Citrus Sinensis ID: 038977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPLN
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccEEEEcccccEEEEcccccEEEEcccccccHHHHHHHHccccccEEEEEccccccccccEEEEEEccccccccHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHcccccEEccccEEEccccEEEEEcccccEEEEccccccHHHHHHHHHHcccHHEEEEEEccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
ylndpeataatidvegllhtgdigyvdhddeVFIVDRVKEIIKfkgfqvppaEIEALLlshpsiadatvvpqkdevagevPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKvhfvhaipkspsgkiLRKDLIAKLASSMPLN
Flexible Loop (DISEMBL)
YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFvhaipkspsgkilRKDLIAKlassmpln
Low Complexity Region (SEG)
YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPLN
Disordered region (IsUnstruct)
*********ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPK****KILR**L***********
Disordered Region (DISOPRED)
YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA******
Disordered Region (DISEMBL)
YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPLN
Disordered Region (DISPRO)
YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q42982	569	Probable 4-coumarate--CoA	yes	no	0.972	0.247	0.822	8e-64
Q9S777	561	4-coumarate--CoA ligase 3	yes	no	0.958	0.247	0.820	2e-62
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.986	0.261	0.720	1e-57
P31687	562	4-coumarate--CoA ligase 2	no	no	0.972	0.250	0.829	2e-57
Q67W82	559	Probable 4-coumarate--CoA	no	no	1.0	0.259	0.710	3e-56
Q6ETN3	554	Probable 4-coumarate--CoA	no	no	0.986	0.258	0.699	5e-56
P41636	537	4-coumarate--CoA ligase O	N/A	no	0.951	0.256	0.728	3e-55
Q9LU36	570	4-coumarate--CoA ligase 4	no	no	0.965	0.245	0.707	5e-52
O24146	542	4-coumarate--CoA ligase 2	N/A	no	0.986	0.263	0.741	3e-51
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.979	0.255	0.647	8e-51

>sp|Q42982|4CL2_ORYSJ Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2

 Score =  241 bits (616), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 132/141 (93%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATAATIDVEG LHTGDIGYVD DDEVFIVDRVKE+IKFKGFQVPPAE+E+LL++
Sbjct: 429 YLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELESLLIA 488

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKD+VAGEVPVAFVVR+   ++TEE+IKE+I+KQVVFYKRLHKVHF+HA
Sbjct: 489 HPSIADAAVVPQKDDVAGEVPVAFVVRAADSDITEESIKEFISKQVVFYKRLHKVHFIHA 548

Query: 121 IPKSPSGKILRKDLIAKLASS 141
           IPKS SGKILR++L AKLA+ 
Sbjct: 549 IPKSASGKILRRELRAKLAAC 569

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  237 bits (604), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 127/139 (91%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEAT+ATID EG LHTGDIGYVD DDE+FIVDR+KE+IKFKGFQVPPAE+E+LL++
Sbjct: 423 YLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPPAELESLLIN 482

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           H SIADA VVPQ DEVAGEVPVAFVVRSNG ++TEE +KEY+AKQVVFYKRLHKV FV +
Sbjct: 483 HHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVAS 542

Query: 121 IPKSPSGKILRKDLIAKLA 139
           IPKSPSGKILRKDL AKL 
Sbjct: 543 IPKSPSGKILRKDLKAKLC 561

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 125/143 (87%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEAT  TID EG LHTGDIG++D DDE+FIVDR+KE+IK+KGFQV PAEIEALLL+
Sbjct: 404 YLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLN 463

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP+I+DA VVP KDE AGEVPVAFVVRSNG  +TE+ +K++I+KQV+FYKR+ +V FV  
Sbjct: 464 HPNISDAAVVPMKDEQAGEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVET 523

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           +PKSPSGKILRKDL A+LA+ +P
Sbjct: 524 VPKSPSGKILRKDLRARLAAGVP 546

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/141 (82%), Positives = 130/141 (92%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLND  ATA+TID EG LHTGD+GYVD DDE+FIVDRVKE+IK+KGFQVPPAE+E LL+S
Sbjct: 417 YLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVS 476

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKD  AGEVPVAFVVRSNGF+LTEEA+KE+IAKQVVFYKRLHKV+FVHA
Sbjct: 477 HPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHA 536

Query: 121 IPKSPSGKILRKDLIAKLASS 141
           IPKSPSGKILRKDL AKL ++
Sbjct: 537 IPKSPSGKILRKDLRAKLETA 557

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q67W82|4CL4_ORYSJ Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 122/145 (84%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPE+T  TID  G LHTGDIGYVD DDE+FIVDR+KEIIK+KGFQVPPAE+EALL++
Sbjct: 408 YLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLIT 467

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I DA VVP  DE+AGEVPVAF+VR  G  ++E  IK+++AK+VVFYKRL+KV F  +
Sbjct: 468 HPDIKDAAVVPMIDEIAGEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADS 527

Query: 121 IPKSPSGKILRKDLIAKLASSMPLN 145
           IPKSPSGKILRKDL AKLA+ +P N
Sbjct: 528 IPKSPSGKILRKDLRAKLAAGIPTN 552

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6ETN3|4CL3_ORYSJ Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1

 Score =  216 bits (549), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 125/143 (87%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEAT  TID +G LHTGDIG+VD DDE+FIVDR+KEIIK+KGFQVPPAE+EALL++
Sbjct: 398 YLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLIT 457

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I DA VV  KD++AGEVPVAF+VR+ G E+TE+ IK+++AK+VVFYKR++KV F  +
Sbjct: 458 HPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDS 517

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPK+PSGKILRKDL A+LA+ +P
Sbjct: 518 IPKNPSGKILRKDLRARLAAGIP 540

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  213 bits (542), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 127/140 (90%), Gaps = 2/140 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+NDPE+TAATID EG LHTGD+ Y+D D+E+FIVDRVKEIIK+KGFQV PAE+EALL++
Sbjct: 399 YINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVA 458

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQK E AGEVPVAFVV+S+  E++E+ IKE++AKQV+FYK++H+V+FV A
Sbjct: 459 HPSIADAAVVPQKHEEAGEVPVAFVVKSS--EISEQEIKEFVAKQVIFYKKIHRVYFVDA 516

Query: 121 IPKSPSGKILRKDLIAKLAS 140
           IPKSPSGKILRKDL ++LA+
Sbjct: 517 IPKSPSGKILRKDLRSRLAA 536

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9LU36|4CL4_ARATH 4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1

 Score =  202 bits (514), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 115/140 (82%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATA TID +G LHTGDIG+VD DDE+FIVDR+KE+IKFKG+QV PAE+EALL+S
Sbjct: 427 YLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLIS 486

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSI DA VV  KDEVA EVPVAFV RS G +LTE+ +K Y+ KQVV YKR+  V F+  
Sbjct: 487 HPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEV 546

Query: 121 IPKSPSGKILRKDLIAKLAS 140
           IPK+ SGKILRKDL AKL +
Sbjct: 547 IPKAVSGKILRKDLRAKLET 566

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24146|4CL2_TOBAC 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 127/143 (88%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATA TID EG L+TGDIGY+D DDE+FIVDR+KE+IK+KGFQV PAE+EALLL+
Sbjct: 399 YLNDPEATARTIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLN 458

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP+I+DA VVP KDE AGEVPVAFVVRSNG  +TE+ +K++I+KQV+FYKR+ +V FV A
Sbjct: 459 HPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDA 518

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPKSPSGKILRKDL AKLA+ +P
Sbjct: 519 IPKSPSGKILRKDLRAKLAAGLP 541

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  198 bits (504), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 119/142 (83%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDP ATA+TID +G LHTGD+G++D DDE+FIVDR+KE+IK+KGFQV PAE+E+LL+ 
Sbjct: 413 YLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIG 472

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I D  VV  K+E AGEVPVAFVVRS    ++E+ IK++++KQVVFYKR++KV F  +
Sbjct: 473 HPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDS 532

Query: 121 IPKSPSGKILRKDLIAKLASSM 142
           IPK+PSGKILRKDL A+LA+ +
Sbjct: 533 IPKAPSGKILRKDLRARLANGL 554

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
255557999	573	AMP dependent CoA ligase, putative [Rici	1.0	0.253	0.875	4e-68
315419007	574	4CL [Gossypium hirsutum]	0.986	0.249	0.888	1e-67
253509565	573	4-coumarate:CoA ligase 1 [Gossypium hirs	0.986	0.249	0.888	1e-67
225454787	570	PREDICTED: 4-coumarate--CoA ligase 2 [Vi	0.986	0.250	0.874	2e-67
371534669	570	Coumaroyl-CoA ligase [Vitis vinifera]	0.986	0.250	0.874	2e-67
297737319	512	unnamed protein product [Vitis vinifera]	0.986	0.279	0.874	3e-67
268528133	574	4-coumarate:CoA ligase 2 [Gossypium hirs	0.986	0.249	0.874	5e-67
166091746	583	4-coumarate:CoA ligase 1 [Ruta graveolen	1.0	0.248	0.877	3e-66
326366171	604	4-coumarate-CoA ligase [Prunus avium]	0.993	0.238	0.840	4e-65
164523614	582	4-coumarate CoA ligase 1 [Ruta graveolen	1.0	0.249	0.863	1e-64

>gi|255557999|ref|XP_002520028.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223540792|gb|EEF42352.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 127/145 (87%), Positives = 137/145 (94%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATA TIDVEG LHTGDIGYVD DDE+FIVDRVKEIIKFKGFQVPPAE+EALLL+
Sbjct: 429 YLNDPEATANTIDVEGWLHTGDIGYVDDDDEIFIVDRVKEIIKFKGFQVPPAELEALLLN 488

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKDEVAGEVPVAFVVRSNGFEL+EE +KEYIAKQVVFYK+LHKV+F+HA
Sbjct: 489 HPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELSEEDVKEYIAKQVVFYKKLHKVYFIHA 548

Query: 121 IPKSPSGKILRKDLIAKLASSMPLN 145
           IPKSPSGKILRKDL AKLA+  PL+
Sbjct: 549 IPKSPSGKILRKDLKAKLATPSPLS 573

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315419007|gb|ADU15550.1| 4CL [Gossypium hirsutum]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/143 (88%), Positives = 136/143 (95%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLND  ATAATIDVEG LHTGDIGYVD DDE+FIVDRVKEIIKFKGFQVPPAE+E+LL+S
Sbjct: 427 YLNDGVATAATIDVEGWLHTGDIGYVDEDDEIFIVDRVKEIIKFKGFQVPPAELESLLIS 486

