Citrus Sinensis ID: 038912

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MFRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKNYYLKPKLNKCPSRKNHGLKVGWPCEVDDIEL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHcccHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfrtrsifslpDELLSEILARVGACSLDDLlnaglscklfneitfdKYVLRQASiekipampwhknysFLEKCrdsgnpealyKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLckddedddnesnqkgMQHLDKVYRAKRLSQCRNKLQSITQTLWKNyylkpklnkcpsrknhglkvgwpcevddiel
Flexible Loop (DISEMBL)
mfrtrsifslpdELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIekipampwHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKNYYLKPKlnkcpsrknhglkvgwpcevddiel
Low Complexity Region (SEG)
MFRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKNYYLKPKLNKCPSRKNHGLKVGWPCEVDDIEL
Disordered region (IsUnstruct)
******IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCK******************KVYRAKRLSQCRNKLQSITQTLWKNYYLKPKLNKCPSRKNHGLKVGWPCEV*****
Disordered Region (DISOPRED)
*******FSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKNYYLKPKLNKCPSRKNHGLKVGWPC*******
Disordered Region (DISEMBL)
MFRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKNYYLKPKLNKCPSRKNHGLKVGWPCEVDDIEL
Disordered Region (DISPRO)
***TRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKNYYLKPKLNKCPSRKNHGLKV*WPC*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLWKNYYLKPKLNKCPSRKNHGLKVGWPCEVDDIEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9FXC7	296	Putative F-box protein At	yes	no	0.768	0.516	0.351	1e-19
Q1PEW8	163	F-box protein At2g35280 O	no	no	0.613	0.748	0.282	1e-10
Q9FYF9	379	F-box protein At1g67340 O	no	no	0.567	0.298	0.330	4e-09
Q9FK27	336	F-box protein At5g50450 O	no	no	0.562	0.333	0.299	7e-06

>sp|Q9FXC7|FB79_ARATH Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=4 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 9   SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYS 68
           SLP++LL EI +  GA SL  + N  L  K F  I  +KYV  + S+++I  +PWH+N +
Sbjct: 26  SLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSA 85

Query: 69  -FLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDD 127
            F+E+C +S NPEAL+++G + +F     + G+ YL  A + G   A Y+ GVI +C   
Sbjct: 86  KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILICL-- 143

Query: 128 EDDDNESNQKGMQHLDKVYR------AKRLSQCRNKLQSITQTLW 166
                ++ QKG + L  V +         L + R K+Q I    W
Sbjct: 144 ---GGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFW 185

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEW8|FB127_ARATH F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 2/124 (1%)

Query: 9   SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPW--HKN 66
           +LP +LL EI+A++G  S +D  N  LSCK       D+ VL+  ++  +   P    K+
Sbjct: 13  ALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCRKH 72

Query: 67  YSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKD 126
              ++KC  + NP+A Y +G++ +F+  + +  + ++ IA   G   A Y+  ++ LC+ 
Sbjct: 73  LLIMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHIGIAANGGQKEAIYMYAMLLLCRG 132

Query: 127 DEDD 130
             ++
Sbjct: 133 RTEE 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYF9|FB76_ARATH F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 9   SLPDELLSEILARVGACSL--DDLLNAGLSCKLFNEITFDKYVLRQASIEKIP--AMPWH 64
           S+PD+L+  IL ++G+ S    D +N  L+CK    +  +  VL + S + I   A  W 
Sbjct: 46  SIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWS 105

Query: 65  K-NYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVI 121
           + ++ FL++C D+G+ EA Y  G++ F+   N   G + +  A  S H  A Y L VI
Sbjct: 106 EYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVI 163

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK27|FB342_ARATH F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 10  LPDELLSEILARVG--ACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK--IPAMPWH- 64
           L D+L+  IL ++   A S  D L    +CK  N +     VL +A  +   + A  W  
Sbjct: 25  LHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEKWSD 84

Query: 65  KNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVI 121
            ++ FL+ C ++GN +A Y  G++ F+   N  +G + +  A    H  A Y L VI
Sbjct: 85  SSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
147773103	241	hypothetical protein VITISV_039291 [Viti	0.788	0.651	0.430	1e-32
224122932	238	predicted protein [Populus trichocarpa]	0.763	0.638	0.396	2e-29
255547876	182	conserved hypothetical protein [Ricinus	0.713	0.780	0.410	1e-23
449517999	246	PREDICTED: putative F-box protein At1g67	0.768	0.621	0.333	2e-21
449439561	260	PREDICTED: putative F-box protein At1g67	0.768	0.588	0.327	5e-21
297838503	248	hypothetical protein ARALYDRAFT_894509 [	0.778	0.625	0.357	5e-19
297842229	289	predicted protein [Arabidopsis lyrata su	0.788	0.543	0.329	7e-19
15220485	296	putative F-box protein [Arabidopsis thal	0.768	0.516	0.351	8e-18
449532447	240	PREDICTED: putative F-box protein At1g67	0.788	0.654	0.312	1e-17
449435498	255	PREDICTED: putative F-box protein At1g67	0.788	0.615	0.312	1e-17

>gi|147773103|emb|CAN71689.1| hypothetical protein VITISV_039291 [Vitis vinifera]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 109/165 (66%), Gaps = 8/165 (4%)

Query: 6   SIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHK 65
           +I SL  +LL E+L RV + S  DL NA LSC+ F E + D +V++  SIEK P +PW +
Sbjct: 14  TIESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWWQ 73

Query: 66  N----YSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVI 121
                 SFL+ C++SGNPE LY+QG++EFFS+  +E+   YL  A + GH+ ASY+ G+I
Sbjct: 74  VKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGII 133

Query: 122 FLCKDDEDDDNESNQKGMQHLDKVYRAKRLSQCRNKLQSITQTLW 166
            LCK    D NE  ++GM+ L+ V ++++L +CR + ++ T ++W
Sbjct: 134 LLCKG--GDSNE--EQGMKLLNAVKKSRKLGECRKRTRAFTLSMW 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122932|ref|XP_002318952.1| predicted protein [Populus trichocarpa] gi|222857328|gb|EEE94875.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 101/164 (61%), Gaps = 12/164 (7%)

Query: 10  LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPW---HKN 66
            P +LL+E+LARV + S+ DL  A LSCK F E   + Y+    +IEK+P +PW   H  
Sbjct: 17  FPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPVIPWRISHGA 76

Query: 67  YSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKD 126
            SFL +C+++GNPEAL++QG+VEFFS +  E+G  +L  A + GH+ A Y  GVI +C  
Sbjct: 77  SSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVC-- 134

Query: 127 DEDDDNESNQKGMQHLDKV----YRAKRLSQCRNKLQSITQTLW 166
                 +  Q+G++ L  +     R + + +CR+K++ I Q++W
Sbjct: 135 ---HGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMW 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547876|ref|XP_002514995.1| conserved hypothetical protein [Ricinus communis] gi|223546046|gb|EEF47549.1| conserved hypothetical protein [Ricinus communis]

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 14/156 (8%)

Query: 10  LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKN--- 66
           +P ELL+EILARV + S  D  NA  +CK F E   D Y+ + ASI+  P +PW      
Sbjct: 25  MPRELLTEILARVASESFTDFFNAKTTCKEFLEAASDDYIFKHASIDCFPVIPWKITDDA 84

Query: 67  YSFLEKCRDSGNPEALYKQGVVEFFSYSNLE--AGVAYLDIATKSGHLGASYILGVIFLC 124
            +FL+KC+ S NPE+L++QG++++FS + LE  +G+ YL  AT  GH  A+Y+ G+I  C
Sbjct: 85  STFLDKCKKSENPESLFRQGMIDYFS-TTLEKNSGLDYLKRATNKGHRVATYVYGIILAC 143

Query: 125 KDDEDDDNESNQKGMQHLDKVYRAKR---LSQCRNK 157
                 D E  QKG++ L K+  +K    +++CR K
Sbjct: 144 Y-----DGELRQKGLKLLAKLVESKSSLIVNECREK 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517999|ref|XP_004166031.1| PREDICTED: putative F-box protein At1g67623-like, partial [Cucumis sativus]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 100/165 (60%), Gaps = 12/165 (7%)

Query: 7   IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWH-- 64
           I SLP++LL+E+LA+V   S  DL+ A L+ K F E + D+Y+ + AS+     + W+  
Sbjct: 34  IKSLPNDLLTEVLAKVATSSYIDLVQAKLATKHFLEASNDRYIFQHASLGNFRNLLWNNS 93

Query: 65  -KNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFL 123
            K +SF+E C +S NPE+LY++G++EFF++    +G+AYL  + + G++ A Y+ GVI  
Sbjct: 94  PKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILY 153

Query: 124 CKDDEDDDNESNQKGMQHL--DKVYRAKRLSQCRNKLQSITQTLW 166
             + +D+       G++ L  ++V    ++ +CR +++     +W
Sbjct: 154 ASNLKDE-------GLEFLKNNEVKLGNKMIECRQRVKEFVSYIW 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439561|ref|XP_004137554.1| PREDICTED: putative F-box protein At1g67623-like [Cucumis sativus]

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 99/165 (60%), Gaps = 12/165 (7%)

Query: 7   IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWH-- 64
           I SLP++LL+E+LA+V   S  DL+ A L+ K F E + D+Y+ +  S+     + W+  
Sbjct: 34  IKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHVSLGNFRNLLWNNS 93

Query: 65  -KNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFL 123
            K +SF+E C +S NPE+LY++G++EFF++    +G+AYL  + + G++ A Y+ GVI  
Sbjct: 94  PKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILY 153

Query: 124 CKDDEDDDNESNQKGMQHL--DKVYRAKRLSQCRNKLQSITQTLW 166
             + +D+       G++ L  ++V    ++ +CR +++     +W
Sbjct: 154 ASNLKDE-------GLEFLKNNEVKLGNKMIECRQRVKEFVSYIW 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838503|ref|XP_002887133.1| hypothetical protein ARALYDRAFT_894509 [Arabidopsis lyrata subsp. lyrata] gi|297332974|gb|EFH63392.1| hypothetical protein ARALYDRAFT_894509 [Arabidopsis lyrata subsp. lyrata]

