 2it1_A           23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP---PKDRNVGLVFQNWALYPH-----MTVYK   94 (362)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGGTTEEEECTTCCCCTT-----SCHHH
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC---HhHCcEEEEecCcccCCC-----CCHHH
Confidence            3445678999999999999999999999999999886544332221111   123678999999998876     66777


Q ss_pred             HHHHh
Q 038901           93 IVKCL   97 (107)
Q Consensus        93 ~~~~~   97 (107)
                      ++.+.
T Consensus        95 ni~~~   99 (362)
T 2it1_A           95 NIAFP   99 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.57  E-value=1.2e-15  Score=102.90  Aligned_cols=81  Identities=15%  Similarity=0.046  Sum_probs=58.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+............  ....++.+++++|.+.+++.     +++
T Consensus        25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~-----ltv   99 (353)
T 1oxx_K           25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN-----LTA   99 (353)
T ss_dssp             EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT-----SCH
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC-----CCH
Confidence            34456789999999999999999999999999998865444333221000  11124578999999998876     677


Q ss_pred             HHHHHHhh
Q 038901           91 KEIVKCLG   98 (107)
Q Consensus        91 ~~~~~~~~   98 (107)
                      .+++.+..
T Consensus       100 ~eni~~~~  107 (353)
T 1oxx_K          100 FENIAFPL  107 (353)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHHH
Confidence            77776643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.56  E-value=4.2e-16  Score=101.53  Aligned_cols=78  Identities=14%  Similarity=0.038  Sum_probs=54.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+..........+ .+..++++|.+.++..     .++.++
T Consensus        32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~-----~tv~e~  105 (266)
T 4g1u_C           32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL-ARTRAVMRQYSELAFP-----FSVSEV  105 (266)
T ss_dssp             EEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH-HHHEEEECSCCCCCSC-----CBHHHH
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH-hheEEEEecCCccCCC-----CCHHHH
Confidence            3455789999999999999999999999999998855433322111111111 2457899999887655     566666


Q ss_pred             HHHh
Q 038901           94 VKCL   97 (107)
Q Consensus        94 ~~~~   97 (107)
                      +.+.
T Consensus       106 l~~~  109 (266)
T 4g1u_C          106 IQMG  109 (266)
T ss_dssp             HHGG
T ss_pred             HHhh
Confidence            6554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.56  E-value=1e-15  Score=103.22  Aligned_cols=76  Identities=20%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..+++|.+..........   ...++.+++++|.+.+++.     +++.++
T Consensus        36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---~~~~r~ig~v~Q~~~l~~~-----ltv~en  107 (355)
T 1z47_A           36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL---PPQKRNVGLVFQNYALFQH-----MTVYDN  107 (355)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC---CGGGSSEEEECGGGCCCTT-----SCHHHH
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC---ChhhCcEEEEecCcccCCC-----CCHHHH
Confidence            34557899999999999999999999999999988654333221111   1124678999999998876     667777


Q ss_pred             HHHh
Q 038901           94 VKCL   97 (107)
Q Consensus        94 ~~~~   97 (107)
                      +.+.
T Consensus       108 i~~~  111 (355)
T 1z47_A          108 VSFG  111 (355)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.56  E-value=1.1e-15  Score=103.61  Aligned_cols=77  Identities=19%  Similarity=0.153  Sum_probs=50.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+...........   ..++.+++++|.+.+++.     +++.+
T Consensus        31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~e  102 (372)
T 1v43_A           31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP---PKDRNISMVFQSYAVWPH-----MTVYE  102 (372)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGGGTEEEEEC------C-----CCHHH
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC---hhhCcEEEEecCcccCCC-----CCHHH
Confidence            3445678999999999999999999999999999886543332211111   113568999999988876     56666


Q ss_pred             HHHHh
Q 038901           93 IVKCL   97 (107)
Q Consensus        93 ~~~~~   97 (107)
                      ++.+.
T Consensus       103 ni~~~  107 (372)
T 1v43_A          103 NIAFP  107 (372)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            66553

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.56  E-value=4.6e-16  Score=101.21  Aligned_cols=78  Identities=15%  Similarity=0.043  Sum_probs=53.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe-eeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC-EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+.... ........++.+++++|.+.+++.     .++.+
T Consensus        45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~-----~tv~e  119 (263)
T 2olj_A           45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH-----MTVLN  119 (263)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT-----SCHHH
T ss_pred             EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC-----CCHHH
Confidence            345678999999999999999999999999999885543332211 000000012458999999988765     56666


Q ss_pred             HHHH
Q 038901           93 IVKC   96 (107)
Q Consensus        93 ~~~~   96 (107)
                      ++.+
T Consensus       120 ~l~~  123 (263)
T 2olj_A          120 NITL  123 (263)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.55  E-value=1.5e-16  Score=103.11  Aligned_cols=81  Identities=17%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+||||||||||+++|+|+..++.|.+...+............+..+++++|.+.+++.     .++.
T Consensus        26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~tv~  100 (257)
T 1g6h_A           26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE-----MTVL  100 (257)
T ss_dssp             ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG-----SBHH
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC-----CcHH
Confidence            34455678999999999999999999999999999885543332211100000012358899999877654     5677


Q ss_pred             HHHHHh
Q 038901           92 EIVKCL   97 (107)
Q Consensus        92 ~~~~~~   97 (107)
                      +++.+.
T Consensus       101 enl~~~  106 (257)
T 1g6h_A          101 ENLLIG  106 (257)
T ss_dssp             HHHHGG
T ss_pred             HHHHHH
Confidence            776654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.55  E-value=5.2e-16  Score=98.85  Aligned_cols=78  Identities=15%  Similarity=0.011  Sum_probs=52.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCCCCCCCCCchHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~~~~~~~~~~~~~   90 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+.............   .+.+..+++++|.+.+++.     .++
T Consensus        25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~-----~tv   99 (224)
T 2pcj_A           25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE-----LTA   99 (224)
T ss_dssp             EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT-----SCH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC-----CCH
Confidence            34457899999999999999999999999999888544333221110000   0001458999999988765     455


Q ss_pred             HHHHHH
Q 038901           91 KEIVKC   96 (107)
Q Consensus        91 ~~~~~~   96 (107)
                      .+++.+
T Consensus       100 ~e~l~~  105 (224)
T 2pcj_A          100 LENVIV  105 (224)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555544

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.55  E-value=4.9e-15  Score=95.88  Aligned_cols=65  Identities=18%  Similarity=0.028  Sum_probs=51.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..+++|.+.             + ++.+++++|.|.++..     .++.++
T Consensus        26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~-~~~i~~v~q~~~~~~~-----~tv~en   86 (253)
T 2nq2_C           26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------V-YQSIGFVPQFFSSPFA-----YSVLDI   86 (253)
T ss_dssp             EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------E-CSCEEEECSCCCCSSC-----CBHHHH
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------E-eccEEEEcCCCccCCC-----CCHHHH
Confidence            34457899999999999999999999999998877432             2 4578899999988755     566777


Q ss_pred             HHHh
Q 038901           94 VKCL   97 (107)
Q Consensus        94 ~~~~   97 (107)
                      +.+.
T Consensus        87 l~~~   90 (253)
T 2nq2_C           87 VLMG   90 (253)
T ss_dssp             HHGG
T ss_pred             HHHh
Confidence            6654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.54  E-value=9.2e-16  Score=98.72  Aligned_cols=67  Identities=12%  Similarity=0.029  Sum_probs=48.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+.......... .++.+++++|.|.+++
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~l~~   89 (243)
T 1mv5_A           23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN-WRSQIGFVSQDSAIMA   89 (243)
T ss_dssp             EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSC-CTTTCCEECCSSCCCC
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHH-HHhhEEEEcCCCcccc
Confidence            445678999999999999999999999999999886544332211111111 2456889999987764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.54  E-value=6.6e-16  Score=99.80  Aligned_cols=75  Identities=13%  Similarity=-0.041  Sum_probs=52.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~   94 (107)
                      ...+|++++|+||||||||||+++|+|+..++ |.+...+..........+ ++.+++++|.+.++..     .++.+++
T Consensus        22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~-----~tv~e~l   94 (249)
T 2qi9_C           22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKL-ALHRAYLSQQQTPPFA-----TPVWHYL   94 (249)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHH-HHHEEEECSCCCCCTT-----CBHHHHH
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHH-hceEEEECCCCccCCC-----CcHHHHH
Confidence            44578999999999999999999999999998 854433322111010011 3468999999987765     5666666


Q ss_pred             HH
Q 038901           95 KC   96 (107)
Q Consensus        95 ~~   96 (107)
                      .+
T Consensus        95 ~~   96 (249)
T 2qi9_C           95 TL   96 (249)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.54  E-value=7.5e-16  Score=103.64  Aligned_cols=76  Identities=17%  Similarity=0.110  Sum_probs=56.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...........   ..++.+++++|.+.+++.     +++.++
T Consensus        21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~en   92 (348)
T 3d31_A           21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS---PEKHDIAFVYQNYSLFPH-----MNVKKN   92 (348)
T ss_dssp             EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC---HHHHTCEEECTTCCCCTT-----SCHHHH
T ss_pred             EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc---hhhCcEEEEecCcccCCC-----CCHHHH
Confidence            345678999999999999999999999999999886543332211111   113468999999998877     677777


Q ss_pred             HHHh
Q 038901           94 VKCL   97 (107)
Q Consensus        94 ~~~~   97 (107)
                      +.+.
T Consensus        93 l~~~   96 (348)
T 3d31_A           93 LEFG   96 (348)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.53  E-value=8.3e-16  Score=99.95  Aligned_cols=79  Identities=15%  Similarity=0.042  Sum_probs=55.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee----------eee--EEeeCCcEEEEEeCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE----------MKT--TVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~----------~~~--~~~~~~~~~~v~d~p~~~   80 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+...+.....          ...  ....++.+++++|.+.++
T Consensus        26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~  105 (262)
T 1b0u_A           26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW  105 (262)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccC
Confidence            34456789999999999999999999999999998865433322110          000  000124689999999887


Q ss_pred             CCCCCchHHHHHHHHH
Q 038901           81 DLSAGSEFVGKEIVKC   96 (107)
Q Consensus        81 ~~~~~~~~~~~~~~~~   96 (107)
                      +.     .++.+++.+
T Consensus       106 ~~-----ltv~e~l~~  116 (262)
T 1b0u_A          106 SH-----MTVLENVME  116 (262)
T ss_dssp             TT-----SCHHHHHHH
T ss_pred             CC-----CcHHHHHHh
Confidence            66     567777665

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.53  E-value=1e-15  Score=99.96  Aligned_cols=67  Identities=18%  Similarity=0.122  Sum_probs=48.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+.......... .++.+++++|.|.+++
T Consensus        40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~-~~~~i~~v~Q~~~l~~  106 (271)
T 2ixe_A           40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY-LHTQVAAVGQEPLLFG  106 (271)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH-HHHHEEEECSSCCCCS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHH-HhccEEEEecCCcccc
Confidence            455678999999999999999999999999999886543332211111111 1346899999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.53  E-value=7.4e-14  Score=89.17  Aligned_cols=88  Identities=40%  Similarity=0.738  Sum_probs=55.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHH
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~   96 (107)
                      ....+|+|+|++|+|||||+|.|++......+......+.........+ ....+.++||||+.+.........+++..+
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999999877655432223333333333343 567889999999987655555556677777


Q ss_pred             hhccCCCCC
Q 038901           97 LGMAKDGIH  105 (107)
Q Consensus        97 ~~~~~~~~~  105 (107)
                      +...+++++
T Consensus       106 ~~~~~~~~~  114 (239)
T 3lxx_A          106 ILLTSPGPH  114 (239)
T ss_dssp             HHHTTTCCS
T ss_pred             HHhcCCCCc
Confidence            766665554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.53  E-value=5.6e-16  Score=102.72  Aligned_cols=75  Identities=13%  Similarity=0.110  Sum_probs=53.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~   94 (107)
                      ...+|++++|+||||||||||+++|+|++.+..|.+...+.......... .++.+++++|.|.++.      .++.+++
T Consensus        76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~-~r~~i~~v~Q~~~lf~------~Tv~eNi  148 (306)
T 3nh6_A           76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQAS-LRSHIGVVPQDTVLFN------DTIADNI  148 (306)
T ss_dssp             EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHH-HHHTEEEECSSCCCCS------EEHHHHH
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHH-HhcceEEEecCCccCc------ccHHHHH
Confidence            45678999999999999999999999999999886544333222211111 1456999999998874      3555555


Q ss_pred             HH
Q 038901           95 KC   96 (107)
Q Consensus        95 ~~   96 (107)
                      .+
T Consensus       149 ~~  150 (306)
T 3nh6_A          149 RY  150 (306)
T ss_dssp             HT
T ss_pred             Hh
Confidence            44

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.52  E-value=1.7e-15  Score=97.38  Aligned_cols=74  Identities=19%  Similarity=0.054  Sum_probs=51.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+ ++++|+||||||||||+++|+|+..++.|.+...+......   ...++.+++++|.+.+++.     .++.++
T Consensus        20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~i~~v~q~~~l~~~-----ltv~en   90 (240)
T 2onk_A           20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL---PPERRGIGFVPQDYALFPH-----LSVYRN   90 (240)
T ss_dssp             EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---CTTTSCCBCCCSSCCCCTT-----SCHHHH
T ss_pred             EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC---chhhCcEEEEcCCCccCCC-----CcHHHH
Confidence            34456 89999999999999999999999999988554333221110   1113567899999888765     455555


Q ss_pred             HHH
Q 038901           94 VKC   96 (107)
Q Consensus        94 ~~~   96 (107)
                      +.+
T Consensus        91 l~~   93 (240)
T 2onk_A           91 IAY   93 (240)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.52  E-value=9.7e-16  Score=98.87  Aligned_cols=67  Identities=18%  Similarity=0.103  Sum_probs=47.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+..........+ ++.+++++|.|.+++
T Consensus        30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~l~~   96 (247)
T 2ff7_A           30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL-RRQVGVVLQDNVLLN   96 (247)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH-HHHEEEECSSCCCTT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH-HhcEEEEeCCCcccc
Confidence            3445789999999999999999999999999988854433322111010011 346899999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.50  E-value=1.9e-15  Score=98.88  Aligned_cols=64  Identities=14%  Similarity=0.024  Sum_probs=45.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe--eeeeEEeeCCcEEEEEeCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC--EMKTTVLKDGQVVNVIDTPG   78 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~v~d~p~   78 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+....  ...... .++.+++++|.|.
T Consensus        29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~-~~~~ig~v~Q~~~   94 (275)
T 3gfo_A           29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK-LRESIGIVFQDPD   94 (275)
T ss_dssp             EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHH-HHHSEEEECSSGG
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHH-HhCcEEEEEcCcc
Confidence            345678999999999999999999999999999886543332211  000001 1356899999883

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.50  E-value=4.7e-15  Score=96.57  Aligned_cols=76  Identities=14%  Similarity=0.024  Sum_probs=53.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC-CCCCCCCCchHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFVGK   91 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p-~~~~~~~~~~~~~~   91 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+..........   .+ ++.+++++|.| .++..     .++.
T Consensus        27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~-~~~i~~v~q~~~~~~~~-----~tv~   97 (266)
T 2yz2_A           27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EI-RRNIGIAFQYPEDQFFA-----ERVF   97 (266)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HH-GGGEEEECSSGGGGCCC-----SSHH
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hh-hhhEEEEeccchhhcCC-----CcHH
Confidence            345567899999999999999999999999999988554333221111   12 45689999986 33333     4666


Q ss_pred             HHHHHh
Q 038901           92 EIVKCL   97 (107)
Q Consensus        92 ~~~~~~   97 (107)
                      +++.+.
T Consensus        98 enl~~~  103 (266)
T 2yz2_A           98 DEVAFA  103 (266)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            766654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.50  E-value=1.6e-14  Score=92.22  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=43.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+||||||||||+++|+|+..+..|.+.             + ...++|++|.|.+++
T Consensus        29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-------------~-~g~i~~v~q~~~~~~   82 (229)
T 2pze_A           29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-------------H-SGRISFCSQFSWIMP   82 (229)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-------------E-CSCEEEECSSCCCCS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE-------------E-CCEEEEEecCCcccC
Confidence            34457899999999999999999999999998877421             1 235789999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.49  E-value=1.3e-15  Score=98.46  Aligned_cols=77  Identities=13%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC--ccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGR--RAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ....+|++++|+||||||||||+++|+|+  ..++.|.+...+............+...++++|.|.+++.     .++.
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-----~tv~   98 (250)
T 2d2e_A           24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG-----VTIA   98 (250)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS-----CBHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC-----CCHH
Confidence            34557899999999999999999999998  6777775443332211100000112336788899888765     4455


Q ss_pred             HHHH
Q 038901           92 EIVK   95 (107)
Q Consensus        92 ~~~~   95 (107)
                      +++.
T Consensus        99 e~l~  102 (250)
T 2d2e_A           99 NFLR  102 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.49  E-value=3.1e-15  Score=97.50  Aligned_cols=69  Identities=12%  Similarity=0.108  Sum_probs=45.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc--cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRR--AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....+|++++|+||||||||||+++|+|+.  .++.|.+...+............+..+++++|.|.+++.
T Consensus        41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~  111 (267)
T 2zu0_C           41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG  111 (267)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence            345678999999999999999999999984  567775433322111100000001237899999987765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.49  E-value=1.5e-14  Score=92.75  Aligned_cols=63  Identities=17%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+.             + ...+++++|.|.++ .     .++.++
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~-~g~i~~v~Q~~~~~-~-----~tv~en   85 (237)
T 2cbz_A           26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-------------I-KGSVAYVPQQAWIQ-N-----DSLREN   85 (237)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE-------------E-CSCEEEECSSCCCC-S-----EEHHHH
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-------------E-CCEEEEEcCCCcCC-C-----cCHHHH
Confidence            34567899999999999999999999999988877422             1 23578888888654 2     345555


Q ss_pred             HHH
Q 038901           94 VKC   96 (107)
Q Consensus        94 ~~~   96 (107)
                      +.+
T Consensus        86 l~~   88 (237)
T 2cbz_A           86 ILF   88 (237)
T ss_dssp             HHT
T ss_pred             hhC
Confidence            443

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.48  E-value=5.6e-15  Score=95.93  Aligned_cols=66  Identities=18%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+||||||||||+++|+|+..+ .|.+.............. .++.+++++|.|.+++
T Consensus        41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~-~~~~i~~v~Q~~~l~~  106 (260)
T 2ghi_A           41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNS-IRSIIGIVPQDTILFN  106 (260)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHH-HHTTEEEECSSCCCCS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHH-HhccEEEEcCCCcccc
Confidence            44567899999999999999999999999876 564433222111111111 1356899999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.48  E-value=2.6e-15  Score=98.45  Aligned_cols=65  Identities=11%  Similarity=-0.039  Sum_probs=45.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEe--eeeeEEeeCCcEEEEEeCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTC--EMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ....+|++++|+||||||||||+++|+|+..++.|.+...+....  ......+ ++.+++++|.+.+
T Consensus        42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~~~i~~v~Q~~~~  108 (279)
T 2ihy_A           42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV-RQHIGFVSHSLLE  108 (279)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH-HTTEEEECHHHHT
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH-cCcEEEEEcCccc
Confidence            344578999999999999999999999999999885443332211  1010111 3568899998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.44  E-value=9.1e-14  Score=91.53  Aligned_cols=53  Identities=15%  Similarity=0.180  Sum_probs=43.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ...+|++++|+||||||||||+++|+|+..++.|.+..              ...++|++|.|.+++
T Consensus        60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------------~g~i~~v~Q~~~l~~  112 (290)
T 2bbs_A           60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH--------------SGRISFCSQNSWIMP  112 (290)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEEC--------------CSCEEEECSSCCCCS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE--------------CCEEEEEeCCCccCc
Confidence            34578999999999999999999999999988774321              235788999887765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.44  E-value=3.6e-14  Score=100.88  Aligned_cols=69  Identities=22%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....++|++++|+||||||||||+++|+|+..++.|.+..++.......... .++.+++++|.|.+++
T Consensus       362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~Q~~~l~~  430 (582)
T 3b5x_A          362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTN-LRRHFALVSQNVHLFN  430 (582)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHH-HhcCeEEEcCCCcccc
Confidence            34455678999999999999999999999999999886554443322111111 2457899999998875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.42  E-value=3.6e-14  Score=92.32  Aligned_cols=71  Identities=17%  Similarity=0.071  Sum_probs=49.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEE-EEEeCCCCCCCCCCchHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVV-NVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .... |++++|+||||||||||+++|+|+. ++.|.+..........   .. ++.++ +++|.|.+  .     .++.+
T Consensus        26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~~-~~~i~~~v~Q~~~l--~-----~tv~e   92 (263)
T 2pjz_A           26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---RN-YIRYSTNLPEAYEI--G-----VTVND   92 (263)
T ss_dssp             EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---SC-CTTEEECCGGGSCT--T-----SBHHH
T ss_pred             EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---HH-hhheEEEeCCCCcc--C-----CcHHH
Confidence            3445 7999999999999999999999999 9888544333221111   11 45688 99999887  3     45566


Q ss_pred             HHHHh
Q 038901           93 IVKCL   97 (107)
Q Consensus        93 ~~~~~   97 (107)
                      ++.+.
T Consensus        93 nl~~~   97 (263)
T 2pjz_A           93 IVYLY   97 (263)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.40  E-value=2.3e-14  Score=97.69  Aligned_cols=66  Identities=18%  Similarity=0.084  Sum_probs=46.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+|++++|+||||||||||+++|+|+.. +.|.+..............+ ++.+++++|.+.+++
T Consensus        42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~-rr~ig~v~Q~~~lf~  107 (390)
T 3gd7_A           42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW-RKAFGVIPQKVFIFS  107 (390)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH-HHTEEEESCCCCCCS
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH-hCCEEEEcCCcccCc
Confidence            3556789999999999999999999999987 77754333322111111111 356899999998875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.40  E-value=3.7e-14  Score=100.80  Aligned_cols=75  Identities=23%  Similarity=0.178  Sum_probs=52.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~   94 (107)
                      ..++|++++|+||||||||||+++|+|+..++.|.+..++..........+ ++.+++++|.|.+++.      ++++++
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~-~~~i~~v~Q~~~l~~~------tv~eni  437 (582)
T 3b60_A          365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL-RNQVALVSQNVHLFND------TVANNI  437 (582)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH-HHTEEEECSSCCCCSS------BHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHH-HhhCeEEccCCcCCCC------CHHHHH
Confidence            445789999999999999999999999999998855433322111111111 3468999999988753      455555


Q ss_pred             HH
Q 038901           95 KC   96 (107)
Q Consensus        95 ~~   96 (107)
                      .+
T Consensus       438 ~~  439 (582)
T 3b60_A          438 AY  439 (582)
T ss_dssp             HT
T ss_pred             hc
Confidence            44

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.39  E-value=2.4e-14  Score=101.76  Aligned_cols=67  Identities=22%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++|++++|+||||||||||+++|+|+..++.|.+..++..........+ ++.+++++|.|.+++.
T Consensus       363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~-r~~i~~v~Q~~~l~~~  429 (578)
T 4a82_A          363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL-RNQIGLVQQDNILFSD  429 (578)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH-HHTEEEECSSCCCCSS
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH-hhheEEEeCCCccCcc
Confidence            446789999999999999999999999999998865443332221111111 3568999999998864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.39  E-value=3.4e-14  Score=101.27  Aligned_cols=76  Identities=20%  Similarity=0.155  Sum_probs=54.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHH
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~   93 (107)
                      ...++|++++|+||||||||||+++|+|+..++.|.+..++.......... .++.+++++|.|.+++.      +.+++
T Consensus       376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~------tv~en  448 (598)
T 3qf4_B          376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS-LRSSIGIVLQDTILFST------TVKEN  448 (598)
T ss_dssp             EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHH-HHHHEEEECTTCCCCSS------BHHHH
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHH-HHhceEEEeCCCccccc------cHHHH
Confidence            345678999999999999999999999999999886544333222211111 14579999999988753      55565


Q ss_pred             HHH
Q 038901           94 VKC   96 (107)
Q Consensus        94 ~~~   96 (107)
                      +.+
T Consensus       449 i~~  451 (598)
T 3qf4_B          449 LKY  451 (598)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.36  E-value=3.8e-14  Score=100.91  Aligned_cols=66  Identities=23%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..++|++++|+||||||||||+++|+|+..++.|.+..++.......... .++.+++++|.|.+++
T Consensus       365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~  430 (587)
T 3qf4_A          365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD-LRGHISAVPQETVLFS  430 (587)
T ss_dssp             EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHH-HHHHEEEECSSCCCCS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHH-HHhheEEECCCCcCcC
Confidence            44678999999999999999999999999999886544333322222111 2457999999998875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.34  E-value=1e-12  Score=86.83  Aligned_cols=63  Identities=27%  Similarity=0.241  Sum_probs=39.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC---ceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS---GVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+++++|+|+||||||||+|+|+|+..+..|.+..   .+........ ....+..++++|+|++..
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~-~~~~~~~g~v~q~p~~~~  233 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ-LLKFDFGGYVVDTPGFAN  233 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-EEECTTSCEEESSCSSTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE-EEEcCCCCEEEECcCCCc
Confidence            46899999999999999999999999998885543   1111111111 111245789999998753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.33  E-value=1.1e-11  Score=79.87  Aligned_cols=86  Identities=36%  Similarity=0.619  Sum_probs=53.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~   97 (107)
                      ....|+|+|++|+|||||+|.|++...+.........+.........+ ......++||||+.+.....+...+++..++
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            447899999999999999999998764443321111222222233333 5678899999999876544444444444444


Q ss_pred             hccCCCC
Q 038901           98 GMAKDGI  104 (107)
Q Consensus        98 ~~~~~~~  104 (107)
                      ...+.++
T Consensus       100 ~~~~~~~  106 (260)
T 2xtp_A          100 LLSAPGP  106 (260)
T ss_dssp             HHHTTCC
T ss_pred             HhcCCCC
Confidence            4333433

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.33  E-value=2.3e-12  Score=85.24  Aligned_cols=62  Identities=23%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC---ceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS---GVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+++++|+|+||+|||||+|+|+ ...+..|.+..   .+........ .......++++|+|++..
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~  228 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSK  228 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCc
Confidence            46899999999999999999999 98888886543   2211111111 111235789999999863

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.32  E-value=7.2e-13  Score=80.29  Aligned_cols=58  Identities=22%  Similarity=0.188  Sum_probs=40.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ..+|++++|+||||||||||+++|+|.. +..|.+...........  .. .+   +++|.+.++
T Consensus        30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~-~~---~~~q~~~l~   87 (158)
T 1htw_A           30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NI-AG---KMIYHFDLY   87 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EE-TT---EEEEEEECT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cC-CC---cceeccccc
Confidence            4678999999999999999999999999 77786554333221111  11 22   566766666