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKDEVAGEVPVAFVVRSNGFELTEEA+KE+IAKQVV+YKRLHKVHFVHA
Sbjct: 487 HPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAVKEFIAKQVVYYKRLHKVHFVHA 546

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPKSPSGKILRKDL AKLA++ P
Sbjct: 547 IPKSPSGKILRKDLRAKLAAAAP 569

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253509565|gb|ACT32027.1| 4-coumarate:CoA ligase 1 [Gossypium hirsutum]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/143 (88%), Positives = 136/143 (95%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLND  ATAATIDVEG LHTGDIGYVD DDE+FIVDRVKEIIKFKGFQVPPAE+E+LL+S
Sbjct: 426 YLNDGVATAATIDVEGWLHTGDIGYVDEDDEIFIVDRVKEIIKFKGFQVPPAELESLLIS 485

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKDEVAGEVPVAFVVRSNGFELTEEA+KE+IAKQVV+YKRLHKVHFVHA
Sbjct: 486 HPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAVKEFIAKQVVYYKRLHKVHFVHA 545

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPKSPSGKILRKDL AKLA++ P
Sbjct: 546 IPKSPSGKILRKDLRAKLAAAAP 568

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454787|ref|XP_002274994.1| PREDICTED: 4-coumarate--CoA ligase 2 [Vitis vinifera]

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 136/143 (95%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATA+TIDV+G LHTGDIGYVD D+EVFIVDRVKE+IKFKGFQVPPAE+EALL+S
Sbjct: 425 YLNDPEATASTIDVDGWLHTGDIGYVDDDEEVFIVDRVKELIKFKGFQVPPAELEALLVS 484

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKD+VAGEVPVAFVVRSNGFELTEEA+KE+I+KQVVFYKRLHKV+FVHA
Sbjct: 485 HPSIADAAVVPQKDDVAGEVPVAFVVRSNGFELTEEAVKEFISKQVVFYKRLHKVYFVHA 544

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPKSPSGKILRKDL AKLA   P
Sbjct: 545 IPKSPSGKILRKDLRAKLAEKTP 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|371534669|gb|AEX32786.1| Coumaroyl-CoA ligase [Vitis vinifera]

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 136/143 (95%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATA+TIDV+G LHTGDIGYVD D+EVFIVDRVKE+IKFKGFQVPPAE+EALL+S
Sbjct: 425 YLNDPEATASTIDVDGWLHTGDIGYVDDDEEVFIVDRVKELIKFKGFQVPPAELEALLVS 484

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKD+VAGEVPVAFVVRSNGFELTEEA+KE+I+KQVVFYKRLHKV+FVHA
Sbjct: 485 HPSIADAAVVPQKDDVAGEVPVAFVVRSNGFELTEEAVKEFISKQVVFYKRLHKVYFVHA 544

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPKSPSGKILRKDL AKLA   P
Sbjct: 545 IPKSPSGKILRKDLRAKLAEKTP 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737319|emb|CBI26520.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 136/143 (95%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATA+TIDV+G LHTGDIGYVD D+EVFIVDRVKE+IKFKGFQVPPAE+EALL+S
Sbjct: 367 YLNDPEATASTIDVDGWLHTGDIGYVDDDEEVFIVDRVKELIKFKGFQVPPAELEALLVS 426

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKD+VAGEVPVAFVVRSNGFELTEEA+KE+I+KQVVFYKRLHKV+FVHA
Sbjct: 427 HPSIADAAVVPQKDDVAGEVPVAFVVRSNGFELTEEAVKEFISKQVVFYKRLHKVYFVHA 486

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPKSPSGKILRKDL AKLA   P
Sbjct: 487 IPKSPSGKILRKDLRAKLAEKTP 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268528133|gb|ACZ06243.1| 4-coumarate:CoA ligase 2 [Gossypium hirsutum]

 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 135/143 (94%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLND  ATAAT DVEG LHTGDIGYVD DDE+FIVDRVKEIIKFKGFQVPPAE+E+LL+S
Sbjct: 427 YLNDSVATAATTDVEGWLHTGDIGYVDEDDEIFIVDRVKEIIKFKGFQVPPAELESLLIS 486

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKDEVAGEVPVAFVVRSNGFELTEEA+KE+IA+QVV+YKRLHKVHFVHA
Sbjct: 487 HPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAVKEFIARQVVYYKRLHKVHFVHA 546

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IPKSPSGKILRKDL AKLA++ P
Sbjct: 547 IPKSPSGKILRKDLRAKLAAAAP 569

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166091746|gb|ABY81910.1| 4-coumarate:CoA ligase 1 [Ruta graveolens]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 133/147 (90%), Gaps = 2/147 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATAATIDVEG LHTGDIGYVD DDEVFIVDRVKEIIKFKGFQVPPAEIEALL+ 
Sbjct: 437 YLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKEIIKFKGFQVPPAEIEALLIG 496

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKDE AGEVPVAFVV SNGFE TEE+ KEYIAKQVVFYKRLH+V+FV A
Sbjct: 497 HPSIADAAVVPQKDEAAGEVPVAFVVGSNGFEQTEESTKEYIAKQVVFYKRLHRVYFVDA 556

Query: 121 IPKSPSGKILRKDLIAKLAS--SMPLN 145
           IPKSPSGKILRK L AKLAS  SMPL 
Sbjct: 557 IPKSPSGKILRKGLRAKLASSTSMPLT 583

Source: Ruta graveolens

Species: Ruta graveolens

Genus: Ruta

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326366171|gb|ADZ54779.1| 4-coumarate-CoA ligase [Prunus avium]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 133/144 (92%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLND EATA T+D EG LHTGD+GYVD D+EVFIVDRVKE+IKFKGFQVPPAE+E+LL+S
Sbjct: 460 YLNDAEATATTVDKEGWLHTGDVGYVDDDEEVFIVDRVKELIKFKGFQVPPAELESLLVS 519

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKDE AGEVPVAFVVRSNG +LTEEA+KE+IAKQVVFYKRLHKV+FVHA
Sbjct: 520 HPSIADAAVVPQKDEAAGEVPVAFVVRSNGLQLTEEAVKEFIAKQVVFYKRLHKVYFVHA 579

Query: 121 IPKSPSGKILRKDLIAKLASSMPL 144
           IPKSPSGKILRKDL AKLA+  PL
Sbjct: 580 IPKSPSGKILRKDLRAKLATPTPL 603

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164523614|gb|ABY60842.1| 4-coumarate CoA ligase 1 [Ruta graveolens]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 131/147 (89%), Gaps = 2/147 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATAATIDVEG LHTGDIGYVD DDEVFIVDRVKEIIKFKGFQVPPAEIEALL+ 
Sbjct: 436 YLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKEIIKFKGFQVPPAEIEALLIG 495

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVPQKDE A EVPVAFVV SNGF  TEE+ KEYIAKQVVFYKRLH+V+FV A
Sbjct: 496 HPSIADAAVVPQKDEAAAEVPVAFVVGSNGFVQTEESTKEYIAKQVVFYKRLHRVYFVDA 555

Query: 121 IPKSPSGKILRKDLIAKLAS--SMPLN 145
           IPKSPSGKILRK L AKLAS  SMPL 
Sbjct: 556 IPKSPSGKILRKGLRAKLASSTSMPLT 582

Source: Ruta graveolens

Species: Ruta graveolens

Genus: Ruta

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.951	0.245	0.826	1.4e-57
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.951	0.242	0.717	1.4e-48
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.979	0.253	0.661	6e-48
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.979	0.255	0.647	2.6e-47
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.979	0.261	0.563	4.6e-41
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.965	0.256	0.581	1.2e-40
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.965	0.254	0.546	1.1e-37
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.965	0.247	0.560	1.3e-36
TAIR|locus:2015499	542	ACOS5 "acyl-CoA synthetase 5"	0.965	0.258	0.55	7.2e-36
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.951	0.245	0.517	4.2e-35

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 114/138 (82%), Positives = 127/138 (92%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             YLNDPEAT+ATID EG LHTGDIGYVD DDE+FIVDR+KE+IKFKGFQVPPAE+E+LL++
Sbjct:   423 YLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPPAELESLLIN 482

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             H SIADA VVPQ DEVAGEVPVAFVVRSNG ++TEE +KEY+AKQVVFYKRLHKV FV +
Sbjct:   483 HHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVAS 542

Query:   121 IPKSPSGKILRKDLIAKL 138
             IPKSPSGKILRKDL AKL
Sbjct:   543 IPKSPSGKILRKDLKAKL 560

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 99/138 (71%), Positives = 114/138 (82%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             YLNDPEATA TID +G LHTGDIG+VD DDE+FIVDR+KE+IKFKG+QV PAE+EALL+S
Sbjct:   427 YLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLIS 486

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HPSI DA VV  KDEVA EVPVAFV RS G +LTE+ +K Y+ KQVV YKR+  V F+  
Sbjct:   487 HPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEV 546

Query:   121 IPKSPSGKILRKDLIAKL 138
             IPK+ SGKILRKDL AKL
Sbjct:   547 IPKAVSGKILRKDLRAKL 564

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 94/142 (66%), Positives = 118/142 (83%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             YLN+P ATA TID +G LHTGDIG +D DDE+FIVDR+KE+IK+KGFQV PAE+EALL+ 
Sbjct:   420 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIG 479

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HP I D  VV  K+E AGEVPVAFVV+S   EL+E+ +K++++KQVVFYKR++KV F  +
Sbjct:   480 HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTES 539

Query:   121 IPKSPSGKILRKDLIAKLASSM 142
             IPK+PSGKILRKDL AKLA+ +
Sbjct:   540 IPKAPSGKILRKDLRAKLANGL 561

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 92/142 (64%), Positives = 119/142 (83%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             YLNDP ATA+TID +G LHTGD+G++D DDE+FIVDR+KE+IK+KGFQV PAE+E+LL+ 
Sbjct:   413 YLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIG 472

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HP I D  VV  K+E AGEVPVAFVVRS    ++E+ IK++++KQVVFYKR++KV F  +
Sbjct:   473 HPEINDVAVVAMKEEDAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDS 532

Query:   121 IPKSPSGKILRKDLIAKLASSM 142
             IPK+PSGKILRKDL A+LA+ +
Sbjct:   533 IPKAPSGKILRKDLRARLANGL 554

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 80/142 (56%), Positives = 110/142 (77%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             YLN+P+AT  TID +  +HTGD+GY + D  +++VDR+KE+IK+KGFQV PAE+E LL+S
Sbjct:   403 YLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVS 462

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HP I DA V+P  DE AGEVP+AFVVRS    +TE+ I+++IAKQV  YKRL +V F+  
Sbjct:   463 HPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISL 522