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 13/168 (7%)

Query: 9   SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYS 68
           SLP++LL EI +  GA SL  + N  +  K F  I  ++YV  + S+++I   PWH+N  
Sbjct: 25  SLPEDLLVEISSCTGASSLSAVRNLRVVSKSFRRICDERYVFYRLSLKEIDYPPWHQNSE 84

Query: 69  -FLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDD 127
            F E+CR+SGNPEALY++G + +F  +    G+ YL  A + G+  A+Y+ G+I +C  D
Sbjct: 85  YFFERCRNSGNPEALYRKGFMNYFRDNLKHEGLKYLAEAAEKGNREANYVYGLILICLGD 144

Query: 128 EDDDNESNQKGMQHLDKVYR------AKRLSQCRNKLQSITQT-LWKN 168
                ++ QKG++ L  V +       + L + R K++ I  + LW N
Sbjct: 145 -----KTKQKGLKILSSVIKPLMSTTMEELVELRYKIKKIRDSVLWPN 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842229|ref|XP_002888996.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334837|gb|EFH65255.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 16/173 (9%)

Query: 5   RSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWH 64
           R  +SLP++LL EI + V A SL ++ N  L  K F  I+ D+YVLR+ S+ +IP  PW 
Sbjct: 54  RDQYSLPEDLLVEISSCVAASSLSEISNLRLVSKSFKRISNDRYVLRRLSLNEIPLFPWF 113

Query: 65  KN----YSFLEKCRDSGNPEALYKQGVVEFF----SYSNLEAGVAYLDIATKSGHLGASY 116
           +N    ++F+++CR +GNPEA+Y++G+V++F    S    + G+ ++      G+  A Y
Sbjct: 114 RNRGKFHNFIKRCRKNGNPEAIYRKGLVDYFHRNSSKRQRDKGLKHIAKVANKGNQEAQY 173

Query: 117 ILGVIFLCKDDEDDDNESNQKG---MQHLDKVYRAKRLSQCRNKLQSITQTLW 166
           + G+I +C        E+ QKG   +  L K   +  L +     + I   +W
Sbjct: 174 VYGLILICL-----GGETKQKGFKILSSLRKPLMSSTLEEMEKHRKKIRNEMW 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220485|ref|NP_176929.1| putative F-box protein [Arabidopsis thaliana] gi|75263152|sp|Q9FXC7.1|FB79_ARATH RecName: Full=Putative F-box protein At1g67623 gi|11072021|gb|AAG28900.1|AC008113_16 F12A21.25 [Arabidopsis thaliana] gi|332196551|gb|AEE34672.1| putative F-box protein [Arabidopsis thaliana]

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 9   SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYS 68
           SLP++LL EI +  GA SL  + N  L  K F  I  +KYV  + S+++I  +PWH+N +
Sbjct: 26  SLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSA 85

Query: 69  -FLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDD 127
            F+E+C +S NPEAL+++G + +F     + G+ YL  A + G   A Y+ GVI +C   
Sbjct: 86  KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILICL-- 143

Query: 128 EDDDNESNQKGMQHLDKVYR------AKRLSQCRNKLQSITQTLW 166
                ++ QKG + L  V +         L + R K+Q I    W
Sbjct: 144 ---GGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFW 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532447|ref|XP_004173192.1| PREDICTED: putative F-box protein At1g67623-like, partial [Cucumis sativus]

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 101/173 (58%), Gaps = 16/173 (9%)

Query: 2   FRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK--IP 59
           F +  I SLP++LL E+LA+V A S  DL+ A L+ KLF   + D Y+ +  S+E     
Sbjct: 28  FSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFR 87

Query: 60  AMPWH---KNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASY 116
            + W+   ++ SF+E   ++ NPE+LY++G +EFFS+    +G++YL  + + G++ A Y
Sbjct: 88  NLLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACY 147

Query: 117 ILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAK---RLSQCRNKLQSITQTLW 166
           + GV+    + +++       G+++L K+  AK   ++++CR +++      W
Sbjct: 148 VYGVVMYAANLKEE-------GVEYL-KMCEAKLGNKMAECRRRVKEFVWYFW 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435498|ref|XP_004135532.1| PREDICTED: putative F-box protein At1g67623-like [Cucumis sativus]

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 101/173 (58%), Gaps = 16/173 (9%)

Query: 2   FRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK--IP 59
           F +  I SLP++LL E+LA+V A S  DL+ A L+ KLF   + D Y+ +  S+E     
Sbjct: 28  FSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFR 87

Query: 60  AMPWH---KNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASY 116
            + W+   ++ SF+E   ++ NPE+LY++G +EFFS+    +G++YL  + + G++ A Y
Sbjct: 88  NLLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACY 147

Query: 117 ILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAK---RLSQCRNKLQSITQTLW 166
           + GV+    + +++       G+++L K+  AK   ++++CR +++      W
Sbjct: 148 VYGVVMYAANLKEE-------GVEYL-KMCEAKLGNKMAECRRRVKEFVWYFW 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2824055	296	AT1G67623 "AT1G67623" [Arabido	0.768	0.516	0.351	1.7e-20
TAIR|locus:5019474674	243	AT1G74875 "AT1G74875" [Arabido	0.809	0.662	0.276	6.9e-15
TAIR|locus:2063454	163	AT2G35280 "AT2G35280" [Arabido	0.587	0.717	0.294	1.9e-12
TAIR|locus:2019604	379	AT1G67340 "AT1G67340" [Arabido	0.567	0.298	0.330	3.8e-10
TAIR|locus:2093325	114	AT3G30430 "AT3G30430" [Arabido	0.487	0.850	0.313	5.2e-10
TAIR|locus:2177522	336	AT5G50450 [Arabidopsis thalian	0.562	0.333	0.299	3.3e-06
TAIR|locus:2006847	384	AT1G14800 "AT1G14800" [Arabido	0.527	0.273	0.252	0.00098

TAIR|locus:2824055 AT1G67623 "AT1G67623" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 58/165 (35%), Positives = 89/165 (53%)

Query:     9 SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWHKNYS 68
             SLP++LL EI +  GA SL  + N  L  K F  I  +KYV  + S+++I  +PWH+N +
Sbjct:    26 SLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSA 85

Query:    69 -FLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDD 127
              F+E+C +S NPEAL+++G + +F     + G+ YL  A + G   A Y+ GVI +C   
Sbjct:    86 KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILICLG- 144

Query:   128 EDDDNESNQKGMQHLDKVYRA------KRLSQCRNKLQSITQTLW 166
                  ++ QKG + L  V +         L + R K+Q I    W
Sbjct:   145 ----GKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFW 185

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474674 AT1G74875 "AT1G74875" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 49/177 (27%), Positives = 89/177 (50%)

Query:    18 ILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPWH---KNYSFLEKCR 74
             ++  V + SL +  N  L  K F  I+ D+Y+L++ S+ KIP +PW    K ++F ++CR
Sbjct:    23 LVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHNFFKRCR 82

Query:    75 DSGNPEALYKQGVVEFFSYSNLEA----GVAYLDIATKSGHLGASYILGVIFLCKDDEDD 130
              SGN EA+Y++G+V++F   + E     G+ ++     +G+  A Y+ G+I +C      
Sbjct:    83 KSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILICLG---- 138

Query:   131 DNESNQKGMQHLDKVYRAKRLSQCRNKLQS----ITQTLWKNYYLKPKLNKCPSRKN 183
               ++ Q G + L  + +   LS    +++     I    W    +   L K   R+N
Sbjct:   139 -GKTKQNGFKILSSLRKPLMLSNTIKEMEKHRTHIRNMWWWGEPMMRHLQKSYVREN 194

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063454 AT2G35280 "AT2G35280" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/119 (29%), Positives = 65/119 (54%)

Query:     9 SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPW--HKN 66
             +LP +LL EI+A++G  S +D  N  LSCK       D+ VL+  ++  +   P    K+
Sbjct:    13 ALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCRKH 72

Query:    67 YSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFLCK 125
                ++KC  + NP+A Y +G++ +F+  + +  + ++ IA   G   A Y+  ++ LC+
Sbjct:    73 LLIMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHIGIAANGGQKEAIYMYAMLLLCR 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019604 AT1G67340 "AT1G67340" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 39/118 (33%), Positives = 63/118 (53%)

Query:     9 SLPDELLSEILARVGACSL--DDLLNAGLSCKLFNEITFDKYVLRQASIEKIP--AMPWH 64
             S+PD+L+  IL ++G+ S    D +N  L+CK    +  +  VL + S + I   A  W 
Sbjct:    46 SIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWS 105

Query:    65 K-NYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVI 121
             + ++ FL++C D+G+ EA Y  G++ F+   N   G + +  A  S H  A Y L VI
Sbjct:   106 EYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVI 163

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2093325 AT3G30430 "AT3G30430" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 31/99 (31%), Positives = 56/99 (56%)

Query:    10 LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPAMPW--HKNY 67
             LP +LL EI+A++GA   +D  N  LSCK       D+ VL+  ++  +   P    K+ 
Sbjct:    14 LPQDLLGEIVAKIGAKYAEDYHNCILSCKELGASANDERVLKTLNLAPLVKKPLSCRKHL 73

Query:    68 SFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIA 106
               ++KC  + NP+A Y +G++ +F+  + + G+ ++ IA
Sbjct:    74 LIMKKCLANNNPDAHYIKGIIWYFNLDHCDVGLHHIGIA 112

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177522 AT5G50450 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 35/117 (29%), Positives = 56/117 (47%)

Query:    10 LPDELLSEILARVG--ACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK--IPAMPWH- 64
             L D+L+  IL ++   A S  D L    +CK  N +     VL +A  +   + A  W  
Sbjct:    25 LHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEKWSD 84

Query:    65 KNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVI 121
              ++ FL+ C ++GN +A Y  G++ F+   N  +G + +  A    H  A Y L VI
Sbjct:    85 SSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2006847 AT1G14800 "AT1G14800" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 0.00098, P = 0.00098
 Identities = 27/107 (25%), Positives = 51/107 (47%)