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.32  E-value=1.1e-13  Score=105.70  Aligned_cols=67  Identities=19%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++|+++||||+||||||||+++|+++..+..|.+..++..........+ ++++.+|+|+|.+++.
T Consensus      1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l-R~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A         1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT-RSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp             EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH-HTTEEEECSSCCCCSE
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH-HhheEEECCCCEeeCc
Confidence            446789999999999999999999999999999966555544433333233 6789999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.31  E-value=5e-12  Score=90.37  Aligned_cols=51  Identities=14%  Similarity=0.009  Sum_probs=42.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+|++++|+||||||||||+++|+|+..++.|.+..              ...++|++|.+.+..
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------------~~~i~~v~Q~~~~~~  430 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--------------DLTVAYKPQYIKAEY  430 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--------------CCCEEEECSSCCCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--------------eeEEEEEecCccCCC
Confidence            568999999999999999999999999999886542              235778888876643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.29  E-value=6.8e-12  Score=88.62  Aligned_cols=50  Identities=14%  Similarity=0.019  Sum_probs=41.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      .+|++++|+|+||||||||+++|+|+..+..|.+..              ...++|++|.+...
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--------------~~~i~~v~Q~~~~~  359 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--------------DLTVAYKPQYIKAD  359 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--------------CCCEEEECSSCCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--------------CceEEEEecCCcCC
Confidence            478999999999999999999999999999886542              23577888887654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.29  E-value=8.5e-13  Score=87.49  Aligned_cols=64  Identities=30%  Similarity=0.320  Sum_probs=36.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC----ceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----GVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..+|++++|+|+||+|||||+|+|+|...+..|.+..    +..+.........  . .++++|+|++...
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~--~-~g~v~dtpg~~~~  237 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT--S-GGLVADTPGFSSL  237 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE--T-TEEEESSCSCSSC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc--C-CEEEecCCCcccc
Confidence            3457999999999999999999999999888875442    1111111111111  2 6899999999764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.27  E-value=5.9e-13  Score=101.48  Aligned_cols=67  Identities=21%  Similarity=0.134  Sum_probs=50.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++|++++|+|+||||||||+++|+|+..++.|.+..++.......... .+..+++++|.|.+++.
T Consensus       412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~-~r~~i~~v~Q~~~l~~~  478 (1284)
T 3g5u_A          412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRY-LREIIGVVSQEPVLFAT  478 (1284)
T ss_dssp             EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHH-HHHHEEEECSSCCCCSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHH-HHhheEEEcCCCccCCc
Confidence            44678999999999999999999999999999886544433222212111 24569999999998864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.25  E-value=1.3e-12  Score=85.27  Aligned_cols=31  Identities=19%  Similarity=0.424  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .+++|+|+||||||||+|+|+|+..+..|.+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i   33 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASS   33 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            5799999999999999999999999888754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.24  E-value=6.5e-13  Score=101.46  Aligned_cols=67  Identities=22%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++|+.++|+|++|||||||+++|+|+..+..|.+..++........ .+.++.++++.|+|.+++.
T Consensus       440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~-~~lr~~i~~v~Q~~~Lf~~  506 (1321)
T 4f4c_A          440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL-EFLRKNVAVVSQEPALFNC  506 (1321)
T ss_dssp             EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHHEEEECSSCCCCSE
T ss_pred             eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH-HHHhhcccccCCcceeeCC
Confidence            446789999999999999999999999999999865544433222222 2224679999999999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.24  E-value=1.6e-12  Score=99.11  Aligned_cols=71  Identities=20%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .......+|++++|+|+||||||||+++|+|+..+..|.+..++.......... .+..+++++|.|.+++.
T Consensus      1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~l~~~ 1121 (1284)
T 3g5u_A         1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW-LRAQLGIVSQEPILFDC 1121 (1284)
T ss_dssp             SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHH-HTTSCEEEESSCCCCSS
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHH-HHhceEEECCCCccccc
Confidence            344556689999999999999999999999999999886554443322222112 25679999999987753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.19  E-value=2.6e-11  Score=85.63  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i  325 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSV  325 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5789999999999999999999999999998853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.17  E-value=5.2e-12  Score=79.57  Aligned_cols=56  Identities=16%  Similarity=0.089  Sum_probs=37.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      .+|++++|+||||||||||+++|+|+ .++.|.+..  .... ..... .+..+++++|.+
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~-~~~~ig~v~q~~   75 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVE-AGEKLGFLPGTL   75 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCC-TTCCCCSSCC--
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchh-hhcceEEecCCH
Confidence            45799999999999999999999999 998886631  1111 11111 134567777765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.17  E-value=2.1e-11  Score=86.13  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .+|++++|+||||||||||+|+|+|+..++.|.+
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            3789999999999999999999999999998854

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.14  E-value=9.9e-11  Score=80.36  Aligned_cols=62  Identities=26%  Similarity=0.267  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeee-eEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMK-TTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+++|+|+||||||||+|+|+|+..++.|.+........... ...........+.|+|++..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~  132 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS  132 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc
Confidence            399999999999999999999999998886544332211000 01111112467788888753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.12  E-value=4.7e-11  Score=85.39  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=32.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      ..+|++++|+||||||||||+++|+|+..++.|.+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            45789999999999999999999999999999865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.12  E-value=2.2e-11  Score=76.30  Aligned_cols=30  Identities=33%  Similarity=0.393  Sum_probs=25.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...+|++++|+||||||||||+++|+|+..
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            556789999999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.12  E-value=4.5e-11  Score=84.47  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ...+|++++|+|+||||||||+++|+|+..++.|.
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            45788999999999999999999999999998886

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.11  E-value=5.4e-12  Score=79.82  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ........+|++++|+||||||||||+++|+|+.
T Consensus        14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3445556678999999999999999999999987

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.11  E-value=3.8e-10  Score=76.65  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=50.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHhh
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~~   98 (107)
                      ..|+|||.+++|||||||+|++.....+.  ..+.|.........+ ....+.++|+||+............+++..++
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~--~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAE--YEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGG--TCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccC--CCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            57999999999999999999997643332  234555555455554 67788999999998653333334455554443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.10  E-value=3.9e-10  Score=73.23  Aligned_cols=62  Identities=29%  Similarity=0.421  Sum_probs=43.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      .+++|+|++|+|||||+|.|+|.....+..  .+.+.........+ ....+.++|+||++....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~   65 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQHVGNW--PGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTA   65 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCEEEEEC--TTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcccCCC--CCeEEEeeEEEEEE-CCceEEEEeCCCcccccc
Confidence            679999999999999999999986533221  22333333333343 566789999999987543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.10  E-value=4.6e-12  Score=83.84  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .....++++++|+|+||||||||++.|+++..+..|.
T Consensus        94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~  130 (302)
T 3b9q_A           94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK  130 (302)
T ss_dssp             CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence            3445678999999999999999999999998887764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.10  E-value=4.8e-10  Score=68.07  Aligned_cols=63  Identities=32%  Similarity=0.429  Sum_probs=39.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ++..++|+|++|+|||||+|.|++...+.... ..+.+.........+ ......++||||+...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~   65 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREA   65 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEEEE-CCeEEEEEECCCcccc
Confidence            46789999999999999999999875432111 111111111122333 4556789999998654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.09  E-value=5.9e-11  Score=80.14  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=28.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASAGS   51 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~   51 (107)
                      +|++++|+|+||+|||||+|+|+|... +..|.+.
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~  248 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS  248 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence            468999999999999999999999998 8777543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.09  E-value=6.8e-10  Score=71.81  Aligned_cols=77  Identities=30%  Similarity=0.396  Sum_probs=48.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~   96 (107)
                      +..+++|+|.+|+|||||+|.|++........ ....+.........+ ......++||||+.+.....+...+.+..+
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            34789999999999999999999876433221 112222222222333 567889999999976644444444444433

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.08  E-value=2.4e-11  Score=86.91  Aligned_cols=72  Identities=13%  Similarity=-0.015  Sum_probs=42.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHh
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~   97 (107)
                      .++|+|+||||||||+++|+|+..| .+|.+...+........  ....+..+++++|.+.+++.     .++.+++...
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~-----~tv~e~i~~~  121 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDA-----SEVEKEINKA  121 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCH-----HHHHTTHHHH
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCH-----HHHHHHHHHH
Confidence            3999999999999999999999877 67866554443211110  01113456788888888765     6676666554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.08  E-value=3.3e-10  Score=77.32  Aligned_cols=32  Identities=16%  Similarity=0.058  Sum_probs=26.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ......+.+++|+|+||+|||||+|+|++...
T Consensus        14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~   45 (392)
T 1ni3_A           14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVL   45 (392)
T ss_dssp             CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            33455679999999999999999999999543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.08  E-value=6.2e-11  Score=78.73  Aligned_cols=33  Identities=18%  Similarity=0.041  Sum_probs=29.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ..++++++|+|+||||||||+++|+++..+..|
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            567899999999999999999999999877544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.08  E-value=2.4e-10  Score=81.78  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=28.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      |++++|+|+||||||||+++|+|+..++.|.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            4789999999999999999999999999884

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.07  E-value=5.4e-11  Score=80.38  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .+|+.++|+|+||||||||+++|+++..+..|.+
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I  206 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI  206 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence            3678999999999999999999999999877743

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.07  E-value=9.4e-11  Score=83.87  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ...+|++++|+|+||||||||+++|+|+..++.|.
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            35788999999999999999999999999998886

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.06  E-value=9.6e-11  Score=72.78  Aligned_cols=53  Identities=19%  Similarity=0.039  Sum_probs=36.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDT   76 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~   76 (107)
                      |++++|+|+||||||||+++|+++.. ..| +.........   .....+..+++++.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~---~~~~~~~ig~~~~~   53 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE---VRQGGRRIGFDVVT   53 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE---EETTSSEEEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch---hHhhhceEEEEEEe
Confidence            46899999999999999999999988 777 4443322211   11124556677765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.06  E-value=2e-10  Score=71.43  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc-----cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRR-----AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+..++.+++|+|+||||||||+|.|+|..     .++.|....     .  ....+. . ...++|+||+..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~-----~--~~~~~~-~-~~~l~Dt~G~~~   84 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL-----I--NLFEVA-D-GKRLVDLPGYGY   84 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC-----E--EEEEEE-T-TEEEEECCCCC-
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee-----e--EEEEec-C-CEEEEECcCCcc
Confidence            556678999999999999999999999987     333332211     0  111221 2 456789999854

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.04  E-value=8.6e-11  Score=74.50  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=26.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      +-..++|+.++|+||||||||||+++|++..++
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            345678899999999999999999999998874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.04  E-value=1.2e-09  Score=65.76  Aligned_cols=60  Identities=27%  Similarity=0.467  Sum_probs=38.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++|+|++|+|||||+|.|++........  .+.+.........+ ......++||||....
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~   63 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSL   63 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccCC--CCcceeeeEEEEEE-CCcEEEEEECCCcccC
Confidence            679999999999999999999865432211  11111111122232 4567899999998765

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.03  E-value=1.6e-09  Score=70.08  Aligned_cols=61  Identities=21%  Similarity=0.374  Sum_probs=42.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ..++|+|.+|+|||||+|.|+|.....+..  .+.+.........+ ......++|+||.+...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~--pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~   62 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNW--PGVTVEKKTGEFLL-GEHLIEITDLPGVYSLV   62 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEEC--TTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCC--CCceEEEEEEEEEE-CCeEEEEEeCCCccccc
Confidence            468999999999999999999986433321  23333333333333 56688999999998764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.01  E-value=1.7e-11  Score=82.79  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .....++++++|+|+||||||||++.|+++..+..|.
T Consensus       151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~  187 (359)
T 2og2_A          151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK  187 (359)
T ss_dssp             CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCE
Confidence            3445678999999999999999999999998877664

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.00  E-value=1e-09  Score=75.62  Aligned_cols=29  Identities=21%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             CCCCceE--EEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERT--VVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~--i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+|.+  ++|+|+||||||||+|+|+|..
T Consensus        36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            4456788  9999999999999999999985

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.00  E-value=9.4e-10  Score=72.62  Aligned_cols=61  Identities=25%  Similarity=0.287  Sum_probs=39.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      +...++|+|++|+|||||+|.|++........ ..+.+......... .......++||||+.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~   67 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHT-EGAYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEE-ETTEEEEEESSSSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEE-ECCeeEEEEECcCCC
Confidence            34689999999999999999999986432210 11111111111122 245677889999986

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.00  E-value=3.9e-09  Score=69.72  Aligned_cols=61  Identities=26%  Similarity=0.376  Sum_probs=39.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++|+|.+|+|||||+|.|++.......  ....++................++||||+...
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs--~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~   68 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS--PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP   68 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC--SSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeec--CCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence            46999999999999999999987553211  11112111111111124667889999999764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.99  E-value=2.4e-09  Score=65.26  Aligned_cols=61  Identities=26%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|+|++|+|||||++.|++........  ...+.........+ ......++|+||....
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~   67 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSL   67 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCcc
Confidence            3689999999999999999999864332221  11222222233333 4677899999998765

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.99  E-value=1.6e-10  Score=71.68  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=25.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+|++++|+||||||||||+++|+++.+
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4679999999999999999999999753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.99  E-value=2.4e-09  Score=69.50  Aligned_cols=63  Identities=35%  Similarity=0.495  Sum_probs=40.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ..+++++|.+|+|||||+|.|++......+. ..+.+.......... ......++||||+.+..
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~  101 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGG  101 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCc
Confidence            4689999999999999999999876432221 111111111122222 46678999999997653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.98  E-value=2e-09  Score=70.11  Aligned_cols=61  Identities=26%  Similarity=0.390  Sum_probs=42.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ..++|+|.+|+|||||+|.|++.....+.  ..+.+.........+ ....+.++|+||+++..
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~--~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~   64 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLT   64 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTCEEEEE--CTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeeEEEEEEEEEe-CCCceEEEECcCCCccc
Confidence            67999999999999999999998643222  123333333333343 45678899999998764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.98  E-value=3.2e-09  Score=69.60  Aligned_cols=63  Identities=22%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~   85 (107)
                      ....++++|.+|+|||||+|.|++......+.. .+.|....  ....  .....++||||+......
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~--~~~~--~~~~~l~DtpG~~~~~~~  181 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQ--WVKV--GKELELLDTPGILWPKFE  181 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------C--CEEE--TTTEEEEECCCCCCSCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeE--EEEe--CCCEEEEECcCcCCCCCC
Confidence            346899999999999999999998765444321 12222221  1222  346789999999876443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.98  E-value=3.9e-11  Score=80.19  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=30.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ..++++++|+|+||||||||++.|+++..+..|.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~  159 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFS  159 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence            3578999999999999999999999998887664

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.97  E-value=1.4e-10  Score=75.34  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccc-cc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK-AS   48 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-~g   48 (107)
                      ..+|..++|+||||||||||+++|+++..+. .|
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G   55 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY   55 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC
Confidence            4678999999999999999999999998776 55

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.97  E-value=2.3e-11  Score=85.02  Aligned_cols=38  Identities=13%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      ..+...++.+++|+|+||||||||+++|++++.+..|.
T Consensus       286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~  323 (503)
T 2yhs_A          286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKS  323 (503)
T ss_dssp             CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCe
Confidence            34456678999999999999999999999998877664

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.97  E-value=2.8e-09  Score=70.56  Aligned_cols=64  Identities=23%  Similarity=0.365  Sum_probs=41.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDLS   83 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~~   83 (107)
                      +.-.|+|+|.+|+|||||+|.|++....... ...+.+.......... . .....++||||+....
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~   73 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK   73 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc
Confidence            3457999999999999999999997644221 1111222222222222 4 6788999999998653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.97  E-value=1.5e-10  Score=72.19  Aligned_cols=27  Identities=37%  Similarity=0.578  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +++.++|+||||||||||+++|+++..
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            568899999999999999999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.97  E-value=1.9e-10  Score=73.04  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh-CCc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSIL-GRR   43 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~-g~~   43 (107)
                      ....+|++++|+||||||||||+++|+ ++.
T Consensus        22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            344578999999999999999999999 886

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.6e-10  Score=80.29  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      .+|++++|+||||||||||+++|+|+..+..|
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            47899999999999999999999999988877

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.95  E-value=2.9e-10  Score=79.36  Aligned_cols=37  Identities=19%  Similarity=0.086  Sum_probs=31.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS   52 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~   52 (107)
                      ...+ ++++|+||||||||||+++|+|+..++.|.+..
T Consensus        26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~   62 (483)
T 3euj_A           26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF   62 (483)
T ss_dssp             ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred             EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence            4455 899999999999999999999999998886443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.94  E-value=1.5e-09  Score=67.94  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....|+|+|.+|+|||||+|.|++... .... ...+.+.................++||||+...
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   92 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFAS-KTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA   92 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTT-CCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeec-CCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence            457899999999999999999998752 1111 111222222222222123467889999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.93  E-value=3.4e-10  Score=74.98  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=29.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .++++++|+||||||||||+++|+++..+.+|.
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~  132 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKK  132 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCE
Confidence            367999999999999999999999998887663

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.93  E-value=3.8e-10  Score=68.77  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHH
Q 038901           16 SNGERTVVLLGRTGNGKSATGNS   38 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~   38 (107)
                      ..+|++++|+|+||||||||+++
T Consensus         6 i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            6 IPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EESSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHH
Confidence            34689999999999999999994

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.92  E-value=1.9e-09  Score=74.07  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=40.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +.+..++|+|+||||||||||+|++......+..  ..+.........+.......+.|+|++..
T Consensus       155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~--ftTl~p~~G~V~~~~~~~~~l~DtpGli~  217 (416)
T 1udx_A          155 MLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYP--FTTLSPNLGVVEVSEEERFTLADIPGIIE  217 (416)
T ss_dssp             CCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCT--TCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCCccccCcc--cceecceeeEEEecCcceEEEEecccccc
Confidence            3457899999999999999999999865333211  11111122222321236678999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.92  E-value=8.9e-10  Score=67.72  Aligned_cols=27  Identities=26%  Similarity=0.465  Sum_probs=24.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..+|++++|+|+||||||||+++|++.
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            346799999999999999999999997

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.92  E-value=3.7e-09  Score=68.75  Aligned_cols=63  Identities=27%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEee-CC--cEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLK-DG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~-~~--~~~~v~d~p~~~~~   82 (107)
                      ..++|+|.+|+|||||+|.|++.........    ....+........... ..  ....++||||+.+.
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~   78 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA   78 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence            6799999999999999999988765443210    0011111111111111 12  37899999999644

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.91  E-value=5.6e-10  Score=69.89  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=27.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ..++++++|+|+||||||||+++|+++..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            467899999999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.90  E-value=3.5e-09  Score=73.06  Aligned_cols=60  Identities=30%  Similarity=0.358  Sum_probs=37.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ...++|+|+||+|||||+|.|+|......+. ..+.+.........+ ......++||||+.
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~-~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~  239 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLR  239 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCC-CCCCcCCceEEEEEE-CCEEEEEEECCCCc
Confidence            4689999999999999999999986532221 112222222223333 45667888999974

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.90  E-value=7.6e-09  Score=66.91  Aligned_cols=62  Identities=29%  Similarity=0.430  Sum_probs=42.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ...++|+|.+|+|||||+|.|++.....+..  .+.+.......... ......++|+||.+...
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~   66 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTY-KGYTINLIDLPGTYSLG   66 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEE-CCeEEEEEECCCcCccC
Confidence            3579999999999999999999876543221  12333332233332 45688999999998654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.90  E-value=1.1e-08  Score=60.67  Aligned_cols=61  Identities=30%  Similarity=0.366  Sum_probs=36.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..++++|+.|+|||||++.+++........ ....+.......... ......++|+||....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~   62 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVET-DRGRFLLVDTGGLWSG   62 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEe-CCceEEEEECCCCCCc
Confidence            468999999999999999998765321111 111111122222232 4567889999998763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.90  E-value=4.3e-10  Score=83.85  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      ...+|++++|+|+||||||||+++|+|+..++.|.+
T Consensus       695 ~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I  730 (986)
T 2iw3_A          695 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV  730 (986)
T ss_dssp             EEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            345789999999999999999999999999988854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.90  E-value=5.9e-10  Score=74.53  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=29.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      +|+.++|+|+||||||||+++|+++..+..|.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~  201 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI  201 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcE
Confidence            57899999999999999999999999888774

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.90  E-value=6.4e-10  Score=68.40  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +++|+||||||||||+++|+|+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.89  E-value=4.9e-10  Score=74.23  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...++|++++|+||||||||||+++|+|+.
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            345678999999999999999999999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.88  E-value=7.2e-10  Score=67.99  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=24.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +|+.++|+||||||||||++.|++...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            568999999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.88  E-value=5.8e-10  Score=69.65  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=24.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++.+++|+|+||||||||+++|+++..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678999999999999999999999754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.88  E-value=5.1e-10  Score=75.33  Aligned_cols=36  Identities=14%  Similarity=0.081  Sum_probs=31.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .+..+|++++|+|+||||||||+++|+|+..++.|.
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~  101 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV  101 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence            455688999999999999999999999999887663

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.85  E-value=1e-09  Score=72.59  Aligned_cols=33  Identities=15%  Similarity=0.115  Sum_probs=28.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc--cccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRA--FKAS   48 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~--~~~g   48 (107)
                      ..++.+++|+|+||||||||+++|+++..  +..|
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G  111 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR  111 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence            45679999999999999999999999876  5555

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.85  E-value=1.1e-09  Score=75.79  Aligned_cols=36  Identities=14%  Similarity=0.061  Sum_probs=32.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .+..+|++++|+|+||||||||+++|+|+..++.|.
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~  187 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIV  187 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEE
Confidence            566789999999999999999999999999887774

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.84  E-value=1.2e-09  Score=68.71  Aligned_cols=30  Identities=13%  Similarity=0.207  Sum_probs=25.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...+|++++|+||||||||||+++|++...
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345789999999999999999999998443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.84  E-value=5.8e-09  Score=64.24  Aligned_cols=26  Identities=31%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ..++|+|+||||||||++.|++...+
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            57999999999999999999987654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.84  E-value=2e-09  Score=68.93  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=27.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh---CCcccccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSIL---GRRAFKAS   48 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~---g~~~~~~g   48 (107)
                      +++++|+|+||||||||+++|+   |+..++.|
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G   59 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG   59 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence            5899999999999999999999   98877655

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.84  E-value=1.6e-09  Score=69.36  Aligned_cols=33  Identities=21%  Similarity=0.101  Sum_probs=25.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .......++.+++|+|+||||||||+++|+++.
T Consensus        17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            344556678999999999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.83  E-value=1.1e-09  Score=73.92  Aligned_cols=29  Identities=28%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKA   47 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~   47 (107)
                      +++++|+|+||||||||+++|+|+..+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            79999999999999999999999988876

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.83  E-value=8.1e-09  Score=70.56  Aligned_cols=30  Identities=20%  Similarity=0.162  Sum_probs=23.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....+..++|+|++|+|||||+|+|++...
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~   47 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA   47 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            344568899999999999999999998743

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.83  E-value=6.8e-09  Score=67.69  Aligned_cols=60  Identities=23%  Similarity=0.371  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ..++|+|++|+|||||+|.|++.....+..  .+.+..........  .....++|+||.+...
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~   63 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVKK--NKDLEIQDLPGIYSMS   63 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECTT--CTTEEEEECCCCSCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEec--CCeEEEEECCCcCccC
Confidence            579999999999999999999975332211  12222111111111  4567899999998653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.83  E-value=6.7e-09  Score=70.30  Aligned_cols=59  Identities=19%  Similarity=0.234  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+++|+|++|+|||||+|.|++........  ...+.........+ ....+.+.||||+..
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~--~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~  238 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTK--LFTTMSPKRYAIPI-NNRKIMLVDTVGFIR  238 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccCC--cccccCCEEEEEEE-CCEEEEEEeCCCchh
Confidence            359999999999999999999986532221  12222222223333 456778999999754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.82  E-value=1.2e-09  Score=73.29  Aligned_cols=34  Identities=21%  Similarity=0.152  Sum_probs=28.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ...++.+++|+|+||||||||+|+|+++..+..|
T Consensus        51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g   84 (337)
T 2qm8_A           51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH   84 (337)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence            3467899999999999999999999987766554

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.82  E-value=7.7e-09  Score=63.92  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++|+|+||||||||++.|++...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~   30 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEF   30 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCC
Confidence            5799999999999999999998754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.82  E-value=2.4e-09  Score=66.39  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      .+|.+++|+|+|||||||+++.|++...+..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            45789999999999999999999998744433

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.82  E-value=3.4e-09  Score=71.77  Aligned_cols=63  Identities=22%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc-cc---CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFK-AS---AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      +..++++|.+|+|||||+|+|++..... ..   ......++... .....  .....++||||+.+...
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~-~~~~~--~~~~~liDtPG~~~~~~  226 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL-IDIPL--DEESSLYDTPGIINHHQ  226 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE-EEEES--SSSCEEEECCCBCCTTS
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce-EEEEe--cCCeEEEeCCCcCcHHH
Confidence            4679999999999999999999863211 00   01112222111 11222  22379999999987643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.81  E-value=1e-09  Score=74.35  Aligned_cols=60  Identities=25%  Similarity=0.240  Sum_probs=38.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc-----cccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR-----AFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      +..++++|.+|+|||||+|+|++..     ....+ ...+.|....  ...  -.....++||||+....
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~--~~~--~~~~~~liDtPG~~~~~  226 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMI--EIP--LESGATLYDTPGIINHH  226 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEE--EEE--CSTTCEEEECCSCCCCS
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeE--EEE--eCCCeEEEeCCCcCcHH
Confidence            4679999999999999999999862     12111 1112222211  122  23347999999998654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.80  E-value=1.5e-08  Score=69.66  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ..++|+|+||+|||||+|+|+|...+..+
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~   60 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTDLYSPE   60 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence            46899999999999999999998875433

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.78  E-value=3.7e-09  Score=66.22  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .+|..++|+||||||||||++.|++...+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            46789999999999999999999988754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.78  E-value=2.7e-08  Score=66.99  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..|+|+|.+|||||||+|+|+|..
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~   58 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKD   58 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            489999999999999999999954

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.78  E-value=1.5e-08  Score=69.92  Aligned_cols=60  Identities=30%  Similarity=0.435  Sum_probs=36.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..++|+|.+|+|||||+|.|++...+... ...+.+.........+ ....+.++||||+..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~   61 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFD   61 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccc
Confidence            36899999999999999999987543222 1122333333344444 566789999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.78  E-value=3.5e-09  Score=68.19  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=28.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh---CCccccccC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSIL---GRRAFKASA   49 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~---g~~~~~~g~   49 (107)
                      .++.+++|+|+|||||||+++.|+   |+..++.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~   60 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGA   60 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence            457899999999999999999999   888777663

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.77  E-value=2.5e-09  Score=73.55  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      .++..++|+||||||||||+++|+++..+..|
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g  196 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSER  196 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence            46789999999999999999999999887766

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.77  E-value=3.2e-09  Score=74.70  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=28.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .+..++|+|+||||||||+++|+++..+..|.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gi  290 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKV  290 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCE
Confidence            56789999999999999999999999877663

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.77  E-value=5.1e-08  Score=61.46  Aligned_cols=62  Identities=27%  Similarity=0.229  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....|+|+|.+|+|||||+|.|++........  ...+.......... ......++|+||+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~   88 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSY--SFTTKNLYVGHFDH-KLNKYQIIDTPGLLD   88 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-------CEEEEEEEE-TTEEEEEEECTTTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCcceeeeeeeeec-CCCeEEEEECCCCcC
Confidence            345789999999999999999999865432211  11122222222222 456788999999964

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.76  E-value=2.2e-08  Score=60.32  Aligned_cols=61  Identities=20%  Similarity=0.342  Sum_probs=37.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +...++|+|++|+|||||++.+++........  ...+.........+ ......++|+||...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~   67 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEA   67 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHH
Confidence            44789999999999999999998865432211  01111111122222 445667889998643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.76  E-value=3.7e-08  Score=66.32  Aligned_cols=62  Identities=27%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++++|++|+|||||+|.|++........  ...+.......... ......++||||+...
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~  227 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFED-GYFRYQIIDTPGLLDR  227 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECC--TTCSSCEEEEEEEE-TTEEEEEEECTTTSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCeeeceeEEEEEe-cCceEEEEeCCCcccc
Confidence            44789999999999999999999976432221  11122222222222 4567899999998653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.76  E-value=1.8e-08  Score=60.16  Aligned_cols=60  Identities=27%  Similarity=0.211  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ..++++|++|+|||||+|.+++......-....+.+..  ........ .....++|+||...
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~   67 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLER   67 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGG
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchh
Confidence            67999999999999999999876532211111111111  11122211 24677999999743