Query:   121 IPKSPSGKILRKDLIAKLASSM 142
             +PKS +GKILR++L+ ++ S M
Sbjct:   523 VPKSAAGKILRRELVQQVRSKM 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 82/141 (58%), Positives = 111/141 (78%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             Y ++ EAT++T+D EG L TGD+ Y+D D  +F+VDR+KE+IK+KG+QV PAE+EALLL+
Sbjct:   403 YFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLT 462

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HP I DA V+P  D+  G+ P+A+VVR  G  L+E+ I E++AKQV  YKR+ KV FV +
Sbjct:   463 HPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSS 522

Query:   121 IPKSPSGKILRKDLIAKLASS 141
             IPK+PSGKILRKDLI K+A+S
Sbjct:   523 IPKNPSGKILRKDLI-KIATS 542

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 77/141 (54%), Positives = 110/141 (78%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             Y  + EAT  TI++EG L TGD+ Y+D D  +F+VDR+KE+IK+KG+QVPPAE+EALL++
Sbjct:   409 YFKNQEATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLIT 468

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HP I DA V+P  D+ AG+ P+A+VVR +   L+E+ + ++I+KQV  YK++ KV F+++
Sbjct:   469 HPDILDAAVIPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINS 528

Query:   121 IPKSPSGKILRKDLIAKLASS 141
             IPK+ SGK LRKDLI KLA+S
Sbjct:   529 IPKTASGKTLRKDLI-KLATS 548

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 79/141 (56%), Positives = 105/141 (74%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             Y  + EATA+TID EG L TGD+ Y+D D  VF+VDR+KE+IK  G+QV PAE+EALLL+
Sbjct:   424 YFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLA 483

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HP IADA V+P  D  AG+ P+A++VR  G  L+E  I  ++AKQV  YK++ KV F+ +
Sbjct:   484 HPEIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLAS 543

Query:   121 IPKSPSGKILRKDLIAKLASS 141
             IPK+PSGKILR++L  KL +S
Sbjct:   544 IPKNPSGKILRREL-TKLTTS 563

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 77/140 (55%), Positives = 99/140 (70%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             Y  + E T  TID +G LHTGDIGY+D D ++FIVDR+KE+IK+KGFQV PAE+EA+LL+
Sbjct:   399 YFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT 458

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             HPS+ D  VVP  DE AGE+P A VV +      EE I  ++A  V  YK++  VHFV +
Sbjct:   459 HPSVEDVAVVPLPDEEAGEIPAACVVINPKATEKEEDILNFVAANVAHYKKVRAVHFVDS 518

Query:   121 IPKSPSGKILRKDLIAKLAS 140
             IPKS SGKI+R+ L  K+ S
Sbjct:   519 IPKSLSGKIMRRLLRDKILS 538

GO:0003824 "catalytic activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS;IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031956 "medium-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP;TAS

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 4.2e-35, P = 4.2e-35
 Identities = 72/139 (51%), Positives = 105/139 (75%)

Query:     1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             Y+ + +A+A T+D EG L TGD+ Y D +D ++IVDR+KE+IK+K +QVPP E+E +L S
Sbjct:   417 YVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELEQILHS 476

Query:    61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
             +P + DA VVP  DE AGE+P+AF+VR  G  L E  I +++AKQV  YK++ +V F++A
Sbjct:   477 NPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINA 536

Query:   121 IPKSPSGKILRKDLIAKLA 139
             IPK+P+GKILR++L  K+A
Sbjct:   537 IPKNPAGKILRREL-TKIA 554

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42982	4CL2_ORYSJ	6, ., 2, ., 1, ., 1, 2	0.8226	0.9724	0.2478	yes	no
Q9S777	4CL3_ARATH	6, ., 2, ., 1, ., 1, 2	0.8201	0.9586	0.2477	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-99
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-83
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-65
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-57
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	4e-52
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-48
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	9e-48
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-46
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	8e-45
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-43
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-42
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-41
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-40
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-38
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-36
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-34
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-33
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-32
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-31
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	4e-31
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-30
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-30
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	6e-30
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-29
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-29
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	9e-29
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-28
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-28
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-28
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-28
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	6e-28
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	7e-28
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	7e-28
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-27
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-27
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-27
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	6e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-26
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-26
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	5e-26
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-25
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-25
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-25
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-25
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	3e-25
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-25
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-24
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-24
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-24
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-24
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-24
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-23
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-23
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-23
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-23
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-23
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	8e-23
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-22
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-22
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	5e-22
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-22
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	7e-22
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-21
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-21
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-21
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-21
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-21
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	4e-21
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	4e-21
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	8e-21
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-20
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-20
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-20
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-20
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-20
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	6e-20
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-19
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-19
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	8e-19
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-18
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	1e-18
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-18
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-18
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-18
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	5e-18
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-17
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-17
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-17
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-17
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-17
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-17
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-17
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-17
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	4e-17
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	5e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-16
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-16
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	1e-16
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-16
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-16
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-16
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	6e-16
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	9e-16
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-15
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-15
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	4e-15
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	5e-14
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-13
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-13
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-13
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-13
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-13
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	5e-13
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	5e-13
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-12
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-12
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-11
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-11
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-11
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-11
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	4e-11
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	8e-11
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	8e-11
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-10
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-10
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-10
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	9e-10
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-09
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-09
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	4e-08
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-08
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	8e-08
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	9e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-07
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	7e-07
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	8e-07
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	1e-06
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-06
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	9e-06
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	2e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-05
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	9e-05
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	1e-04
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	1e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-04
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	4e-04
TIGR02372	386	TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase	0.003

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  294 bits (756), Expect = 2e-99
 Identities = 111/140 (79%), Positives = 128/140 (91%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEATA TID +G LHTGDIGY+D DDE+FIVDR+KE+IK+KGFQV PAE+EALL+S
Sbjct: 397 YLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIS 456

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPSIADA VVP KDEVAGEVPVAFVVRSNG E+TE+ IK+++AKQVVFYKR+HKV FV +
Sbjct: 457 HPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDS 516

Query: 121 IPKSPSGKILRKDLIAKLAS 140
           IPK+PSGKILRKDL AKLA+
Sbjct: 517 IPKAPSGKILRKDLRAKLAA 536

Length = 537

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  253 bits (649), Expect = 1e-83
 Identities = 90/134 (67%), Positives = 111/134 (82%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN+PEATA TID +G LHTGD+GY D D  +FIVDR+KE+IK+KGFQV PAE+EALLLS
Sbjct: 371 YLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLS 430

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP IADA V+P  DE AGE+P+AFVVR  G EL+E+ + +++AKQV  YK++ KV FV A
Sbjct: 431 HPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVMQFVAKQVAPYKKVRKVVFVDA 490

Query: 121 IPKSPSGKILRKDL 134
           IPKSPSGKILR++L
Sbjct: 491 IPKSPSGKILRREL 504

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  205 bits (525), Expect = 2e-65
 Identities = 82/131 (62%), Positives = 101/131 (77%), Gaps = 1/131 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN+PEAT  TID +G LHTGDIGY D D   +IVDR KE+IK+KG+QVPPAE+EA+LL 
Sbjct: 357 YLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLE 416

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK-VHFVH 119
           HP +ADA V+   DEVAGE+P A+VV   G +LTE+ +K+Y+AK+V  YK+L   V FV 
Sbjct: 417 HPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVVFVD 476

Query: 120 AIPKSPSGKIL 130
            IPKSPSGKIL
Sbjct: 477 EIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  186 bits (475), Expect = 2e-57
 Identities = 81/141 (57%), Positives = 107/141 (75%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN+P+AT +TID +G L TGDI Y D D  ++IVDR+KEIIK+KGFQ+ PA++EA+L+S
Sbjct: 415 YLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLIS 474

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I DA V    D+  GE+PVAFVVR  G  L++EA+  Y+AKQV  YK++ KV FV +
Sbjct: 475 HPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQS 534

Query: 121 IPKSPSGKILRKDLIAKLASS 141
           IPKSP+GKILR++L   L +S
Sbjct: 535 IPKSPAGKILRRELKRSLTNS 555

Length = 560

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  172 bits (438), Expect = 4e-52
 Identities = 78/142 (54%), Positives = 102/142 (71%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+ E T  TID +G LHTGDIGY+D D ++FIVDR+KE+IK+KGFQV PAE+EA+LL+
Sbjct: 402 YYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT 461

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HPS+ DA VVP  DE AGE+P A VV +   + +EE I  ++A  V  YK++  V FV +
Sbjct: 462 HPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDS 521

Query: 121 IPKSPSGKILRKDLIAKLASSM 142
           IPKS SGKI+R+ L  K+ S  
Sbjct: 522 IPKSLSGKIMRRLLKEKMLSIN 543

Length = 546

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  159 bits (404), Expect = 1e-48
 Identities = 63/134 (47%), Positives = 84/134 (62%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y NDPEATA  ID +G LHTGD+GY+D D  + IV R+K++I   G  + PAEIE  LL+
Sbjct: 213 YYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLT 272

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++A+A VV   DE  GEV  AFVV   G  LTEE +  +   ++  +K    V FV  
Sbjct: 273 HPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGRLARFKVPRYVRFVDE 332

Query: 121 IPKSPSGKILRKDL 134
           +P++ SGKI +  L
Sbjct: 333 LPRTASGKIQKFKL 346

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  160 bits (407), Expect = 9e-48
 Identities = 62/141 (43%), Positives = 85/141 (60%), Gaps = 2/141 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PEATA   D +G L TGD+GYVD D  ++IV R+K++I   G  + P EIEA+L  
Sbjct: 386 YWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAE 445

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF--ELTEEAIKEYIAKQVVFYKRLHKVHFV 118
           HP++A+A VV   DE  GE  VA VV   G   ELT E ++ ++ K++  YK    V FV
Sbjct: 446 HPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFV 505

Query: 119 HAIPKSPSGKILRKDLIAKLA 139
             +P++ SGKI R+ L  +  
Sbjct: 506 DELPRTASGKIDRRALREEYR 526

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  156 bits (396), Expect = 2e-46
 Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PE TA  +  +G L TGDIGY+D D   +IVDR K++I   GF V P EIE +L S
Sbjct: 335 YWNRPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYS 393

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ +A VV   D   GE   AFVV   G  LTEE +  +  +++  YK   +V F   
Sbjct: 394 HPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRERLAAYKVPRQVEFRDE 453

Query: 121 IPKSPSGKILRKDL 134
           +PKS  GKILR++L
Sbjct: 454 LPKSAVGKILRREL 467

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  152 bits (387), Expect = 8e-45
 Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 1/139 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PEATA TID  G LHTGD+GY+D D  ++I DR+K++I   G  + P E+E  L  
Sbjct: 381 YWNRPEATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYG 439