Query:    46 DKYVLRQASIEKIPAMPW--HKNYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYL 103
             D+ VL+  ++  +   P    K++  ++KC  + NP+A Y +G++ +F+  + + G+ ++
Sbjct:   272 DERVLKTLNLAPLVKKPLSCRKHHLIMKKCLANNNPDAHYIKGIIWYFNLDHCDVGLHHI 331

Query:   104 DIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAKR 150
              IA   G   A YI  V         D N    K  + +   +R KR
Sbjct:   332 GIAANGGQKEAIYIPVVFGEINQVGTDSNRKIAKRFKRVHDEFRFKR 378


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       199   0.00085  111 3  11 22  0.48    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.52u 0.13s 20.65t   Elapsed:  00:00:01
  Total cpu time:  20.52u 0.13s 20.65t   Elapsed:  00:00:01
  Start:  Fri May 10 00:39:02 2013   End:  Fri May 10 00:39:03 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam12937	47	pfam12937, F-box-like, F-box-like	5e-05

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 39.0 bits (92), Expect = 5e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 7  IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFD 46
          +  LPDE+L +I + +      DLL   L C+ + E+  D
Sbjct: 1  LSDLPDEILLQIFSYL---DPRDLLRLALVCRRWRELASD 37

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.1
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.66
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.25
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.67
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.73
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	91.76
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	91.41
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.7
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	89.66
PRK11906	458	transcriptional regulator; Provisional	83.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	83.1
PRK15359	144	type III secretion system chaperone protein SscB;	81.86
KOG1550	552	consensus Extracellular protein SEL-1 and related	81.62

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.10  E-value=2.3e-06  Score=55.67  Aligned_cols=46  Identities=37%  Similarity=0.596  Sum_probs=38.8

Q ss_pred             CCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccc
Q 038912            7 IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASI   55 (199)
Q Consensus         7 ~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl   55 (199)
                      +..||+|++.+|++.+   ++.|+.++.++||++++++.++.+.+++.+
T Consensus         1 i~~LP~Eil~~If~~L---~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL---DPRDLLRLSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS----HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence            5689999999999876   888999999999999999999888887643

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.66  E-value=7.9e-05  Score=45.93  Aligned_cols=40  Identities=28%  Similarity=0.408  Sum_probs=36.4

Q ss_pred             CChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhh
Q 038912           10 LPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQ   52 (199)
Q Consensus        10 LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~   52 (199)
                      ||+|++.+|+..+   ++.|+.++.++||+|+.++.++.+.++
T Consensus         1 lP~~ll~~I~~~l---~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKL---PPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999988   579999999999999999999887653

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.25  E-value=0.00014  Score=46.86  Aligned_cols=42  Identities=31%  Similarity=0.472  Sum_probs=35.4

Q ss_pred             CCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhh
Q 038912            7 IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLR   51 (199)
Q Consensus         7 ~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~   51 (199)
                      |..||+|++.+|+.++   ++.|+.++.++||+++.++.+.....
T Consensus         3 ~~~LP~~il~~Il~~l---~~~~~~~l~~vsk~~~~~~~~~~~~~   44 (48)
T PF00646_consen    3 LSDLPDEILQEILSYL---DPKDLLRLSLVSKRWRSLVDSPRLWK   44 (48)
T ss_dssp             HHHS-HHHHHHHHHTS----HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred             HHHCCHHHHHHHHHHC---cHHHHHHHHHHhhHHHHHHcCCCccH
Confidence            5679999999999998   88999999999999999999887654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.67  E-value=0.0076  Score=57.91  Aligned_cols=78  Identities=22%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             chHHHHHHHhcCCccchHHHHHHHHhcc--CChHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 038912           66 NYSFLEKCRDSGNPEALYKQGVVEFFSY--SNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLD  143 (199)
Q Consensus        66 ~~~FlkrC~~aGNpeA~Y~~Gm~~~f~~--~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~  143 (199)
                      +..+++++.+.|||+|+|.+|...+...  ++...+.++...||..||..|.|-+++....-.+.+.   ...+++.++.
T Consensus       312 A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r---~~~~A~~~~k  388 (552)
T KOG1550|consen  312 ALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVER---NLELAFAYYK  388 (552)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCC---CHHHHHHHHH
Confidence            4688999999999999999999999998  7778999999999999999999999999994444444   3456666666


Q ss_pred             HHh
Q 038912          144 KVY  146 (199)
Q Consensus       144 ~l~  146 (199)
                      +.-
T Consensus       389 ~aA  391 (552)
T KOG1550|consen  389 KAA  391 (552)
T ss_pred             HHH
Confidence            553

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.99  E-value=0.0058  Score=55.85  Aligned_cols=50  Identities=32%  Similarity=0.416  Sum_probs=46.3

Q ss_pred             CCCCChHHHHHHHHHhcc--CCHHHHHHHHHhcHhHHHhhcchhHhhhcccc
Q 038912            7 IFSLPDELLSEILARVGA--CSLDDLLNAGLSCKLFNEITFDKYVLRQASIE   56 (199)
Q Consensus         7 ~~~LpdDLlv~I~~kVA~--~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~   56 (199)
                      |..||||+|..|+++|-+  -++.+|.++-++||-|...+.||.+.+.+.++
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K  158 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK  158 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence            678999999999999986  48999999999999999999999999988764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=0.065  Score=49.31  Aligned_cols=46  Identities=28%  Similarity=0.431  Sum_probs=40.4

Q ss_pred             CCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccc
Q 038912            7 IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASI   55 (199)
Q Consensus         7 ~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl   55 (199)
                      +++|||+++..|++.+   +--||..+...||||.+++.|........+
T Consensus        98 ~~slpDEill~IFs~L---~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl  143 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCL---CKKELLKVSGVCKRFYRLASDESLWQTLDL  143 (419)
T ss_pred             cccCCHHHHHHHHHhc---cHHHHHHHHHHHHHHhhccccccceeeecc
Confidence            7899999999999998   778999999999999999998776665443

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=91.76  E-value=0.23  Score=29.80  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=23.8

Q ss_pred             ccchHHHHHHHHhccCC------hHHHHHHHHHHHhcCC
Q 038912           79 PEALYKQGVVEFFSYSN------LEAGVAYLDIATKSGH  111 (199)
Q Consensus        79 peA~Y~~Gm~~~f~~~~------~~~Gl~lL~~AA~~gh  111 (199)
                      |+|+|..|+..+|..+.      .+.++.++.+|+..||
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence            67888899555444443      4799999999998886

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=91.41  E-value=1.2  Score=38.26  Aligned_cols=58  Identities=26%  Similarity=0.406  Sum_probs=50.3

Q ss_pred             hHHHHHHHhcCCccchHHHHHHHHhcc---CChHHHHHHHHHHHhcCChhH---HHHHHHHHHh
Q 038912           67 YSFLEKCRDSGNPEALYKQGVVEFFSY---SNLEAGVAYLDIATKSGHLGA---SYILGVIFLC  124 (199)
Q Consensus        67 ~~FlkrC~~aGNpeA~Y~~Gm~~~f~~---~~~~~Gl~lL~~AA~~gh~~A---~Y~~~ml~~c  124 (199)
                      ..++..-.+.|+|+++|..|.....-.   ++...+..++.+||..||.+|   .|.++.+..-
T Consensus        97 ~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~  160 (292)
T COG0790          97 ADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS  160 (292)
T ss_pred             HHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Confidence            467778899999999999999998854   467999999999999999999   8888887773

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.70  E-value=1.6  Score=37.34  Aligned_cols=77  Identities=21%  Similarity=0.306  Sum_probs=47.2

Q ss_pred             cchHHHHHHHhcCCccc---hHHHHHHHHhcc---C---ChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhh
Q 038912           65 KNYSFLEKCRDSGNPEA---LYKQGVVEFFSY---S---NLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNES  134 (199)
Q Consensus        65 ~~~~FlkrC~~aGNpeA---~Y~~Gm~~~f~~---~---~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~  134 (199)
                      .+..++.+-++.||++|   +|..|.......   .   +...++..+.+|+..||..|-+.+|.+.. +.|.++    .
T Consensus       131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~----d  206 (292)
T COG0790         131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPR----D  206 (292)
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCc----C
Confidence            34567777777777777   777776655541   1   11357777777777777777777776666 434332    2


Q ss_pred             HHHHHHHHHHH
Q 038912          135 NQKGMQHLDKV  145 (199)
Q Consensus       135 ~~~g~~~~~~l  145 (199)
                      -+++++.+...
T Consensus       207 ~~~A~~wy~~A  217 (292)
T COG0790         207 LKKAFRWYKKA  217 (292)
T ss_pred             HHHHHHHHHHH
Confidence            34455555433

>smart00671 SEL1 Sel1-like repeats

Probab=89.66  E-value=0.67  Score=27.14  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=25.9

Q ss_pred             ccchHHHHHHHHhcc---CChHHHHHHHHHHHhcCC
Q 038912           79 PEALYKQGVVEFFSY---SNLEAGVAYLDIATKSGH  111 (199)
Q Consensus        79 peA~Y~~Gm~~~f~~---~~~~~Gl~lL~~AA~~gh  111 (199)
                      |+|+|..|...+...   +|.+.++.++.+||..||
T Consensus         1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence            567888887776643   477899999999998775

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PRK11906 transcriptional regulator; Provisional

Probab=83.19  E-value=3.5  Score=39.45  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=58.6

Q ss_pred             HHHHHH--HhcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 038912           68 SFLEKC--RDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLD  143 (199)
Q Consensus        68 ~FlkrC--~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~  143 (199)
                      +...|-  ++.+||-|.++.|....+..+ .+.|..++++|-.  +-.+.|.|.+|.+++.+|..       ++|++++.
T Consensus       325 ~~A~rAveld~~Da~a~~~~g~~~~~~~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~-------~~a~~~i~  396 (458)
T PRK11906        325 ELLDYVSDITTVDGKILAIMGLITGLSGQ-AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI-------EEARICID  396 (458)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhhcc-hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-------HHHHHHHH
Confidence            455553  467899999999999999888 8999999999764  45799999999999999975       88999888