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.76  E-value=9.2e-09  Score=67.92  Aligned_cols=29  Identities=28%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC-cccccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR-RAFKAS   48 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~-~~~~~g   48 (107)
                      ..++|+|+||+|||||+|+|++. ..+..|
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g   48 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLYPERV   48 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC--------
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence            67899999999999999999997 555555

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.75  E-value=2e-08  Score=61.33  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+|++|+|||||++.+++..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            469999999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.75  E-value=2.7e-08  Score=60.88  Aligned_cols=61  Identities=28%  Similarity=0.408  Sum_probs=35.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....++|+|++|+|||||+|.|++... .... ...+.+....  ....  .....++|+||+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~t~~~~--~~~~--~~~~~l~Dt~G~~~~   82 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTS-SKPGKTQTLN--FYII--NDELHFVDVPGYGFA   82 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEE--EEEE--TTTEEEEECCCBCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccC-CCCCceeeEE--EEEE--CCcEEEEECCCCCcc
Confidence            3457899999999999999999998642 1111 1111111111  1111  335789999997654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.75  E-value=1e-08  Score=66.59  Aligned_cols=60  Identities=28%  Similarity=0.400  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      ..++++|.+|+|||||+|.|++......+.. .+.+...  ....  ......++||||+.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~--~~~~--~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGI--QWFS--LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCS--CEEE--CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccce--EEEE--eCCCEEEEECCCcccCcC
Confidence            4899999999999999999998766444321 1122111  1111  234678999999987643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.75  E-value=5.1e-09  Score=70.83  Aligned_cols=24  Identities=21%  Similarity=0.151  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+|.+|+|||||+|+|++..
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~   26 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG   26 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            679999999999999999999855

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.74  E-value=6.1e-08  Score=57.83  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=36.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      ...++++|+.|+|||||+|.+++......-......+..   ....... .....++|+||....
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~   64 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQF   64 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhh
Confidence            367999999999999999999975432211111111111   1111111 235789999997654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.73  E-value=2.6e-09  Score=72.46  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccc-cc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK-AS   48 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~-~g   48 (107)
                      ..++..++|+||||||||||+++|+++..+. .|
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g  166 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY  166 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc
Confidence            4567899999999999999999999988776 45

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.73  E-value=4.6e-09  Score=64.56  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +++++|+|+||||||||++.|++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            57899999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.73  E-value=5.3e-09  Score=64.98  Aligned_cols=29  Identities=24%  Similarity=0.515  Sum_probs=23.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...++++++|+|+||||||||+++|++..
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            34567999999999999999999998654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.73  E-value=2.8e-08  Score=60.84  Aligned_cols=62  Identities=26%  Similarity=0.290  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~~   82 (107)
                      ...|+|+|++|+|||||++.|++...........+....  ....... ......++|+||....
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~   87 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFS--TRTVMLGTAAVKAQIWDTAGLERY   87 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEE--EEEEEETTEEEEEEEEEESCCCTT
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCCchhh
Confidence            357999999999999999999875433221111111111  1111111 1345688999998654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.73  E-value=3e-09  Score=71.84  Aligned_cols=30  Identities=30%  Similarity=0.296  Sum_probs=26.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      .++..++|+||||||||||+++|+++..+.
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            345799999999999999999999998776

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.73  E-value=2.4e-08  Score=59.54  Aligned_cols=60  Identities=18%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~   81 (107)
                      ..++++|+.|+|||||++.+++...........+.+.  ........ ......++|+||...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~   64 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF--LTQRVTINEHTVKFEIWDTAGQER   64 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEECCCChh
Confidence            5799999999999999999986543321111111111  11222221 123678999999643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.72  E-value=1.1e-08  Score=70.93  Aligned_cols=61  Identities=30%  Similarity=0.299  Sum_probs=35.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..+|+|+|.+|+|||||+|.|++....... ...+.+.........+ ....+.++||||+..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~   83 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDI   83 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEE-CCceEEEEECCCCCC
Confidence            368999999999999999999986543221 1122232222233333 456789999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.72  E-value=4.9e-08  Score=59.64  Aligned_cols=62  Identities=18%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~   81 (107)
                      ....++|+|+.|+|||||++.|++...........+.+  ......... ......++|+||...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~   83 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYRHDKRIKLQIWDTAGQER   83 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEETTEEEEEEEEECCSCCS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEECCeEEEEEEEeCCCcHH
Confidence            34689999999999999999998765322111111111  111112211 134678899999654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.72  E-value=5.9e-08  Score=58.99  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=38.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      .+...++++|++|+|||||++.+++.. ...    ...+.........+ ......++|+||.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~   72 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVGGQ   72 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEECCS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECCCC
Confidence            455889999999999999999999765 211    11111122233333 5677889999986

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.72  E-value=5.7e-09  Score=65.19  Aligned_cols=31  Identities=32%  Similarity=0.560  Sum_probs=25.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+..+++.++|+||||||||||++.|++...
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3445679999999999999999999997654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.71  E-value=4.2e-08  Score=58.59  Aligned_cols=59  Identities=20%  Similarity=0.130  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      ..++++|++|+|||||++.+++..............  ......... ......++|+||..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~   66 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNIGGKRVNLAIWDTAGQE   66 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEESSSCEEEEEEEECCCC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEECCEEEEEEEEECCCcH
Confidence            679999999999999999998654322111111111  111112221 12356788999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.71  E-value=2.8e-08  Score=59.85  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=36.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~   80 (107)
                      ...++|+|++|+|||||++.|++.......  ....+.........+ ..  ....++|+||..
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~   69 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQE   69 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEEE-TTEEEEEEEEEETTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEEE-CCEEEEEEEEcCCCch
Confidence            367999999999999999999986543221  122222222222332 33  467888999854

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.71  E-value=3.4e-08  Score=58.80  Aligned_cols=61  Identities=20%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ...++++|++|+|||||+|.|++...........+.  ........... .....++|+||...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~   66 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV--DFLERQIQVNDEDVRLMLWDTAGQEE   66 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSS--SEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEE--EEEEEEEEECCEEEEEEEEcCCCcHh
Confidence            367999999999999999999875432211111111  11111222211 23678889998643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.71  E-value=4.1e-08  Score=59.89  Aligned_cols=60  Identities=23%  Similarity=0.285  Sum_probs=37.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....++|+|++|+|||||+|.|++....... ...+.+.....  ..  ......++|+||+..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~--~~--~~~~~~i~Dt~G~~~   80 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINF--YL--VNSKYYFVDLPGYGY   80 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEE--EE--ETTTEEEEECCCBSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEE--EE--ECCcEEEEECCCCcc
Confidence            34468999999999999999999987632221 11111111111  11  234567999999754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.70  E-value=3.2e-08  Score=58.98  Aligned_cols=60  Identities=23%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ..++|+|+.|+|||||++.+++...........+.+..  ........ .....++|+||...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G~~~   67 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL--TQTVCLDDTTVKFEIWDTAGQER   67 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCcHH
Confidence            57999999999999999999864332211111111111  11122211 34678899999653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.70  E-value=3.9e-08  Score=70.21  Aligned_cols=65  Identities=25%  Similarity=0.243  Sum_probs=39.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeeeE--EeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTT--VLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~d~p~~~~~   82 (107)
                      +..+|+|+|++|+|||||+|.|+|.... ..+......+........  .......+.++||||+.+.
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            3467999999999999999999997642 111111112211111000  0113567899999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.70  E-value=6.5e-08  Score=65.34  Aligned_cols=63  Identities=29%  Similarity=0.350  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CceeeEeeeeeEEee-CC--cEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SGVTTTCEMKTTVLK-DG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~-----~~~~~~~~~~~~~~~-~~--~~~~v~d~p~~~~~   82 (107)
                      ..++|+|++|+|||||+|.|++...+..+...     ...+........... ..  ....++||||+.+.
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~  108 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA  108 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence            56899999999999999999887655443211     011111111111111 11  25789999999543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.69  E-value=6.3e-08  Score=59.81  Aligned_cols=65  Identities=25%  Similarity=0.262  Sum_probs=37.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEe-eCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVL-KDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~-~~~~~~~v~d~p~~~~~   82 (107)
                      .+..+...++|+|..|+|||||+|.|++........    .+.... ...... .......++|+||....
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   85 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD----PTVENTYSKIVTLGKDEFHLHLVDTAGQDEY   85 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC----CCSEEEEEEEEC----CEEEEEEEECCCCTT
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC----CccceEEEEEEEECCEEEEEEEEECCCccch
Confidence            344556789999999999999999999765432211    111111 111111 12456789999997543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.68  E-value=4.2e-08  Score=60.20  Aligned_cols=61  Identities=26%  Similarity=0.200  Sum_probs=36.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      +...|+|+|+.|+|||||++.+++......-....+.+...  ...... ......++|+||..
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~   83 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT--KTVPCGNELHKFLIWDTAGQE   83 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEE--EEEECSSSEEEEEEEEECCSG
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEE--EEEEeCCEEEEEEEEcCCCch
Confidence            34689999999999999999998755321111111111111  111111 23467889999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.68  E-value=4.3e-10  Score=71.70  Aligned_cols=31  Identities=23%  Similarity=0.153  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG   50 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~   50 (107)
                      .+++|+||||||||||+++|++...+..|.+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i   58 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL   58 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence            5678999999999999999999998887754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.68  E-value=9.2e-08  Score=57.13  Aligned_cols=57  Identities=21%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      +...++++|++|+|||||++.+++......     ..+.........+ ......++|+||..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~   62 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLT   62 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCCh
Confidence            347899999999999999999976443211     1111122223333 46778899999864

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.68  E-value=1.6e-08  Score=69.62  Aligned_cols=67  Identities=33%  Similarity=0.393  Sum_probs=39.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      .....++|+|..|+|||||+|.|++....... ...+.+.........+.....+.++||||+.+...
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~   98 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE   98 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc
Confidence            34478999999999999999999986543221 11222333333334442334789999999976543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.67  E-value=4e-08  Score=58.70  Aligned_cols=61  Identities=20%  Similarity=0.144  Sum_probs=32.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      ..++|+|++|+|||||++.+++.........  ..+............ .....++|+||....
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   64 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMVDKEEVTLIVYDIWEQGDA   64 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEECCeEEEEEEEECCCcccc
Confidence            4689999999999999999987554322211  111111112222211 235678899987643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.67  E-value=2.5e-08  Score=69.59  Aligned_cols=62  Identities=26%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +..|+|+|++|+|||||+|.|++........ ..+.+.........+ ....+.++||||+...
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~  294 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIH-DKTMFRLTDTAGLREA  294 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCCCcc
Confidence            4579999999999999999999875332211 111222222223333 5678899999998653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.67  E-value=4.8e-08  Score=58.75  Aligned_cols=59  Identities=25%  Similarity=0.230  Sum_probs=35.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~   80 (107)
                      ...++|+|++|+|||||++.+++........  .............+ ..  ....++|+||..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~   67 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQE   67 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEEE-CCEEEEEEEEeCCCch
Confidence            3679999999999999999998654322111  11111111122222 22  367889999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.67  E-value=1e-08  Score=62.61  Aligned_cols=28  Identities=29%  Similarity=0.328  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      ++ ..+|+|+||||||||+++|.....+.
T Consensus        26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~   53 (182)
T 3kta_A           26 KG-FTAIVGANGSGKSNIGDAILFVLGGL   53 (182)
T ss_dssp             SS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            44 89999999999999999998766543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.67  E-value=1.7e-07  Score=56.90  Aligned_cols=56  Identities=25%  Similarity=0.369  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      .++|+|++|+|||||++.+++.......  ..+.+...  ....+ .  ...++|+||+....
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~   58 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKKVRRGK--RPGVTRKI--IEIEW-K--NHKIIDMPGFGFMM   58 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSS--STTCTTSC--EEEEE-T--TEEEEECCCBSCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcCCccCC--CCCcccee--EEEec-C--CEEEEECCCccccc
Confidence            6899999999999999999986532211  11111111  11222 2  56789999976543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.67  E-value=9.7e-09  Score=65.19  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...+|..++|.|+|||||||+++.|++.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            4467899999999999999999999986

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.67  E-value=6.7e-08  Score=59.57  Aligned_cols=60  Identities=20%  Similarity=0.234  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ..++|+|+.|+|||||++.|++...........+.+  .......... .....++|+||...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTIYRNDKRIKLQIWDTAGLER   69 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EEEEEEEECCeEEEEEEEECCCchh
Confidence            679999999999999999999865332211111111  1111222211 34678899999743

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.66  E-value=5.3e-08  Score=58.77  Aligned_cols=61  Identities=23%  Similarity=0.262  Sum_probs=36.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ...++|+|+.|+|||||++.+++...........+...  ......+.. .....++|+||...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~   73 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQER   73 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE--EEEEEEETTEEEEEEEEECCCSGG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE--EEEEEEECCEEEEEEEEeCCCChh
Confidence            36799999999999999999987644322111111111  111122211 23678899999643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.66  E-value=1.2e-08  Score=63.33  Aligned_cols=28  Identities=18%  Similarity=0.178  Sum_probs=25.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .++.+++|+|+|||||||+++.|++...
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5679999999999999999999998765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.66  E-value=1e-07  Score=56.49  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      ..++|+|++|+|||||++.+++........  ..... ........ ..  ....++|+||....
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~-~~~~~~~~-~~~~~~~~l~D~~G~~~~   64 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD--PTIED-FYRKEIEV-DSSPSVLEILDTAGTEQF   64 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCC--TTCCE-EEEEEEEE-TTEEEEEEEEECCCTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCcccCC--CCcce-eEEEEEEE-CCEEEEEEEEECCCchhh
Confidence            679999999999999999998654322111  11111 11122222 22  34789999997644

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.66  E-value=1.3e-08  Score=67.64  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      -++++|+|+||||||||+|.|++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4689999999999999999999886

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.66  E-value=5.6e-08  Score=58.42  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ...++|+|..|+|||||++.|++.............+..  ........ .....++|+||...
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~   76 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG--TRIIEVSGQKIKLQIWDTAGQER   76 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE--EEEEEETTEEEEEEEEECTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCeEEEEEEEECCCChH
Confidence            468999999999999999999875532211111111111  11112211 23678899999654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.66  E-value=7.7e-08  Score=63.55  Aligned_cols=61  Identities=23%  Similarity=0.298  Sum_probs=39.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ...++|+|.+|+|||||++.+++...+... ...+.|.........+.......++|+||..
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~   63 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQD   63 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence            468999999999999999998876433221 1122233222233333245678899999975

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.65  E-value=7.8e-08  Score=58.76  Aligned_cols=62  Identities=19%  Similarity=0.122  Sum_probs=39.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+...|+|+|..|+|||||++.+++.......   ...+.........+ ......++|+||....
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~   80 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRY   80 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHH
Confidence            34578999999999999999999986522221   11121122233333 4567899999996543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.65  E-value=5.5e-08  Score=58.61  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....++|+|+.|+|||||++.+++..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            34689999999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.65  E-value=1.2e-07  Score=57.98  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....|+|+|+.|+|||||+|.|++...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~   32 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTF   32 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcC
Confidence            347899999999999999999998653

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.65  E-value=3.4e-08  Score=66.96  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+|++|+|||||+|+|++..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.64  E-value=4.4e-08  Score=58.43  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ..++|+|++|+|||||++.+++.......  ................. .....++|+||...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   64 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQER   64 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence            57999999999999999999865432211  11111111112222211 23578889998643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.64  E-value=5.6e-08  Score=58.42  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ..++|+|+.|+|||||++.+++.......  ............... ..  ....++|+||...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~   75 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYL-EDRTVRLQLWDTAGQER   75 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEEE-CCeEEEEEEEECCCcHH
Confidence            67999999999999999999864432211  111111121222222 22  3678899999643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.64  E-value=5.7e-08  Score=59.39  Aligned_cols=60  Identities=23%  Similarity=0.259  Sum_probs=37.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ...++|+|+.|+|||||++.|++.......  ....+.......... ..  ....++|+||...
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~   77 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER   77 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHh
Confidence            367999999999999999999875433221  111222222222232 22  3578889999643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.64  E-value=7.8e-08  Score=57.65  Aligned_cols=59  Identities=27%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ...++|+|++|+|||||++.+++........ ..+.+..  .....+ ..  ....++|+||...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~~~~~~~D~~g~~~   64 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVY--ERTLTV-DGEDTTLVVVDTWEAEK   64 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEE--EEEEEE-TTEEEEEEEECCC----
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCccccC-cccccee--EEEEEE-CCEEEEEEEEecCCCCc
Confidence            3679999999999999999999865432211 1111111  112222 22  2567899998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.64  E-value=8e-08  Score=58.67  Aligned_cols=61  Identities=11%  Similarity=0.155  Sum_probs=36.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~   80 (107)
                      +...|+|+|..|+|||||++.+++........  ................ .....++|+||..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   80 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--ATIGVDFRERAVDIDGERIKIQLWDTAGQE   80 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--CCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence            34689999999999999999998654322111  1111111112222211 2467899999964

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.63  E-value=2e-08  Score=60.89  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .++.+++|+|+|||||||+++.|++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            45789999999999999999999754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.63  E-value=7.9e-08  Score=59.31  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=36.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~   80 (107)
                      ....++|+|+.|+|||||++.|++.......  ................. .....++|+||..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQE   68 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence            3468999999999999999999876533211  11111111112222211 2467889999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.63  E-value=7.5e-08  Score=59.64  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      .....|+|+|++|+|||||++.|++.......  ....+.........+ ..  ....++|+||...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~   81 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQER   81 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHH
Confidence            34578999999999999999999865432211  111111111122222 22  4678999998643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.63  E-value=2.9e-07  Score=55.32  Aligned_cols=61  Identities=21%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      ....++|+|..|+|||||+|.+++.......  . ............. ..  ....++|+||....
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~-~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~   70 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDY--D-PTIEDSYTKICSV-DGIPARLDILDTAGQEEF   70 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSC--C-TTCCEEEEEEEEE-TTEEEEEEEEECCCTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCcccc--C-CCcCceEEEEEEE-CCEEEEEEEEECCCchhh
Confidence            4478999999999999999999876322111  1 1111111122222 22  35778999997654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.63  E-value=1.3e-07  Score=57.93  Aligned_cols=63  Identities=21%  Similarity=0.190  Sum_probs=38.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +......|+|+|..|+|||||++.+++........   ..+......... .......++|+||...
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~   75 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFE-KGRVAFTVFDMGGAKK   75 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEE-ETTEEEEEEEECCSGG
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEE-eCCEEEEEEECCCCHh
Confidence            34455789999999999999999999866443111   111112222233 2567889999998743

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.63  E-value=7.2e-08  Score=69.70  Aligned_cols=66  Identities=24%  Similarity=0.366  Sum_probs=42.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc--cccCC--------------CCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAF--KASAG--------------SSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~--~~g~~--------------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      ..++.+++|+|++|+|||||++.|++....  ..|.+              ....+.........+ ......++||||.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~   84 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGY   84 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCS
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCc
Confidence            356789999999999999999999954432  11211              011222222222333 4667899999998


Q ss_pred             CCC
Q 038901           80 FDL   82 (107)
Q Consensus        80 ~~~   82 (107)
                      .++
T Consensus        85 ~~f   87 (665)
T 2dy1_A           85 GDF   87 (665)
T ss_dssp             GGG
T ss_pred             cch
Confidence            654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.63  E-value=1.1e-07  Score=58.37  Aligned_cols=57  Identities=14%  Similarity=0.127  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ...++++|++|+|||||++.+++......     ..+.........+ ......++|+||...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~   79 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQ   79 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHH
Confidence            35899999999999999999987543211     1111111233333 456788999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.62  E-value=1.1e-07  Score=58.52  Aligned_cols=63  Identities=19%  Similarity=0.113  Sum_probs=34.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      .......|+|+|..|+|||||++.+++..... ..   ..+.... ...... ..  ....++|+||....
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~-~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~   81 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT-EY---IPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEF   81 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTC
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCC-CC---CCcccceeEEEEEE-CCEEEEEEEEECCCCHHH
Confidence            33445789999999999999999999765221 11   1111111 112222 33  25669999998643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.62  E-value=1.8e-09  Score=66.02  Aligned_cols=27  Identities=11%  Similarity=0.189  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      ++++|+|+||||||||++.|+++..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            579999999999999999999998876

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.62  E-value=2e-07  Score=56.48  Aligned_cols=60  Identities=25%  Similarity=0.397  Sum_probs=34.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCc--EEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQ--VVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~v~d~p~~~~~   82 (107)
                      ...++|+|++|+|||||+|.|++....... .  ..+.......... ...  ...++|+||....
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~   65 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY-D--PTIEDSYRKQVVI-DGETCLLDILDTAGQEEY   65 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCC-C--TTCCEEEEEEEEE-TTEEEEEEEEECCCC---
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCC-C--CCchheEEEEEEE-CCcEEEEEEEECCCcHHH
Confidence            367999999999999999999865432211 1  1111111122222 232  3567999997544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.62  E-value=1.3e-08  Score=70.17  Aligned_cols=60  Identities=30%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..|+|+|++|+|||||+|.|++...+... ...+.+.........+ ......++||||+..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~   63 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDI   63 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEEEEE-CCceEEEEECCCCCC
Confidence            47999999999999999999986543221 1122232222233333 356788999999863

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.62  E-value=1.4e-07  Score=55.93  Aligned_cols=60  Identities=27%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      ...++++|+.|+|||||++.+++....... ..  ............ ..  ....++|+||....
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~   65 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDY-EP--TKADSYRKKVVL-DGEEVQIDILDTAGQEDY   65 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCC-CT--TCCEEEEEEEEE-TTEEEEEEEEECCC---C
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCC-CC--CcceEEEEEEEE-CCEEEEEEEEECCCcchh
Confidence            367999999999999999999875432211 11  111111111222 22  35789999997543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.62  E-value=7.5e-08  Score=58.75  Aligned_cols=61  Identities=16%  Similarity=0.204  Sum_probs=36.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~   81 (107)
                      ...++|+|+.|+|||||++.|++......-  ................ ......++|+||...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   76 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQER   76 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence            368999999999999999999875432211  1111111111222221 124678889999753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.61  E-value=1.3e-08  Score=61.57  Aligned_cols=26  Identities=31%  Similarity=0.584  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +.+++|+|++||||||+.+.|++...
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.61  E-value=1.7e-07  Score=57.00  Aligned_cols=58  Identities=22%  Similarity=0.251  Sum_probs=37.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....++|+|++|+|||||++.+++.......     .+.........+ ......++|+||...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~   72 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRK   72 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEEE-CCEEEEEEECCCCHH
Confidence            3478999999999999999999976421110     111111122333 456778899998643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.61  E-value=1.1e-08  Score=66.92  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=30.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ....+|++++|+|+||+|||||++.|++...+..|
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G   64 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG   64 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence            45567899999999999999999999998776544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.60  E-value=7.9e-08  Score=59.00  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ...|+|+|..|+|||||++.|++........  .............+.. .....++|+||...
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   87 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVELRGKKIRLQIWDTAGQER   87 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEEECCeEEEEEEEeCCCcHH
Confidence            4579999999999999999999765332211  1111111122222211 23678899999643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.60  E-value=7.5e-08  Score=58.41  Aligned_cols=59  Identities=19%  Similarity=0.254  Sum_probs=36.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~   80 (107)
                      ...++|+|+.|+|||||++.+++.......  ............... ..  ....++|+||..
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~   70 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINV-GGKYVKLQIWDTAGQE   70 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence            367999999999999999999875433221  111111111122222 22  367899999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.60  E-value=1.1e-07  Score=58.87  Aligned_cols=62  Identities=21%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      ...|+|+|+.|+|||||++.|++........  .............+.. .....++|+||....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   70 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVELDGKTVKLQIWDTAGQERF   70 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEEETTEEEEEEEECCTTTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEECCEEEEEEEEeCCChHHH
Confidence            3679999999999999999998754332111  1111111112222211 236789999997543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.60  E-value=1.8e-07  Score=55.30  Aligned_cols=60  Identities=20%  Similarity=0.320  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      ..++++|+.|+|||||++.+++....... .. .... .......... .....++|+||....
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~   64 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-DP-TIED-SYRKQVVIDGETCLLDILDTAGQEEY   64 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSCC-CT-TCCE-EEEEEEEETTEEEEEEEEECCCCSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCcccc-CC-ccce-EEEEEEEECCEEEEEEEEECCCchhh
Confidence            56999999999999999999875432211 11 1111 1111122211 234678999997653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.60  E-value=1.5e-07  Score=57.56  Aligned_cols=58  Identities=19%  Similarity=0.135  Sum_probs=37.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      +...++|+|+.|+|||||++.+++.......    ..+.......... ......++|+||..
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~Dt~G~~   78 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKITK-GNVTIKLWDIGGQP   78 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEE-TTEEEEEEEECCSH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEEe-CCEEEEEEECCCCH
Confidence            4568999999999999999999865432111    1111111222232 46678899999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.59  E-value=1.4e-07  Score=56.88  Aligned_cols=61  Identities=23%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ...++|+|++|+|||||++.+++....... ................ ..  ....++|+||...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~   72 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER   72 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH
Confidence            367999999999999999999875542211 1111111111111122 22  3678889998653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.59  E-value=9.1e-08  Score=58.98  Aligned_cols=64  Identities=23%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      .....|+|+|+.|+|||||++.+++......-....+.+.  ......... .....++|+||....
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~   90 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF--QMKTLIVDGERTVLQLWDTAGQERF   90 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------C--EEEEEEETTEEEEEEEEECTTCTTC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcccee--EEEEEEECCEEEEEEEEECCCCcch
Confidence            3457899999999999999999987543211100011111  111122211 235789999997654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.59  E-value=1.6e-07  Score=55.85  Aligned_cols=59  Identities=22%  Similarity=0.242  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEee-CCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLK-DGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~v~d~p~~~~~   82 (107)
                      ..++++|.+|+|||||++.+++.......    ..+.... ....... ......++|+||....
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   64 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF   64 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHH
Confidence            57999999999999999999874332111    1111111 1111221 1235788999997654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.59  E-value=1.9e-08  Score=75.16  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+|++++|+|+||||||||+++|++
T Consensus       457 ~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          457 RLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            345789999999999999999999994

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.59  E-value=1.4e-07  Score=57.34  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...|+|+|+.|+|||||++.|++..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            3679999999999999999998644

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.59  E-value=2.2e-08  Score=72.28  Aligned_cols=28  Identities=29%  Similarity=0.255  Sum_probs=23.1

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHH
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATG   36 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll   36 (107)
                      .........+|++++|+||||||||||+
T Consensus        34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            3344555678899999999999999997

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.59  E-value=9.2e-09  Score=62.79  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=27.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ++..++|+||||+|||||+++|++...+..|
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999988765555

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.59  E-value=1.7e-07  Score=61.66  Aligned_cols=26  Identities=31%  Similarity=0.502  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      -..|+|+|..|+|||||+|.|+|...
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            36799999999999999999999764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.58  E-value=1.3e-07  Score=57.20  Aligned_cols=60  Identities=20%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      ...++|+|++|+|||||++.+++......- ... ..... ...... ..  ....++|+||....
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-~~t-~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~   67 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSY-DPT-IENTF-TKLITV-NGQEYHLQLVDTAGQDEY   67 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCC-CTT-CCEEE-EEEEEE-TTEEEEEEEEECCCCCTT
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCC-ccccE-EEEEEE-CCEEEEEEEEeCCCchhh
Confidence            467999999999999999999843322111 111 11111 122222 33  35579999997643