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++A+  V+   DE  GE PVA VV   G  L  + ++ ++  ++  +K   ++ FV  
Sbjct: 440 HPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDE 499

Query: 121 IPKSPSGKILRKDLIAKLA 139
           +P++  GKIL++ L  + A
Sbjct: 500 LPRTSVGKILKRVLREQYA 518

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  148 bits (376), Expect = 3e-43
 Identities = 61/137 (44%), Positives = 88/137 (64%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y +DPEATAA ID +G LHTGD+G +D +  ++IVDR K++    GF V PAE+E +L  
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYE 436

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++A+A V+   DE  GEV  A+VV   G ELTEE +  Y  + +  YK    + F+  
Sbjct: 437 HPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDE 496

Query: 121 IPKSPSGKILRKDLIAK 137
           +PK+ +GK+L++ L  K
Sbjct: 497 LPKNATGKVLKRALREK 513

Length = 513

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  142 bits (362), Expect = 2e-42
 Identities = 60/136 (44%), Positives = 85/136 (62%), Gaps = 5/136 (3%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PEATA  +  +G LHTGD+GY+D D  ++IVDR K++I   G  + PAE+E +LL+
Sbjct: 209 YWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLA 267

Query: 61  HPSIADATV--VPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV 118
           HP++AD  V  VP  DE  GE  VA VV   G  L  E +  +  +++  YK    V FV
Sbjct: 268 HPAVADVAVIGVP--DEEWGEAVVAVVVLRPGATLDAEELIAFCRERLAGYKVPKSVEFV 325

Query: 119 HAIPKSPSGKILRKDL 134
             +P++ SGKIL+++L
Sbjct: 326 DELPRNASGKILKREL 341

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  140 bits (355), Expect = 1e-41
 Identities = 53/130 (40%), Positives = 78/130 (60%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+P  T A    +G   TGD+GY+D +  ++I  R K++IK  G  V PAE+E++LL 
Sbjct: 209 YWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQ 268

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++A+A VV   DE  GE  VAFVV   G +   E +K ++ +++  YK    + FV  
Sbjct: 269 HPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVIEFVDE 328

Query: 121 IPKSPSGKIL 130
           +PK+ SGKI 
Sbjct: 329 LPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  138 bits (350), Expect = 4e-40
 Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 1   YLNDPEATAAT---IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           Y N PEATA +   +D +    TGD+GY+D +   F +DRVK +I   G++V PAE+EAL
Sbjct: 292 YWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEAL 351

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFE--LTEEAIKEYIAKQVVFYKRLHKV 115
           L  HP++ +  V+ + D   GEV  AFVV    +   +TEE I E+  +++  YK    +
Sbjct: 352 LYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRII 411

Query: 116 HFVHAIPKSPSGKILRKDL 134
            FV  +PK+ SGK+L + L
Sbjct: 412 EFVDELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  133 bits (338), Expect = 2e-38
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 2/136 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL     T    D +G  HTGD+GY+D +  ++++ R  ++I   G  + P EIEA+LL 
Sbjct: 274 YLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQ 332

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ +A VV   D+  G+ PVAFVV  N   ++ E ++ ++A ++  YKR  + + +  
Sbjct: 333 HPAVEEAAVVGVPDDEWGQRPVAFVV-PNDDPVSVEELQAFLADKLAKYKRPKRWYPLPE 391

Query: 121 IPKSPSGKILRKDLIA 136
           +P++ SGKI R  L  
Sbjct: 392 LPRNASGKIDRAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  126 bits (320), Expect = 3e-36
 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN+PEA       +G   TGD+GY+D D  +F+  R+KE+I   G ++ P E+E +LL 
Sbjct: 211 YLNNPEANREA-FRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLR 269

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++A+A V    DE+ GE   A VV     ++T E ++++  K++  +K   K+ FV A
Sbjct: 270 HPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKILFVDA 329

Query: 121 IPKSPSGKILR 131
           +PK  +GKI R
Sbjct: 330 LPKGATGKIQR 340

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  125 bits (315), Expect = 1e-34
 Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 3/138 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN  +AT  T   +G   TGDIGY+D +  ++++DR  ++I   G  + PAEIE +LLS
Sbjct: 346 YLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLS 404

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP +A+A VV   D+  G+VPVAFVV+    E+TEE ++ +  +++  YK   + +FV  
Sbjct: 405 HPGVAEAGVVGVPDDKWGQVPVAFVVK--SGEVTEEELRHFCEEKLAKYKVPKRFYFVEE 462

Query: 121 IPKSPSGKILRKDLIAKL 138
           +P++ SGK+LR +L   +
Sbjct: 463 LPRNASGKLLRHELKQLV 480

Length = 483

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  120 bits (303), Expect = 1e-33
 Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 1   YLNDPEATAATIDV-----EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIE 55
           Y NDPEATA  +       E +L+TGD+  +D +  ++ V R  ++IK +G++V P EIE
Sbjct: 211 YWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIE 270

Query: 56  ALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKV 115
            ++ +HP +A+A V+   D + G+  VA VV ++G  L E+ + ++  K +  Y    ++
Sbjct: 271 EVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKHCRKHLPNYMVPAEI 330

Query: 116 HFVHAIPKSPSGKILRKDL 134
            FV ++PK+ +GK+ R  L
Sbjct: 331 VFVDSLPKNANGKVDRSAL 349

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  117 bits (295), Expect = 5e-32
 Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PEATA      G  HTGD G  D D  ++ VDR K+ I+ +G  +   E+EA +L+
Sbjct: 288 YYGMPEATAKAWR-NGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILA 346

Query: 61  HPSIADATVVPQKDEVAG-EVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVH 119
           HP++A+A VV    E+   EV    V+R  G  L  EA+ E+   ++ ++     + FV 
Sbjct: 347 HPAVAEAAVVAVPSELGEDEVKAVVVLR-PGETLDPEALLEFCRDRLPYFMVPRYIEFVD 405

Query: 120 AIPKSPSGKILRKDL 134
            +PK+P+ KI + +L
Sbjct: 406 ELPKTPTEKIQKAEL 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  116 bits (292), Expect = 3e-31
 Identities = 54/139 (38%), Positives = 83/139 (59%), Gaps = 2/139 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PEATA  +  +G LHTGDIG +D    +  + R KE++K  G  V P+E+EALL  
Sbjct: 428 YWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQ 486

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++  + VV + D   G+VPVAFV    G +LT  A++ +  + +  YK + ++  V A
Sbjct: 487 HPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYK-VPEIRIVDA 545

Query: 121 IPKSPSGKILRKDLIAKLA 139
           +P + +GK+ ++DL A   
Sbjct: 546 LPMTATGKVRKQDLQALAE 564

Length = 567

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (292), Expect = 4e-31
 Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N P+ TA  +  +G   TGD+G +D      IVDR K++I   GF V P EIE ++ S
Sbjct: 420 YWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVAS 479

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP + +   V   DE +GE    FVV+ +   LTEE +K +  +++  YKR   V F   
Sbjct: 480 HPGVLEVAAVGVPDEHSGEAVKLFVVKKDP-ALTEEDVKAFCKERLTNYKRPKFVEFRTE 538

Query: 121 IPKSPSGKILRKDL 134
           +PK+  GKILR++L
Sbjct: 539 LPKTNVGKILRREL 552

Length = 557

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  114 bits (287), Expect = 1e-30
 Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  DPE T   +  +G   TGD+  +D D  + I DR K++IK  G  +   E+E  L++
Sbjct: 383 YYKDPEKTEE-LTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMA 441

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++A+A VV    E  GE P+A VV   G ++TEE + E++AK+V  +    +V FV  
Sbjct: 442 HPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKKVAKWWLPDRVVFVDE 501

Query: 121 IPKSPSGKILRKDL 134
           IPK+  GK  +K L
Sbjct: 502 IPKTSVGKFDKKAL 515

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  113 bits (285), Expect = 2e-30
 Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y NDPE             TGD    D D   ++  R  ++IK  G ++ P EIE++LL+
Sbjct: 382 YWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLA 440

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE--EAIKEYIAKQVVFYKRLHKVHFV 118
           HP++A+A VV   D   G++ +AFVV + G E  E  E I+ ++A+ +  +    K+ FV
Sbjct: 441 HPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFV 500

Query: 119 HAIPKSPSGKILR 131
             +PK+ SGKI R
Sbjct: 501 DELPKTASGKIQR 513

Length = 528

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  111 bits (280), Expect = 6e-30
 Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL DPE T ATI       TGD    D D   + V R  ++IK  G+++ P E+E+ L+ 
Sbjct: 293 YLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIE 351

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKE---YIAKQVVFYKRLHKVHF 117
           HP++A+A VV   D V GEV  AFVV + G++ +EE  KE   ++ K+   YK   ++ F
Sbjct: 352 HPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEF 411

Query: 118 VHAIPKSPSGKILRKDL 134
           V  +PK+ SGKI R +L
Sbjct: 412 VEELPKTVSGKIRRVEL 428

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  110 bits (278), Expect = 2e-29
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE  A     +G   TGD+  +D D    +V R+K+ I   G ++ P EIE LLLS
Sbjct: 349 YYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLS 408

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
           HP++ADA VV   DEV GE   AFVV   G   T   ++ ++  + +  +K   ++  V 
Sbjct: 409 HPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQGLAKFKLPDRLEVVD 468

Query: 120 AIPKSPSGKILRKDL 134
           ++P +P GK+ +K L
Sbjct: 469 SLPLTPVGKVDKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  110 bits (278), Expect = 2e-29
 Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 5/135 (3%)

Query: 1   YLNDPEATAAT-IDVEGL--LHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           Y N PEATA   I+++G     TGD+G +D +   FI DR+K +I   GF+V PAE+E L
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENL 457

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFE--LTEEAIKEYIAKQVVFYKRLHKV 115
           L  HP+I +A V+   D   GE   A VV         TEE I  +  + +  YK    V
Sbjct: 458 LYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIV 517

Query: 116 HFVHAIPKSPSGKIL 130
            FV ++PKS SGKIL
Sbjct: 518 EFVDSLPKSGSGKIL 532

Length = 546

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  108 bits (272), Expect = 9e-29
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKE-IIKFKGFQVPPAEIEALLL 59
           Y N PEATA     +G   TGD+G VD D    I+ R  + IIK  G++V   EIE  LL
Sbjct: 299 YWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALL 358

Query: 60  SHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVH 119
            HP +A+  V+   D   GE  VA VV   G  LT   ++ +  +++  YK   +V  V 
Sbjct: 359 EHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVVD 418