Q ss_pred             HH
Q 038912          144 KV  145 (199)
Q Consensus       144 ~l  145 (199)
                      +-
T Consensus       397 ~a  398 (458)
T PRK11906        397 KS  398 (458)
T ss_pred             HH
Confidence            73

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=83.10  E-value=3.8  Score=27.16  Aligned_cols=62  Identities=23%  Similarity=0.452  Sum_probs=47.7

Q ss_pred             CccchHHHHHHHHhccCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912           78 NPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY  146 (199)
Q Consensus        78 NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~  146 (199)
                      |+++.+.+|...+ ..++-+.++..+.+|..-  .+..+.|.+|.+....|.      ..+++++++.+..
T Consensus         2 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~------~~~~A~~~~~~al   65 (69)
T PF13414_consen    2 NAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK------DYEEAIEDFEKAL   65 (69)
T ss_dssp             SHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc------cHHHHHHHHHHHH
Confidence            6788888897654 577889999999998754  578999999999998882      2366777766543

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=81.86  E-value=7.1  Score=30.58  Aligned_cols=75  Identities=8%  Similarity=-0.010  Sum_probs=56.6

Q ss_pred             cchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912           65 KNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQ  140 (199)
Q Consensus        65 ~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~  140 (199)
                      .+..++.+.+.  -.|+++.+..|.... ..++.+.++..+.+|..  +++..+.|-+|+.+...|..       +++++
T Consensus        42 ~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~-------~eAi~  113 (144)
T PRK15359         42 RAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP-------GLARE  113 (144)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-------HHHHH
Confidence            34455555444  467888888887644 46777899999999775  57899999999999988865       77888


Q ss_pred             HHHHHhh
Q 038912          141 HLDKVYR  147 (199)
Q Consensus       141 ~~~~l~~  147 (199)
                      .+.+...
T Consensus       114 ~~~~Al~  120 (144)
T PRK15359        114 AFQTAIK  120 (144)
T ss_pred             HHHHHHH
Confidence            8877653

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.62  E-value=4.2  Score=39.23  Aligned_cols=77  Identities=25%  Similarity=0.419  Sum_probs=62.5

Q ss_pred             hHHHHHHHhcCCccchHHHHHHHHhc----cCChHHHHHHHHHHHh-------cCChhHHHHHHHHHH-hcCCCCCChhh
Q 038912           67 YSFLEKCRDSGNPEALYKQGVVEFFS----YSNLEAGVAYLDIATK-------SGHLGASYILGVIFL-CKDDEDDDNES  134 (199)
Q Consensus        67 ~~FlkrC~~aGNpeA~Y~~Gm~~~f~----~~~~~~Gl~lL~~AA~-------~gh~~A~Y~~~ml~~-c~G~~~~d~~~  134 (199)
                      ..|++.-++.||..|.|..|...++-    .+|.+.++.+++.||.       .|+..|.|-+|.+.+ ..+..+.   .
T Consensus       232 ~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~---d  308 (552)
T KOG1550|consen  232 FKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI---D  308 (552)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc---c
Confidence            47899999999999999999999887    4577999999999998       899999999999999 4444321   4


Q ss_pred             HHHHHHHHHHHh
Q 038912          135 NQKGMQHLDKVY  146 (199)
Q Consensus       135 ~~~g~~~~~~l~  146 (199)
                      .+.+++++...-
T Consensus       309 ~~~A~~~~~~aA  320 (552)
T KOG1550|consen  309 YEKALKLYTKAA  320 (552)
T ss_pred             HHHHHHHHHHHH
Confidence            566666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.95
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.57
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.23
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	96.73
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.13
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.09
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.74
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.73
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.65
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	95.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	95.48
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	90.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	90.82
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	90.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	89.94
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	89.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	89.33
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	88.89
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	87.48
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	87.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	86.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	86.01
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	85.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	85.74
1pc2_A	152	Mitochondria fission protein; unknown function; NM	84.19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	83.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	83.24
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	82.57
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	82.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	81.94
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	80.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	80.41

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=97.95  E-value=4e-06  Score=54.61  Aligned_cols=47  Identities=32%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             cccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhc
Q 038912            4 TRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQA   53 (199)
Q Consensus         4 ~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~a   53 (199)
                      ...++.||+|++.+|++.+   ++.|+..+..+||++++++.++.+.+++
T Consensus         6 ~~~~~~LP~eil~~I~~~L---~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCL---CLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTS---CGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCHHHCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            4578999999999999998   5789999999999999999999887764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.68  E-value=0.00021  Score=53.74  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=63.2

Q ss_pred             cchHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHH
Q 038912           65 KNYSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQ  140 (199)
Q Consensus        65 ~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~  140 (199)
                      .+..++++..+.||++|+|..|+..+.-   .++.+.++.++.+|+..|+..|.|.+|++.. +.|.. .   ..+++++
T Consensus        43 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~-~---d~~~A~~  118 (138)
T 1klx_A           43 KLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVV-K---NEKQAVK  118 (138)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-C---CHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCC-c---CHHHHHH
Confidence            3567888999999999999999886552   6788999999999999999999999999998 55543 2   4567777


Q ss_pred             HHHHHh
Q 038912          141 HLDKVY  146 (199)
Q Consensus       141 ~~~~l~  146 (199)
                      ++.+.-
T Consensus       119 ~~~~Aa  124 (138)
T 1klx_A          119 TFEKAC  124 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.57  E-value=0.00024  Score=56.51  Aligned_cols=77  Identities=12%  Similarity=0.179  Sum_probs=47.5

Q ss_pred             CcchHHHHHHHhcCCccchHHHHHHHHhccC----ChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHH
Q 038912           64 HKNYSFLEKCRDSGNPEALYKQGVVEFFSYS----NLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKG  138 (199)
Q Consensus        64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~~~----~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g  138 (199)
                      +.+..++++.++.||++|+|..|+..+-  +    +.+.++.++.+|+..|+..|.|.+|.++. +.|..    ...+++
T Consensus        35 ~~A~~~~~~a~~~g~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~----~d~~~A  108 (212)
T 3rjv_A           35 QKAEYWAQKAAAQGDGDALALLAQLKIR--NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA----TDVAHA  108 (212)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTS--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSS----CCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCc----cCHHHH
Confidence            3444666666777777777777765332  4    55677777777777777777777777666 33322    134666


Q ss_pred             HHHHHHHh
Q 038912          139 MQHLDKVY  146 (199)
Q Consensus       139 ~~~~~~l~  146 (199)
                      ++++.+..
T Consensus       109 ~~~~~~A~  116 (212)
T 3rjv_A          109 ITLLQDAA  116 (212)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            66666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.31  E-value=0.00041  Score=55.15  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             CcchHHHHHHHhcCCccchHHHHHHHHh---ccCChHHHHHHHHHHHhcCC----hhHHHHHHHHHH-hcCCCCCChhhH
Q 038912           64 HKNYSFLEKCRDSGNPEALYKQGVVEFF---SYSNLEAGVAYLDIATKSGH----LGASYILGVIFL-CKDDEDDDNESN  135 (199)
Q Consensus        64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f---~~~~~~~Gl~lL~~AA~~gh----~~A~Y~~~ml~~-c~G~~~~d~~~~  135 (199)
                      +.+..++++.++.|+++|+|..|...+.   ..++.+.++.++.+|+..|+    +.|.|.+|++.. +.|..    ...
T Consensus        70 ~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~----~d~  145 (212)
T 3rjv_A           70 PQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP----EDD  145 (212)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS----CCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC----CCH
Confidence            3345677777788888888888766543   15566788888888887777    788888888777 44433    667


Q ss_pred             HHHHHHHHHHhh
Q 038912          136 QKGMQHLDKVYR  147 (199)
Q Consensus       136 ~~g~~~~~~l~~  147 (199)
                      ++++++|.+...
T Consensus       146 ~~A~~~~~~A~~  157 (212)
T 3rjv_A          146 VKASEYFKGSSS  157 (212)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777776653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.23  E-value=0.00095  Score=50.08  Aligned_cols=75  Identities=17%  Similarity=0.065  Sum_probs=59.2

Q ss_pred             chHHHHHHHhcCCccchHHHHHHHHhccCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHHHHHH
Q 038912           66 NYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQHLDK  144 (199)
Q Consensus        66 ~~~FlkrC~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~~~~~  144 (199)
                      +..++++..+.||++|+  .|+. |+.....+.++.++.+|+..|++.|.|.+|++.. +.|.. .   ..++++++|.+
T Consensus        14 A~~~~~~aa~~g~~~a~--lg~~-y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~-~---d~~~A~~~~~~   86 (138)
T 1klx_A           14 AIQYYVKACELNEMFGC--LSLV-SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK-K---DLRKAAQYYSK   86 (138)
T ss_dssp             HHHHHHHHHHTTCTTHH--HHHH-TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC-C---CHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHhhh--HHHH-HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC-c---cHHHHHHHHHH
Confidence            45788999999999999  6743 3444566779999999999999999999999998 44433 2   46778888876


Q ss_pred             Hhh
Q 038912          145 VYR  147 (199)
Q Consensus       145 l~~  147 (199)
                      .-+
T Consensus        87 Aa~   89 (138)
T 1klx_A           87 ACG   89 (138)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            643

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=96.73  E-value=0.0012  Score=58.02  Aligned_cols=48  Identities=21%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             ccCCCCChHHHHHHHHHhccCCHHHHH-HHHHhcHhHHHhhcchhHhhhccc
Q 038912            5 RSIFSLPDELLSEILARVGACSLDDLL-NAGLSCKLFNEITFDKYVLRQASI   55 (199)
Q Consensus         5 ~~~~~LpdDLlv~I~~kVA~~s~~DL~-~~~~tcKrf~~l~~~~~Vl~~asl   55 (199)
                      ..++.||+|||.+|+.++   ++.||. .+.++||++++++.++.+.++.-.
T Consensus        49 ~~~~~LP~ell~~Il~~L---p~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~   97 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAEL---PATELVQACRLVCLRWKELVDGAPLWLLKCQ   97 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTS---CHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcC---CHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence            468899999999999999   678998 999999999999999998876543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.51  E-value=0.00095  Score=59.15  Aligned_cols=53  Identities=25%  Similarity=0.332  Sum_probs=48.3