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.58  E-value=1.8e-08  Score=62.69  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++.+++|+|++|||||||++.|.+...
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45679999999999999999999987543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.57  E-value=1.4e-07  Score=56.01  Aligned_cols=55  Identities=15%  Similarity=0.108  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .++++|++|+|||||++.+++......     ..+.......... ......++|+||...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~   56 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK   56 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh
Confidence            589999999999999999976432211     1111111122332 456788999999753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.57  E-value=1.9e-07  Score=57.20  Aligned_cols=62  Identities=18%  Similarity=0.151  Sum_probs=36.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      ....|+|+|.+|+|||||++.|++................   ....... .....++|+||....
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~   69 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR---QVISCDKSVCTLQITDTTGSHQF   69 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE---EEEEETTEEEEEEEEECCGGGSC
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee---EEEEECCEEEEEEEEeCCChHHh
Confidence            3468999999999999999999874432211111111111   1111111 235788999997543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.57  E-value=2.5e-07  Score=55.93  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=37.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      +...|+|+|+.|+|||||++.|++.......  . ..+.......... ..  ....++|+||....
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~-~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~   79 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--E-PTKADSYRKKVVL-DGEEVQIDILDTAGQEDY   79 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--C-TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcC--C-CccceEEEEEEEE-CCEEEEEEEEECCCCccc
Confidence            3478999999999999999999865432211  1 1111111112222 22  35789999997644

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.57  E-value=6.3e-08  Score=58.59  Aligned_cols=59  Identities=22%  Similarity=0.280  Sum_probs=35.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+...++|+|++|+|||||++.+++........ ..+.    ......+ ......++|+||...
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~~----~~~~~~~-~~~~~~i~Dt~G~~~   74 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGF----NVETLSY-KNLKLNVWDLGGQTS   74 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STTC----CEEEEEE-TTEEEEEEEEC----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCcc----ceEEEEE-CCEEEEEEECCCCHh
Confidence            345889999999999999999998644322111 1111    1122232 456778889998754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.57  E-value=2.1e-08  Score=69.78  Aligned_cols=62  Identities=26%  Similarity=0.290  Sum_probs=34.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +..++|+|++|+|||||+|.|++........ ..+.+.........+ ....+.++||||+...
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~  285 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVV-GGIPVQVLDTAGIRET  285 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEE-TTEEEEECC-------
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEE-CCEEEEEEECCccccc
Confidence            4679999999999999999999864332211 111222111122333 5667889999998543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.57  E-value=1.1e-07  Score=58.82  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=33.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..++|+|++|+|||||++.+++.......     .+.........+ ......++|+||...
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~   81 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQ   81 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC---
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHh
Confidence            57999999999999999999875432111     111111122333 456778889998653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.56  E-value=2.9e-07  Score=56.63  Aligned_cols=61  Identities=26%  Similarity=0.354  Sum_probs=37.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      +...|+|+|+.|+|||||++.+++....... ..  ............ ..  ....++|+||....
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~   75 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-EP--TKADSYRKKVVL-DGEEVQIDILDTAGQEDY   75 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCCC-CC--ccceEEEEEEEE-CCEEEEEEEEcCCChhhh
Confidence            4478999999999999999999865432111 11  111111122222 22  36789999997654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.56  E-value=1.3e-07  Score=57.94  Aligned_cols=61  Identities=20%  Similarity=0.192  Sum_probs=35.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      ...++|+|+.|+|||||++.+++...........+..  .......... .....++|+||...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~   82 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNIDGKQIKLQIWDTAGQES   82 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEECCEEEEEEEEECCCchh
Confidence            4579999999999999999998754322111111111  1111222211 23678899998643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.56  E-value=2.6e-08  Score=69.67  Aligned_cols=62  Identities=23%  Similarity=0.351  Sum_probs=41.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC-CC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF-DL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~-~~   82 (107)
                      +..|+|+|.+|+|||||+|.|++...+.... ..+.+.........+ ....+.++||||+. ..
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~  305 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTAGVRSET  305 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSC
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEEEec-CCeEEEEEECCCccccc
Confidence            3679999999999999999999865332211 111222222233333 56778999999987 44

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.56  E-value=2.2e-07  Score=56.21  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +...++|+|+.|+|||||+|.+++..
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            44789999999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.55  E-value=1.2e-07  Score=56.41  Aligned_cols=58  Identities=24%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~   81 (107)
                      ..++|+|++|+|||||+|.+++.......  ....+...  ...... ......++|+||...
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~   61 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYD--RSIVVDGEEASLMVYDIWEQDG   61 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC------------CEEE--EEEEETTEEEEEEEEECC----
T ss_pred             EEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceE--EEEEECCEEEEEEEEECCCCcc
Confidence            57999999999999999999876543221  11111111  111111 123567889988654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.54  E-value=7.1e-08  Score=58.58  Aligned_cols=57  Identities=18%  Similarity=0.237  Sum_probs=36.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      +...++|+|..|+|||||++.+++........ ..+.    ......+ ......++|+||..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~----~~~~~~~-~~~~~~i~Dt~G~~   76 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGS----NVEEIVI-NNTRFLMWDIGGQE   76 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSS----SCEEEEE-TTEEEEEEEESSSG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCce----eeEEEEE-CCEEEEEEECCCCH
Confidence            45789999999999999999999765421110 0111    1122232 45678889999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.54  E-value=1.9e-08  Score=70.83  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHH--HhCCcccccc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNS--ILGRRAFKAS   48 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~--l~g~~~~~~g   48 (107)
                      ...+|++++|+|+||||||||+++  +.|+..+..|
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g   70 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP   70 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            456789999999999999999999  6788776555

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.54  E-value=2.5e-08  Score=67.10  Aligned_cols=28  Identities=25%  Similarity=-0.003  Sum_probs=24.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .+.+++|+|++|||||||+|.|++...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            4689999999999999999999985443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.54  E-value=1.2e-07  Score=58.54  Aligned_cols=58  Identities=17%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGL   79 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~   79 (107)
                      ...|+|+|+.|+|||||++.|++........  .............. ..  ....++|+||.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~   84 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQ   84 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCc
Confidence            4689999999999999999998754322111  11111111112222 22  46788999985

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.54  E-value=2.8e-08  Score=59.34  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=25.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      +++.++|+|+||+|||||+++|++...+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6789999999999999999999987754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.53  E-value=2.5e-07  Score=56.35  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=36.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +...++|+|..|+|||||++.+++.......     .+.........+ ......++|+||....
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~   73 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-----PTIGSNVEEIVI-NNTRFLMWDIGGQESL   73 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-----CCSCSSCEEEEE-TTEEEEEEECCC----
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCc-----CCCccceEEEEE-CCEEEEEEECCCCHhH
Confidence            4478999999999999999999964432111     011111122233 4577889999997543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.53  E-value=3.1e-07  Score=56.42  Aligned_cols=60  Identities=13%  Similarity=0.119  Sum_probs=35.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .+...++|+|+.|+|||||++.+++......     ..+.......... ......++|+||....
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~   86 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKI   86 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhH
Confidence            3457899999999999999999986433211     1111111222333 5667889999997543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.53  E-value=2.3e-08  Score=67.14  Aligned_cols=58  Identities=24%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      .|+|+|.+|+|||||+|.|++.......  ....+.........+.....+.++|+||+.
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~--~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i  217 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLPGLI  217 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCcccc--CCccccCceEEEEEeCCCceEEEecCCCCc
Confidence            5899999999999999999876533221  111222222223333223678899999964

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.53  E-value=6.3e-08  Score=60.37  Aligned_cols=61  Identities=28%  Similarity=0.288  Sum_probs=35.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ...|+|+|.+|+|||||+|.|++.................  ........  ....++|+||...
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~   73 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQGNVIKFNVWDTAGQEK   73 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTTSCEEEEEEEEECSGGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCCCcEEEEEEEecCCchh
Confidence            4689999999999999999998654322111111111111  11111111  4578999999754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.52  E-value=2.3e-08  Score=62.70  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=25.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ..+|+.++|+|+||||||||++.|++...+
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~   49 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR   49 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            446799999999999999999999966543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.52  E-value=1.8e-07  Score=58.15  Aligned_cols=59  Identities=20%  Similarity=0.244  Sum_probs=35.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~   80 (107)
                      ...++|+|++|+|||||++.+++......-  ..............+ ..  ....++|+||..
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~   86 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQE   86 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCcH
Confidence            357999999999999999999865432111  111111111122222 22  357889999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.51  E-value=1e-07  Score=58.20  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=34.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+|++|+|||||++.|++......- .....+..     ..+ ......++|+||....
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~~~~~~~-----~~~-~~~~~~l~Dt~G~~~~  104 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA-----ADY-DGSGVTLVDFPGHVKL  104 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCccc-ccCCCcee-----eee-cCCeEEEEECCCCchH
Confidence            4468999999999999999999976532210 00011110     011 2345577788887654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.51  E-value=4.6e-07  Score=55.62  Aligned_cols=62  Identities=26%  Similarity=0.359  Sum_probs=36.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~   81 (107)
                      .+...++|+|..|+|||||++.+++.......  ........ ........ .....++|+||...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~   88 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPTLESTY-RHQATIDDEVVSMEILDTAGQED   88 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCCCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence            34578999999999999999999875432211  11111111 11122211 24578899999765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.51  E-value=3e-07  Score=56.01  Aligned_cols=58  Identities=26%  Similarity=0.377  Sum_probs=33.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~   80 (107)
                      ...|+++|..|+|||||++.|++....... ..  ............ ..  ....++|+||..
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~   80 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DP--TIEDSYRKQVVI-DGETCLLDILDTAGQE   80 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSCC-CT--TCCEEEEEEEEE-TTEEEEEEEEECCC--
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCCcccc-CC--ccceEEEEEEEE-CCEEEEEEEEECCChH
Confidence            358999999999999999999865432111 11  111111112222 22  347789999865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.51  E-value=3.1e-08  Score=71.51  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=24.2

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ......+|++++|+||||||||||+++|+
T Consensus       341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            34445578999999999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.50  E-value=3.2e-07  Score=56.97  Aligned_cols=58  Identities=21%  Similarity=0.292  Sum_probs=36.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC--CcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD--GQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~v~d~p~~~   80 (107)
                      +...++|+|.+|+|||||++.+++........     +.........+..  .....++|+||..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   65 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-----SITDSSAIYKVNNNRGNSLTLIDLPGHE   65 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-----CCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-----CcceeeEEEEecCCCccEEEEEECCCCh
Confidence            34689999999999999999998755322211     1111112223321  4578999999975

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.50  E-value=2e-07  Score=56.81  Aligned_cols=59  Identities=17%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+...++++|++|+|||||++.+++....... .    +.......... ......++|+||...
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~   78 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-P----TVGVNLETLQY-KNISFEVWDLGGQTG   78 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-S----STTCCEEEEEE-TTEEEEEEEECCSSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcC-C----CCceEEEEEEE-CCEEEEEEECCCCHh
Confidence            34578999999999999999999764432211 0    11111122333 466788999998643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.49  E-value=8.6e-08  Score=66.08  Aligned_cols=62  Identities=26%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....++|+|.+|+|||||+|.|++......+. ..+.+.........+ ......++||||+..
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~  235 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRK  235 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTC
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEE-CCeEEEEEECCCcCc
Confidence            34689999999999999999999876532221 112222222223333 456789999999854

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.49  E-value=2.2e-07  Score=57.35  Aligned_cols=26  Identities=35%  Similarity=0.523  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....++|+|.+|+|||||++.+++..
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~   47 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQ   47 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhcc
Confidence            34689999999999999999998654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.49  E-value=1.6e-07  Score=58.42  Aligned_cols=31  Identities=13%  Similarity=0.174  Sum_probs=26.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .....++.+++|+|++||||||+.+.|.+..
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3445567899999999999999999999875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.48  E-value=3.8e-07  Score=55.13  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...++++|++|+|||||++.+++..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC
Confidence            4679999999999999999998543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.48  E-value=1.8e-07  Score=56.24  Aligned_cols=63  Identities=16%  Similarity=0.164  Sum_probs=37.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC--CcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD--GQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~v~d~p~~~~~   82 (107)
                      +...++|+|++|+|||||++.+++......-....+..  .......+..  .....++|+||....
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~~Dt~G~~~~   69 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD--FFLRRITLPGNLNVTLQIWDIGGQTIG   69 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSS--EEEEEEEETTTEEEEEEEEECTTCCTT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEE--EEEEEEEeCCCCEEEEEEEECCCCccc
Confidence            34679999999999999999998754321100000111  1112222211  256789999997643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.48  E-value=3.8e-07  Score=56.10  Aligned_cols=67  Identities=15%  Similarity=0.144  Sum_probs=37.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +..+...++|+|.+|+|||||++.+.+....... .....+.................++|+||....
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~   82 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF   82 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG-GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce-eeeccccceeeeeccCCCeeEEEEEECCCCHHH
Confidence            3445578999999999999999999986543321 111111110000010013356788999997553

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.47  E-value=6.9e-08  Score=64.37  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...+++|+|+||||||||+++|.++..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            346899999999999999999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.47  E-value=3e-07  Score=57.67  Aligned_cols=60  Identities=23%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ...|+|+|+.|+|||||++.|++........  .............+ ..  ....++|+||...
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~   74 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTAGQER   74 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTT
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCccc
Confidence            3679999999999999999998754322111  01111111112222 22  4678999999754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.46  E-value=2.8e-08  Score=70.48  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ..+|++++|+|+||||||||+++|++...+..|
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G  398 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG  398 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence            346799999999999999999999998776554

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.45  E-value=2.8e-07  Score=63.06  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .++|+|.+|+|||||+|.|++..
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999875

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.45  E-value=1.6e-08  Score=68.99  Aligned_cols=31  Identities=23%  Similarity=0.179  Sum_probs=25.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .....+| +++|+|+||||||||+++|.++..
T Consensus        55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            3445677 999999999999999999976654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.45  E-value=6.3e-07  Score=55.53  Aligned_cols=26  Identities=19%  Similarity=0.134  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+...|+|+|.+|+|||||++.+++.
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            44578999999999999999999854

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.45  E-value=9.5e-08  Score=58.85  Aligned_cols=25  Identities=24%  Similarity=0.218  Sum_probs=6.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ....|+|+|++|+|||||++.|++.
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEC-----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999876

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.45  E-value=4.1e-07  Score=56.37  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~~   82 (107)
                      ...|+|+|..|+|||||++.+++........  ....... ...... ..  ....++|+||....
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~   86 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYV--PTVFENY-VADIEV-DGKQVELALWDTAGQEDY   86 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTC
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcCC--CcccceE-EEEEEE-CCEEEEEEEEECCCcHHH
Confidence            3579999999999999999998754332110  0011111 111222 22  35788999997543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.45  E-value=2.2e-07  Score=65.93  Aligned_cols=65  Identities=26%  Similarity=0.360  Sum_probs=42.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--------------------ccCCCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFK--------------------ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~--------------------~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      +-++++|+|+.++|||||...|+-.....                    .-+..++.+.......+.| +.....++|||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence            34789999999999999999886221110                    0012234444444455666 78899999999


Q ss_pred             CCCCCC
Q 038901           78 GLFDLS   83 (107)
Q Consensus        78 ~~~~~~   83 (107)
                      |..++.
T Consensus       109 GHvDF~  114 (548)
T 3vqt_A          109 GHQDFS  114 (548)
T ss_dssp             CGGGCS
T ss_pred             CcHHHH
Confidence            999884

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.44  E-value=1.3e-07  Score=58.85  Aligned_cols=29  Identities=21%  Similarity=0.236  Sum_probs=24.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...++..++|+|++|||||||++.|+...
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34567899999999999999999998654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.44  E-value=4.1e-07  Score=55.66  Aligned_cols=28  Identities=14%  Similarity=0.143  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .....++|+|.+|+|||||++.+++...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~   48 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEI   48 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence            3446899999999999999999987653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.43  E-value=2.8e-07  Score=57.37  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...|+|+|+.|+|||||++.|++..
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC
Confidence            3579999999999999999999754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.43  E-value=2.2e-07  Score=57.90  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....++|+|++|+|||||++.|++..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.42  E-value=1.1e-07  Score=61.90  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=21.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccc
Q 038901           22 VVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ++|+||||+|||||+++|++...+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC
Confidence            999999999999999999987653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.42  E-value=8.1e-07  Score=57.88  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....|+|+|.+|+|||||+|.|+|...
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence            346899999999999999999998764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=1.7e-07  Score=58.04  Aligned_cols=30  Identities=27%  Similarity=0.384  Sum_probs=22.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .....++.+++|+|++||||||+.+.|+..
T Consensus        19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            344456789999999999999999999754

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.42  E-value=9.5e-08  Score=65.72  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=25.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKA   47 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~   47 (107)
                      .+.+++|+||||||||||+++|+++..+.+
T Consensus        25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            468999999999999999999998776543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.42  E-value=1.6e-07  Score=55.99  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+|+||||+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999986

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.42  E-value=1.5e-07  Score=63.66  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+ .++|+||||||||||+++|+
T Consensus        23 ~g-~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           23 SG-ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             SE-EEEEECCTTSSHHHHHHHHH
T ss_pred             CC-eEEEECCCCCCHHHHHHHHH
Confidence            45 68899999999999999998

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.42  E-value=1.1e-07  Score=69.96  Aligned_cols=27  Identities=19%  Similarity=0.133  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|++++|+||||+|||||+++|++..
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            567999999999999999999998864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.41  E-value=1.2e-07  Score=59.50  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.+++|+|++||||||+.+.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.41  E-value=6.1e-08  Score=59.36  Aligned_cols=24  Identities=13%  Similarity=0.181  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|+|+|+.|+|||||++.+++..
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            579999999999999999998643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.41  E-value=5.1e-07  Score=54.88  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=34.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      ...++|+|++|+|||||++.+++......- .. ...... ....... ......++|+||..
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~-t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~   66 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENY-TASFEIDTQRIELSLWDTSGSP   66 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC-CSEEEE-EEEEECSSCEEEEEEEEECCSG
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CC-ccceeE-EEEEEECCEEEEEEEEECCCCh
Confidence            467999999999999999999875432111 11 011111 1111211 12457889999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.41  E-value=8.2e-08  Score=63.30  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=27.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      .++.+++|+|+||+||||++..|++...+..|
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G  134 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH  134 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999987765444

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.40  E-value=3.5e-07  Score=63.41  Aligned_cols=63  Identities=25%  Similarity=0.336  Sum_probs=40.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .....++++|.+|+|||||+|.|++......+. ..+.+.........+ ......++||||+..
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~  255 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRK  255 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTT
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECCCCCc
Confidence            345789999999999999999999875433221 111222221222333 556789999999754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.40  E-value=2e-07  Score=57.91  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+++|+|++||||||+.+.|.++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            57999999999999999999873

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.40  E-value=8.8e-07  Score=55.23  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +...++|+|.+|+|||||++.+++..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~   58 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGA   58 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence            34689999999999999999999754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.39  E-value=6e-07  Score=60.88  Aligned_cols=51  Identities=14%  Similarity=0.264  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +++++|..++|||||++.|+     ..|     .+.........+ ......++||||..++
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~g-----iTi~~~~~~~~~-~~~~i~iiDtPGh~~f   73 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKG-----TSSDITMYNNDK-EGRNMVFVDAHSYPKT   73 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEE-----EESSSEEEEECS-SSSEEEEEECTTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCC-----EEEEeeEEEEec-CCeEEEEEECCChHHH
Confidence            89999999999999999998     122     222122222333 4567899999998765

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.39  E-value=6.1e-07  Score=55.36  Aligned_cols=25  Identities=16%  Similarity=0.209  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++|+|..|+|||||++.+++...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~~   50 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQF   50 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC
Confidence            5799999999999999999987543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.38  E-value=1.6e-07  Score=62.24  Aligned_cols=34  Identities=15%  Similarity=0.286  Sum_probs=28.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ...++.+++|+|+||+||||++..|++...+..+
T Consensus       100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~  133 (306)
T 1vma_A          100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK  133 (306)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence            3456789999999999999999999988765543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.38  E-value=1.1e-06  Score=53.62  Aligned_cols=26  Identities=42%  Similarity=0.578  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....|+|+|..|+|||||++.+++..
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            44689999999999999999998654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.38  E-value=9.9e-07  Score=55.09  Aligned_cols=59  Identities=17%  Similarity=0.055  Sum_probs=34.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEee-CCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      ....|+|+|..|+|||||++.+++......-    ..+.... ....... ......++|+||..
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   86 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSP   86 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence            4578999999999999999999865432111    1111111 1111111 23467788999854

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.37  E-value=1.5e-07  Score=69.07  Aligned_cols=30  Identities=17%  Similarity=0.051  Sum_probs=26.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-cccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA-FKAS   48 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~-~~~g   48 (107)
                      |++++|+||||+|||||+++|+++.. +..|
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G  606 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVG  606 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccC
Confidence            78999999999999999999998764 4445

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.37  E-value=1.8e-06  Score=58.04  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..|+|+|..|+|||||+|.|+|...
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~   56 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDF   56 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCc
Confidence            5799999999999999999999754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.36  E-value=1.5e-06  Score=53.04  Aligned_cols=62  Identities=24%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      +..+...++|+|.+|+|||||++.+++......- .....   .......+ ..  ....++|++|...
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-~~t~~---~~~~~~~~-~~~~~~l~i~Dt~G~~~   79 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGG---RFKKEIVV-DGQSYLLLIRDEGGPPE   79 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-CTTCE---EEEEEEEE-TTEEEEEEEEECSSSCC
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCCcc---eEEEEEEE-CCEEEEEEEEECCCChh
Confidence            3445578999999999999999888764432111 11111   11122222 23  3456789998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.36  E-value=5.2e-07  Score=55.79  Aligned_cols=60  Identities=22%  Similarity=0.222  Sum_probs=34.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ...|+|+|..|+|||||++.+++......-  ..............+ ..  ....++|+||...
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~   90 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER   90 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh
Confidence            367999999999999999999865432110  000111111122222 22  4678999999743

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.36  E-value=1.8e-06  Score=53.50  Aligned_cols=62  Identities=13%  Similarity=-0.024  Sum_probs=36.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFDL   82 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+|..|+|||||++.+++......-........   ....... ......++|+||....
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~   70 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAVDGQIVNLGLWDTAGQEDY   70 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE---EEEEECSSCEEEEEEECCCCCCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE---EEEEEECCEEEEEEEEECCCcHHH
Confidence            447899999999999999999986442211100000000   1111221 1246788999997543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.35  E-value=2.2e-07  Score=58.76  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=23.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..+|.+++|+|+||+|||||++.|++
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence            45679999999999999999999998

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.35  E-value=7.1e-07  Score=61.91  Aligned_cols=25  Identities=24%  Similarity=0.142  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +--+|+|+|+.++|||||||.|+|.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4478999999999999999999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.35  E-value=1.9e-07  Score=58.43  Aligned_cols=62  Identities=27%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh-CCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL-GRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ...+|+|+|..|+|||||++.++ +....... ...+.+.......... ......++|+||...
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~   76 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEK   76 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEE-TTTTEEEEEEEEEETT-EEEEEEEEEECSGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECC-EEEEEEEEeCCChHH
Confidence            34689999999999999999844 33221111 1111222111111110 134678889998643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.35  E-value=1.7e-06  Score=59.81  Aligned_cols=28  Identities=32%  Similarity=0.536  Sum_probs=23.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +.....+++++|..++|||||++.|++.
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~   40 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYL   40 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3445678999999999999999999654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.34  E-value=1.2e-06  Score=52.68  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +...++|+|.+|+|||||++.+++..
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34689999999999999999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.34  E-value=1.5e-06  Score=52.85  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ...++|+|.+|+|||||++.|.+....
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence            467999999999999999999876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=1.2e-06  Score=53.50  Aligned_cols=60  Identities=17%  Similarity=0.065  Sum_probs=35.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEee-eeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCE-MKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      ...++|+|+.|+|||||++.+++......-    ..+.... ........ .....++|+||....
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   79 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY   79 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSC----CCSSCCCEEEEEESSSCEEEEEEECCCCSSSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEECCEEEEEEEEECCCCcch
Confidence            368999999999999999999865322110    0111000 11122211 246778999997543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.34  E-value=2.7e-07  Score=65.16  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=39.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--ccC------------------CCCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFK--ASA------------------GSSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~--~g~------------------~~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      .-.+++|+|+.|+|||||++.|+......  .|.                  ...+.+.........+ ......++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence            34789999999999999999996221110  000                  0011122222233343 56788999999


Q ss_pred             CCCCC
Q 038901           78 GLFDL   82 (107)
Q Consensus        78 ~~~~~   82 (107)
                      |..++
T Consensus        91 G~~df   95 (528)
T 3tr5_A           91 GHADF   95 (528)
T ss_dssp             CSTTC
T ss_pred             CchhH
Confidence            98765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.34  E-value=1.3e-06  Score=58.27  Aligned_cols=58  Identities=16%  Similarity=0.130  Sum_probs=35.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...|+|+|.+|+|||||++.|++......     ..+.......... ......++||||....
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~  222 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI  222 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----
T ss_pred             cceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhH
Confidence            34799999999999999999987543211     1122222222333 5667889999986543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.34  E-value=8.4e-07  Score=55.17  Aligned_cols=58  Identities=16%  Similarity=0.070  Sum_probs=35.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeee-eeEEee-CCcEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEM-KTTVLK-DGQVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~-~~~~~~-~~~~~~v~d~p~~~   80 (107)
                      ...++|+|++|+|||||++.+++......-    ..+..... ...... ......++|+||..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   87 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSP   87 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence            467999999999999999999875432211    11111111 112221 12467889999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.33  E-value=2.3e-07  Score=57.49  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+++|+|++||||||+.+.|++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.33  E-value=3.9e-07  Score=55.13  Aligned_cols=59  Identities=22%  Similarity=0.233  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLF   80 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~   80 (107)
                      ...++|+|+.|+|||||++.+++......-  ..............+ ..  ....++|+||..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~   68 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE   68 (183)
T ss_dssp             EEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEE-TTEEEEEEEEEC----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEcCCCCh
Confidence            367999999999999999999865322110  001111111122222 22  467889999864

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.33  E-value=3.8e-07  Score=68.14  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=22.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHH
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSI   39 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l   39 (107)
                      ..+|++++|+||||+||||||++|
T Consensus       659 ~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          659 KDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHH
Confidence            346799999999999999999999

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.32  E-value=1.3e-06  Score=61.80  Aligned_cols=64  Identities=23%  Similarity=0.321  Sum_probs=38.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--ccCC------------------CCceeeEeeeeeEEeeCCcEEEEEeCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFK--ASAG------------------SSGVTTTCEMKTTVLKDGQVVNVIDTP   77 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~--~g~~------------------~~~~~~~~~~~~~~~~~~~~~~v~d~p   77 (107)
                      +..+++|+|+.|+|||||++.|+......  .|..                  ..+.+.........+ ......++|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence            34789999999999999999998542211  0000                  011111111122333 56788999999


Q ss_pred             CCCCC
Q 038901           78 GLFDL   82 (107)
Q Consensus        78 ~~~~~   82 (107)
                      |..++
T Consensus        91 G~~df   95 (529)
T 2h5e_A           91 GHEDF   95 (529)
T ss_dssp             CSTTC
T ss_pred             CChhH
Confidence            99765

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.32  E-value=3.1e-07  Score=57.25  Aligned_cols=27  Identities=11%  Similarity=-0.071  Sum_probs=24.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+|.+++|+|+||+|||||++.|++
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345679999999999999999999987

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.32  E-value=8.7e-07  Score=61.87  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..+++++|..++|||||++.|++.
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999999754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.32  E-value=6.5e-07  Score=53.94  Aligned_cols=26  Identities=19%  Similarity=0.056  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....++|+|+.|+|||||++.+++..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.31  E-value=9.5e-07  Score=62.70  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....|+|+|..|+|||||+|.|++...
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~   90 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEV   90 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcc
Confidence            346899999999999999999999764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.31  E-value=4.8e-07  Score=55.03  Aligned_cols=27  Identities=26%  Similarity=0.229  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|..++|+|++||||||+.+.|.+..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999998754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.31  E-value=1.6e-07  Score=62.59  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+||||+|||||+++|++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            579999999999999999999987

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.31  E-value=2.8e-07  Score=62.02  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=26.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+|.+++|+|+||||||||++.|++..
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44578999999999999999999999876