Query: 120 AIPKSPSGKILR 131
            +P++  GK+ +
Sbjct: 419 ELPRNAMGKVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  108 bits (273), Expect = 1e-28
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PE TA +  ++G   TGD+  ++ D  + IVDR+KE+I   GF V PAE+E +L  
Sbjct: 431 YWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLRE 489

Query: 61  HPSIADATVV--PQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV 118
           HP + DA VV  P++D    E  VA VV   G  L  E ++ Y  + +  YK   + + V
Sbjct: 490 HPGVEDAAVVGLPRED--GSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHV 547

Query: 119 HAIPKSPSGKILRKDLIAKLAS 140
             +P+   GK+ R+++  +L  
Sbjct: 548 DELPRDQLGKVRRREVREELLE 569

Length = 573

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  108 bits (272), Expect = 2e-28
 Identities = 54/142 (38%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y NDPE TA  ID +G +HTGD+  +D +  V IV R+K++I   G  + P EIE  L +
Sbjct: 412 YWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYT 471

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I D  VV   DE  GE   A+++   G  LTEE ++++   ++  YK    + FV  
Sbjct: 472 HPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDE 531

Query: 121 IPKSPSGKI----LRKDLIAKL 138
            P + +GKI    +R+ +I +L
Sbjct: 532 FPMTVTGKIQKFKMREMMIEEL 553

Length = 559

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  106 bits (266), Expect = 5e-28
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+PEATAA       L TGD+G  D D  ++   R  ++IK  G+++ PAEIE  LL 
Sbjct: 302 YWNNPEATAAKF-AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLK 360

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHF 117
           HP++ +A VV   D   GE+  AFVV + G E ++E    ++E +  ++  ++   ++ F
Sbjct: 361 HPAVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEF 420

Query: 118 VHAIPKSPSGKILRKDL 134
           V  +P + +GKI R++L
Sbjct: 421 VDELPMTTTGKIRRREL 437

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  107 bits (268), Expect = 5e-28
 Identities = 50/134 (37%), Positives = 75/134 (55%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  DP+ATA  ++ +G LHTGD GYVD +   + VDR   +IK  G  V   E+E ++ +
Sbjct: 383 YYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAT 442

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     
Sbjct: 443 HPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKD 502

Query: 121 IPKSPSGKILRKDL 134
           +P++ SGKI++K+L
Sbjct: 503 LPRNCSGKIIKKNL 516

Length = 517

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  106 bits (266), Expect = 6e-28
 Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 2/137 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL+ P+ T A  D +G   TGD+G +D D  + I  R K+II   G  +   EIE LLL 
Sbjct: 302 YLDPPDNTEAFTD-DGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLR 360

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
           HP++A+  VV   DE  GE   A VV + G  LT   + E++ A+ +   K   ++  V 
Sbjct: 361 HPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPERLEVVD 420

Query: 120 AIPKSPSGKILRKDLIA 136
           A+P++PSGK+ + +L  
Sbjct: 421 ALPRTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  106 bits (266), Expect = 7e-28
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 4/139 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL + E  A++  V+G   TGD+ Y D D   + V R  ++IK  G  V P E+E+ L+ 
Sbjct: 306 YLGNEERYASSF-VDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALME 364

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHF 117
           HP++A+A V+ + D VAGE+  AFV    GFE +EE    +  +  +++       ++HF
Sbjct: 365 HPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHF 424

Query: 118 VHAIPKSPSGKILRKDLIA 136
           V  +PK+ SGKI+R+ L A
Sbjct: 425 VDNLPKTRSGKIMRRLLKA 443

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  105 bits (265), Expect = 7e-28
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+ DPE TAA     G   TGD  Y D D  ++ V R  ++ K   +++ P E+E+ LL 
Sbjct: 294 YMGDPEKTAAAF-RGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLE 352

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHF 117
           HP++A+A VVP  D +   VP A++V   G+E + E    +  ++ +++  YKR+ ++ F
Sbjct: 353 HPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEF 412

Query: 118 VHAIPKSPSGKILRKDL 134
           V  +PK+ SGKI R +L
Sbjct: 413 VGELPKTISGKIRRVEL 429

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  106 bits (266), Expect = 1e-27
 Identities = 50/134 (37%), Positives = 71/134 (52%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PEAT   +D +G L TGDI  +  D  + IVDR K++I   GF V P E+E +L +
Sbjct: 418 YWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAA 477

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P +     +   DE +GE    FVV   G  LT+E + E++   +  YK    V F   
Sbjct: 478 LPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDE 537

Query: 121 IPKSPSGKILRKDL 134
           +P +  GKILR++L
Sbjct: 538 LPTTNVGKILRREL 551

Length = 562

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  104 bits (262), Expect = 4e-27
 Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 6/136 (4%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  +PEAT       G  H+GD+  V  D  + I DR K+II   G  +   E+E +L  
Sbjct: 387 YYKNPEATEEAF-AGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYK 445

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ +A VV + DE  GE P AFVV   G  +TEE + EY  +++  +K    V FV  
Sbjct: 446 HPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEELIEYCREKLAHFKVPKTVEFV-E 504

Query: 121 IPKSPSGKI----LRK 132
           +PK+ +GKI    LR+
Sbjct: 505 LPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  104 bits (260), Expect = 6e-27
 Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PEATA  +D EG   TGDI  +D D  V IVDR K++I   GF V P EIE ++++
Sbjct: 426 YWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMA 485

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP +A+   +   DE +GE    FVV  +   L+ E +K Y  +    YK    +    +
Sbjct: 486 HPKVANCAAIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDS 544

Query: 121 IPKSPSGKILRKDL 134
           +P +P GKILR++L
Sbjct: 545 LPMTPVGKILRREL 558

Length = 562

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  103 bits (260), Expect = 6e-27
 Identities = 51/137 (37%), Positives = 84/137 (61%), Gaps = 3/137 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVK-EIIKFKGFQVPPAEIEALLL 59
           YLN P+ATAA    +G   TGD+  VD D    IV R   ++IK  G+++   EIE  LL
Sbjct: 335 YLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALL 394

Query: 60  SHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVH 119
            HP + +A VV   D+  G+  VA+VV ++  ++  + + +++A+Q+  +KR  +V FV 
Sbjct: 395 GHPGVREAAVVGVPDDDLGQRIVAYVVGAD--DVAADELIDFVAQQLSVHKRPREVRFVD 452

Query: 120 AIPKSPSGKILRKDLIA 136
           A+P++  GK+L+K L++
Sbjct: 453 ALPRNAMGKVLKKQLLS 469

Length = 471

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  103 bits (259), Expect = 1e-26
 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 4/144 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+PEATA +ID +G +HTGD+  +D    V IV R K++I   G  + P EIE  L +
Sbjct: 413 YWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFT 472

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++AD  V    DE  GE  VA+V    G   +EE ++E+   ++  +K      FV  
Sbjct: 473 HPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDE 532

Query: 121 IPKSPSGKI----LRKDLIAKLAS 140
            P + +GK+    +R+  I +LA 
Sbjct: 533 FPMTVTGKVQKFRMREISIEELAL 556

Length = 558

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  101 bits (255), Expect = 4e-26
 Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y +DPE TA      G  H+GD+G +D +  + +VDR K++IK  G  V   E+E  L +
Sbjct: 381 YWDDPEKTAEAFR-GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYT 439

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++A+  V+   D    E   A VV   G  +TE+ +  +   ++  +K   +V FV  
Sbjct: 440 HPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDE 499

Query: 121 IPKSPSGKILRKDL 134
           +P++PSGKIL+++L
Sbjct: 500 LPRNPSGKILKREL 513

Length = 523

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  101 bits (254), Expect = 5e-26
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+PEA A     +G   TGD+G++D    ++I  R  ++    G  V P EIE  LL+
Sbjct: 380 YYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLT 438

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++++  V+   D V GEV VA  V  +G  + E  +  ++  +V  YK   +  F  A
Sbjct: 439 HPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDA 498

Query: 121 IPKSPSGKILRKDLIAKL 138
           +PKS  GKI +K +  +L
Sbjct: 499 LPKSGYGKITKKMVREEL 516

Length = 528

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (252), Expect = 1e-25
 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 2/134 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PEAT   I  +G L TGDI  +D +  + IVDR K++I   GF V P EIE +++ 
Sbjct: 418 YWQRPEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVML 476

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP + +   V    EV+GE    FVV+ +   LTEE +  +  + +  YK    V F   
Sbjct: 477 HPKVLEVAAVGVPSEVSGEAVKIFVVKKDP-SLTEEELITHCRRHLTGYKVPKLVEFRDE 535

Query: 121 IPKSPSGKILRKDL 134
           +PKS  GKILR++L
Sbjct: 536 LPKSNVGKILRREL 549

Length = 560

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 98.5 bits (246), Expect = 2e-25
 Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 2/135 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLND     A ++ +G L+TGD+G +D D  +++  R K++I   G  + P  IE  LL 
Sbjct: 220 YLNDAHNAGARLE-DGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLR 278

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK-VHFVH 119
           HP++A A  V + D  AGE+PVA+V    G  +TE  +  ++  ++     + K ++ + 
Sbjct: 279 HPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPERAAVPKAIYIID 338

Query: 120 AIPKSPSGKILRKDL 134
           A+P +  GKI +  L
Sbjct: 339 ALPLTAVGKIFKPRL 353

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 99.1 bits (247), Expect = 2e-25
 Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL   E T A  + +G  +TGDIG +D +  ++++ R  ++I   G  + P EIE +L  
Sbjct: 306 YLYQGELTPAF-EQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQ 364

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I +A VVP+ D   G+VPVA++V  +  ++++  +  Y+ +++  YK       +  
Sbjct: 365 HPGIQEAVVVPKPDAEWGQVPVAYIVSES--DISQAKLIAYLTEKLAKYKVPIAFEKLDE 422

Query: 121 IPKSPSGKILRKDL 134
           +P + SGKILR  L
Sbjct: 423 LPYNASGKILRNQL 436

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 99.3 bits (248), Expect = 3e-25
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N  E T  T  V     TGD  Y D D   +   R  +++K  G  V P E+E  LL 
Sbjct: 370 YWNRREKTRETF-VGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQ 428

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKVHF 117
           HP++ +A VV  +DE     P AFVV  +G+      E  +K+++  ++  YK    + F
Sbjct: 429 HPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEF 488

Query: 118 VHAIPKSPSGKILRKDL 134
           V  +PK+ +GKI R  L
Sbjct: 489 VDELPKTATGKIQRFKL 505

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 99.0 bits (247), Expect = 3e-25
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 1   YLNDPEATAATIDVEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL 58
           YLNDPE TA     +G  +  TGD+G  D D  + I+ R  + +K +G ++ P EIEA+L
Sbjct: 342 YLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVL 401