Q ss_pred             ccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccccCC
Q 038912            5 RSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPA   60 (199)
Q Consensus         5 ~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~l~~   60 (199)
                      .+|+.||+|++..|++-+   ++.||..+-++||+.+.+++|+...|+.-...+..
T Consensus         3 ~~l~~LP~ei~l~IlsfL---~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~   55 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFL---SPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPS   55 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTS---CHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGG
T ss_pred             chhHhCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCC
Confidence            468899999999999998   89999999999999999999999999988876653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.39  E-value=0.0069  Score=53.84  Aligned_cols=56  Identities=21%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             hHHHHHHHhcCCccchHHHHHHHH--hccCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038912           67 YSFLEKCRDSGNPEALYKQGVVEF--FSYSNLEAGVAYLDIATKSGHLGASYILGVIFL  123 (199)
Q Consensus        67 ~~FlkrC~~aGNpeA~Y~~Gm~~~--f~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~  123 (199)
                      ..++++.. .|||+|+|..|...+  ...++.+.++.++.+|+..|+..|.|.+|.+..
T Consensus       237 ~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          237 QALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34455545 566666666665533  445555556666666665556666666665555

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.13  E-value=0.016  Score=51.03  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=47.9

Q ss_pred             CcchHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~  139 (199)
                      +.+..++++.++.||++|.|..|...+..   .++.+.++..+.+|+..|+..|.|.+|.+.. +.|.. .   ..++++
T Consensus        60 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~-~---~~~~A~  135 (490)
T 2xm6_A           60 TQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK-V---DKAESV  135 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-C---CHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC-C---CHHHHH
Confidence            34456667777777777777777554442   5566777777777777777777777777666 33222 1   234555


Q ss_pred             HHHHHH
Q 038912          140 QHLDKV  145 (199)
Q Consensus       140 ~~~~~l  145 (199)
                      ++|.+.
T Consensus       136 ~~~~~a  141 (490)
T 2xm6_A          136 KWFRLA  141 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.09  E-value=0.011  Score=52.41  Aligned_cols=55  Identities=18%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             HHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038912           68 SFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL  123 (199)
Q Consensus        68 ~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~  123 (199)
                      .++++.+ .||++|+|..|......   .++.+.++.++.+|+..|+..|.|.+|.+..
T Consensus       308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS  365 (452)
T ss_dssp             HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            3444444 55555555555332221   2244555666666665566666666665555

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.89  E-value=0.0071  Score=52.06  Aligned_cols=53  Identities=28%  Similarity=0.439  Sum_probs=46.7

Q ss_pred             CccccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccc
Q 038912            2 FRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK   57 (199)
Q Consensus         2 ~~~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~   57 (199)
                      ++..+|+.||+|++.+|++.+   ++.||..+.++||+++.++.++.+.++.-...
T Consensus        14 ~~~d~~~~lp~e~~~~i~~~l---~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~   66 (445)
T 2ovr_B           14 FQRDFISLLPKELALYVLSFL---EPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (445)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTS---CHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             ccCChhHHCCHHHHHHHHHhC---CHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence            456789999999999999988   69999999999999999999998888765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.74  E-value=0.0039  Score=53.60  Aligned_cols=51  Identities=22%  Similarity=0.294  Sum_probs=45.4

Q ss_pred             CccccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcc-hhHhhhccc
Q 038912            2 FRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFD-KYVLRQASI   55 (199)
Q Consensus         2 ~~~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~-~~Vl~~asl   55 (199)
                      ++..+|..||+|++.+|++.+   ++.||..+.++||+++.++.+ +.+.+++.+
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l---~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~   61 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYL---QFEDIINSLGVSQNWNKIIRKSTSLWKKLLI   61 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTS---CHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccCChHHCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            567788999999999999998   889999999999999999998 888776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.73  E-value=0.04  Score=43.95  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=27.8

Q ss_pred             hHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038912           67 YSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL  123 (199)
Q Consensus        67 ~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~  123 (199)
                      ..++++.++.|++++.|..|...+..   .++.+.++.++.+|+..++..|.+.+|.+..
T Consensus        62 ~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~  121 (273)
T 1ouv_A           62 ASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH  121 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            34445555555555555555443221   3444555555555555555555555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.65  E-value=0.042  Score=43.82  Aligned_cols=79  Identities=16%  Similarity=0.274  Sum_probs=62.5

Q ss_pred             CcchHHHHHHHhcCCccchHHHHHHHHh---ccCChHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCRDSGNPEALYKQGVVEFF---SYSNLEAGVAYLDIATKSGHLGASYILGVIFLC-KDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f---~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~c-~G~~~~d~~~~~~g~  139 (199)
                      +.+..++++.++.|+++|.|..|...+.   ..++.+.++.++.+|+..++..|.|.+|.+..- .|..    ...++++
T Consensus        23 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~----~~~~~A~   98 (273)
T 1ouv_A           23 TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVS----QNTNKAL   98 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC----CCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcc----cCHHHHH
Confidence            4556788899999999999999976554   177889999999999999999999999999985 2211    1346777


Q ss_pred             HHHHHHh
Q 038912          140 QHLDKVY  146 (199)
Q Consensus       140 ~~~~~l~  146 (199)
                      +++.+..
T Consensus        99 ~~~~~a~  105 (273)
T 1ouv_A           99 QYYSKAC  105 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=95.57  E-value=0.046  Score=48.07  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=62.3

Q ss_pred             chHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHHH
Q 038912           66 NYSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQH  141 (199)
Q Consensus        66 ~~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~~  141 (199)
                      ....+++..+.||++|.|..|...+..   .++.+.++.++.+|+..|++.|.|.+|.+.. +.|.. .   ..++++++
T Consensus        26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~-~---~~~~A~~~  101 (490)
T 2xm6_A           26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVP-Q---DYAQAVIW  101 (490)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-C---CHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC-C---CHHHHHHH
Confidence            357788889999999999999875542   6788999999999999999999999999998 44433 2   35777777


Q ss_pred             HHHHh
Q 038912          142 LDKVY  146 (199)
Q Consensus       142 ~~~l~  146 (199)
                      +.+..
T Consensus       102 ~~~a~  106 (490)
T 2xm6_A          102 YKKAA  106 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=95.48  E-value=0.0063  Score=50.84  Aligned_cols=51  Identities=29%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             cccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccc
Q 038912            4 TRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK   57 (199)
Q Consensus         4 ~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~   57 (199)
                      ...++.||||++.+|+..+   +..|+..+.++||++++++.++..++.+.+..
T Consensus         6 ~~~~~~LP~eil~~If~~L---~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~   56 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCL---CLPELLKVSGVCKRWYRLASDESLWQTLDLTG   56 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTS---CHHHHHHTTSSCHHHHHHHTCSTTSSEEECTT
T ss_pred             cCChhhCCHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCchhheeecccc
Confidence            4678999999999999988   66799999999999999999888777666543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.17  E-value=0.006  Score=52.59  Aligned_cols=54  Identities=24%  Similarity=0.355  Sum_probs=45.8

Q ss_pred             CCccccCCCCChH----HHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccc
Q 038912            1 MFRTRSIFSLPDE----LLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEK   57 (199)
Q Consensus         1 ~~~~~~~~~LpdD----Llv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~   57 (199)
                      +++..+|..||+|    ++..|++.+   .+.||..+.++||+++.++.++.+.+++-...
T Consensus         5 ~~~~d~~~~lp~e~~~~~~~~i~~~l---~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A            5 MLQRDFITALPARGLDHIAENILSYL---DAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             CSCCCHHHHTGGGTCHHHHHHHHTTC---CHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hhhcChHHHCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            4577888999999    777777776   68999999999999999999999888775444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.75  E-value=0.24  Score=35.05  Aligned_cols=65  Identities=8%  Similarity=-0.008  Sum_probs=56.4

Q ss_pred             cCCccchHHHHHHHHhccCC--hHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912           76 SGNPEALYKQGVVEFFSYSN--LEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR  147 (199)
Q Consensus        76 aGNpeA~Y~~Gm~~~f~~~~--~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~  147 (199)
                      -.||++.+..|...||..+.  .+.+..+|++|-  ++.+..|.+.+|.+.+-.|..       +++++++.++..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y-------~~Ai~~w~~~l~   71 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF-------QEAIDTWVLLLD   71 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Confidence            46899999999999997775  589999999964  557899999999999999975       899999998875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=90.85  E-value=1.5  Score=33.13  Aligned_cols=92  Identities=11%  Similarity=0.035  Sum_probs=66.3

Q ss_pred             CCcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912           63 WHKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIAT--KSGHLGASYILGVIFLCKDDEDDDNESNQKG  138 (199)
Q Consensus        63 w~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA--~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g  138 (199)
                      ++.+...+++.++  -.|+++.+..|.. ++..++.+.++..+.+|.  .+.+..|.|-+|.+++-.|..       +++
T Consensus        52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~-~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~-------~eA  123 (151)
T 3gyz_A           52 IEEAEVFFRFLCIYDFYNVDYIMGLAAI-YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP-------LKA  123 (151)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH-------HHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-------HHH
Confidence            3455566666554  5788999999965 456778899999999975  457899999999999999965       888


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHH
Q 038912          139 MQHLDKVYRAKRLSQCRNKLQSIT  162 (199)
Q Consensus       139 ~~~~~~l~~~r~~~~~r~~ik~~~  162 (199)
                      ++.|.+...-.--...+++++..+
T Consensus       124 ~~~~~~al~l~~~~~~~~~A~~ll  147 (151)
T 3gyz_A          124 KECFELVIQHSNDEKLKIKAQSYL  147 (151)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHH
Confidence            888888775321122445554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=90.82  E-value=0.14  Score=45.74  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=29.0