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.31  E-value=2.8e-06  Score=61.72  Aligned_cols=64  Identities=31%  Similarity=0.456  Sum_probs=37.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh---CCcccc----ccC---------CCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL---GRRAFK----ASA---------GSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~---g~~~~~----~g~---------~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .-.+++|+|+.|+|||||++.|+   +.....    .+.         .....+.........+ ......++||||..+
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d   89 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD   89 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence            44789999999999999999998   322110    000         0112222222233343 567889999999976


Q ss_pred             C
Q 038901           82 L   82 (107)
Q Consensus        82 ~   82 (107)
                      +
T Consensus        90 f   90 (691)
T 1dar_A           90 F   90 (691)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.31  E-value=3.2e-07  Score=62.37  Aligned_cols=29  Identities=17%  Similarity=0.209  Sum_probs=25.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+++.++|+||||+|||||+++|++..
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44567899999999999999999999753

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.30  E-value=2e-06  Score=62.58  Aligned_cols=65  Identities=32%  Similarity=0.473  Sum_probs=39.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC---Ccccc----ccC-C--------CCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILG---RRAFK----ASA-G--------SSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g---~~~~~----~g~-~--------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      ..-.+++|+|+.|+|||||++.|++   .....    .+. .        ..+.+.........+ ......++||||+.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~   86 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV   86 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence            3457899999999999999999983   32110    000 0        111222222223333 56788999999997


Q ss_pred             CC
Q 038901           81 DL   82 (107)
Q Consensus        81 ~~   82 (107)
                      ++
T Consensus        87 df   88 (693)
T 2xex_A           87 DF   88 (693)
T ss_dssp             SC
T ss_pred             ch
Confidence            65

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.30  E-value=3.2e-07  Score=62.02  Aligned_cols=27  Identities=15%  Similarity=0.090  Sum_probs=23.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ....++ +++|+||||+|||||+++|.+
T Consensus        22 ~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           22 LNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            344456 999999999999999999986

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.30  E-value=2.2e-06  Score=62.30  Aligned_cols=28  Identities=29%  Similarity=0.479  Sum_probs=24.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .+..|+|+|..|+|||||+|+|+|....
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~   95 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLL   95 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4578999999999999999999997643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.30  E-value=4.4e-07  Score=59.68  Aligned_cols=30  Identities=23%  Similarity=0.216  Sum_probs=26.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ..++.+|+|+|++|||||||++.|.+....
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            345689999999999999999999887754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.29  E-value=3.2e-07  Score=59.61  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=25.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+|.+++|+|+||+|||||++.|++..
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999998744

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.28  E-value=2.9e-07  Score=68.63  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+|++++|+|||||||||||++|++
T Consensus       669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          669 SEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            345679999999999999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.28  E-value=2.5e-07  Score=62.02  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=25.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++.+++|+|++|+|||||++.|++...
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999986543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.27  E-value=8.8e-08  Score=59.04  Aligned_cols=60  Identities=23%  Similarity=0.265  Sum_probs=35.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCC--cEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDG--QVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~v~d~p~~~~   81 (107)
                      ...|+|+|++|+|||||+|.|++........  ...+.........+ ..  ....++|+||...
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~   94 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQER   94 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHh
Confidence            3689999999999999999998754322110  01111111122222 22  3578889998643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.26  E-value=5.7e-07  Score=57.53  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=21.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcc
Q 038901           22 VVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++|+||||+|||||+++|++...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999998653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.26  E-value=4.5e-07  Score=60.21  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .++ ..+|+|+||||||||+++|..+.
T Consensus        23 ~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           23 SDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             CSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            345 89999999999999999998554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.26  E-value=9.9e-07  Score=53.91  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=25.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....++..++|+|++||||||+.+.|+....
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3445679999999999999999999986653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.25  E-value=1.5e-06  Score=62.39  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+...|+|+|..++|||||++.|++..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~  191 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDL  191 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhc
Confidence            445789999999999999999998763

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.24  E-value=2.6e-06  Score=53.45  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...|+|+|.+|+|||||+|.+++..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~   61 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVH   61 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3679999999999999999999743

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.24  E-value=3.2e-07  Score=69.08  Aligned_cols=26  Identities=27%  Similarity=0.241  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      |++++|+||||+|||||+++| |+...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~  814 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLAV  814 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHHH
Confidence            799999999999999999999 77543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.24  E-value=7.2e-07  Score=55.71  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+|+|+||+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            578999999999999999985

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.23  E-value=8.5e-07  Score=60.58  Aligned_cols=26  Identities=15%  Similarity=0.181  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ....+++++|+.++|||||++.|++.
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~   34 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYV   34 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence            44578999999999999999999873

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.23  E-value=7.9e-07  Score=59.45  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+|+||||||||||+.+|+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            578899999999999999884

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.23  E-value=7e-07  Score=55.27  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..+|+|+|++||||||+.+.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.23  E-value=7.5e-07  Score=57.80  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcc
Q 038901           22 VVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++|+||||+|||||+++|++...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999999998654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.22  E-value=8.9e-07  Score=53.94  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+..++|+|++||||||+.+.|+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            46889999999999999999997

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.22  E-value=6.4e-07  Score=59.67  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=29.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      .....++.+++|+|+||+||||++..|++......+
T Consensus        99 ~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~  134 (320)
T 1zu4_A           99 DFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY  134 (320)
T ss_dssp             CCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            334567799999999999999999999987765443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.21  E-value=7.3e-07  Score=57.50  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +++++|+|++||||||+.+.|++
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999999976

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.20  E-value=1.9e-06  Score=58.82  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..+++++|..++|||||++.|++.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~   26 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKI   26 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhCh
Confidence            467999999999999999999874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.18  E-value=1.1e-06  Score=53.73  Aligned_cols=25  Identities=12%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++|+|++|||||||++.|++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            6799999999999999999987643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.18  E-value=1.5e-06  Score=53.46  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++|+|.+|+|||||+|.+++.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            67999999999999999999863

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.18  E-value=9.5e-07  Score=60.94  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..+++++|..++|||||++.|+..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4478999999999999999999753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.18  E-value=3.3e-06  Score=59.06  Aligned_cols=62  Identities=15%  Similarity=0.283  Sum_probs=36.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc-----ccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      +..+++++|..++|||||++.|++.....     ......+.+.........+ ......++|+||..
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~   84 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA   84 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH
Confidence            34689999999999999999999865110     0011122333333333333 55688999999963

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.17  E-value=1.2e-06  Score=52.47  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..|+|+|++||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.17  E-value=5.8e-07  Score=63.30  Aligned_cols=32  Identities=16%  Similarity=0.192  Sum_probs=27.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      ...+|.+++|+|+||+|||||++.|++...+.
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            44578999999999999999999999887653

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.17  E-value=1.3e-05  Score=58.45  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .-.+++|+|+.|+|||||++.|+.
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            447899999999999999999964

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.16  E-value=1.6e-06  Score=52.48  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..|.|+|++||||||+.+.|...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999999764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.15  E-value=5.3e-06  Score=56.76  Aligned_cols=26  Identities=19%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..+++++|+.++|||||++.|+|..
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~   34 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVW   34 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCc
Confidence            34679999999999999999999764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.15  E-value=1.3e-06  Score=54.10  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      -|+|+||+|+|||||++.|+...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999997543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.15  E-value=6.6e-06  Score=56.20  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..+++++|..|+|||||+|.|++..
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence            34789999999999999999999854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.14  E-value=2.2e-06  Score=52.45  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=23.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++.+++|+|++||||||+.+.|...
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            345688999999999999999999754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.13  E-value=1.1e-05  Score=55.26  Aligned_cols=26  Identities=19%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..+++++|..++|||||++.|++..
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~   32 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVW   32 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Confidence            44789999999999999999999764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.11  E-value=9e-07  Score=58.27  Aligned_cols=31  Identities=23%  Similarity=0.226  Sum_probs=27.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ++++++++|+||+||||++..|++......+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~  127 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR  127 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            6799999999999999999999988765443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.11  E-value=2e-06  Score=52.35  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +..|+|.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.11  E-value=6.4e-06  Score=56.76  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...+++++|..++|||||++.|++.
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~   47 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHD   47 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhh
Confidence            3468999999999999999999754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.11  E-value=4.1e-07  Score=64.41  Aligned_cols=62  Identities=19%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..+++|+|+.++|||||++.|.+.......  ..+.+.........+.......++||||...+
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~--~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f   65 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAME--AGGITQHIGAFLVSLPSGEKITFLDTPGHAAF   65 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSS--SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccc--CCceeEEEeEEEEEeCCCCEEEEEECCChHHH
Confidence            367899999999999999999865432221  11122211112222223346788999997544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.10  E-value=2.7e-06  Score=51.92  Aligned_cols=24  Identities=13%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+..|.|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.10  E-value=2e-06  Score=51.40  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 038901           20 RTVVLLGRTGNGKSATGNSI   39 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l   39 (107)
                      .+|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.09  E-value=2.6e-06  Score=53.15  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++..++|+|++||||||+.+.|.....
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34578999999999999999999987654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.09  E-value=2.8e-06  Score=55.69  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=23.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +...+..+.|.|++||||||+.+.|+.
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344568999999999999999999964

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.09  E-value=2.9e-06  Score=58.10  Aligned_cols=31  Identities=16%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHH--hCCccc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSI--LGRRAF   45 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l--~g~~~~   45 (107)
                      ...+|.++.|+|+||+|||||+..|  .+..++
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~  206 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPL  206 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence            3456899999999999999999944  455544

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.07  E-value=3e-06  Score=53.75  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=22.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..++.+++|+|++||||||+.+.|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34568999999999999999999975

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.07  E-value=3e-06  Score=51.10  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..|.|+|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999986

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.07  E-value=3.8e-06  Score=53.33  Aligned_cols=30  Identities=20%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ...+..++|.|++||||||+++.|......
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            447799999999999999999999876543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.06  E-value=5.2e-06  Score=59.53  Aligned_cols=64  Identities=25%  Similarity=0.320  Sum_probs=32.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc----c---------CCCCceeeEeeeeeEEeeC----CcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKA----S---------AGSSGVTTTCEMKTTVLKD----GQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~----g---------~~~~~~~~~~~~~~~~~~~----~~~~~v~d~p~~~~   81 (107)
                      -.+++|+|+.++|||||++.|+.......    +         ....+.+.........|..    .....++||||..+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            36899999999999999999975321100    0         0011223222222333321    25778999999876


Q ss_pred             C
Q 038901           82 L   82 (107)
Q Consensus        82 ~   82 (107)
                      +
T Consensus        84 F   84 (599)
T 3cb4_D           84 F   84 (599)
T ss_dssp             G
T ss_pred             H
Confidence            5

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.06  E-value=2.8e-06  Score=54.63  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++|+|++|||||||.+.|+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            46899999999999999999754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.06  E-value=1.8e-05  Score=51.93  Aligned_cols=25  Identities=20%  Similarity=0.102  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...++++|.+|+|||||++.+++..
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~  179 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNA  179 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCC
Confidence            4689999999999999999998543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.05  E-value=2.9e-06  Score=52.17  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .|+|+|++||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999863

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.05  E-value=1e-05  Score=59.49  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..|+++|..++|||||+|+|+|...
T Consensus        52 p~I~vvG~~saGKSSllnaL~g~~~   76 (772)
T 3zvr_A           52 PQIAVVGGQSAGKSSVLENFVGRDF   76 (772)
T ss_dssp             SEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCc
Confidence            5799999999999999999999754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.05  E-value=3.5e-06  Score=52.65  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +.+|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999975

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.04  E-value=3.8e-06  Score=51.66  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..+|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3478999999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.04  E-value=4.2e-06  Score=51.86  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..+..|+|.|++||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.30  E-value=6.1e-07  Score=55.37  Aligned_cols=27  Identities=19%  Similarity=0.122  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+...++|+|.+|+|||||++.+++..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~   54 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
Confidence            345789999999999999999998643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.04  E-value=2.5e-06  Score=54.79  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=24.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....+..+.|+|++||||||+.+.|....
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34456899999999999999999997643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.04  E-value=9.3e-06  Score=58.23  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      -.+++|+|+.++|||||++.|+.
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~   28 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLE   28 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999975

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.04  E-value=3.8e-06  Score=51.78  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ++..|+|.|+.||||||+.+.|....
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.03  E-value=3.6e-06  Score=51.23  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...|.|+|++||||||+.+.|+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999964

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.03  E-value=2.2e-06  Score=61.31  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+|+|+|..++|||||++.|++
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999999964

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.03  E-value=1.2e-05  Score=50.70  Aligned_cols=22  Identities=23%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..|+|+|.+|+|||||++.++.
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCcCHHHHHHHHHh
Confidence            5799999999999999998874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.03  E-value=4.2e-06  Score=51.73  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ++..|+|.|++||||||+.+.|...
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.02  E-value=9.3e-06  Score=60.25  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      -..++|+|+.|+|||||++.|+..
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHh
Confidence            367999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.02  E-value=4.1e-06  Score=52.46  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .++..|+|+|++||||||+.+.|+.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.01  E-value=1.2e-06  Score=61.51  Aligned_cols=61  Identities=18%  Similarity=0.327  Sum_probs=37.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ..+++++|+.++|||||++.|.+..... +. ..+.+.........+ ......++||||...+
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~-~e-~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f   64 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVAS-GE-AGGITQHIGAYHVET-ENGMITFLDTPGHAAF   64 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSB-TT-BCCCCCCSSCCCCCT-TSSCCCEECCCTTTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCcc-cc-CCCeeEeEEEEEEEE-CCEEEEEEECCCcHHH
Confidence            4679999999999999999998643221 11 011111111122222 3456788999998654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.01  E-value=4.5e-06  Score=51.06  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ++..|+|+|++||||||+.+.|+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.01  E-value=3.3e-06  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +++|+|++||||||+.+.|+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.00  E-value=1.6e-05  Score=56.06  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+|+|+|.+|+|||||+|.+++..
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC
Confidence            44789999999999999999999864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.00  E-value=5.1e-06  Score=50.40  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+..|.|+|++||||||+.+.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            45679999999999999999997

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.00  E-value=1.1e-06  Score=65.70  Aligned_cols=28  Identities=29%  Similarity=0.315  Sum_probs=23.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+..+.|++++|+|+||||||||++.|+
T Consensus       644 sl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             eEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            3455678999999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.99  E-value=5.2e-06  Score=50.60  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +..|+|+|++||||||+.+.|+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998854

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.98  E-value=2.6e-06  Score=56.67  Aligned_cols=28  Identities=21%  Similarity=0.264  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC-Ccccccc
Q 038901           21 TVVLLGRTGNGKSATGNSILG-RRAFKAS   48 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g-~~~~~~g   48 (107)
                      .+.|.||+|+||||++++|++ +..+..|
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g   66 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVY   66 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence            399999999999999999998 5555444

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.98  E-value=2.3e-06  Score=60.62  Aligned_cols=31  Identities=26%  Similarity=0.244  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      ++..++|+||||+|||||+++|++...+..+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            5789999999999999999999987755433

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.98  E-value=4.8e-06  Score=50.68  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..|+|.|++||||||+.+.|....
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999997643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.98  E-value=8.3e-06  Score=50.32  Aligned_cols=27  Identities=19%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ......+|+|.|++||||||+.+.|+.
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344557899999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.98  E-value=5.5e-06  Score=51.36  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .++..|+|.|+.||||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999974

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.97  E-value=8.3e-07  Score=65.70  Aligned_cols=31  Identities=16%  Similarity=0.117  Sum_probs=25.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHH-HhCCc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNS-ILGRR   43 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~-l~g~~   43 (107)
                      .+..+.|++++|+|+||||||||++. |++..
T Consensus       517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          517 DVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             EEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             eEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            34456789999999999999999996 66543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.97  E-value=5.2e-06  Score=52.43  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+|..++|+|+||+|||||+..++
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            34567999999999999999966554

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.97  E-value=5.4e-06  Score=52.95  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 038901           19 ERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ..+++|.|++||||||+.+.|+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999997

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.97  E-value=1.6e-06  Score=53.86  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .|+|.|++||||||+++.|.....
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.96  E-value=6e-06  Score=50.31  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+++|+|++|||||||++.|+....
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            6799999999999999999987643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.95  E-value=2.7e-06  Score=59.13  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...++++|..++|||||++.|++.
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~   30 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYK   30 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999853

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.94  E-value=2.9e-06  Score=59.05  Aligned_cols=25  Identities=32%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+..+++++|..++|||||++.|+.
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHH
Confidence            3446899999999999999999863

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.93  E-value=9.1e-06  Score=58.62  Aligned_cols=62  Identities=26%  Similarity=0.406  Sum_probs=41.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCcccc----ccC---------CCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSIL---GRRAFK----ASA---------GSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~---g~~~~~----~g~---------~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ++|+|+|+-++|||||...|+   |.+...    .|.         ..++.+.........| +.....++||||..++
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence            579999999999999999885   333221    110         0112333333344455 5677899999999988

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.93  E-value=5e-05  Score=55.37  Aligned_cols=66  Identities=33%  Similarity=0.421  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccc-------ccc---------CCCCceeeEeeeeeEEee------CCcEEEEE
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAF-------KAS---------AGSSGVTTTCEMKTTVLK------DGQVVNVI   74 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~-------~~g---------~~~~~~~~~~~~~~~~~~------~~~~~~v~   74 (107)
                      .+-++++|+|+-++|||||...|+-....       ..|         +..++.+.........|.      ......++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            34578999999999999999988632211       011         122334444443444442      14688999


Q ss_pred             eCCCCCCC
Q 038901           75 DTPGLFDL   82 (107)
Q Consensus        75 d~p~~~~~   82 (107)
                      ||||..++
T Consensus        91 DTPGHvDF   98 (709)
T 4fn5_A           91 DTPGHVDF   98 (709)
T ss_dssp             CCCSCTTC
T ss_pred             eCCCCccc
Confidence            99999998

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.93  E-value=9.5e-06  Score=50.07  Aligned_cols=27  Identities=30%  Similarity=0.519  Sum_probs=22.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ....+..|+|+|++||||||+.+.|..
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344557899999999999999999864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.93  E-value=5.1e-06  Score=59.44  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKA   47 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~   47 (107)
                      .+..++|+||||+|||||+++|++...+..
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            346899999999999999999999886543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.92  E-value=7.1e-06  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      -..++|+|+.|+|||||++.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            368999999999999999999865

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.91  E-value=6.3e-06  Score=55.71  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      -..+|+|+||+||||++.+|.
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            578899999999999999986

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.90  E-value=7.8e-06  Score=51.46  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ++..|+|+|++||||||+.+.|+.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999973

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.90  E-value=8.4e-06  Score=49.94  Aligned_cols=24  Identities=17%  Similarity=0.520  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +.+|+|+|++||||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.89  E-value=7.7e-06  Score=51.28  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..|.|+|++||||||+.+.|+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.88  E-value=5.9e-06  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=16.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ++..|.|.|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999863

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.88  E-value=8.9e-06  Score=50.64  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999953

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.87  E-value=1.5e-05  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..+|+|.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.86  E-value=9.2e-06  Score=51.95  Aligned_cols=24  Identities=29%  Similarity=0.621  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+.|+||+|+|||||+++|++..
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHc
Confidence            458999999999999999998754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.86  E-value=1.1e-05  Score=60.32  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=20.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll   36 (107)
                      ....+.|++++|+|+||||||||+
T Consensus       604 sl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          604 DVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             EEEEESSSEEEEECSTTSSHHHHH
T ss_pred             ceEEcCCcEEEEEccCCCChhhhH
Confidence            344557899999999999999997

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.85  E-value=1.4e-05  Score=51.10  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ++.+|+|+|++||||||+.+.|+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999964

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.85  E-value=1.1e-05  Score=50.31  Aligned_cols=21  Identities=38%  Similarity=0.737  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999954

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.84  E-value=1.4e-05  Score=49.96  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..+++|+|..|+|||||++.++..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            478999999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.83  E-value=1.4e-05  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +..|.|+|++||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999999975

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.82  E-value=1e-05  Score=49.14  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.82  E-value=1.1e-05  Score=48.37  Aligned_cols=22  Identities=18%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+|+|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.82  E-value=1.3e-05  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      .++|.|+.||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.82  E-value=1.4e-05  Score=47.73  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.80  E-value=1.5e-05  Score=57.11  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+++|+|+.++|||||++.|++..
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~   29 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHhccc
Confidence            679999999999999999998653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.79  E-value=3.5e-05  Score=50.24  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+|+|.|++||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.79  E-value=1.6e-05  Score=49.00  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +++|.|++||||||+.+.|...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999663

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.78  E-value=6e-06  Score=54.44  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      +.+++++|++|+||||++..|++....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~  124 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK  124 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999999866543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.78  E-value=1.8e-05  Score=47.38  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..+++|.|..||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.77  E-value=9.4e-06  Score=56.01  Aligned_cols=30  Identities=23%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKA   47 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~   47 (107)
                      ++.+++++|++|+||||++..|++......
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g  126 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG  126 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            678999999999999999999998766543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.77  E-value=2.8e-05  Score=53.82  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++.+++++|++|+||||++..|+....
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            568999999999999999999985443

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.76  E-value=1.7e-05  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +..|+|+|++||||||+.+.|+.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999954

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.75  E-value=2.2e-05  Score=50.23  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.75  E-value=2.1e-05  Score=51.61  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+..+.|.||+|+|||||+++|++..
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            345789999999999999999998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.75  E-value=3.2e-05  Score=48.86  Aligned_cols=28  Identities=18%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...+.++|.|+||+||||+|..+.|+..
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3345578999999999999999988644

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.74  E-value=2.4e-05  Score=53.63  Aligned_cols=31  Identities=16%  Similarity=0.170  Sum_probs=26.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+..+|++++|+|++|+|||||++.|++..
T Consensus       168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            3466789999999999999999999998754

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.74  E-value=2.1e-05  Score=49.51  Aligned_cols=21  Identities=29%  Similarity=0.700  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      .|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.74  E-value=2.1e-05  Score=55.32  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcc
Q 038901           22 VVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +.|+||||+|||||+++|++...
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999998653

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.74  E-value=4e-06  Score=58.99  Aligned_cols=27  Identities=26%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .-.+| ..+|+|+||||||||+.+|...
T Consensus        57 ~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           57 ELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             ECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            34445 8899999999999999999544

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.73  E-value=1.8e-05  Score=53.64  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .+..++|+|++|+||||+++.|+.....
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~   61 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYM   61 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4577999999999999999999876544

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.73  E-value=2e-05  Score=49.09  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.73  E-value=2.8e-05  Score=52.28  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...+++|+|++|+|||||++.|+..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.73  E-value=2.3e-05  Score=48.98  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999976543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.73  E-value=1.2e-05  Score=52.85  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..+|+|.|++||||||+.+.|...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998753

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.72  E-value=5.6e-05  Score=57.98  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+..+|+++|..++|||||++.|++.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence            44578999999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.72  E-value=2.8e-05  Score=49.12  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+..|.|+|+.||||||+.+.|+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            447899999999999999999964

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.72  E-value=2.6e-05  Score=48.06  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..+.|.|++|+|||||+++|+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6799999999999999999986543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.71  E-value=3.5e-05  Score=51.69  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +..++|+||+|+|||||...|+....
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCC
Confidence            46899999999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.70  E-value=3.1e-05  Score=46.53  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.|.|++|+|||||++.++...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999997654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.69  E-value=2.7e-05  Score=48.21  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...+++|+|..||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.69  E-value=1.7e-05  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcc
Q 038901           22 VVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +.|.||+|+||||+++++++...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999988753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.68  E-value=2.9e-05  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..|.|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999975

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.68  E-value=2.9e-05  Score=52.43  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..+|.++.|.||+|+|||||+..++....
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34679999999999999999999886543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.68  E-value=3.9e-05  Score=50.09  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +...+.|+||+|+||||++++|+....
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            346799999999999999999987654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.67  E-value=3.4e-05  Score=50.21  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.|.||+|+|||||+++|++..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.67  E-value=4.7e-05  Score=52.28  Aligned_cols=26  Identities=31%  Similarity=0.280  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .....|.|+|++||||||+.+.|+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999999754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.65  E-value=4.4e-05  Score=47.77  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+..++|+|++|+|||||...|+...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            35779999999999999999997653

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.64  E-value=3.6e-05  Score=49.18  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=23.7

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..+.....++..|+|.|++||||||+++.|.....
T Consensus        18 ~~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           18 LYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             --------CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             cccccCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            33444455678999999999999999999976543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.64  E-value=0.00014  Score=50.63  Aligned_cols=25  Identities=24%  Similarity=0.177  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+-.+|+|+|+.++|||+|+|.|++
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~   89 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHHH
Confidence            3447899999999999999998763

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.63  E-value=5.6e-05  Score=51.10  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+|++|+||||+.++|++..
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh
Confidence            459999999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.63  E-value=3.3e-05  Score=51.45  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+..+.|.|++|+|||||++.+++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            445789999999999999999998754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.62  E-value=7.2e-05  Score=47.98  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.9

Q ss_pred             CceEEEEEcCC---------CCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRT---------GNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~n---------G~GKSTll~~l~g   41 (107)
                      ....|+|+|.+         |+|||||++.+++
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            34689999999         9999999999998

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.62  E-value=4.1e-05  Score=48.43  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=19.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .++.++++|++||||||++..++
T Consensus        75 ~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           75 QNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCcHHhHHHHH
Confidence            35789999999999999877654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.62  E-value=4.7e-05  Score=50.73  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...++|+||+|||||||...|+....
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            36789999999999999999986543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.61  E-value=0.00012  Score=48.93  Aligned_cols=59  Identities=17%  Similarity=0.172  Sum_probs=34.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ++.|+|.+|+|||||++.+.+...+... .....+........  .......++||+|...+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~-~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf   59 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDT-LYLESTSNPSLEHF--STLIDLAVMELPGQLNY   59 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGG-TTCCCCCSCCCEEE--CSSSCEEEEECCSCSSS
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCcc-ceecCeeeeeeEEE--ccEEEEEEEECCCchhc
Confidence            3789999999999999988765433211 01111111111111  12356788899887654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.61  E-value=4.1e-05  Score=51.43  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..|+|+||+|||||||.+.|+...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            589999999999999999987654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.60  E-value=4.6e-05  Score=47.72  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ++.|+||+||||+|..+.|+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999988754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.60  E-value=4.9e-05  Score=50.85  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+.|.||+|+|||||++.+++...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            799999999999999999987653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.58  E-value=5.2e-05  Score=50.60  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+||+|||||||.+.|+...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            579999999999999999998654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.58  E-value=6e-05  Score=47.38  Aligned_cols=26  Identities=31%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +|..|+|.|+.||||||+++.|....
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999997544

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.57  E-value=4e-05  Score=46.01  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.|.|++|+|||||++.++...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999987654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.56  E-value=7.3e-05  Score=49.68  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...++|+||+|||||||...|+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4689999999999999999997544

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.55  E-value=6.4e-05  Score=47.67  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..|+|.|..||||||+++.|....
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4789999999999999999998654

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.55  E-value=5.7e-05  Score=52.75  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +..+|.+++|+|++|+|||||++.|+....
T Consensus       147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             CEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             hhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            334678999999999999999998876543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.54  E-value=6.6e-05  Score=48.50  Aligned_cols=26  Identities=19%  Similarity=0.431  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....+.|.||+|+|||||+++|+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            34679999999999999999998654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.53  E-value=5.2e-05  Score=48.19  Aligned_cols=28  Identities=18%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+|..|+|.|++||||||+++.|.....
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999976543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.51  E-value=0.00011  Score=51.70  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 038901           17 NGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+..+|+|+|++|+||||+++.|+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999999

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.51  E-value=5.6e-05  Score=49.86  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..+.|.||+|+|||||+++|+...
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999999998755