Query: 59  LSHPSIADATV 69
           L HP +A+A V
Sbjct: 402 LEHPGVAEAAV 412

Length = 412

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 99.3 bits (248), Expect = 4e-25
 Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 5/128 (3%)

Query: 16  GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDE 75
           G   TGD GY D D  +F++ R  ++I   G ++   E+E  +L HP +A+  VV  +DE
Sbjct: 461 GYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDE 520

Query: 76  VAGEVPVAFVVRSNGFELTEEAIKEYIAK----QVVFYKRLHKVHFVHAIPKSPSGKILR 131
           + G+VP+  VV  +  ++  + ++  I      Q+        V FV  +PK+ SGKILR
Sbjct: 521 LKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILR 580

Query: 132 KDLIAKLA 139
           +  + K+A
Sbjct: 581 R-TLRKIA 587

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.2 bits (242), Expect = 2e-24
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 2/135 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+PEATA      G  H+GD+   D +  V++VDR K++I   G  +  AE+E +L S
Sbjct: 385 YWNNPEATAEAFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLAS 443

Query: 61  HPSIADATVVPQKDEVAGEVPVAFV-VRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVH 119
           HP I +  V+ + DE  GEVPVA   VR++   LT E + E++  ++  YK    +  V 
Sbjct: 444 HPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVD 503

Query: 120 AIPKSPSGKILRKDL 134
           A+P++P+GK+L+ +L
Sbjct: 504 ALPRNPAGKVLKTEL 518

Length = 542

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 97.2 bits (242), Expect = 2e-24
 Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 8/140 (5%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+++PE TAATI  +  + TGD G +D D   + V R  ++I   G+++ P E+E+ L+ 
Sbjct: 388 YVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIE 446

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF------ELTEEAIKEYIAKQVVFYKRLHK 114
           HP++ ++ VV   D + GEV  AFVV +  F      +LT+E ++E++      YK   K
Sbjct: 447 HPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKE-LQEHVKSVTAPYKYPRK 505

Query: 115 VHFVHAIPKSPSGKILRKDL 134
           V FV  +PK+ +GKI R +L
Sbjct: 506 VEFVQELPKTITGKIKRNEL 525

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 96.9 bits (241), Expect = 3e-24
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE TA  +D +G LHTGDI  +D    V+IVDR K++I   GF V P EIE ++  
Sbjct: 422 YWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAM 481

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P + +   V   DE +GE+    +V+ +   LT E +K +    +  YK+   + F   
Sbjct: 482 MPGVLEVAAVGVPDEKSGEIVKVVIVKKDP-ALTAEDVKAHARANLTGYKQPRIIEFRKE 540

Query: 121 IPKSPSGKILRKDL 134
           +PK+  GKILR++L
Sbjct: 541 LPKTNVGKILRREL 554

Length = 560

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 96.0 bits (239), Expect = 4e-24
 Identities = 50/143 (34%), Positives = 74/143 (51%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   P+ATA     +G   TGDI   D D   ++VDR K++    G  V PAEIEA+L  
Sbjct: 346 YWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLAD 405

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I +  VV   D   GEV    +V ++G  L  E I+ +++ ++  YK    +  V A
Sbjct: 406 HPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDA 465

Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           +P++ SGK+ +  L   LA+   
Sbjct: 466 LPRTASGKLQKARLRDALAAGRK 488

Length = 488

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 96.1 bits (240), Expect = 4e-24
 Identities = 48/123 (39%), Positives = 76/123 (61%)

Query: 14  VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK 73
           ++GLL +GD+GY D D  +F+  R  ++I   G  V PAE+E LL  HP + +A V+   
Sbjct: 425 IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVD 484

Query: 74  DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKD 133
           DE  G+   AFVV++ G  L E+AIK+Y+   +  YK    V F+  +P++P+GK+L+++
Sbjct: 485 DEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRE 544

Query: 134 LIA 136
           L  
Sbjct: 545 LRE 547

Length = 549

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N P+AT  TI  +G L TGD+  VD D  V+IV R KE+I   G  + P E+E ++  
Sbjct: 357 YWNRPDATEETIQ-DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINK 415

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
              + +  VV ++    GE+P+AF+V+ +   L E+ + E+    +  YK   ++ F+  
Sbjct: 416 LSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKE 475

Query: 121 IPKSPSGKILRKDLIAKLASS 141
           +PK+ +GKI +  L+ +L S 
Sbjct: 476 LPKNATGKIQKAQLVNQLKSR 496

Length = 496

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PE TA     +G LHTGD+   D D   +IVDR K++I   GF V P E+E +L  
Sbjct: 379 YWNRPEETAEAFR-DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAE 437

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI--AKQVVFYKRLHKVHFV 118
           HP++A   V+   DE  GE   A VV   G  +    ++ ++   K  V   +  +V FV
Sbjct: 438 HPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPK--QVDFV 495

Query: 119 HAIPKSPSGKILRKDLIAK 137
            ++P +  GK  +K L A+
Sbjct: 496 DSLPLTALGKPDKKALRAR 514

Length = 524

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 93.9 bits (233), Expect = 3e-23
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PE TAA +  +G LHTGD+GY+D D   ++ DR K++I   GF V P E+E +L  
Sbjct: 417 YWNKPEETAAVLQ-DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYE 475

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           H  + +   +   D   GE   AFVV   G E +EE + ++  K +  YK      F   
Sbjct: 476 HEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDE 535

Query: 121 IPKSPSGKILRKDLI 135
           +PK+  GKILR+ LI
Sbjct: 536 LPKTTVGKILRRVLI 550

Length = 563

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 93.6 bits (233), Expect = 3e-23
 Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 4/134 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  DPE TA     +G  HTGD  ++D D  ++ V R  ++IK  G+++ P E+E+ L+ 
Sbjct: 398 YYRDPERTAEVWH-DGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQ 456

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKE---YIAKQVVFYKRLHKVHF 117
           HP++ +  V    D + G+V  A +V + G+E +EE  KE   ++ K    YK    + F
Sbjct: 457 HPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEF 516

Query: 118 VHAIPKSPSGKILR 131
           V  +PK+ SGKI R
Sbjct: 517 VDELPKTISGKIRR 530

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 93.2 bits (232), Expect = 4e-23
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PE T  T+  +G L TGD    D D       R  ++IK  G  V P E+EA L  
Sbjct: 300 YWNLPEKTQRTL-RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGE 358

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKVHF 117
           HP++A+A VV   DE       AFVV   G    +L E  +  ++ +++  YK   ++ F
Sbjct: 359 HPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEF 418

Query: 118 VHAIPKSPSGKILR 131
           +  +P++ +GK+ R
Sbjct: 419 LDTLPRTATGKLQR 432

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 92.5 bits (230), Expect = 8e-23
 Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PE  A  ID  G + +GD+GY+D D  +F+ DR ++++   G  + PAEIEA+L +
Sbjct: 365 YHNKPEKRAE-IDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHA 423

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P + D  V    D   GE  +A V    G  L E  I+  +  ++  YK    +  +  
Sbjct: 424 VPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAE 483

Query: 121 IPKSPSGKILRKDL 134
           +P+  SGKI ++ L
Sbjct: 484 LPREDSGKIFKRRL 497

Length = 509

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 91.3 bits (227), Expect = 2e-22
 Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 8/149 (5%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL++PE TA  +D EG  ++GD+  +D    + I  R K+II   G  +   E+E +LL 
Sbjct: 395 YLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQ 454

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVV-RSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV- 118
           HP I DA VV   DE  GE   A+VV ++    LT E +  + +++ V  K  +  H V 
Sbjct: 455 HPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRV-AKYKYPEHIVV 513

Query: 119 -HAIPKSPSGKI----LRKDLIAKLASSM 142
              +P++ SGKI    LRKD++ +L   +
Sbjct: 514 IDKLPRTASGKIQKFLLRKDIMRRLTQDV 542

Length = 547

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 90.2 bits (224), Expect = 4e-22
 Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 10/137 (7%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y +DPE TA  I     + TGD+   D D   + + R  ++I   G+++ P ++E+ LL 
Sbjct: 303 YWDDPEKTAELIAGRWYV-TGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLE 361

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK------ 114
           HP++A+A VV   D + GE+  AFVV   G+  ++E  +E    Q+   KRL        
Sbjct: 362 HPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEEL---QLFVKKRLSAHAYPRE 418

Query: 115 VHFVHAIPKSPSGKILR 131
           V FV A+PK+PSGKI R
Sbjct: 419 VEFVPALPKTPSGKIQR 435

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 90.1 bits (223), Expect = 5e-22
 Identities = 43/121 (35%), Positives = 73/121 (60%)

Query: 14  VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK 73
           V+G+  TGD+GY+D+   +FIV R  ++I   G  V P  +E  L +HP++AD  V+   
Sbjct: 394 VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVP 453

Query: 74  DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKD 133
           DE  G    AFVV   G  +    +++Y+  +V  +++   ++ V +IP++P+GK+LRK+
Sbjct: 454 DERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKE 513

Query: 134 L 134
           L
Sbjct: 514 L 514

Length = 516

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 90.0 bits (224), Expect = 5e-22
 Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 9/118 (7%)

Query: 21  GDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80
           GD   VD D   +I+ R  + IK  G +V PAEIE++L SHP++A+A  +   D V GE 
Sbjct: 340 GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEA 399

Query: 81  PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK------VHFVHAIPKSPSGKILRK 132
            V FVV   G   +     E +A  V     L K      VHFV  +PK+ +GKI+R+
Sbjct: 400 IVCFVVLKPGVTPSAALEAE-LADHVG--DALGKPFRPREVHFVSDLPKTRNGKIMRR 454

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 89.9 bits (223), Expect = 7e-22
 Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 1/138 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  DPE TA          +GD+GY+D +  +++ DR K++I   G  +  +E+E ++  
Sbjct: 359 YWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYE 417

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P +A+A V+   D+  GE   A VV + G  LT EA+  +  +++  +K   ++     
Sbjct: 418 LPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDE 477

Query: 121 IPKSPSGKILRKDLIAKL 138
           +P++PSGK+L++ L  +L
Sbjct: 478 LPRNPSGKVLKRVLRDEL 495

Length = 497

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL         ++ +G L+TGD+G +D D   ++  R K++I   G  + PA IE  LL 
Sbjct: 431 YLEAAHNKGLWLE-DGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLR 489

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK-VHFVH 119
           HP++A A  V + D  AGE+PVA+V    G   TE  +  +    +     + K V  + 
Sbjct: 490 HPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILD 549