Q ss_pred             cccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHh
Q 038912            4 TRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEI   43 (199)
Q Consensus         4 ~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l   43 (199)
                      .+.++.||||++.+|++.+  .+..|+..+.++||+++++
T Consensus         3 ~d~~~~LPdevL~~If~~L--~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFI--QLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTC--CCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhc--CCchhHHHHHHHHHHHHHh
Confidence            3578999999999999999  3479999999999999988

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=90.14  E-value=2.9  Score=28.36  Aligned_cols=65  Identities=15%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912           75 DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR  147 (199)
Q Consensus        75 ~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~  147 (199)
                      +-.|+++.|..|.. ++..++.+.++..+.+|..  +.+..|.+.+|.++.-.|..       +++++.+.+...
T Consensus         3 ~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~   69 (100)
T 3ma5_A            3 DPEDPFTRYALAQE-HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT-------DDAIDTYAQGIE   69 (100)
T ss_dssp             --CCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Confidence            35788999999975 5678888999999999865  45789999999999999865       777777776653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=89.94  E-value=2.1  Score=29.57  Aligned_cols=90  Identities=16%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             CcchHHHHHHHhcC-----CccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHH
Q 038912           64 HKNYSFLEKCRDSG-----NPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQ  136 (199)
Q Consensus        64 ~~~~~FlkrC~~aG-----NpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~  136 (199)
                      +.+..++++.++.+     ++.+.+..|.. ++..++.+.++..+.+|..  +.+..+.+.+|++++-.|..       +
T Consensus         7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~   78 (117)
T 3k9i_A            7 AQAVPYYEKAIASGLQGKDLAECYLGLGST-FRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-------E   78 (117)
T ss_dssp             CCCHHHHHHHHSSCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------H
T ss_pred             HHHHHHHHHHHHcCCCCccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH-------H
Confidence            45567788877764     45778888865 5577888999999999864  46899999999999999965       7


Q ss_pred             HHHHHHHHHhhhh----hHHHHHHHHHHH
Q 038912          137 KGMQHLDKVYRAK----RLSQCRNKLQSI  161 (199)
Q Consensus       137 ~g~~~~~~l~~~r----~~~~~r~~ik~~  161 (199)
                      +++++|.+.....    .+..+.+-+..+
T Consensus        79 ~A~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           79 QGVELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            8888888776421    444444444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=89.67  E-value=3  Score=30.66  Aligned_cols=76  Identities=5%  Similarity=-0.013  Sum_probs=58.7

Q ss_pred             CcchHHHHHHH--hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCR--DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~--~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~  139 (199)
                      +.+...+++.+  +-.|+++.+..|... +..++.+.++..+.+|..  +.+..+.|.+|.+++..|..       ++++
T Consensus        38 ~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-------~~A~  109 (148)
T 2vgx_A           38 EDAHXVFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL-------AEAE  109 (148)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-------HHHH
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH-------HHHH
Confidence            44455666654  456888999888754 577788999999999764  56899999999999999965       7788


Q ss_pred             HHHHHHhh
Q 038912          140 QHLDKVYR  147 (199)
Q Consensus       140 ~~~~~l~~  147 (199)
                      ++|.+...
T Consensus       110 ~~~~~al~  117 (148)
T 2vgx_A          110 SGLFLAQE  117 (148)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=89.33  E-value=4.1  Score=29.11  Aligned_cols=76  Identities=7%  Similarity=-0.068  Sum_probs=58.3

Q ss_pred             CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~  139 (199)
                      +.+..++++.++  -.|+++.+..|.. ++..++.+.++..+.+|..  +.+..+.|.+|.+++..|..       ++++
T Consensus        35 ~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~  106 (142)
T 2xcb_A           35 DDAQKIFQALCMLDHYDARYFLGLGAC-RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL-------DGAE  106 (142)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-------HHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-------HHHH
Confidence            444556666543  4688888888876 4577888999999999764  56889999999999999965       7788


Q ss_pred             HHHHHHhh
Q 038912          140 QHLDKVYR  147 (199)
Q Consensus       140 ~~~~~l~~  147 (199)
                      ++|.+...
T Consensus       107 ~~~~~al~  114 (142)
T 2xcb_A          107 SGFYSARA  114 (142)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=88.89  E-value=3.9  Score=28.13  Aligned_cols=76  Identities=12%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~  139 (199)
                      +.+..++.++++  ..|+++.+..|.. ++..++.+.++..+.+|..  +.+..+.|.+|.+++..|..       ++++
T Consensus        26 ~~A~~~~~~al~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-------~~A~   97 (137)
T 3q49_B           26 PEAAACYGRAITRNPLVAVYYTNRALC-YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY-------DEAI   97 (137)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred             HHHHHHHHHHHhhCcCcHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH-------HHHH
Confidence            344455555544  4567888888876 4567788999999988764  45789999999999998865       7778


Q ss_pred             HHHHHHhh
Q 038912          140 QHLDKVYR  147 (199)
Q Consensus       140 ~~~~~l~~  147 (199)
                      ++|.+...
T Consensus        98 ~~~~~a~~  105 (137)
T 3q49_B           98 ANLQRAYS  105 (137)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=87.48  E-value=2.9  Score=27.18  Aligned_cols=74  Identities=8%  Similarity=0.067  Sum_probs=46.0

Q ss_pred             cchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHhc--C--ChhHHHHHHHHHHhc-CCCCCChhhHHH
Q 038912           65 KNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKS--G--HLGASYILGVIFLCK-DDEDDDNESNQK  137 (199)
Q Consensus        65 ~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~--g--h~~A~Y~~~ml~~c~-G~~~~d~~~~~~  137 (199)
                      .+...+++.++  ..++++.+..|.. ++..++.+.++..+.+|...  .  +..+.+.+|.+++-. |..       ++
T Consensus        24 ~A~~~~~~a~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~   95 (112)
T 2kck_A           24 ESIDLFEKAIQLDPEESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKE-------VE   95 (112)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS-------HH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH-------HH
Confidence            33445555443  3456666666654 44556677777777776643  3  567777777777777 755       66


Q ss_pred             HHHHHHHHh
Q 038912          138 GMQHLDKVY  146 (199)
Q Consensus       138 g~~~~~~l~  146 (199)
                      ++++|.++.
T Consensus        96 A~~~~~~~~  104 (112)
T 2kck_A           96 AEIAEARAK  104 (112)
T ss_dssp             HHHHHHHHG
T ss_pred             HHHHHHHHh
Confidence            666666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=87.43  E-value=5.1  Score=27.19  Aligned_cols=75  Identities=17%  Similarity=0.226  Sum_probs=56.1

Q ss_pred             cchHHHHHHHh--cCCc---cchHHHHHHHHhccCChHHHHHHHHHHHh--cCC---hhHHHHHHHHHHhcCCCCCChhh
Q 038912           65 KNYSFLEKCRD--SGNP---EALYKQGVVEFFSYSNLEAGVAYLDIATK--SGH---LGASYILGVIFLCKDDEDDDNES  134 (199)
Q Consensus        65 ~~~~FlkrC~~--aGNp---eA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh---~~A~Y~~~ml~~c~G~~~~d~~~  134 (199)
                      .+...+++.++  .+++   ++.|..|.. ++..++.+.++..+.++..  +.+   ..|.|.+|.+++-.|..      
T Consensus        20 ~A~~~~~~~~~~~p~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~------   92 (129)
T 2xev_A           20 DASQLFLSFLELYPNGVYTPNALYWLGES-YYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN------   92 (129)
T ss_dssp             HHHHHHHHHHHHCSSSTTHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH------
T ss_pred             HHHHHHHHHHHHCCCCcccHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH------
Confidence            34456666554  3556   688888865 5677888999999999765  356   78899999999988864      


Q ss_pred             HHHHHHHHHHHhh
Q 038912          135 NQKGMQHLDKVYR  147 (199)
Q Consensus       135 ~~~g~~~~~~l~~  147 (199)
                       ++++++|.++..
T Consensus        93 -~~A~~~~~~~~~  104 (129)
T 2xev_A           93 -TEAQQTLQQVAT  104 (129)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH
Confidence             778888877764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=86.14  E-value=3  Score=30.53  Aligned_cols=77  Identities=16%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             CcchHHHHHHHh--cCCccchHHHHHHHHhccCCh--HHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHH
Q 038912           64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNL--EAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQK  137 (199)
Q Consensus        64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~--~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~  137 (199)
                      +.+..++++.++  ..|+++.+..|...++..++.  +.++..+.+|..  +.+..+.+.+|.+++-.|..       ++
T Consensus        61 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~  133 (177)
T 2e2e_A           61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY-------AQ  133 (177)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH-------HH
Confidence            444555665443  468889999998878888887  999999988764  45788999999999988864       77


Q ss_pred             HHHHHHHHhh
Q 038912          138 GMQHLDKVYR  147 (199)
Q Consensus       138 g~~~~~~l~~  147 (199)
                      +++++.+...
T Consensus       134 A~~~~~~al~  143 (177)
T 2e2e_A          134 AIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888887764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=86.01  E-value=1.4  Score=31.37  Aligned_cols=49  Identities=14%  Similarity=0.087  Sum_probs=24.7

Q ss_pred             CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcC
Q 038912           77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKD  126 (199)
Q Consensus        77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G  126 (199)
                      .|+++.|..|... +..++.+.++..+.+|..  +.+..|.+.+|+++.-.|
T Consensus        49 ~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           49 EREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             TCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            4555555555543 234444555555555432  234555555555555444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=85.84  E-value=3.4  Score=26.81  Aligned_cols=65  Identities=15%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912           75 DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR  147 (199)
Q Consensus        75 ~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~  147 (199)
                      +.+|+++.+..|.. ++..++.+.++.++.+|..  +.+..+.+.+|.+++..|..       +++++++.+...
T Consensus         2 ~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~a~~   68 (112)
T 2kck_A            2 VDQNPEEYYLEGVL-QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-------EEAVDCYNYVIN   68 (112)
T ss_dssp             CCSSTTGGGGHHHH-HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-------HHHHHHHHHHHH
Confidence            34678888888876 4567788999999999865  34678899999999988864       777777777653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=85.74  E-value=4.9  Score=26.98  Aligned_cols=76  Identities=5%  Similarity=0.044  Sum_probs=55.4