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.50  E-value=6.3e-05  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+++|+|++||||||+.+.|...
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999998653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.49  E-value=9.1e-05  Score=47.12  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....+.|.||+|+||||++++|+...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            33568999999999999999997643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.49  E-value=0.00013  Score=50.69  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..+++++|++|+||||++..|+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~  123 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARY  123 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHH
Confidence            4689999999999999999999843

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.49  E-value=7.2e-05  Score=50.33  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..+|.++.|.|++|+|||||+..++.
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~   83 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVA   83 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34679999999999999999877764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.49  E-value=4.7e-05  Score=48.95  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .++..|+|.|..||||||+.+.|....
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            456889999999999999999987654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.48  E-value=8.5e-05  Score=46.72  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +|..|.|-|+.||||||+++.|.....
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            368899999999999999999976543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.48  E-value=7.6e-05  Score=51.60  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+++|+|++|+||||+++.|++..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.46  E-value=5.4e-05  Score=52.95  Aligned_cols=24  Identities=25%  Similarity=0.614  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .-+.|+||+|+|||||+++|++..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            348899999999999999998754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.46  E-value=0.00011  Score=46.52  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...+..|+|.|..||||||+++.|.....
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34678999999999999999999976554

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.45  E-value=9.2e-05  Score=50.82  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++|+||+|+|||||...|+..
T Consensus         3 ~~i~i~GptgsGKttla~~La~~   25 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQK   25 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHH
Confidence            67899999999999999988754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.45  E-value=9.2e-05  Score=45.94  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+.|.|++|+|||||++.++...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999997644

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.44  E-value=0.00011  Score=46.35  Aligned_cols=27  Identities=15%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +|..|.|-|+.||||||+++.|.....
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            578999999999999999999976554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.44  E-value=0.00011  Score=43.17  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+.|.|++|+|||++.++|....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            568999999999999999998654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.42  E-value=0.00013  Score=47.61  Aligned_cols=27  Identities=19%  Similarity=0.306  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+..+.|.||+|+|||++.++|+...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            344679999999999999999887654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.40  E-value=0.00012  Score=48.72  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .|.-++|+|++|+||||+...|..
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            457899999999999999999986

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.38  E-value=0.00022  Score=46.66  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.|.||+|+|||+|.++|+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567888999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-10
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-06
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	2e-05
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	0.002
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.003

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 52.9 bits (126), Expect = 3e-10
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NSI+G R    S   S       +  +  + G  +N+IDTPG
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS--EGPRPVMVSRSRAGFTLNIIDTPG 89

Query: 79  LFDLSAGSEFVGKEIVKCL 97
           L +    ++     I   L
Sbjct: 90  LIEGGYINDMALNIIKSFL 108

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVT-TTCEMKTTVLKDGQVVNVI 74
            +    V + G TG+GKS+  N++ G    +  A  +GV   T E       +   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 75  DTPGLFD 81
           D PG+  
Sbjct: 113 DLPGIGS 119

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.8 bits (94), Expect = 6e-06
 Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
           V L+G    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIH 105
            ++  + +G E ++ +   +  ++
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLY 85

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 21  TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+G    GKS   + +   +     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIH 105
           + +     +G + ++ +   +  +H
Sbjct: 61  EGAHQGVGLGHQFLRHIERTRVIVH 85

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.0 bits (77), Expect = 0.002
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 22  VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
            +++G    GKS   N +  +   K                  +K G+ + ++DTPG+  
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKNIAKTGD-----RPGITTSQQWVKVGKELELLDTPGILW 169

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIH 105
                E VG  +    G  KD I 
Sbjct: 170 PKFEDELVGLRLAVT-GAIKDSII 192

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD 81
          +V++G+   GKS   N +L     +A       TT   +   ++  G +  ++DT G+  
Sbjct: 3  MVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 82 LSAG 85
           +  
Sbjct: 61 ETND 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.7
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.69
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.69
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.68
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.66
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.64
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.64
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.63
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.63
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.62
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.61
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.59
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.59
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.58
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.58
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.56
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.53
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.52
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.46
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.28
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.25
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.18
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.17
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.17
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.12
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.09
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.09
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.01
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.0
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.99
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.98
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.95
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.92
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.78
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.71
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.69
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.69
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.64
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.6
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.57
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.57
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.56
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.55
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.55
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.5
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.49
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.49
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.47
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.47
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.45
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.45
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.45
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.43
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.42
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.41
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.41
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.41
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.4
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.4
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.4
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.39
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.38
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.38
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.38
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.37
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.36
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.35
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.34
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.34
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.31
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.3
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.29
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.29
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.29
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.28
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.27
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.26
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.25
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.25
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.24
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.23
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.22
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.22
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.21
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.21
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.21
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.21
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.21
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.21
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.2
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.2
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.19
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.18
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.17
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.15
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.15
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.15
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.13
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.13
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	98.13
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.12
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.1
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.1
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.1
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.1
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.09
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.08
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.07
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.06
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.06
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.06
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.04
d1okkd2	207	GTPase domain of the signal recognition particle r	98.04
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.04
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.03
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.02
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.02
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.01
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.01
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.99
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.99
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.99
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.96
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.94
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.94
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.92
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.89
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.89
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.85
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.84
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.84
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.83
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.82
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.8
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.77
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.76
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.74
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.72
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.72
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.68
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.68
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.67
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.66
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.66
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.65
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.64
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.64
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.63
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.61
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.61
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.61
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.6
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.58
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.57
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.55
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.53
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.52
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.51
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.47
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.46
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.46
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.44
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.43
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.42
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.4
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.38
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.38
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.36
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.35
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.34
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.3
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.29
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.28
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.23
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.21
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.18
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.18
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.17
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.12
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.12
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.11
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.1
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.07
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.06
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.05
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.04
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.01
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.0
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.99
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.98
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.91
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.78
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.68
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.62
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.62
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.59
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.37
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.35
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.34
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.31
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.27
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.25
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.24
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.23
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.1
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.08
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.04
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.97
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.96
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.87
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.87
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.84
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.69
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	95.68
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.6
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.54
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.01
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.56
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.49
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.46
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.2
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.2
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.94
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.8
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.56
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.44
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.43
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	93.43
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.16
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.14
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.75
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.26
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.9
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.32
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.31
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.81
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	90.67
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.58
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.14
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.66
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	87.45
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	86.96
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	86.89
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	85.92
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	85.72
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	85.07
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	85.0
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	84.51
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	84.37
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	84.26
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	84.09
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	83.98
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	83.13
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	82.95
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	82.57

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.2e-18  Score=108.55  Aligned_cols=79  Identities=18%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+...........   ..++.+++++|.|.+++.     +++.+
T Consensus        20 sl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----~tv~e   91 (232)
T d2awna2          20 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP---PAERGVGMVFQSYALYPH-----LSVAE   91 (232)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC---GGGTCEEEECSSCCC-------------
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc---hhhceeeeeccccccccc-----hhHHH
Confidence            3445678999999999999999999999999999996544443322211   124679999999999887     77777


Q ss_pred             HHHHhhc
Q 038901           93 IVKCLGM   99 (107)
Q Consensus        93 ~~~~~~~   99 (107)
                      ++.+...
T Consensus        92 ni~~~~~   98 (232)
T d2awna2          92 NMSFGLK   98 (232)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            7766544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=3.3e-18  Score=108.14  Aligned_cols=80  Identities=19%  Similarity=0.114  Sum_probs=55.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+||||||||||+++|+|+..+++|.+...+.......   ..++.+++++|.|.+++.     +++.
T Consensus        25 vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltv~   96 (239)
T d1v43a3          25 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP---PKDRNISMVFQSYAVWPH-----MTVY   96 (239)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---GGGGTEEEEEC------C-----CCHH
T ss_pred             eeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC---cccceEEEEeechhhccc-----chHH
Confidence            34556778999999999999999999999999999996544443322211   124579999999999987     7777


Q ss_pred             HHHHHhhc
Q 038901           92 EIVKCLGM   99 (107)
Q Consensus        92 ~~~~~~~~   99 (107)
                      +++.+...
T Consensus        97 enl~~~~~  104 (239)
T d1v43a3          97 ENIAFPLK  104 (239)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHHH
Confidence            77766543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.69  E-value=9.6e-18  Score=106.10  Aligned_cols=83  Identities=17%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee---EEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      ....++|++++|+||||||||||+++|+|+..+++|.+...+........   ....++.+++++|.|.+++.     ++
T Consensus        23 sl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~-----lt   97 (240)
T d1g2912          23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH-----MT   97 (240)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT-----SC
T ss_pred             eeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcch-----hh
Confidence            34556789999999999999999999999999999966544443322221   11124679999999999987     77


Q ss_pred             HHHHHHHhhcc
Q 038901           90 GKEIVKCLGMA  100 (107)
Q Consensus        90 ~~~~~~~~~~~  100 (107)
                      +.+++.+....
T Consensus        98 V~eni~~~~~~  108 (240)
T d1g2912          98 VYDNIAFPLKL  108 (240)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHhhhhhHHH
Confidence            77777665443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=9.7e-18  Score=106.12  Aligned_cols=84  Identities=14%  Similarity=0.039  Sum_probs=62.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeee--EEeeCCcEEEEEeCCCCCCCCCCchH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEF   88 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~v~d~p~~~~~~~~~~~   88 (107)
                      ......++|++++|+||||||||||+++|+|+..+++|.+............  ....++++++++|.|.+++.     +
T Consensus        23 ~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~-----l   97 (242)
T d1oxxk2          23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN-----L   97 (242)
T ss_dssp             EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT-----S
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccc-----c
Confidence            4445667789999999999999999999999999999965544443322211  11124579999999999887     7


Q ss_pred             HHHHHHHHhhc
Q 038901           89 VGKEIVKCLGM   99 (107)
Q Consensus        89 ~~~~~~~~~~~   99 (107)
                      ++.+++.+...
T Consensus        98 tv~eni~~~l~  108 (242)
T d1oxxk2          98 TAFENIAFPLT  108 (242)
T ss_dssp             CHHHHHHGGGT
T ss_pred             cHHHHhhhhhH
Confidence            88888876544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.66  E-value=5.2e-18  Score=106.65  Aligned_cols=79  Identities=16%  Similarity=0.100  Sum_probs=60.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+++|+|+..+++|.+...+........   .++.+++++|.+.+++.     +++.+
T Consensus        20 s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~---~~r~ig~v~Q~~~l~~~-----~tV~e   91 (229)
T d3d31a2          20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP---EKHDIAFVYQNYSLFPH-----MNVKK   91 (229)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH---HHHTCEEECTTCCCCTT-----SCHHH
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch---hHhcceeeccccccCcc-----ccHHH
Confidence            34556889999999999999999999999999999965544433322121   23568999999999987     78888


Q ss_pred             HHHHhhc
Q 038901           93 IVKCLGM   99 (107)
Q Consensus        93 ~~~~~~~   99 (107)
                      ++.+...
T Consensus        92 nl~~~~~   98 (229)
T d3d31a2          92 NLEFGMR   98 (229)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.64  E-value=1.5e-17  Score=105.42  Aligned_cols=82  Identities=16%  Similarity=0.078  Sum_probs=59.1

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHH
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~   91 (107)
                      ......+|++++|+||||||||||+|+|+|+..+++|.+...+............+..+++++|.+.+++.     +++.
T Consensus        25 vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~-----ltv~   99 (240)
T d1ji0a_          25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE-----LTVY   99 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT-----SBHH
T ss_pred             eeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCc-----ccHH
Confidence            34456678999999999999999999999999999996554443322211111112348899999999877     7788


Q ss_pred             HHHHHhh
Q 038901           92 EIVKCLG   98 (107)
Q Consensus        92 ~~~~~~~   98 (107)
                      +++.+..
T Consensus       100 en~~~~~  106 (240)
T d1ji0a_         100 ENLMMGA  106 (240)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHH
Confidence            8776544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=1.4e-17  Score=104.79  Aligned_cols=84  Identities=17%  Similarity=0.078  Sum_probs=60.0

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE---EeeCCcEEEEEeCCCCCCCCCCc
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      ........+|++++|+||||||||||+++|+|+..|++|.+...+.........   .+.++.+++++|.|.+++.    
T Consensus        22 ~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~----   97 (230)
T d1l2ta_          22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL----   97 (230)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT----
T ss_pred             eceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcC----
Confidence            334456678899999999999999999999999999999655444332221111   1112468999999998877    


Q ss_pred             hHHHHHHHHHhh
Q 038901           87 EFVGKEIVKCLG   98 (107)
Q Consensus        87 ~~~~~~~~~~~~   98 (107)
                       +++.+++.+..
T Consensus        98 -~tv~eni~~~~  108 (230)
T d1l2ta_          98 -LTALENVELPL  108 (230)
T ss_dssp             -SCHHHHHHHHH
T ss_pred             -ccHHHHHhHHH
Confidence             67777766543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.63  E-value=2.2e-17  Score=104.32  Aligned_cols=71  Identities=20%  Similarity=0.068  Sum_probs=55.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHHHh
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~~~   97 (107)
                      +++++|+||||||||||+++|+|+..|++|.+...+.......   ..++.+++++|.+.+++.     +++.|++.+.
T Consensus        24 ~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~---~~~r~ig~v~Q~~~l~~~-----ltV~enl~~~   94 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP---PERRGIGFVPQDYALFPH-----LSVYRNIAYG   94 (240)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---TTTSCCBCCCSSCCCCTT-----SCHHHHHHTT
T ss_pred             CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCC---HHHcCceeeccchhhccc-----chhhHhhhhh
Confidence            3689999999999999999999999999996555444332222   124678999999999887     7777777653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.3e-17  Score=104.33  Aligned_cols=87  Identities=9%  Similarity=-0.105  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCCCCCc
Q 038901            9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGS   86 (107)
Q Consensus         9 ~~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~~~~~   86 (107)
                      .........+|++++|+||||||||||+++|+|+..+++|.+...+..........  ..++.+++|+|.|.+++.    
T Consensus        21 l~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~----   96 (240)
T d3dhwc1          21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS----   96 (240)
T ss_dssp             EEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT----
T ss_pred             eeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCC----
Confidence            33445566788999999999999999999999999999996554443322111100  012469999999998877    


Q ss_pred             hHHHHHHHHHhhcc
Q 038901           87 EFVGKEIVKCLGMA  100 (107)
Q Consensus        87 ~~~~~~~~~~~~~~  100 (107)
                       +++.+++.+....
T Consensus        97 -~tv~eni~~~l~~  109 (240)
T d3dhwc1          97 -RTVFGNVALPLEL  109 (240)
T ss_dssp             -SBHHHHHHHHHHT
T ss_pred             -ccHHHHHHHHHHH
Confidence             7777777665443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=3.5e-17  Score=103.57  Aligned_cols=82  Identities=13%  Similarity=0.051  Sum_probs=60.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHH
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~   92 (107)
                      .....+|++++|+||||||||||+|+|+|+..|++|.+...+....... .. .+...++++|.+++++.     ++..+
T Consensus        22 s~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~-~~-~~~~i~~vpq~~~~~~~-----ltv~e   94 (238)
T d1vpla_          22 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HE-VRKLISYLPEEAGAYRN-----MQGIE   94 (238)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-HH-HHTTEEEECTTCCCCTT-----SBHHH
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccCh-HH-HHhhEeEeeeccccCCC-----ccHHH
Confidence            3455678999999999999999999999999999986543332211111 11 24678999999999887     77777


Q ss_pred             HHHHhhccC
Q 038901           93 IVKCLGMAK  101 (107)
Q Consensus        93 ~~~~~~~~~  101 (107)
                      ++.+...++
T Consensus        95 ~l~~~~~~~  103 (238)
T d1vpla_          95 YLRFVAGFY  103 (238)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            776665443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.61  E-value=5.4e-17  Score=102.92  Aligned_cols=69  Identities=12%  Similarity=0.028  Sum_probs=53.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+||||||||||+++|+|+..|+.|.+..+...........+ ++.+++|+|.|.+++.
T Consensus        22 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~~v~Q~~~lf~~   90 (242)
T d1mv5a_          22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW-RSQIGFVSQDSAIMAG   90 (242)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCC-TTTCCEECCSSCCCCE
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHH-HhheEEEccccccCCc
Confidence            34556789999999999999999999999999999976555544333332232 5778999999988753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.59  E-value=2e-17  Score=105.64  Aligned_cols=82  Identities=17%  Similarity=0.085  Sum_probs=59.0

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        10 ~~~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      ........+|++++|+||||||||||+++|+|+..+++|.+...+............+..+++++|.|.+++.     ++
T Consensus        21 ~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~-----lt   95 (254)
T d1g6ha_          21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE-----MT   95 (254)
T ss_dssp             EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG-----SB
T ss_pred             cceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCC-----Ce
Confidence            3445666788999999999999999999999999999986554444322222111112348899999988765     67


Q ss_pred             HHHHHHH
Q 038901           90 GKEIVKC   96 (107)
Q Consensus        90 ~~~~~~~   96 (107)
                      +.+++.+
T Consensus        96 v~enl~~  102 (254)
T d1g6ha_          96 VLENLLI  102 (254)
T ss_dssp             HHHHHHG
T ss_pred             eeeeeee
Confidence            7777654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8e-17  Score=102.62  Aligned_cols=69  Identities=17%  Similarity=0.108  Sum_probs=52.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|+.++|+|+||||||||+++|+|+..|..|.+..++.......... .++.+++++|.|.+++.
T Consensus        34 sl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~  102 (251)
T d1jj7a_          34 TFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY-LHRQVAAVGQEPQVFGR  102 (251)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH-HHHHEEEECSSCCCCSS
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHH-HHHHhhhccccccccCc
Confidence            3455788999999999999999999999999999986554444332222222 24679999999988754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.58  E-value=1.8e-16  Score=101.27  Aligned_cols=80  Identities=15%  Similarity=0.058  Sum_probs=56.9

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeE------------EeeCCcEEEEEeCCCC
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTT------------VLKDGQVVNVIDTPGL   79 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~v~d~p~~   79 (107)
                      ......+|++++|+|+||||||||+++|+|+..+++|.+...+.........            ...++++++++|.|.+
T Consensus        21 vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l  100 (258)
T d1b0ua_          21 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  100 (258)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred             eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhh
Confidence            3445567899999999999999999999999999998654433322111100            0113568999999999


Q ss_pred             CCCCCCchHHHHHHHHH
Q 038901           80 FDLSAGSEFVGKEIVKC   96 (107)
Q Consensus        80 ~~~~~~~~~~~~~~~~~   96 (107)
                      ++.     +++.+++.+
T Consensus       101 ~~~-----~tv~env~~  112 (258)
T d1b0ua_         101 WSH-----MTVLENVME  112 (258)
T ss_dssp             CTT-----SCHHHHHHH
T ss_pred             ccc-----hhcchhhhh
Confidence            876     666666554

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.58  E-value=3e-16  Score=97.00  Aligned_cols=76  Identities=11%  Similarity=-0.024  Sum_probs=55.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~   94 (107)
                      ...+|++++|+||||||||||+++|+|+..|+.|.+...+....      ..+...+++++.+.++..     .+.++++
T Consensus        23 ~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~------~~~~~i~~~~~~~~~~~~-----~t~~~~l   91 (200)
T d1sgwa_          23 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------KVKGKIFFLPEEIIVPRK-----ISVEDYL   91 (200)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------GGGGGEEEECSSCCCCTT-----SBHHHHH
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh------HhcCcEEEEeecccCCCC-----cCHHHHH
Confidence            44578999999999999999999999999999986543332211      124568888888887765     5666776


Q ss_pred             HHhhccC
Q 038901           95 KCLGMAK  101 (107)
Q Consensus        95 ~~~~~~~  101 (107)
                      .+....+
T Consensus        92 ~~~~~~~   98 (200)
T d1sgwa_          92 KAVASLY   98 (200)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            6655443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=7.8e-17  Score=102.09  Aligned_cols=68  Identities=16%  Similarity=0.061  Sum_probs=51.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ...++|+.++|+|+||||||||+++|+|+..+..|.+...+.......... .++.+++++|.|.+++.
T Consensus        24 l~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~-lr~~i~~v~Q~~~lf~~   91 (241)
T d2pmka1          24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNW-LRRQVGVVLQDNVLLNR   91 (241)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHH-HHHHEEEECSSCCCTTS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhh-hhceEEEEecccccCCc
Confidence            345678999999999999999999999999999886554443332222212 24679999999988764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.53  E-value=2.5e-16  Score=100.46  Aligned_cols=69  Identities=20%  Similarity=0.074  Sum_probs=52.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ....++|++++|+|+||||||||+++|+|+..+..|.+.............. .++.+++++|.|.+++.
T Consensus        38 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~-lr~~i~~v~Q~~~lf~~  106 (255)
T d2hyda1          38 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS-LRNQIGLVQQDNILFSD  106 (255)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH-HHHTEEEECSSCCCCSS
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH-hhheeeeeeccccCCCC
Confidence            3455678999999999999999999999999999986554444332222222 24679999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.52  E-value=6e-16  Score=98.61  Aligned_cols=69  Identities=25%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+|+||||||||+++|+|+..+..|.+..............+ +..+++++|.|.++..
T Consensus        35 sl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~~v~Q~~~l~~~  103 (253)
T d3b60a1          35 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL-RNQVALVSQNVHLFND  103 (253)
T ss_dssp             EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH-HHTEEEECSSCCCCSS
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh-hheEEEEeeccccCCc
Confidence            34556789999999999999999999999999998865544433222222222 4568999999988864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.8e-14  Score=92.99  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      .....+|++++|+||||||||||+++|+|+..++.|.+.              ...++.|++|.|.+++.
T Consensus        56 sl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~--------------~~g~i~~v~Q~~~l~~~  111 (281)
T d1r0wa_          56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK--------------HSGRVSFCSQFSWIMPG  111 (281)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE--------------CCSCEEEECSSCCCCSE
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEE--------------ECCEEEEEeccccccCc
Confidence            344567899999999999999999999999999887422              13467888898887753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.40  E-value=5.1e-13  Score=85.02  Aligned_cols=76  Identities=30%  Similarity=0.389  Sum_probs=52.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHHHHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~~~~~~~   95 (107)
                      ....|+|+|.+|+|||||+|+|+|...+..+. ..+.|.......... ......++||||+.+.....+........
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHH
Confidence            34789999999999999999999987765442 233444444343343 67789999999998765444444444433

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=1.9e-12  Score=80.83  Aligned_cols=64  Identities=27%  Similarity=0.281  Sum_probs=40.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCC----CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG----SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ++++.+++|+||+|||||+|.|.+......|.+    ..+.++........+  ..-++++||||+-+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l--~~gg~iiDTPG~r~~~  161 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF--DFGGYVVDTPGFANLE  161 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC--TTSCEEESSCSSTTCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEE--CCCcEEEeCCcccccc
Confidence            368899999999999999999998765544422    223333333333333  3357999999997654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.7e-13  Score=85.15  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccC
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASA   49 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~   49 (107)
                      .....+|++++|+||||||||||+++|+|+.+ ..|.
T Consensus        19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~~G~   54 (231)
T d1l7vc_          19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGS   54 (231)
T ss_dssp             EEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-CSSE
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CceE
Confidence            34556889999999999999999999999864 5553

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=2.3e-12  Score=77.74  Aligned_cols=58  Identities=24%  Similarity=0.225  Sum_probs=39.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      .|+|+|++|+|||||+|.|++.......  ....+.........+.....+.++|+||+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~--~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~   60 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLPGLI   60 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceec--CCCceEeeeeceeEecCCcEEEEecCCCcc
Confidence            4899999999999999999986643322  223333333333333345677889999974

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=5.7e-12  Score=78.86  Aligned_cols=63  Identities=30%  Similarity=0.342  Sum_probs=36.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCC----CceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ++.+.+|+|+||+|||||+|+|++......|.+.    .+.++......... .  -++++||||+-+..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~-~--gg~iiDTPG~r~~~  162 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT-S--GGLVADTPGFSSLE  162 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE-T--TEEEESSCSCSSCC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEec-C--CCEEEECCcccccc
Confidence            4578899999999999999999997655544322    23333333233322 2  47899999996554

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=2.8e-11  Score=72.63  Aligned_cols=59  Identities=19%  Similarity=0.204  Sum_probs=39.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      |+|+|.+|+|||||+|.|++........  ...+.................+.|+||+...
T Consensus         4 VaivG~~nvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~   62 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEVSEEERFTLADIPGIIEG   62 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCceecc--CCCceeeeeceeeecCCCeEEEcCCCeeecC
Confidence            8999999999999999999876544332  2223222222222234556788999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=3.4e-10  Score=67.70  Aligned_cols=61  Identities=25%  Similarity=0.310  Sum_probs=40.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      .|+|+|.+|+|||||+|.|++......+. ....+......... .......++|+||+....
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~-~~~tt~~~~~~~~~-~~~~~~~~~DtpG~~~~~   67 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPM   67 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecc-cCCcccccccceee-eeeeeeeecccccccccc
Confidence            69999999999999999999875433221 11222222222222 256778999999997653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=6.7e-10  Score=65.09  Aligned_cols=63  Identities=33%  Similarity=0.448  Sum_probs=42.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      |..|+|+|++|+|||||+|.|++........ ..+.+.......... ......+.|+|++.+..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~   63 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREAS   63 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccccceEeeeeec-cCceeeecccccccccc
Confidence            4679999999999999999999876543221 111221111222333 56788899999998653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.5e-10  Score=77.52  Aligned_cols=64  Identities=28%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCce--eeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGV--TTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ...|+|+|.+|+|||||+|+|+|......+....+.  ++. ............+.++||||+....
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~-~~~~~~~~~~~~~~l~DtPG~~~~~  121 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTN  121 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCce-eeeeeeccCCCeEEEEeCCCccccc
Confidence            367999999999999999999997654444222111  111 1112222234557899999997543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=4.5e-10  Score=67.14  Aligned_cols=57  Identities=25%  Similarity=0.371  Sum_probs=36.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~   84 (107)
                      .|+|+|++|+|||||+|+|++.....+.  ..+.|...  ....+   ....++|+||+.....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~--~~g~T~~~--~~~~~---~~~~ivDtpG~~~~~~   58 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGK--RPGVTRKI--IEIEW---KNHKIIDMPGFGFMMG   58 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSS--STTCTTSC--EEEEE---TTEEEEECCCBSCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC--CCCEeecc--ccccc---ccceecccCCceeccc
Confidence            5899999999999999999987543321  11222211  11222   2346789999865443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.00  E-value=9.2e-10  Score=70.22  Aligned_cols=68  Identities=24%  Similarity=0.327  Sum_probs=42.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCCCCchHH
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~~~~~~~   89 (107)
                      .....++++|.+++|||||+|+|.+......|. ..+.|...+  ...  .....+++||||+......++..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~--~i~--~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQ--WVK--VGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------C--CEE--ETTTEEEEECCCCCCSCCCCHHH
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccce--EEE--CCCCeEEecCCCccccCCccHHH
Confidence            345789999999999999999999987665542 222332211  112  34568999999998665544433

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.99  E-value=5.8e-11  Score=70.72  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKAS   48 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g   48 (107)
                      +++|+||||||||||+++|++...+..|
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g   29 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAI   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcc
Confidence            5899999999999999999998887654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=8.8e-10  Score=66.04  Aligned_cols=61  Identities=30%  Similarity=0.351  Sum_probs=37.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ..+|+|+|++|+|||||+|+|++......+. ....+.........+ ......+.|+|++..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~   68 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRR   68 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeecc-CCceeeeeccCCccc
Confidence            4789999999999999999999876533321 112222222222333 566778889998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.2e-09  Score=64.76  Aligned_cols=60  Identities=30%  Similarity=0.404  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      +|+|+|++|+|||||+|.|+|......+. ..+.+......... .......+.|+|++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~   61 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVE-WYGKTFKLVDTCGVFDN   61 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEE-ETTEEEEEEECTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecc-cCceeecccccccc-ccccccccccccceeee
Confidence            68999999999999999999866543221 11222221222222 24567788899998754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=2.2e-10  Score=67.15  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=37.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .|+|+|.+|+|||||+|+|+|........ ..+.+......... .......+.|+||+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~   60 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIV-IRGILFRIVDTAGVRS   60 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEE-ETTEEEEEEESSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeec-cccccccceeEEEE-eCCeeEEecccccccc
Confidence            68999999999999999999865432221 11111111112222 2566778899999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.87  E-value=8.2e-10  Score=71.18  Aligned_cols=83  Identities=16%  Similarity=0.108  Sum_probs=51.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC----------------CcEEEEEeCCCCCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD----------------GQVVNVIDTPGLFD   81 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~----------------~~~~~v~d~p~~~~   81 (107)
                      .+..+||||.+++|||||+|+|++...+..+ ...+.|..+.........                ...+-++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~a-nypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcC-CCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4478999999999999999999976543222 122233222222222211                23567789999987