Query: 120 AIPKSPSGKI----LRKDLIA 136
           A+PK+  GKI    LR+D I 
Sbjct: 550 ALPKTAVGKIFKPALRRDAIR 570

Length = 632

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 88.8 bits (221), Expect = 1e-21
 Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y NDPE TAA  +  G +  GD+GY+D D  +++ DR  ++I   G  + P EIE LL++
Sbjct: 354 YHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVT 413

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHF 117
           HP +AD  V    DE  GE   A V  ++G +  +     +  ++  ++  YK    + F
Sbjct: 414 HPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDF 473

Query: 118 VHAIPKSPSGKILRKDLIAK 137
              +P++P+GK+ ++ L  +
Sbjct: 474 EDELPRTPTGKLYKRRLRDR 493

Length = 502

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL++P+ATA  +  +G   TGD+GY   D +     R+ + ++  GF V PAEIE  L +
Sbjct: 391 YLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEA 450

Query: 61  HPSIADATVVPQKDEVAGE-VPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVH 119
            P +A A VV       G+ VPVAFV+ ++G    E  +     + +  +K   +V  V 
Sbjct: 451 LPGVAAAQVVGA--TRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVE 508

Query: 120 AIPKSPSG---KI----LRKDLIAKLASSMP 143
           A P + S    KI    LR+   A+LA+   
Sbjct: 509 AFPVTESANGAKIQKHRLREMAQARLAAERA 539

Length = 540

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLL 59
           Y  +PEATA  +D +G LHTGDIG +D D  + I DR K++I    G  + P  IE  L 
Sbjct: 296 YYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALK 355

Query: 60  SHPSIADATVVPQKDE 75
           + P I+ A VV     
Sbjct: 356 ASPYISQAVVVGDDRP 371

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 87.5 bits (218), Expect = 3e-21
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 1   YLNDPEATAA-------TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAE 53
           YLN PE TA            E L  TGD+     D  +  + R  + +K +G+++   E
Sbjct: 305 YLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGE 364

Query: 54  IEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH 113
           IEA LL+HP + +A VV ++D    +  VA+VV + G EL    ++ ++A+++  Y    
Sbjct: 365 IEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFLAERLPDYMVPS 424

Query: 114 KVHFVHAIPKSPSGKILRK 132
               + A+P +P+GK+ RK
Sbjct: 425 AFVVLDALPLTPNGKVDRK 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 87.6 bits (218), Expect = 4e-21
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 1   YLNDPEATAA---TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           YLN+PE TA      + +    TGD+ Y++ D  +  + R    IK  G+++   EIEA 
Sbjct: 312 YLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAA 371

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHF 117
           L + P + +A V+P          VAFVV   G   T +A+K+ + K++  Y    +  +
Sbjct: 372 LRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDT-KALKKELKKRLPPYMIPRRFVY 430

Query: 118 VHAIPKSPSGKILRKDL 134
           + ++P + +GKI RK L
Sbjct: 431 LDSLPLNANGKIDRKAL 447

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 87.7 bits (218), Expect = 4e-21
 Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 4/130 (3%)

Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
            G   TGD    D D  ++I  RV ++I   G ++  AEIE+ L+SHP++A+A VV   D
Sbjct: 474 PGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPD 533

Query: 75  EVAGEVPVAFVVRSNGFELTEEAIKE---YIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
           ++ G+   AFV   +G+E  +E  KE   ++ K++    +  K+ FV  +PK+ SGKI+R
Sbjct: 534 DIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMR 593

Query: 132 KDLIAKLASS 141
           + L+ K+A+ 
Sbjct: 594 R-LLRKIAAG 602

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 86.8 bits (216), Expect = 8e-21
 Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 4/123 (3%)

Query: 20  TGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE 79
           TGD    D D   +I+ RV ++I   G ++  AE+E+ L+SHP++A+A VV + DEV GE
Sbjct: 467 TGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGE 526

Query: 80  VPVAFVVRSNGFELTEEAIKE---YIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA 136
              AFV   +G E ++E  KE   ++ K++       ++ FV  +PK+ SGKI+R+ ++ 
Sbjct: 527 AIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRR-ILR 585

Query: 137 KLA 139
           K+A
Sbjct: 586 KIA 588

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 86.0 bits (213), Expect = 1e-20
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+      A  ++ +G +   D+GY D +  ++IV R K +I F G  + P EIE++L  
Sbjct: 347 YIIG-GVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHE 405

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ +  V+   D   GE PVA +  S     T++ +K +  +++  +K   + HFV  
Sbjct: 406 HPAVDEIVVIGVPDSYWGEKPVAIIKGSA----TKQQLKSFCLQRLSSFKIPKEWHFVDE 461

Query: 121 IPKSPSGKILR 131
           IP + SGKI R
Sbjct: 462 IPYTNSGKIAR 472

Length = 487

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL +P+AT       G  HTGD+  +  D  + I DR K+II   G  +   E+E +L  
Sbjct: 402 YLKNPKATEEAFA-GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYR 460

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++  A VV + D   GEVP AFV   +G   TEE I  +  + +  +K    V F   
Sbjct: 461 HPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVFG-E 519

Query: 121 IPKSPSGKI 129
           +PK+ +GKI
Sbjct: 520 LPKTSTGKI 528

Length = 545

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 85.3 bits (211), Expect = 3e-20
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ATA  +  +G   T D+  VD    V I+ RV ++I   G  + P+E+E +L  
Sbjct: 362 YLNQPQATAEKL-QDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGR 420

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEY-IAKQVVFYKRLHKVHFVH 119
            P + +  V+   DE  G+   A VV   G  L+ +A+  +  A ++  +KR  +  F+ 
Sbjct: 421 APGVTEVVVIGLPDERWGQSVTACVVPREGETLSADALDTFCRASELADFKRPRRYFFLD 480

Query: 120 AIPKSPSGKILRKDL 134
            +PK+   K+LR+ L
Sbjct: 481 ELPKNAMNKVLRRQL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 84.5 bits (210), Expect = 5e-20
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 1   YLNDPEATAA------TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
           YLN PE TA           E L  TGD+     D  +  + R+   +K +GF++   EI
Sbjct: 337 YLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEI 396

Query: 55  EALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK 114
           E  LL HP + +A V+ ++D    +  VA+VV      L    ++ ++A+++  Y     
Sbjct: 397 EQALLQHPGVREAAVLVREDAAGDKRLVAYVVARG--ALDAAELRAHLAERLPAYMVPAA 454

Query: 115 VHFVHAIPKSPSGKILRKDL 134
              +  +P + +GK+ R+ L
Sbjct: 455 FVVLDELPLTANGKVDRRAL 474

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 84.8 bits (210), Expect = 5e-20
 Identities = 43/123 (34%), Positives = 71/123 (57%)

Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           +G + +GD+GY+D +  +F+V R  E+I   G  V P E+E  L +HP +A+A V+   D
Sbjct: 415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDD 474

Query: 75  EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
           E  G+   AFVV   G   T E +K+++   +  YK    +  +  +P+  +GKILR++L
Sbjct: 475 EQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRREL 534

Query: 135 IAK 137
            A+
Sbjct: 535 QAR 537

Length = 537

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 84.3 bits (209), Expect = 6e-20
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 1   YLNDPEATAA--------TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPA 52
           YL  PE TA             E L  TGD+     D ++  + R+ + +K +GF++   
Sbjct: 308 YLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELG 367

Query: 53  EIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRL 112
           EIEA L S P +A+A VV   D       VA++V   G  +  E ++  +A ++  Y   
Sbjct: 368 EIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAAIDIEDLRARLATRLPAYMVP 427

Query: 113 HKVHFVHAIPKSPSGKILRKDL 134
            +   + A+P +P+GKI RK L
Sbjct: 428 SRFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL  P+      D +G   TGD+  +D D  + I  R K++I   G  +P  EIEALL  
Sbjct: 406 YLKRPQLNG--TDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYR 463

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVV---FY-KRLHKVH 116
           HP+IA   +V   DE  GE   AFVV   G  L  E + E++  Q V   +  +RL    
Sbjct: 464 HPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERL---V 520

Query: 117 FVHAIPKSPSGKI 129
              A+P++PSGKI
Sbjct: 521 VRDALPRTPSGKI 533

Length = 547

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 82.1 bits (203), Expect = 4e-19
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE  A   D +G   +GD+   D D  + +  RVK+ I   G ++   E+E LLL 
Sbjct: 399 YYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLR 458

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVH 119
           HP++ DA +V   DE+ GE   AF+V      L    ++ ++ ++ +  +K   ++ FV 
Sbjct: 459 HPAVHDAALVAMPDELLGEKSCAFIV-VKEPPLRAAQLRRFLRERGLAAFKLPDRIEFVD 517

Query: 120 AIPKSPSGKILRKDLIAKLASSMP 143
           ++P +  GKI +K L  +LAS + 
Sbjct: 518 SLPLTAVGKIDKKALRRRLASRLL 541

Length = 542

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 81.2 bits (200), Expect = 8e-19
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PE +A    V     TGDIGY+D D   F+VDR K++I   GF V P  IE  +  
Sbjct: 407 YWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYE 465

Query: 61  HPSIADATVVPQKDEVAGEVPVAFV-VRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVH 119
           HP + +  V+   D+  GE   AFV +R      + + ++ ++A ++  ++    V FV 
Sbjct: 466 HPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVD 525

Query: 120 AIPKSPSGKILRKDL 134
            +P++P GK+ R +L
Sbjct: 526 ELPRTPVGKLSRHEL 540

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 8/125 (6%)

Query: 20  TGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE 79
           T D G  D D   FI+ R  ++I   G ++   EIE  + SHP++A+  VV  KD + G+
Sbjct: 477 TFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536

Query: 80  VPVAFVVRSNGFELT--------EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
           V VAFVV  +   L         E+ I   +  Q+    R  +V FV A+PK+ SGK+LR
Sbjct: 537 VAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLR 596

Query: 132 KDLIA 136
           + + A
Sbjct: 597 RAIQA 601

Length = 629

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 18  LHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA 77
           + T D+GY      +  + R+ ++I   G  V P E+E ++L  P + +A V   KD VA
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA 352

Query: 78  GE-VPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
           GE V    +      E+    ++E+  + +  Y+  H++  V  IPK+ +GK+ RK L
Sbjct: 353 GERVKAKVISHE---EIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL 407

Length = 414

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 1   YLNDPEATAATIDVEGLLHT-GDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL 59
           YLNDP  TA     +G   T GDIGYVD D  +++ DR   +I   G  + P E E LL+
Sbjct: 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI 425