Q ss_pred             CcchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~  139 (199)
                      +.+..++++.++.  .|+++.+..|.. ++..++.+.++..+.+|..  +.+..+.+.+|.+++-.|..       ++++
T Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-------~~A~  104 (133)
T 2lni_A           33 PQAMKHYTEAIKRNPKDAKLYSNRAAC-YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY-------TKAM  104 (133)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHH-HTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH-------HHHH
Confidence            3445566665544  467778887765 4667788999999998765  35688999999999888854       7777


Q ss_pred             HHHHHHhh
Q 038912          140 QHLDKVYR  147 (199)
Q Consensus       140 ~~~~~l~~  147 (199)
                      ++|.+...
T Consensus       105 ~~~~~~~~  112 (133)
T 2lni_A          105 DVYQKALD  112 (133)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=84.19  E-value=5.4  Score=31.37  Aligned_cols=81  Identities=10%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             cCCccchHHHHHHHHhccC--ChHHHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhh
Q 038912           76 SGNPEALYKQGVVEFFSYS--NLEAGVAYLDIATKSG----HLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYRAK  149 (199)
Q Consensus        76 aGNpeA~Y~~Gm~~~f~~~--~~~~Gl~lL~~AA~~g----h~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~~r  149 (199)
                      ..++++.|.-|+-++=...  +...|+.+|.......    +.+++|-+|+-.+-.|..       .++.+++..+.+..
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y-------~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-------EKALKYVRGLLQTE  101 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH-------HHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH-------HHHHHHHHHHHhcC
Confidence            4567888888877766443  3479999999877665    689999999999999865       88999999998632


Q ss_pred             ----hHHHHHHHHHHHHH
Q 038912          150 ----RLSQCRNKLQSITQ  163 (199)
Q Consensus       150 ----~~~~~r~~ik~~~~  163 (199)
                          ......+.|++.+.
T Consensus       102 P~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A          102 PQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence                55556666665553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=83.91  E-value=7.3  Score=27.70  Aligned_cols=77  Identities=6%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             CCcchHHHHHHH--hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHH
Q 038912           63 WHKNYSFLEKCR--DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKG  138 (199)
Q Consensus        63 w~~~~~FlkrC~--~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g  138 (199)
                      ++.+...+.+.+  +-.|+++.+..|.. ++..++.+.++..+.+|..  +.+..|.|.+|.+++..|..       +++
T Consensus        29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-------~~A  100 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPENAILYSNRAAC-LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREW-------SKA  100 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhhH-HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH-------HHH
Confidence            344555666654  35688888888876 4567788999999998764  56889999999999998865       788


Q ss_pred             HHHHHHHhh
Q 038912          139 MQHLDKVYR  147 (199)
Q Consensus       139 ~~~~~~l~~  147 (199)
                      ++.|.+...
T Consensus       101 ~~~~~~al~  109 (126)
T 4gco_A          101 QRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=83.24  E-value=4  Score=27.76  Aligned_cols=72  Identities=17%  Similarity=0.084  Sum_probs=54.5

Q ss_pred             HHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 038912           68 SFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLD  143 (199)
Q Consensus        68 ~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~  143 (199)
                      ..+++.++  -.|+.+.|..|.. ++..++.+.++..+.+|..  +.+..+.|.+|.++...|..       +++++++.
T Consensus         6 ~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~~~~~   77 (115)
T 2kat_A            6 ERLEAMLAQGTDNMLLRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-------AGARQAWE   77 (115)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------HHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHH-HHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHH
Confidence            44555443  4678888888865 4667888999999999764  45788999999999998865       67777777


Q ss_pred             HHhh
Q 038912          144 KVYR  147 (199)
Q Consensus       144 ~l~~  147 (199)
                      +...
T Consensus        78 ~al~   81 (115)
T 2kat_A           78 SGLA   81 (115)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=82.57  E-value=3.5  Score=30.15  Aligned_cols=64  Identities=9%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCC
Q 038912           64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDE  128 (199)
Q Consensus        64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~  128 (199)
                      +.+..+++++++  -.|+++.+..|.. ++..++.+.++..+.+|..  +.+..|.+.+|.+++-.|..
T Consensus        48 ~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           48 DLAKKYICTYINVQERDPKAHRFLGLL-YELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence            445566666544  3577777777765 3455666777777777653  45677777777777766643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=82.34  E-value=11  Score=27.10  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=58.2

Q ss_pred             CcchHHHHHHHh--cCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCRD--SGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~~--aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~  139 (199)
                      +.+..++.+.++  -.|+++.+..|.. ++..++.+.++..+.+|..  +.+..+.|.+|.+++..|..       ++++
T Consensus        28 ~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~   99 (164)
T 3sz7_A           28 SKAIDLYTQALSIAPANPIYLSNRAAA-YSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY-------KGAK   99 (164)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred             HHHHHHHHHHHHhCCcCHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-------HHHH
Confidence            444556666554  4588888888876 5567888999999999764  46789999999999999865       7788


Q ss_pred             HHHHHHhh
Q 038912          140 QHLDKVYR  147 (199)
Q Consensus       140 ~~~~~l~~  147 (199)
                      ++|.+...
T Consensus       100 ~~~~~al~  107 (164)
T 3sz7_A          100 EAYEKGIE  107 (164)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=81.94  E-value=6.8  Score=26.54  Aligned_cols=60  Identities=10%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCCh---hHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHh
Q 038912           79 PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHL---GASYILGVIFLCKDDEDDDNESNQKGMQHLDKVY  146 (199)
Q Consensus        79 peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~---~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~  146 (199)
                      +++.|..|.. ++..++.+.++.++.++..  +.+.   .+.|.+|.+.+-.|..       +++++++.++.
T Consensus         2 ~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~~~   66 (129)
T 2xev_A            2 ARTAYNVAFD-ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF-------QLAEAQFRDLV   66 (129)
T ss_dssp             -CCHHHHHHH-HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred             cHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-------HHHHHHHHHHH
Confidence            5677888865 5567888999999999775  3455   6999999999988865       77777777665

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.69  E-value=11  Score=25.81  Aligned_cols=76  Identities=7%  Similarity=0.020  Sum_probs=52.5

Q ss_pred             CcchHHHHHHHhcCC-----ccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHH
Q 038912           64 HKNYSFLEKCRDSGN-----PEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQ  136 (199)
Q Consensus        64 ~~~~~FlkrC~~aGN-----peA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~  136 (199)
                      +.+...+++.++...     +.+.+..|.. ++..++.+.++..+.++..  +.+..+.|.+|.+++-.|..       +
T Consensus        45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~  116 (148)
T 2dba_A           45 GGALAAYTQALGLDATPQDQAVLHRNRAAC-HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL-------D  116 (148)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH-------H
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHH-HHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH-------H
Confidence            344456666555432     5566666654 5667788888888888764  34678888999998888854       7


Q ss_pred             HHHHHHHHHhh
Q 038912          137 KGMQHLDKVYR  147 (199)
Q Consensus       137 ~g~~~~~~l~~  147 (199)
                      ++++++.+...
T Consensus       117 ~A~~~~~~al~  127 (148)
T 2dba_A          117 QAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=80.41  E-value=3.9  Score=30.80  Aligned_cols=63  Identities=11%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912           77 GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR  147 (199)
Q Consensus        77 GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~  147 (199)
                      .|+++.|..|+. ++..++.+.++..+.+|..  +.+..+.+.+|.++.-.|..       +++++.|.+...
T Consensus        34 ~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-------~~Ai~~~~~al~   98 (151)
T 3gyz_A           34 DMMDDIYSYAYD-FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-------QQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-------HHHHHHHHHHHh
Confidence            577899999975 5788899999999999764  56899999999999999965       888888887763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 8e-05
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 9  SLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYV 49
          SLPDELL  I + +    L +LL     CK +  +  D+ +
Sbjct: 3  SLPDELLLGIFSCL---CLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 1  MFRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIPA 60
           F+   I  LP EL   +L+ +      DLL A  +C+ +  +  D  + R+   E+   
Sbjct: 13 QFQRDFISLLPKELALYVLSFL---EPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGID 69

Query: 61 MPWH-KNYSFLEKCRDSGNPEALYKQ 85
           P H K    ++        ++ Y +
Sbjct: 70 EPLHIKRRKVIKPGFIHSPWKSAYIR 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.95
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.8
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.47
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.12
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.94
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	90.06
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	89.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	81.48

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.9e-07  Score=56.10  Aligned_cols=40  Identities=35%  Similarity=0.493  Sum_probs=37.1

Q ss_pred             CCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhH
Q 038912            7 IFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYV   49 (199)
Q Consensus         7 ~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~V   49 (199)
                      |+.||+|++++|++.+   ++.||.++.++||++++++.++.+
T Consensus         1 f~~LP~eil~~If~~L---~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL---CLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTS---CGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCccc
Confidence            6889999999999998   788999999999999999999864

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.6e-06  Score=59.53  Aligned_cols=56  Identities=27%  Similarity=0.368  Sum_probs=50.0

Q ss_pred             CCccccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhccccccC
Q 038912            1 MFRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIEKIP   59 (199)
Q Consensus         1 ~~~~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~~l~   59 (199)
                      +++.++|..||+|++..|++.+   ++.||..+.++||+++.++.++.+.+.+-.....
T Consensus        13 ~~~~D~i~~LP~Eil~~Ils~L---d~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~   68 (102)
T d2ovrb1          13 QFQRDFISLLPKELALYVLSFL---EPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGI   68 (102)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTS---CHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTC
T ss_pred             hhccCChhhCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCC
Confidence            4678899999999999999998   9999999999999999999999999877655443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.80  E-value=6.8e-05  Score=54.57  Aligned_cols=78  Identities=15%  Similarity=0.159  Sum_probs=61.2