Q ss_pred             CCCCchHHHHHHHHHhhccC
Q 038901           82 LSAGSEFVGKEIVKCLGMAK  101 (107)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~  101 (107)
                      .-....-...+++..++.+.
T Consensus        88 gA~~g~GLGn~fL~~ir~~d  107 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVD  107 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCS
T ss_pred             ccccccccHHHHHHHhhccc
Confidence            65555555567777666543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=4.5e-09  Score=62.38  Aligned_cols=59  Identities=27%  Similarity=0.338  Sum_probs=36.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +|+|+|.+|+|||||+|+|++.......  ....+.................+.|+++...
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITS--RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM   65 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECC--CCSSCCSSCEEEEEEETTEEEEEESSSSCCH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeec--cCCCceEEEEEeeeecCCceeEeecCCCcee
Confidence            4889999999999999999987644332  1122222221222223455666778887753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=4.1e-09  Score=63.61  Aligned_cols=29  Identities=38%  Similarity=0.619  Sum_probs=23.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      |...-.+|+|+|++|+|||||+|+|+|..
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCC
Confidence            33333579999999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.76  E-value=1.7e-08  Score=59.19  Aligned_cols=55  Identities=24%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      .+|+|+|++|+|||||++.|.+......+     .+.......... ......+.|+||..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~~~D~~G~~   57 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-----PTLGFNIKTLEH-RGFKLNIWDVGGQK   57 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCSSCC-----CCSSEEEEEEEE-TTEEEEEEEECCSH
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCccc-----ceEeeeeeeccc-cccceeeeecCcch
Confidence            57999999999999999999886543222     222122222333 56678889999843

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=1.7e-08  Score=59.84  Aligned_cols=32  Identities=28%  Similarity=0.485  Sum_probs=25.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .|......|+|+|++++|||||+|+|++....
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            34555688999999999999999999987543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=2.5e-09  Score=64.91  Aligned_cols=55  Identities=18%  Similarity=0.329  Sum_probs=35.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+|+|+|++|||||||+|.|++.... .+     .+.......... ....+.+.|+|+...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~-~~-----tt~~~~~~~~~~-~~~~~~l~D~~g~~~   58 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVR-PT-----VVSQEPLSAADY-DGSGVTLVDFPGHVK   58 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC-CB-----CCCSSCEEETTG-GGSSCEEEECCCCGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC-Ce-----EEecceEEEEEe-CCeEEEEEecccccc
Confidence            57999999999999999999875432 11     111111111122 345568889998754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=2.7e-08  Score=63.47  Aligned_cols=64  Identities=27%  Similarity=0.404  Sum_probs=42.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC---Ccccccc-------------CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG---RRAFKAS-------------AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g---~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~~   83 (107)
                      ++|+|+|+.|+|||||+.+|+-   .......             ...++.+.........| +...+.++||||..++.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSCS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhhH
Confidence            5799999999999999999952   2221110             11223333444445565 78899999999999884


Q ss_pred             C
Q 038901           84 A   84 (107)
Q Consensus        84 ~   84 (107)
                      .
T Consensus        86 ~   86 (276)
T d2bv3a2          86 I   86 (276)
T ss_dssp             T
T ss_pred             H
Confidence            3

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.71  E-value=1.2e-08  Score=64.84  Aligned_cols=62  Identities=26%  Similarity=0.434  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC---Ccccc----ccC---------CCCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG---RRAFK----ASA---------GSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g---~~~~~----~g~---------~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      ++++|+|+.|+|||||+.+|+.   .....    .|.         ..++.+.........| +.+.+.++||||..++
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh
Confidence            5799999999999999999953   22111    111         1122333334445555 6788999999999876

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.69  E-value=9.3e-09  Score=66.55  Aligned_cols=25  Identities=16%  Similarity=0.076  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .|||+|.+++|||||+|+|++....
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~   26 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVE   26 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCc
Confidence            5899999999999999999997543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.69  E-value=2.5e-09  Score=68.30  Aligned_cols=79  Identities=16%  Similarity=0.136  Sum_probs=45.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC------------C----cEEEEEeCCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD------------G----QVVNVIDTPGLFDLS   83 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~------------~----~~~~v~d~p~~~~~~   83 (107)
                      ..+||||.+++|||||+|+|++.....+.  ....|..+.........            .    -.+-++|.||+...-
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~--ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN--YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCcccc--CCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            57999999999999999999976544332  12233333333222211            1    135588999998763


Q ss_pred             CCchHHHHHHHHHhhcc
Q 038901           84 AGSEFVGKEIVKCLGMA  100 (107)
Q Consensus        84 ~~~~~~~~~~~~~~~~~  100 (107)
                      ...+-...+++..++.+
T Consensus        81 ~~g~Glg~~FL~~ir~~   97 (278)
T d1jala1          81 SKGEGLGNKFLANIRET   97 (278)
T ss_dssp             HHHGGGTCCHHHHHHTC
T ss_pred             ccCCCccHHHHHHHHhc
Confidence            22223344566666654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.64  E-value=2.4e-08  Score=59.63  Aligned_cols=25  Identities=12%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .-.|+|+|..++|||||+|+|++..
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhc
Confidence            3579999999999999999999754

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.64  E-value=1.1e-08  Score=62.70  Aligned_cols=62  Identities=18%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc--CC-------------CCceeeEeeeeeEEeeCCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKAS--AG-------------SSGVTTTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g--~~-------------~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~~   82 (107)
                      -.|+++|..++|||||++.|+.......+  ..             .++.+.........+ ......++||||..++
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence            57999999999999999999743211100  00             012333333344454 5678899999998765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.60  E-value=1.9e-08  Score=62.32  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|+|+|+.++|||||+|+|++..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            569999999999999999998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=4.3e-08  Score=57.56  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+++++|.+|+|||||++.++...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            368999999999999999987643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=6.1e-08  Score=57.15  Aligned_cols=23  Identities=13%  Similarity=0.210  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++++|.+|+|||||++.+++.
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            46999999999999999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.56  E-value=6e-08  Score=56.04  Aligned_cols=55  Identities=15%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +|+|+|++|+|||||++.|++........ .....    ..... .......+.|+|+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~----~~~~~-~~~~~~~~~d~~g~~~   56 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VETVE-YKNISFTVWDVGGQDK   56 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCC-CSSCC----EEEEE-CSSCEEEEEECCCCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcccc-ceeeE----EEEEe-eeeEEEEEecCCCccc
Confidence            58899999999999999998654322211 11111    11112 2455677888888754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2.2e-08  Score=58.62  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+++|+|++|||||||++.|+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=6.7e-08  Score=55.81  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +++|+|++|+|||||+|.|.+...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~   25 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRL   25 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999997654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.1e-07  Score=56.06  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+++|+|.+|+|||||++.+++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCC
Confidence            368999999999999999987543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.49  E-value=2.5e-07  Score=53.62  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      +..+++|+|.+|+|||||+|.+++...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~   30 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEV   30 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346799999999999999999987654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=1.5e-07  Score=57.07  Aligned_cols=58  Identities=22%  Similarity=0.305  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLF   80 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~   80 (107)
                      +.|+|+|++|+|||||+|.|++......- ..  .+.................++|+++..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~~d~~g~~   58 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TS--ITDSSAIYKVNNNRGNSLTLIDLPGHE   58 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CC--CSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccc-CC--eeEEEEEEEEeeeeeeeeeeeeccccc
Confidence            46899999999999999999875432211 11  111111111111134567788888753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-07  Score=55.65  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+++|+|..|+|||||++.++.-.
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            569999999999999999988643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-07  Score=55.94  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~~   82 (107)
                      .+++++|..|+|||||++.+.+....... .. ..+........... ......++|+||....
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   69 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPEL-AA-TIGVDFKVKTISVDGNKAKLAIWDTAGQERF   69 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTC-CC-CCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCcc-cc-ceeecceeEEEEEeccccEEEEEECCCchhh
Confidence            56999999999999999998764322221 11 11111111122221 1235788899987543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=4.5e-08  Score=58.48  Aligned_cols=25  Identities=36%  Similarity=0.400  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      |+.++|+||+|||||||++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            6889999999999999999997654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.47  E-value=2.1e-07  Score=54.43  Aligned_cols=55  Identities=18%  Similarity=0.146  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGL   79 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~   79 (107)
                      .+++|+|++|+|||||++.+.+-... ..   ...|.......... ......++|+||.
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~-~~---~~~T~~~~~~~~~~-~~~~~~i~D~~G~   57 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFN-ED---MIPTVGFNMRKITK-GNVTIKLWDIGGQ   57 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC-CS---CCCCCSEEEEEEEE-TTEEEEEEEECCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCC-Cc---ccccceeeeeeeee-eeEEEEEeecccc
Confidence            57899999999999999998764322 11   11122112222332 4567788899874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=2.1e-07  Score=56.00  Aligned_cols=61  Identities=23%  Similarity=0.246  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~~   82 (107)
                      ..++|+|..|+|||||++.++.-..........+....  ....... ....+.++|+||....
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~e~~   68 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQERF   68 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE--EEEEEETTEEEEEEEECCTTTTTT
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEE--EEEEEEeeEEEEEEEEECCCchhh
Confidence            46999999999999999988754322111111111111  1112221 1346677899986543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.45  E-value=4.5e-07  Score=53.39  Aligned_cols=61  Identities=21%  Similarity=0.254  Sum_probs=36.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      +..+..+++++|+.|+|||||+|.|.+.......     .+.......... ......+.|+++...
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~g~~~   72 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRK   72 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGG
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeecccccc
Confidence            3344578999999999999999999775432111     111111122222 455677788877543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.45  E-value=4.6e-08  Score=57.67  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.|+|+|++|+|||||.+.|+...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.43  E-value=9.7e-08  Score=56.03  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .|++|+|.|++||||||+.+.|....
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.4e-07  Score=54.78  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++++|.+|+|||||++.+++-.
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            469999999999999999887643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.41  E-value=7e-08  Score=56.93  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+..+++|+|++|||||||++.|.+...
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~   38 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL   38 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3457899999999999999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.41  E-value=3.3e-07  Score=54.04  Aligned_cols=59  Identities=20%  Similarity=0.191  Sum_probs=36.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .+...++++|++|+|||||++.++........     .+......... .......+.|+||...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~~~~~-~~~~~~~i~D~~g~~~   68 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVETVT-YKNVKFNVWDVGGQDK   68 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEEEEEE-ETTEEEEEEEESCCGG
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeEEEee-ccceeeEEecCCCcch
Confidence            34467999999999999999999865433221     11111111122 2456677888887653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.41  E-value=1e-07  Score=55.89  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=24.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+|.+|.|+|++||||||+.+.|+..+
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999999998554

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.3e-07  Score=53.71  Aligned_cols=61  Identities=13%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      .+++|+|.+|+|||||++.+++........  ................ .....+.|++|....
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~   66 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF   66 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccccceeEEEEECCEEEEEEEeccCCchhH
Confidence            468999999999999999987643222111  1111111112222211 236678899986433

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.40  E-value=1.9e-07  Score=56.67  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=40.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      .-.|+++|.-++|||||++.|++......+              ....+.+.........+ ..+...++|+||..+
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~   78 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD   78 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH
Confidence            457999999999999999999863211111              01123333333333444 567889999999754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.40  E-value=9e-08  Score=56.25  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++++|+|++|||||||++.|+..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999998876554

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=3.2e-07  Score=53.62  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      -+++|+|.+|+|||||++.++..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988743

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.4e-07  Score=53.35  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++|+|..|+|||||++.++.-
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999987653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.7e-07  Score=54.46  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+|+|+|..|+|||||++.+..-
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999988753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.39  E-value=5.5e-08  Score=57.91  Aligned_cols=62  Identities=23%  Similarity=0.238  Sum_probs=35.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeCCcEEEEEeCCCCCC
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKDGQVVNVIDTPGLFD   81 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~d~p~~~~   81 (107)
                      ....+...++++|.+|+|||||++.+.+........ ..+..    ..... .......+.|+|+...
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~-t~~~~----~~~~~-~~~~~~~i~D~~g~~~   73 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFN----VETLS-YKNLKLNVWDLGGQTS   73 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STTCC----EEEEE-ETTEEEEEEEEC----
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccceE----EEEEe-eCCEEEEEEecccccc
Confidence            345556889999999999999999997654433211 11111    11112 2455567777776643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.3e-07  Score=52.98  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD   81 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~   81 (107)
                      +|+|+|..|+|||||++.+++......-  ................ ......+.|+++...
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   61 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTIRLQLWDTAGQER   61 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEECSSCEEEEEEEEECCSGG
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeeeccceeeccCCCceeeeecccCCcch
Confidence            5899999999999999998854422211  1111111111111111 134567888887654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.38  E-value=1.5e-07  Score=55.13  Aligned_cols=27  Identities=19%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +++..|+|.|++||||||+.+.|....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            466889999999999999999997644

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.37  E-value=5.9e-07  Score=52.73  Aligned_cols=28  Identities=18%  Similarity=0.250  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      +..+|+|+|.+|||||||++.|.+....
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~   41 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVV   41 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4478999999999999999999986543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.5e-07  Score=55.03  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+.++.|+|++||||||+.+.|+...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345889999999999999999997654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=5e-07  Score=53.74  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+|+|+|.+|+|||||++.+++-
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999988753

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.34  E-value=1.7e-07  Score=53.92  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +.|.|.|++|||||||.+.|+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998853

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.7e-07  Score=57.29  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .|..+.|+||+|+|||||++.|+...
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            47889999999999999999997644

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.2e-06  Score=55.79  Aligned_cols=64  Identities=25%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCceeeEeeeeeEE--eeCCcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSGVTTTCEMKTTV--LKDGQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~-~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~d~p~~~~~   82 (107)
                      -.+|+++|+.++|||||+|.|++.... ..|......|...+.....  ......++++||.|+.+.
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            368999999999999999999986532 1121112233222222111  113457899999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.30  E-value=2.2e-07  Score=54.76  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +++|+|.|++||||||+.+.|...+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999996543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.8e-07  Score=54.98  Aligned_cols=27  Identities=26%  Similarity=0.214  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      +.|.|.|++|+|||||++.++......
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            468999999999999999998776543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.29  E-value=2.6e-07  Score=54.04  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .++|.|.|++||||||+.+.|+....
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.6e-07  Score=53.04  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+++++|.+|+|||||++.+++-.
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~   27 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKR   27 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCC
Confidence            368999999999999999887543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2.2e-07  Score=53.57  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.|.|+|++||||||+.+.|+..+
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999997643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=8.3e-07  Score=51.91  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      -+|+|+|.+|+|||||++.+++..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            569999999999999999988643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=8.8e-07  Score=51.99  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++++|..|+|||||++.++.-.
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            468999999999999999988543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.26  E-value=2.9e-07  Score=53.57  Aligned_cols=24  Identities=25%  Similarity=0.428  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.|.|.|++||||||+.+.|+...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578999999999999999998654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.25  E-value=2.8e-07  Score=56.69  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      +++|+|+.|||||||++.|+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.25  E-value=4.6e-07  Score=54.28  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +..+|+|+||+||||||+.+.|+..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4478999999999999999999754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.8e-06  Score=48.90  Aligned_cols=61  Identities=18%  Similarity=0.272  Sum_probs=35.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEeeC-CcEEEEEeCCCCCCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLKD-GQVVNVIDTPGLFDL   82 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~d~p~~~~~   82 (107)
                      -..|+|+|..|+|||||++.++.-.... ..... . ............ .....+.|+++....
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f~~-~~~~t-~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~   67 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPT-I-EDSYTKICSVDGIPARLDILDTAGQEEF   67 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTT-C-CEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCc-ccccc-c-ccceeeEeccCCeeeeeecccccccccc
Confidence            3579999999999999999887533221 11111 1 111112222211 235677899987654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1.2e-06  Score=51.29  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+++|+|.+|+|||||++.+...
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999998754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.8e-06  Score=50.45  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...|+|+|..|+|||||++.+++.
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            467999999999999999998753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.7e-06  Score=50.53  Aligned_cols=23  Identities=30%  Similarity=0.223  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+++|+|.+|+|||||++.+++-
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.2e-07  Score=53.14  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++++|.+|+|||||++.++.-
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.4e-06  Score=51.28  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+|+|+|.+|+|||||++.++.-
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35999999999999999888753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.23  E-value=3e-07  Score=53.61  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..|+|+|++||||||+.+.|+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.22  E-value=1.8e-06  Score=51.89  Aligned_cols=24  Identities=17%  Similarity=0.381  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      -.|+++|.-++|||||++.|++..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEEeccCCcHHHHHHHHHhhh
Confidence            468999999999999999999854

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=1.4e-06  Score=51.11  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccCCCCceeeEeeeeeEEee-CCcEEEEEeCCCCCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSGVTTTCEMKTTVLK-DGQVVNVIDTPGLFD   81 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~d~p~~~~   81 (107)
                      -+++|+|..|+|||||++.+++-.....-....+..  ......... ......+.|++|...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~--~~~~~i~~~~~~~~l~i~d~~g~~~   64 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA--FLTQRVTINEHTVKFEIWDTAGQER   64 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccce--eeccccccccccccccccccCCchh
Confidence            468999999999999999877543222111111111  111122221 123567888888654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1.7e-06  Score=56.48  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      +.|+|+|+-++|||||+.+|+
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHH
Confidence            569999999999999999995

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=1.8e-06  Score=50.24  Aligned_cols=23  Identities=13%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..|+|+|..|+|||||++.++.-
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.21  E-value=5.2e-07  Score=53.90  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      +|.++.|+||+||||||+.+.|+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            567888999999999999999983

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2e-07  Score=55.54  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +|.+|.|+|++||||||+.+.|+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999999743

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.8e-06  Score=49.79  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      -.|+|+|.+|+|||||++.+++-
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999988753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.4e-06  Score=51.08  Aligned_cols=24  Identities=42%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .++|+|..|+|||||++.+.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEEECCCCcCHHHHHHHHhCCcc
Confidence            589999999999999999988643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=1.9e-07  Score=55.20  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=9.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..|+|+|..|+|||||++.+++..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEEEECCCCC-------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            468999999999999999888643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.20  E-value=6.3e-07  Score=53.29  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...+|||-|++|||||||.+.|...
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=3.1e-07  Score=58.46  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+|+|+|||||||+|.+|.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4788999999999999999844

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4.4e-06  Score=48.83  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      -.++|+|.+|+|||||++.+++-.
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999988643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.7e-07  Score=53.66  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +.++|+||+|+||+||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999998854

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.1e-06  Score=48.81  Aligned_cols=25  Identities=40%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .-.++|+|..|+|||||++.+++..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC
Confidence            3579999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=9.8e-07  Score=52.92  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +-.++.|+||+||||||+.+.|+..+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.2e-06  Score=47.66  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      -.++|+|..|+|||||++.++.-
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999998864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.15  E-value=1.1e-06  Score=53.95  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=21.4

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        12 ~~~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.....+++|+||+|+||||++--|+...
T Consensus         5 ~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             CCSCSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             ccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34555667899999999999999987776543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.2e-06  Score=50.57  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+|.+|+|||||++.++.-.
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            568999999999999999987643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=5.9e-07  Score=53.77  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 038901           22 VVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~   43 (107)
                      |+|+||+||||+||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999997543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=1.4e-06  Score=53.51  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        13 ~~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+..+..+++++||+|+||||++--|+...
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445566899999999999999987776443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=7.5e-07  Score=57.96  Aligned_cols=26  Identities=19%  Similarity=0.118  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+..+|+|.|++|+|||||++.|+..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999743

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1e-06  Score=52.19  Aligned_cols=26  Identities=31%  Similarity=0.280  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .....|.++|++||||||+.+.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999988643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1.2e-07  Score=56.41  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038901           21 TVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g   41 (107)
                      +.+|+|+|||||||++.+|.-
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999953

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=98.13  E-value=5.6e-07  Score=58.47  Aligned_cols=28  Identities=29%  Similarity=0.390  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFKA   47 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~~   47 (107)
                      ..+.|.|++|||||||+|+|++..++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~  194 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEE  194 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             CCEEEEeeccccchHHHHHHhhhccccc
Confidence            4589999999999999999999887543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.5e-06  Score=49.52  Aligned_cols=25  Identities=40%  Similarity=0.554  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      -.++|+|..|+|||||++.+++...
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcC
Confidence            4689999999999999999987543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.10  E-value=1.1e-06  Score=54.20  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=36.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC---Ccccc--------------------------ccCCCCceeeEeeeeeEEeeCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG---RRAFK--------------------------ASAGSSGVTTTCEMKTTVLKDGQ   69 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g---~~~~~--------------------------~g~~~~~~~~~~~~~~~~~~~~~   69 (107)
                      .-.|+++|.-++|||||+..|+.   .....                          .-....+.+.........+ ...
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCc
Confidence            35799999999999999988852   21100                          0011222333333333444 567


Q ss_pred             EEEEEeCCCCCCC
Q 038901           70 VVNVIDTPGLFDL   82 (107)
Q Consensus        70 ~~~v~d~p~~~~~   82 (107)
                      ...++|+||..++
T Consensus        82 ~i~iiDtPGH~df   94 (224)
T d1jnya3          82 FFTIIDAPGHRDF   94 (224)
T ss_dssp             EEEECCCSSSTTH
T ss_pred             eeEEeeCCCcHHH
Confidence            8899999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=1.1e-06  Score=52.85  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..|+++|.+|||||||.+.|+...
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999998543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=5.9e-07  Score=56.05  Aligned_cols=64  Identities=27%  Similarity=0.377  Sum_probs=42.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh---CCcccc------------cc--------------CCCCceeeEeeeeeEEeeCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL---GRRAFK------------AS--------------AGSSGVTTTCEMKTTVLKDG   68 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~---g~~~~~------------~g--------------~~~~~~~~~~~~~~~~~~~~   68 (107)
                      +.-.++++|.-++|||||+..|+   |.....            .+              +...+.+.........+ ..
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CC
Confidence            34689999999999999998885   322110            00              01133444444444555 67


Q ss_pred             cEEEEEeCCCCCCC
Q 038901           69 QVVNVIDTPGLFDL   82 (107)
Q Consensus        69 ~~~~v~d~p~~~~~   82 (107)
                      +...++|+||..++
T Consensus        84 ~~i~iiDtPGH~df   97 (239)
T d1f60a3          84 YQVTVIDAPGHRDF   97 (239)
T ss_dssp             EEEEEEECCCCTTH
T ss_pred             EEEEEEECCCcHHH
Confidence            88999999999875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.10  E-value=4.8e-06  Score=51.25  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 038901           19 ERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~   40 (107)
                      -.+++++|.-.+|||||++.|+
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEEcCCCCCHHHHHHHHH
Confidence            3568999999999999999995

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.09  E-value=8.8e-07  Score=51.82  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .|.|+|++||||||+.+.|+...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999996543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=9.9e-07  Score=52.98  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 038901           22 VVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~   42 (107)
                      |+|+||+|||||||++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            779999999999999998654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.07  E-value=1.2e-06  Score=51.77  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +|.|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=1.2e-06  Score=57.54  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+|+|+|||||||++.+|+
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999984

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.06  E-value=1.1e-05  Score=47.05  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+++|+|..|+|||||++.++.
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.06  E-value=1.4e-06  Score=52.19  Aligned_cols=26  Identities=19%  Similarity=0.472  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..+|.|+||+||||||+.+.|+...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999997644

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.04  E-value=1.2e-06  Score=52.23  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|.|+||+||||||+.+.|+...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999999996544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.04  E-value=1.8e-06  Score=52.76  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ++.+++++||+|+||||++--|+...
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45889999999999999987776543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.7e-06  Score=52.48  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|||-|++|||||||.+.|....
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999886543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.04  E-value=1.5e-06  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +++.|.|++||||||+++.|...+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            567889999999999999997543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.03  E-value=2e-06  Score=53.55  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....+.|.||+|||||||.++|++...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            346699999999999999999987553

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=1.3e-06  Score=51.16  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +|+|+|++||||||+.+.|+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4778899999999999998644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=3.3e-06  Score=51.69  Aligned_cols=27  Identities=19%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ....+++++||+|+||||++--|+...
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            334789999999999999998787543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.01  E-value=1.5e-06  Score=51.06  Aligned_cols=23  Identities=17%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +.|.|+|++||||||+.+.|+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            34778999999999999999643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2e-06  Score=51.03  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      -+++|+|.+|+|||||++.+++.
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            46899999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.01  E-value=1.8e-06  Score=51.13  Aligned_cols=23  Identities=30%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +|.|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999997554

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.2e-06  Score=51.14  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+|.|+||+||||||..+.|+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6e-06  Score=49.02  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+++|+|..|+|||||++.++.-
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhC
Confidence            46999999999999999988753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.99  E-value=2.7e-06  Score=51.01  Aligned_cols=26  Identities=19%  Similarity=0.311  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..+++|+|++||||||+.+.|+...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999997643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.99  E-value=2.7e-06  Score=55.21  Aligned_cols=26  Identities=27%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+..+++|.|++|+|||||++.|...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            34588999999999999999999854

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.3e-06  Score=48.84  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      -.|+|+|..|+|||||++.++.-.
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            468999999999999998887543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.6e-06  Score=50.52  Aligned_cols=27  Identities=19%  Similarity=0.106  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ++.-.++|+|.+|+|||||++.++.-.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCC
Confidence            344689999999999999999987643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=1.3e-05  Score=46.92  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++++|..|+|||||++.+++.
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999988763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=2.8e-06  Score=50.13  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +|.|+|++||||||..+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998644

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=3.1e-06  Score=50.03  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      +|.|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999644

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.3e-05  Score=47.27  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+++++|..|+|||||++.+++..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            789999999999999999887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1e-05  Score=47.77  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      -.++|+|.+|+|||||++.++.-
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999877654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.92  E-value=7.3e-06  Score=49.99  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+++|+||+|+||||++-.|+...
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998887543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.91  E-value=4.3e-06  Score=50.94  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=23.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..++.+|.|.|.+|||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35778999999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.5e-05  Score=44.75  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..++|+|..|+|||||++.++.-.
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            568999999999999999887543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=4.7e-06  Score=49.29  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+|.|+|++||||||+.+.|+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.89  E-value=4.2e-06  Score=49.97  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+..+|+|-|..||||||+++.|....
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445789999999999999999997654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=5.8e-06  Score=52.53  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++++|.-.+|||||||+|+|...
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCc
Confidence            3588999999999999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.84  E-value=6.2e-06  Score=52.63  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..++++|.-.+|||||||+|+|...
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            3589999999999999999999874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=7.7e-06  Score=50.47  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....+.|.||+|+||||++++|+....
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            336799999999999999999987654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.83  E-value=3.8e-06  Score=52.44  Aligned_cols=21  Identities=38%  Similarity=0.699  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ..|+++|.-++|||||+..|+
T Consensus        25 iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          25 VNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEEECGGGTHHHHHHHHH
T ss_pred             eEEEEEeeCCCCHHHHHHHHH
Confidence            469999999999999999983

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=7.4e-06  Score=48.74  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..+|||.|..||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998854