Q ss_pred             CcchHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~  139 (199)
                      ++...++++..+.|||+|+|..|...+..   .++.+.++.++.+|+..|++.|.|.+|++.. +.|.. .   ..++++
T Consensus        40 ~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~-~---d~~~A~  115 (133)
T d1klxa_          40 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVV-K---NEKQAV  115 (133)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-C---CHHHHH
T ss_pred             HHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccC-C---CHHHHH
Confidence            34467889999999999999999876543   4566899999999999999999999999888 56554 3   245667


Q ss_pred             HHHHHH
Q 038912          140 QHLDKV  145 (199)
Q Consensus       140 ~~~~~l  145 (199)
                      +++.+-
T Consensus       116 ~~~~~A  121 (133)
T d1klxa_         116 KTFEKA  121 (133)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.47  E-value=0.00016  Score=52.49  Aligned_cols=75  Identities=16%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             chHHHHHHHhcCCccchHHHHHHHHhccCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHHHHHH
Q 038912           66 NYSFLEKCRDSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQHLDK  144 (199)
Q Consensus        66 ~~~FlkrC~~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~~~~~  144 (199)
                      +..++++-.+.|++.|+|..|-   ....+.+.++.++.+|+..|++.|.|.+|.+.+ +.+.. .   ..++++++|.+
T Consensus        12 A~~~~~kaa~~g~~~a~~~l~~---~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~-~---d~~~A~~~~~~   84 (133)
T d1klxa_          12 AIQYYVKACELNEMFGCLSLVS---NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK-K---DLRKAAQYYSK   84 (133)
T ss_dssp             HHHHHHHHHHTTCTTHHHHHHT---CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC-C---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChhhhhhhcc---ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccc-h---hhHHHHHHHhh
Confidence            3468888889999999999873   456678999999999999999999999999988 55543 3   35678888877


Q ss_pred             Hhh
Q 038912          145 VYR  147 (199)
Q Consensus       145 l~~  147 (199)
                      .-.
T Consensus        85 aa~   87 (133)
T d1klxa_          85 ACG   87 (133)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            653

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=4e-05  Score=54.27  Aligned_cols=50  Identities=20%  Similarity=0.272  Sum_probs=43.2

Q ss_pred             CccccCCCCChHHHHHHHHHhccCCHHHHHHHHHhcHhHHHhh-cchhHhhhcc
Q 038912            2 FRTRSIFSLPDELLSEILARVGACSLDDLLNAGLSCKLFNEIT-FDKYVLRQAS   54 (199)
Q Consensus         2 ~~~~~~~~LpdDLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~-~~~~Vl~~as   54 (199)
                      |+-++|..||+||+.+|++.+   ++.||..+.++||+++.++ .|+.+.+++-
T Consensus         1 lk~D~~~~LP~Ell~~I~s~L---d~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~   51 (100)
T d1nexb1           1 LKRDLITSLPFEISLKIFNYL---QFEDIINSLGVSQNWNKIIRKSTSLWKKLL   51 (100)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTS---CHHHHHHHTTTCHHHHHHHHTCSHHHHHHH
T ss_pred             CCCCchhhCCHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            456788999999999999988   8899999999999999976 5678777653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.12  E-value=0.00069  Score=52.77  Aligned_cols=76  Identities=13%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             hHHHHHHHhcCCccchHHHHHHHHhc---cCChHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCChhhHHHHHHHH
Q 038912           67 YSFLEKCRDSGNPEALYKQGVVEFFS---YSNLEAGVAYLDIATKSGHLGASYILGVIFL-CKDDEDDDNESNQKGMQHL  142 (199)
Q Consensus        67 ~~FlkrC~~aGNpeA~Y~~Gm~~~f~---~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~-c~G~~~~d~~~~~~g~~~~  142 (199)
                      ..++++..+.||++|+|..|...+..   .++.+.++.++.+|+..|++.|.|-+|++.. +.|..+    ..++++++|
T Consensus       166 ~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~----n~~~A~~~~  241 (265)
T d1ouva_         166 LASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTR----NEKQAIENF  241 (265)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSC----CSTTHHHHH
T ss_pred             hhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCcc----CHHHHHHHH
Confidence            46888899999999999999886663   4577999999999999999999999999998 455442    234677887


Q ss_pred             HHHh
Q 038912          143 DKVY  146 (199)
Q Consensus       143 ~~l~  146 (199)
                      .+--
T Consensus       242 ~kAa  245 (265)
T d1ouva_         242 KKGC  245 (265)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7553

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00012  Score=53.02  Aligned_cols=53  Identities=25%  Similarity=0.370  Sum_probs=45.0

Q ss_pred             CCccccCCCCCh----HHHHHHHHHhccCCHHHHHHHHHhcHhHHHhhcchhHhhhcccc
Q 038912            1 MFRTRSIFSLPD----ELLSEILARVGACSLDDLLNAGLSCKLFNEITFDKYVLRQASIE   56 (199)
Q Consensus         1 ~~~~~~~~~Lpd----DLlv~I~~kVA~~s~~DL~~~~~tcKrf~~l~~~~~Vl~~asl~   56 (199)
                      |++.++|..||.    +|+..|++-+   .+.||..+.++||++++++.|+.+.+.+-..
T Consensus         5 ~l~~D~i~~LP~~l~~EI~~~Ils~L---d~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1           5 MLQRDFITALPARGLDHIAENILSYL---DAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             CSCCCHHHHTGGGTCHHHHHHHHTTC---CHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHcccHHHHCCCCChHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            678889999995    6777777766   8999999999999999999999998876543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.68  E-value=0.002  Score=49.97  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=60.1

Q ss_pred             cchHHHHHHHhcCCccchHHHHHHHHh---ccCChHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 038912           65 KNYSFLEKCRDSGNPEALYKQGVVEFF---SYSNLEAGVAYLDIATKSGHLGASYILGVIFLCKDDEDDDNESNQKGMQH  141 (199)
Q Consensus        65 ~~~~FlkrC~~aGNpeA~Y~~Gm~~~f---~~~~~~~Gl~lL~~AA~~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~  141 (199)
                      .+..|+++..+.||++|+|..|+.-+.   ..++...+..++..++..+|+.|.+.+|.+........   ...++++..
T Consensus        20 ~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~---~~~~~a~~~   96 (265)
T d1ouva_          20 QAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVS---QNTNKALQY   96 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC---CCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccc---hhhHHHHHH
Confidence            345789999999999999999988555   25677899999999999999999999998877322221   244556666


Q ss_pred             HHHHh
Q 038912          142 LDKVY  146 (199)
Q Consensus       142 ~~~l~  146 (199)
                      +.+..
T Consensus        97 ~~~a~  101 (265)
T d1ouva_          97 YSKAC  101 (265)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            66553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.35  Score=34.00  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             cCCccchHHHHHHHHhccC--ChHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhh
Q 038912           76 SGNPEALYKQGVVEFFSYS--NLEAGVAYLDIATKS----GHLGASYILGVIFLCKDDEDDDNESNQKGMQHLDKVYR  147 (199)
Q Consensus        76 aGNpeA~Y~~Gm~~~f~~~--~~~~Gl~lL~~AA~~----gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~~~~~l~~  147 (199)
                      -.++++.|-.|...+-..+  +...|+.++.++...    .+.+|.|-+|+..+-.|..       +++++++.+...
T Consensus        30 p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~-------~~A~~~~~~aL~  100 (122)
T d1nzna_          30 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-------EKALKYVRGLLQ  100 (122)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHH
Confidence            5788999999988764332  346799999998753    3456899999999999965       889999998875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.66  E-value=0.52  Score=31.90  Aligned_cols=73  Identities=12%  Similarity=0.058  Sum_probs=52.2

Q ss_pred             cchHHHHHHHhc--CCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 038912           65 KNYSFLEKCRDS--GNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGMQ  140 (199)
Q Consensus        65 ~~~~FlkrC~~a--GNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~~  140 (199)
                      .+..+++++++-  .|+++.+..|.. ++..++.+.++..+.+|..  +.+.+|.+.+|+++.-.|.       -+++++
T Consensus        34 ~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~-------~~~A~~  105 (112)
T d1hxia_          34 EAALAFEAVCQKEPEREEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN-------ANAALA  105 (112)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHHHHhhhcccccccchhhhhhhhh-hhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC-------HHHHHH
Confidence            344556655443  478888888886 4777888888888888653  3578888888888887773       477777


Q ss_pred             HHHHH
Q 038912          141 HLDKV  145 (199)
Q Consensus       141 ~~~~l  145 (199)
                      .|.+.
T Consensus       106 ~l~~~  110 (112)
T d1hxia_         106 SLRAW  110 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.48  E-value=2.3  Score=29.87  Aligned_cols=75  Identities=12%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             CcchHHHHHHH--hcCCccchHHHHHHHHhccCChHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCChhhHHHHH
Q 038912           64 HKNYSFLEKCR--DSGNPEALYKQGVVEFFSYSNLEAGVAYLDIATK--SGHLGASYILGVIFLCKDDEDDDNESNQKGM  139 (199)
Q Consensus        64 ~~~~~FlkrC~--~aGNpeA~Y~~Gm~~~f~~~~~~~Gl~lL~~AA~--~gh~~A~Y~~~ml~~c~G~~~~d~~~~~~g~  139 (199)
                      +.+..++.+.+  +-.|+.+.+..|.. |+..++.+.++..+.+|-.  +.+..|.|-+|.+++..|..       ++++
T Consensus        21 ~~Ai~~~~kal~~~p~~~~~~~~lg~~-y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~-------~~A~   92 (201)
T d2c2la1          21 PEAAACYGRAITRNPLVAVYYTNRALC-YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY-------DEAI   92 (201)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHhHHHH-HhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-------HHHH
Confidence            34445565544  44899999999987 7889999999999999965  56899999999999999865       7777


Q ss_pred             HHHHHHh
Q 038912          140 QHLDKVY  146 (199)
Q Consensus       140 ~~~~~l~  146 (199)
                      ++|.+..
T Consensus        93 ~~~~~al   99 (201)
T d2c2la1          93 ANLQRAY   99 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654