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=1.9e-05  Score=46.87  Aligned_cols=20  Identities=30%  Similarity=0.426  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 038901           20 RTVVLLGRTGNGKSATGNSI   39 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l   39 (107)
                      -.+.|+|.+|+|||||++.+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            56899999999999999988

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=8.6e-06  Score=49.14  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+|+|.||+||||||+-+.|+....
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4899999999999999999965543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.76  E-value=7.6e-06  Score=52.57  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +...+.|+||+|+|||.|.++|+...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            34668899999999999999998654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=8.6e-06  Score=50.03  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..+.|.||+|+||||++++|++...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999986543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.2e-05  Score=48.92  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +|..|+|-|+.||||||+++.|...+
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999886543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=9.3e-06  Score=49.79  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ..+.|.||+|+||||+.++|+.....
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC
Confidence            35889999999999999999866543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.72  E-value=1.3e-05  Score=48.91  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+.|.||+|+||||++++|+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            458899999999999999998643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.68  E-value=1.5e-05  Score=48.21  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+|+|-||+||||||+.+.|+....
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5688889999999999999976443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.5e-05  Score=48.13  Aligned_cols=26  Identities=23%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +|+.|+|-|+.||||||+++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999987543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.67  E-value=3.4e-05  Score=46.51  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .-.++++|.-.+|||||++.|++...
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhc
Confidence            36899999999999999999998544

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.66  E-value=2e-05  Score=48.58  Aligned_cols=27  Identities=30%  Similarity=0.350  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ....+.|.||+|+||||+++.|+....
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            346799999999999999999986543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=9.3e-06  Score=49.63  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+.|+|-|+-||||||+++.|.....
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            57899999999999999999987653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.65  E-value=8.3e-06  Score=52.04  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +..+|||.|.+||||||+.+.|....
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence            44689999999999999999886544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=2.5e-05  Score=45.98  Aligned_cols=27  Identities=22%  Similarity=0.188  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRAFK   46 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~~~   46 (107)
                      -.++|+|..|+|||||++.+.....++
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~~t   29 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHEAG   29 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC
Confidence            578999999999999999886544333

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.64  E-value=1.7e-05  Score=48.93  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+..++|.|+.|+|||||++.++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            346899999999999999998764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=2e-05  Score=50.73  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+|||.|++|||||||.+.|..++
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            34799999999999999998886554

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.7e-05  Score=48.37  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+.|.||+|+||||++++|+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4789999999999999999865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.61  E-value=2.2e-05  Score=48.85  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .-+.|.||+|+|||++.++|+...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            568999999999999999998653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=8.7e-05  Score=43.71  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..++|+|..|+|||||++.+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999988543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2.5e-05  Score=48.91  Aligned_cols=26  Identities=27%  Similarity=0.562  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..-+.|.||+|+|||+++++|+....
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            46689999999999999999986543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=2.1e-05  Score=47.43  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+|||.|..||||||+.+.|-.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=2.7e-05  Score=47.37  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|..|+|=|.-||||||+++.|....
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            368899999999999999999997544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=3.1e-05  Score=47.90  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 038901           19 ERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+.|.|||.+||||+++.+.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            3678899999999999999883

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3e-05  Score=46.00  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..+|..+.|.|++|+|||||...++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            35679999999999999999877653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.53  E-value=2.9e-05  Score=47.37  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ..+.|+|.+|+|||||++.+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            578999999999999998874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=3e-05  Score=46.85  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+|||.|..||||||..+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            489999999999999999885

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=2.9e-05  Score=48.35  Aligned_cols=24  Identities=29%  Similarity=0.587  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .-+.|.||+|+|||+|+++|+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            458999999999999999998654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=4.1e-05  Score=45.80  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .|+|-|.-||||||+++.|....
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999987543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=3.7e-05  Score=46.72  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+.|.||+|+||||++++|+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHH
Confidence            37899999999999999887543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.46  E-value=3.7e-05  Score=50.99  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      =.+.|.||+||||||++.+++....
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4588999999999999999987653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=5.6e-05  Score=47.41  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...-+.|.||+|+|||+|+++|++...
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            346699999999999999999987654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=6.9e-05  Score=46.75  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .-+.|.||+|+|||+++++++....
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhC
Confidence            4589999999999999999987543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.43  E-value=5.1e-05  Score=46.65  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ..+.|.|||.+||||+++.+.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            478999999999999999874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.42  E-value=2.4e-05  Score=48.49  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 038901           21 TVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+.|.||+|+||||+++.++...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=7.7e-05  Score=47.43  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ...+|||-|+.|||||||.+.|...
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHH
Confidence            3479999999999999999877543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=5.1e-05  Score=46.02  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038901           21 TVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .+.|.||+|+||||++++|+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3779999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=4e-05  Score=47.03  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..+.|.||+|+||||++++++..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            34789999999999999998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.36  E-value=3.3e-05  Score=51.93  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..|.++||+|+|||-|.+.|++..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.00011  Score=42.87  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      ..++.++.|-|+=|||||||.+.|+.....
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            346789999999999999999999866543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00012  Score=46.92  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=23.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+...+.++||+|+|||.|.+.|+...
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            3444578999999999999999997654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=8.1e-05  Score=45.08  Aligned_cols=26  Identities=19%  Similarity=0.196  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      -.+|..+.|.|++|+|||||...++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            45679999999999999999977653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.29  E-value=0.0001  Score=43.75  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .|.-+.|.|++|+|||||.-.|..
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            356789999999999999977764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.28  E-value=0.00011  Score=43.46  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .|.-+.|.|++|+||||+.-.|..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            356799999999999999877653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.6e-05  Score=45.41  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      .++.|.|.=|||||||++.|+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            57889999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.21  E-value=0.00014  Score=45.35  Aligned_cols=26  Identities=19%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ...+|+.+.|.|++|+|||||+..|+
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            45578999999999999999986665

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.18  E-value=0.00014  Score=44.50  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+|||.|.-||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999853

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00016  Score=46.02  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=26.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .|..+|.+++|+|++|+|||||+..|+...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999998887643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.17  E-value=0.00017  Score=47.17  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++...+.|.||+|+|||++.++|++...
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4457899999999999999999987654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.15  E-value=0.00013  Score=44.43  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .++|..+.|.|++|+|||||.-.++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            4567999999999999999986553

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.12  E-value=4.6e-05  Score=49.04  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      -.+.|+|++|+|||||++.|..+++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            3589999999999999999987653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.12  E-value=0.0002  Score=42.16  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .|.-+.|.|++|+||||+.-.|.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            35779999999999999986654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00018  Score=43.83  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.|+|=|.-||||||+++.|....
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            689999999999999999997543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00023  Score=43.31  Aligned_cols=26  Identities=12%  Similarity=0.157  Sum_probs=22.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .-.+|..+.|.|++|+|||+|.-.++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            34577999999999999999987665

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00023  Score=44.77  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.|||++|+|||+++..|+..+
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            3578899999999999999987543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.06  E-value=0.00022  Score=43.37  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      -.++..+.|.|++|+|||+|.-.++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34678999999999999999966653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00027  Score=42.49  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.|+|++|+|||+++..|+..+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            3578999999999999998887644

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.04  E-value=0.00024  Score=42.87  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      ..+|..+.|.|++|+|||+|.-.++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4567999999999999999986664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.01  E-value=0.00021  Score=43.36  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 038901           22 VVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.|.|++|+|||-|+++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.00  E-value=0.00022  Score=42.85  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHH
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSI   39 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l   39 (107)
                      -++|..+.|.|++|+|||+|.-.+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            457899999999999999997543

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00018  Score=47.39  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+.|+|++|+|||++++.|+-
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            46699999999999999976653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.98  E-value=0.00028  Score=46.17  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.++||+|+|||-|.+.|+...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            3569999999999999999997654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00033  Score=43.35  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038901           18 GERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      +|..+.|.|++|+|||||+-.|+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHH
Confidence            46889999999999999986665

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.78  E-value=0.00065  Score=42.58  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 038901           18 GERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ...+++|.|.-|.|||||.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00084  Score=42.98  Aligned_cols=27  Identities=22%  Similarity=0.366  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+.-.+.++||+|+|||.+.+.|+...
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHh
Confidence            334478899999999999999987654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00066  Score=41.53  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+.|.||+|+||||+.++++...
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHh
Confidence            347788999999999999986543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00069  Score=40.72  Aligned_cols=24  Identities=13%  Similarity=0.119  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+.|.||+|+||||+++.++..+
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhc
Confidence            458899999999999999887643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.59  E-value=0.00056  Score=44.05  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 038901           22 VVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.+.||+|+|||.|.++|++..
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHh
Confidence            4457999999999999998764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.0011  Score=41.78  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      +..+|++++|+|..|+|||||+-.|+
T Consensus        64 pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          64 PYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             cccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            55678999999999999999986664

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.35  E-value=0.0011  Score=42.72  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+|.|=|+-|+||||+++.|....
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            568999999999999999997653

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.0015  Score=36.20  Aligned_cols=26  Identities=12%  Similarity=0.093  Sum_probs=22.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        16 ~~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .++|..+.+-|-+|+||||+.++|.-
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            35788999999999999999999843

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.31  E-value=0.0017  Score=40.57  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++...+.|.||.++|||+|+++|+....
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3446789999999999999999988763

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.27  E-value=0.0017  Score=41.87  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+|.|=|+-|+||||+++.|.....
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            5788999999999999999987654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.25  E-value=0.0011  Score=43.75  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..+.|||++|+|||+++.-|+..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999877643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.24  E-value=0.0011  Score=42.76  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .+|.|=|+-|+||||+++.|.....
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5689999999999999999986543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.23  E-value=0.0014  Score=39.52  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ++...+.|.||.++|||+++.+|+....
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            4447899999999999999999987753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0023  Score=41.65  Aligned_cols=20  Identities=35%  Similarity=0.523  Sum_probs=17.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHH
Q 038901           19 ERTVVLLGRTGNGKSATGNS   38 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~   38 (107)
                      +..+.|.|+.|+||||++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            57899999999999998743

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0025  Score=39.80  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      ..|.++.|.|++|+|||||.=.++.
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHH
Confidence            4678999999999999999855543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.04  E-value=0.002  Score=35.72  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=17.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATGNSI   39 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l   39 (107)
                      ..++..|.+|+|+|||+++-.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            3477888999999999988443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0022  Score=40.98  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=16.5

Q ss_pred             CceEEEEEcCCCCCHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll   36 (107)
                      .+.+.++.|.||+|||||-
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4678899999999999964

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.96  E-value=0.0015  Score=40.71  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCCHHHHH-HHHh
Q 038901           21 TVVLLGRTGNGKSATG-NSIL   40 (107)
Q Consensus        21 ~i~liG~nG~GKSTll-~~l~   40 (107)
                      .+.|+|+.|+||||++ ..+.
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~   36 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIA   36 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHH
Confidence            4778999999999765 4443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.87  E-value=0.002  Score=40.53  Aligned_cols=16  Identities=19%  Similarity=0.484  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCCHHHHH
Q 038901           21 TVVLLGRTGNGKSATG   36 (107)
Q Consensus        21 ~i~liG~nG~GKSTll   36 (107)
                      .+.|.|+.||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3778999999999765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.87  E-value=0.0027  Score=39.97  Aligned_cols=29  Identities=17%  Similarity=0.353  Sum_probs=24.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 038901           11 KPTSPSNGERTVVLLGRTGNGKSATGNSI   39 (107)
Q Consensus        11 ~~~~~~~~~~~i~liG~nG~GKSTll~~l   39 (107)
                      +...+..+|.+++|+|++|+|||+|+..+
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHH
Confidence            44557778999999999999999998543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.0026  Score=40.80  Aligned_cols=19  Identities=26%  Similarity=0.520  Sum_probs=16.5

Q ss_pred             CceEEEEEcCCCCCHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll   36 (107)
                      .+.+..+.|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4578999999999999973

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.69  E-value=0.0035  Score=40.23  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=16.7

Q ss_pred             CceEEEEEcCCCCCHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll   36 (107)
                      .+.+..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4578889999999999985

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.68  E-value=0.0032  Score=39.74  Aligned_cols=27  Identities=15%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           14 SPSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        14 ~~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .+..+|.+++|+|+.|+|||+|+-.++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            356678999999999999999975443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.60  E-value=0.003  Score=34.54  Aligned_cols=20  Identities=30%  Similarity=0.172  Sum_probs=16.2

Q ss_pred             CCceEEEEEcCCCCCHHHHH
Q 038901           17 NGERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll   36 (107)
                      ++++.+.|..|+|+|||..+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            35688999999999999443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.58  E-value=0.0055  Score=38.32  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038901           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll~~l~   40 (107)
                      .-+.|.++-|.|++|+|||||.-.++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHH
Confidence            44567999999999999999974444

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.54  E-value=0.0044  Score=38.75  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.|.++-|.|++++|||||.-.++...
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHH
Confidence            467899999999999999987766443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.01  E-value=0.0092  Score=36.64  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038901           20 RTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .-|.|.|+.|+||+++.++|..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4588999999999999999963

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.015  Score=34.54  Aligned_cols=26  Identities=4%  Similarity=-0.069  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      .+..+.+.|++|+||||+...++...
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999887643

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.015  Score=34.06  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRT-GNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~n-G~GKSTll~~l~g~~   43 (107)
                      +++.|.|.. |+||||+--.|+...
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            578899996 999999987776554

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.46  E-value=0.017  Score=40.49  Aligned_cols=27  Identities=22%  Similarity=0.463  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ...+.|.|.|.+|||||+-.+.|+..+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            355889999999999999998886654

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.20  E-value=0.021  Score=40.23  Aligned_cols=28  Identities=18%  Similarity=0.442  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ...+.|.|-|.+|||||+-.+.|+..+.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4568899999999999999988877653

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.20  E-value=0.021  Score=40.27  Aligned_cols=29  Identities=17%  Similarity=0.406  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRAF   45 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~~   45 (107)
                      .+...|.|-|.+|||||...+.|+..+..
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~~  151 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLAS  151 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            45689999999999999999988766543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.94  E-value=0.0097  Score=35.92  Aligned_cols=19  Identities=26%  Similarity=0.406  Sum_probs=15.9

Q ss_pred             CceEEEEEcCCCCCHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll   36 (107)
                      .|+.+.++.|+|+|||+..
T Consensus        57 ~g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHH
T ss_pred             CCCCEEEEecCCChHHHHH
Confidence            4577899999999999754

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.80  E-value=0.026  Score=40.23  Aligned_cols=28  Identities=18%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .....|.|-|.+|||||.-.+.|+..+.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3468899999999999998888776653

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.56  E-value=0.036  Score=31.03  Aligned_cols=22  Identities=18%  Similarity=0.081  Sum_probs=17.9

Q ss_pred             ceEEEEEcCCCCCHHH-HHHHHh
Q 038901           19 ERTVVLLGRTGNGKSA-TGNSIL   40 (107)
Q Consensus        19 ~~~i~liG~nG~GKST-ll~~l~   40 (107)
                      |..-.++||=.||||| |++.+-
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHH
Confidence            4667899999999999 667663

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.44  E-value=0.0085  Score=35.30  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=15.1

Q ss_pred             ceEEEEEcCCCCCHHHHH
Q 038901           19 ERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll   36 (107)
                      +..+.+..|+|+|||+..
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            467889999999999753

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.43  E-value=0.012  Score=36.46  Aligned_cols=17  Identities=24%  Similarity=0.372  Sum_probs=15.2

Q ss_pred             CceEEEEEcCCCCCHHH
Q 038901           18 GERTVVLLGRTGNGKSA   34 (107)
Q Consensus        18 ~~~~i~liG~nG~GKST   34 (107)
                      +++.+.+.+|+|+|||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            56889999999999996

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.43  E-value=0.028  Score=32.65  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=13.3

Q ss_pred             EEEEEcCCCCCHHHHHH
Q 038901           21 TVVLLGRTGNGKSATGN   37 (107)
Q Consensus        21 ~i~liG~nG~GKSTll~   37 (107)
                      .+.++.|+|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            46688999999997543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.16  E-value=0.04  Score=38.83  Aligned_cols=28  Identities=18%  Similarity=0.420  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .....|.|-|.+|||||.-.+.|+..+.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4568899999999999999888876553

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.14  E-value=0.036  Score=39.43  Aligned_cols=28  Identities=18%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      ..+..|.|-|.+|||||...+.|+..+.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3568999999999999998887776554

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.75  E-value=0.047  Score=33.26  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ++|+|.|.=|+||||+.-.|+..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~   24 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSG   24 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHH
Confidence            57899999999999998665443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.26  E-value=0.066  Score=31.60  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             ceEEEEE-cCCCCCHHHHHHHHhCC
Q 038901           19 ERTVVLL-GRTGNGKSATGNSILGR   42 (107)
Q Consensus        19 ~~~i~li-G~nG~GKSTll~~l~g~   42 (107)
                      +++|++. +.-|+||||+.-.|+..
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~   26 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVA   26 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHH
Confidence            4788899 66999999998777543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.11  Score=31.68  Aligned_cols=26  Identities=27%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           18 GERTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      ..+++.+.|.=|+||||+.-.|+-..
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34778888999999999876665433

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.09  Score=29.06  Aligned_cols=19  Identities=32%  Similarity=0.295  Sum_probs=16.5

Q ss_pred             CceEEEEEcCCCCCHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll   36 (107)
                      +|....++||=.|||||-|
T Consensus         1 ~G~L~li~GpMfsGKTt~L   19 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTEL   19 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHH
T ss_pred             CcEEEEEEecccCHHHHHH
Confidence            4678889999999999966

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.81  E-value=0.11  Score=30.55  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=18.3

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHhCC
Q 038901           20 RTVVLL-GRTGNGKSATGNSILGR   42 (107)
Q Consensus        20 ~~i~li-G~nG~GKSTll~~l~g~   42 (107)
                      ++|++. +.-|+||||+.-.|+..
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~   25 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVA   25 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHH
Confidence            577888 77899999998776544

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.67  E-value=0.15  Score=28.50  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHH-HHH
Q 038901           15 PSNGERTVVLLGRTGNGKSATG-NSI   39 (107)
Q Consensus        15 ~~~~~~~i~liG~nG~GKSTll-~~l   39 (107)
                      +...|..-.|+||=.|||||-| +.+
T Consensus         3 ~~~~G~l~lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           3 PKDHGWVEVIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             CTTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcceeEEEEEeccccHHHHHHHHHH
Confidence            3456789999999999999965 444

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.58  E-value=0.13  Score=31.31  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 038901           20 RTVVLLGRTGNGKSATGNSILGRR   43 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~g~~   43 (107)
                      +.+.+.|.=|+||||+.-.|+-..
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcChHHHHHHHHHHHH
Confidence            677889999999999887776443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.14  E-value=0.22  Score=30.54  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=17.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ++|++-|.=|+||||+.-.|+
T Consensus         3 r~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            578889999999999875554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.66  E-value=0.26  Score=28.61  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 038901           22 VVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        22 i~liG~nG~GKSTll~~l~g~   42 (107)
                      +.|+|...||||.+...++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            679999999999999888754

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.45  E-value=0.071  Score=31.22  Aligned_cols=17  Identities=29%  Similarity=0.446  Sum_probs=14.7

Q ss_pred             ceEEEEEcCCCCCHHHH
Q 038901           19 ERTVVLLGRTGNGKSAT   35 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTl   35 (107)
                      |+.+.+..|+|+|||.-
T Consensus        38 G~dvii~a~TGSGKTla   54 (209)
T d1q0ua_          38 GESMVGQSQTGTGKTHA   54 (209)
T ss_dssp             TCCEEEECCSSHHHHHH
T ss_pred             CCCeEeeccccccccee
Confidence            56799999999999963

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.96  E-value=0.17  Score=29.78  Aligned_cols=18  Identities=28%  Similarity=0.335  Sum_probs=14.9

Q ss_pred             CceEEEEEcCCCCCHHHH
Q 038901           18 GERTVVLLGRTGNGKSAT   35 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTl   35 (107)
                      .|+.+.+..++|+|||.-
T Consensus        37 ~g~dvl~~A~TGsGKTla   54 (207)
T d1t6na_          37 LGMDVLCQAKSGMGKTAV   54 (207)
T ss_dssp             TTCCEEEECCTTSCHHHH
T ss_pred             cCCCeEEEeccccccccc
Confidence            357799999999999853

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.89  E-value=0.3  Score=28.55  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=15.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038901           20 RTVVLLGRTGNGKSATGNSIL   40 (107)
Q Consensus        20 ~~i~liG~nG~GKSTll~~l~   40 (107)
                      ....|..|+|+|||-++-.++
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~  106 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAI  106 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHH
T ss_pred             CCcEEEeCCCCCceehHHhHH
Confidence            456788999999996654333

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=85.92  E-value=0.17  Score=28.60  Aligned_cols=23  Identities=39%  Similarity=0.372  Sum_probs=17.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038901           19 ERTVVLLGRTGNGKSATGNSILG   41 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g   41 (107)
                      .+.++|+|-+||==++.++.|..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~   24 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIER   24 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHc
Confidence            37899999999855555677754

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.72  E-value=0.25  Score=29.12  Aligned_cols=19  Identities=26%  Similarity=0.372  Sum_probs=15.6

Q ss_pred             CceEEEEEcCCCCCHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll   36 (107)
                      .|+.+.+..++|+|||..+
T Consensus        46 ~g~dvl~~a~TGsGKT~a~   64 (212)
T d1qdea_          46 EGHDVLAQAQSGTGKTGTF   64 (212)
T ss_dssp             TTCCEEEECCTTSSHHHHH
T ss_pred             cCCCEEeecccccchhhhh
Confidence            3577999999999999543

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.07  E-value=0.22  Score=29.73  Aligned_cols=16  Identities=38%  Similarity=0.663  Sum_probs=14.1

Q ss_pred             ceEEEEEcCCCCCHHH
Q 038901           19 ERTVVLLGRTGNGKSA   34 (107)
Q Consensus        19 ~~~i~liG~nG~GKST   34 (107)
                      |+.+.+..++|+|||-
T Consensus        54 g~dvi~~a~TGSGKTl   69 (222)
T d2j0sa1          54 GRDVIAQSQSGTGKTA   69 (222)
T ss_dssp             TCCEEEECCTTSSHHH
T ss_pred             CCCeEEEcCcchhhhh
Confidence            5778899999999995

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=0.11  Score=30.22  Aligned_cols=19  Identities=32%  Similarity=0.377  Sum_probs=15.6

Q ss_pred             ceEEEEEcCCCCCHHHHHH
Q 038901           19 ERTVVLLGRTGNGKSATGN   37 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~   37 (107)
                      |+.+.++-|+|+|||-.+-
T Consensus        40 g~~vlv~apTGsGKT~~~~   58 (206)
T d1oywa2          40 GRDCLVVMPTGGGKSLCYQ   58 (206)
T ss_dssp             TCCEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhh
Confidence            5678899999999997653

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=84.51  E-value=0.24  Score=29.79  Aligned_cols=17  Identities=35%  Similarity=0.628  Sum_probs=15.0

Q ss_pred             CceEEEEEcCCCCCHHH
Q 038901           18 GERTVVLLGRTGNGKSA   34 (107)
Q Consensus        18 ~~~~i~liG~nG~GKST   34 (107)
                      .|+.+.+..++|+|||.
T Consensus        57 ~g~dvvi~a~TGsGKTl   73 (238)
T d1wrba1          57 EHRDIMACAQTGSGKTA   73 (238)
T ss_dssp             TTCCEEEECCTTSSHHH
T ss_pred             CCCCEEEECCCCCCcce
Confidence            36789999999999996

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.37  E-value=0.21  Score=29.29  Aligned_cols=17  Identities=29%  Similarity=0.571  Sum_probs=14.6

Q ss_pred             CceEEEEEcCCCCCHHH
Q 038901           18 GERTVVLLGRTGNGKSA   34 (107)
Q Consensus        18 ~~~~i~liG~nG~GKST   34 (107)
                      .|+.+.+..++|+|||.
T Consensus        39 ~g~dvl~~a~TGsGKTl   55 (206)
T d1veca_          39 SGRDILARAKNGTGKSG   55 (206)
T ss_dssp             TTCCEEEECCSSSTTHH
T ss_pred             cCCCEEeeccCcccccc
Confidence            35779999999999995

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.26  E-value=0.24  Score=29.43  Aligned_cols=17  Identities=35%  Similarity=0.548  Sum_probs=14.3

Q ss_pred             ceEEEEEcCCCCCHHHH
Q 038901           19 ERTVVLLGRTGNGKSAT   35 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTl   35 (107)
                      |..+.+..++|+|||--
T Consensus        49 g~dvl~~a~TGsGKTla   65 (218)
T d2g9na1          49 GYDVIAQAQSGTGKTAT   65 (218)
T ss_dssp             TCCEEEECCTTSSHHHH
T ss_pred             CCCEEEEcccchhhhhh
Confidence            56788999999999953

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=84.09  E-value=0.52  Score=27.04  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=17.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 038901           19 ERTVVLLGRTGNGKSATGNSILGRRA   44 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll~~l~g~~~   44 (107)
                      .++|+|.|-|  ||||+-+.|.....
T Consensus         2 ~kvI~VTGTn--GKTTt~~mi~~iL~   25 (214)
T d1gg4a4           2 ARVVALTGSS--GKTSVKEMTAAILS   25 (214)
T ss_dssp             CEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCC--cHHHHHHHHHHHHH
Confidence            4789999988  58988777654443

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.38  Score=28.14  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=18.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038901           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (107)
Q Consensus        17 ~~~~~i~liG~nG~GKSTll~~l~g~   42 (107)
                      ..-++|+|.|-|  ||||+-..|...
T Consensus         3 ~~~~vI~ITGT~--GKTTt~~~l~~i   26 (234)
T d1e8ca3           3 DNLRLVGVTGTN--GKTTTTQLLAQW   26 (234)
T ss_dssp             GSSEEEEEESSS--CHHHHHHHHHHH
T ss_pred             cCCeEEEEECCC--cHHHHHHHHHHH
Confidence            344789999988  899988887533

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=0.52  Score=29.52  Aligned_cols=19  Identities=32%  Similarity=0.384  Sum_probs=15.8

Q ss_pred             CceEEEEEcCCCCCHHHHH
Q 038901           18 GERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        18 ~~~~i~liG~nG~GKSTll   36 (107)
                      .+-.+.-.|++|+|||-+|
T Consensus        75 ~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          75 YNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCcceeeecccCCCCceec
Confidence            3467888999999999885

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.95  E-value=0.37  Score=28.07  Aligned_cols=18  Identities=28%  Similarity=0.469  Sum_probs=14.9

Q ss_pred             ceEEEEEcCCCCCHHHHH
Q 038901           19 ERTVVLLGRTGNGKSATG   36 (107)
Q Consensus        19 ~~~i~liG~nG~GKSTll   36 (107)
                      |+.+.+..++|+|||...
T Consensus        38 g~dvi~~a~tGsGKTlay   55 (206)
T d1s2ma1          38 GRDILARAKNGTGKTAAF   55 (206)
T ss_dssp             TCCEEEECCTTSCHHHHH
T ss_pred             CCCEEEecCCcchhhhhh
Confidence            466899999999999544

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.57  E-value=0.53  Score=30.29  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=16.8

Q ss_pred             CCCceEEEEEc--CCCCCHHHHH
Q 038901           16 SNGERTVVLLG--RTGNGKSATG   36 (107)
Q Consensus        16 ~~~~~~i~liG--~nG~GKSTll   36 (107)
                      .++|++.-+.|  ||+||||+|.
T Consensus        13 ~P~g~~~yvaaAFPSaCGKTnlA   35 (363)
T d1khba1          13 NPEGEKKYLAAAFPSACGKTNLA   35 (363)
T ss_dssp             CTTSCEEEEEEECCTTSCHHHHH
T ss_pred             CCCCCEEEEEEecCccccchhHH
Confidence            44577788887  7999999984