Query: 60  SHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIA---KQVVFYKRLHKVH 116
           +HP +ADA V    +E  GE   A V   +G +       E IA   +++   K    + 
Sbjct: 426 THPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSID 485

Query: 117 FVHAIPKSPSGKILRKDLIAK 137
           F   +P+ P+GK+ ++ L  +
Sbjct: 486 FEDELPRLPTGKLYKRLLRDR 506

Length = 511

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 80.3 bits (199), Expect = 2e-18
 Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE TA     +G   TGD+G +D    V IV R K++I   G+ V P E+E  +  
Sbjct: 362 YWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDE 421

Query: 61  HPSIADATV--VPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV 118
            P + ++ V  VP  D   GE   A VV   G  L E AI   +  ++  +K+  +V FV
Sbjct: 422 LPGVVESAVIGVPHPD--FGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFV 479

Query: 119 HAIPKSPSGK----ILR---KDLIA 136
             +P++  GK    +LR    DL A
Sbjct: 480 DELPRNTMGKVQKNLLREQYADLFA 504

Length = 504

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 79.0 bits (196), Expect = 4e-18
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 5/123 (4%)

Query: 20  TGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE 79
           TGD    D D   +I  RV +++   G ++  AEIE+ L++HP +A+A VV + D++ G+
Sbjct: 487 TGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQ 546

Query: 80  VPVAFVVRSNGFELTEEAIKE---YIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL-- 134
              AFV    G E ++E  KE   ++ K++    +   + F   +PK+ SGKI+R+ L  
Sbjct: 547 GIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRK 606

Query: 135 IAK 137
           IA+
Sbjct: 607 IAE 609

Length = 637

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 79.2 bits (195), Expect = 5e-18
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 3/130 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL  P   +   D EG   TGD+ + D +  + I  R K++I   G  +P  EIE LL  
Sbjct: 404 YLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQ 461

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRL-HKVHFVH 119
           HP++A   +V   DE  GE   A VV   G  L   A+  ++  Q V  + +  ++  V 
Sbjct: 462 HPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVD 521

Query: 120 AIPKSPSGKI 129
           A+P +P+GKI
Sbjct: 522 ALPATPAGKI 531

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLL 59
           Y  +PEATA     +G   TGD+G +D D  + I  R KE+IK   G  + P  IE+ L 
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 60  SHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ 105
             P I    VV        +  VA +V         +A++++    
Sbjct: 494 KSPLIEQICVVGDDK----KFLVALIVPD------FDALEKWAESL 529

Length = 613

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 77.6 bits (192), Expect = 1e-17
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 1   YLNDPEATAATI-----DVEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAE 53
           YL  PE TA        D  G  L  TGD+     D  +  + R  + +K +GF++   E
Sbjct: 298 YLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGE 357

Query: 54  IEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH 113
           IEA L +HP +ADA VV +++    +  VA+VV   G     EA++  +   +  Y    
Sbjct: 358 IEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEALRAALRATLPAYMVPA 417

Query: 114 KVHFVHAIPKSPSGKILRKDL 134
               +  +P +P+GK+ RK L
Sbjct: 418 AFVQLDELPLTPNGKVDRKAL 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 77.6 bits (192), Expect = 1e-17
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 1   YLNDPEATAAT--IDVEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEA 56
           Y  DPE TA        G  L  TGD+G    D  +  + R    +K +G++V   EIEA
Sbjct: 340 YWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEA 399

Query: 57  LLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVH 116
            L  HP +  A VV   D    +   AFVV  +G  +    ++  +A+ +  Y    +  
Sbjct: 400 ALARHPGVQRAVVVVVGDG-GAKALAAFVVAEDGAAVDAAVLRAALAELLPAYMVPSRFV 458

Query: 117 FVHAIPKSPSGKILRKDL 134
            + A+P + +GK+ RK L
Sbjct: 459 VLDALPLTANGKVDRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 21/128 (16%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIK-FKGFQVPPAEIEALLL 59
           Y  DPE TA     +G LHTGD G +D D  + I  RVKE+ K  KG  V PA IE LL 
Sbjct: 356 YYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLS 415

Query: 60  SHPSIADATVV----PQKDEVAGEVPVAFVVRSNGF-----ELTEEAIKEYIAK---QVV 107
           ++P +    VV    PQ        PVA VV S        E  EE++++ +AK   ++ 
Sbjct: 416 ANPHVEQVCVVGSGLPQ--------PVALVVLSEAADPLEREEVEESLQQTLAKVNSELE 467

Query: 108 FYKRLHKV 115
            ++RL  +
Sbjct: 468 SHERLSAL 475

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 76.8 bits (189), Expect = 3e-17
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL+D        D  G   TGDI   D D     V R  ++I   G+ +   E+E  LL+
Sbjct: 352 YLDDERQQEYVRD--GWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLT 409

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKVHF 117
           HP +A+  V+   DE  G++  A +V  +G    EL  E +++++   +  YK   +++F
Sbjct: 410 HPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINF 469

Query: 118 VHAIPKSPSGKILR 131
           V A+PK+ +GKI R
Sbjct: 470 VDALPKTQTGKIQR 483

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 1   YLNDPEAT-AATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL 59
           Y   PE T  A  ++    HTGD    D D     VDR+K+ I+ +G  +   E+E +LL
Sbjct: 386 YFGMPEKTVEAWRNL--WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLL 443

Query: 60  SHPSIADATVVPQKDEVAG-EVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV 118
           SHP++A A V P   E+   EV  A V+R +G  L   A+  +   ++ ++     V FV
Sbjct: 444 SHPAVAAAAVFPVPSELGEDEVMAAVVLR-DGTALEPVALVRHCEPRLAYFAVPRYVEFV 502

Query: 119 HAIPKSPSGKI 129
            A+PK+ +GK+
Sbjct: 503 AALPKTENGKV 513

Length = 542

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query: 1   YLNDPEATAAT------IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
           Y N PEATA T       D  G L TGD+G++ HD E+++  R+K++I  +G    P +I
Sbjct: 396 YWNRPEATAETFGARLATDEGGWLRTGDLGFL-HDGELYVTGRLKDLIIIRGRNHYPQDI 454

Query: 55  EALLLSHPSI-----ADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVV-- 107
           EA +           A A  V    E    + V   VR  G      A+ E I   V   
Sbjct: 455 EATVERAHPALRPGAAAAFSVDGDGE--ERLVVVAEVRRRGLPADLAALAEAIRAAVARE 512

Query: 108 FYKRLHKVHFV--HAIPKSPSGKILR 131
                  V  V    +PK+ SGKI R
Sbjct: 513 HGVAPADVVLVRPGTLPKTSSGKIQR 538

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 76.6 bits (188), Expect = 3e-17
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 13/149 (8%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL +P+AT+      G L+TGD+G +  D  V I DR K+II   G  +   E+E +L  
Sbjct: 406 YLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYK 464

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ--VVFYKRLH----- 113
           +P + +  VV       GE P AFVV   G    E+ + + + ++  ++ Y R +     
Sbjct: 465 YPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFM 524

Query: 114 ---KVHFVHAIPKSPSGKILRKDL--IAK 137
              KV F+  +PK+ +GKIL+  L  IAK
Sbjct: 525 CPRKVVFLQELPKNGNGKILKPKLRDIAK 553

Length = 579

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 76.5 bits (189), Expect = 4e-17
 Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 12/143 (8%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
             N+PE   +         +GD  Y+D D   +   RV ++IK  G +V P E+E+ L+ 
Sbjct: 418 IWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLME 476

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVH---- 116
           HP++A+A V+ + D V GE+  AFV    G+E +EE  +E       F K+    H    
Sbjct: 477 HPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRG----FVKKGLGAHAAPR 532

Query: 117 ---FVHAIPKSPSGKILRKDLIA 136
              F   +PK+ SGKI+R+ L A
Sbjct: 533 EIEFKDKLPKTRSGKIMRRVLKA 555

Length = 570

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 75.9 bits (186), Expect = 5e-17
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  + EAT + +  +G   TGDI   D +  V I DR+K++IK  G  +   ++E  L+ 
Sbjct: 374 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 433

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK-VHFVH 119
           HP + +A VV        E P+A VV     + T E + E++ K      +L     F  
Sbjct: 434 HPKVKEAAVVAIPHPKWQERPLAVVVPRGE-KPTPEELNEHLLKAGFAKWQLPDAYVFAE 492

Query: 120 AIPKSPSGKILRKDLIAK 137
            IP++ +GK   K  + +
Sbjct: 493 EIPRTSAGKF-LKRALRE 509

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 1   YLNDPEATAAT---IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           Y  DPE TA T   ID       GD   V+ D  + ++ R    I   G +V P E+E  
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEA 449

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHF 117
           L +HP +ADA VV   DE  G+  VA V    G       ++ +    +  YK    + F
Sbjct: 450 LKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWF 509

Query: 118 VHAIPKSPSGK 128
           V  + +SP+GK
Sbjct: 510 VDEVQRSPAGK 520

Length = 533

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 44/134 (32%), Positives = 70/134 (52%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE  AA  D EG  +TGD+  +  +  + +V R K+ I   G ++   EIE LLL+
Sbjct: 392 YYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLA 451

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ DA +V   DE+ GE   AF+V  +      +  +    + +  YK   +V FV +
Sbjct: 452 HPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPDRVEFVDS 511

Query: 121 IPKSPSGKILRKDL 134
           +P +  GK+ +K L
Sbjct: 512 LPLTAVGKVDKKAL 525

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 3/131 (2%)

Query: 1   YLNDPEATAAT---IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           Y  DPE TA T   ID       GD   V+ D  + ++ R    I   G +V P E+E  
Sbjct: 228 YYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEA 287

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHF 117
           L +HP +ADA VV   DE  G+  VA V    G  L    ++++  + +  YK    +  
Sbjct: 288 LKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAGYKLPRAIVV 347

Query: 118 VHAIPKSPSGK 128
           V  +P++PSGK
Sbjct: 348 VDTVPRAPSGK 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 74.6 bits (183), Expect = 2e-16
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
             L  + D G  D D   FI+ R  ++I   G ++   EIE  + SHPS+A+  VV   D
Sbjct: 471 RPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHD 530

Query: 75  EVAGEVPVAFVVRSNGFEL--------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPS 126
           E+ G+V V F +                E  + + + +Q+    R  +V+FV A+PK+ S
Sbjct: 531 ELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRS 590

Query: 127 GKILRKDLIA 136
           GK+LR+ + A
Sbjct: 591 GKLLRRSIQA 600

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 25/151 (16%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL +P+A        G  H+GD+G    D  + I DR K+II   G  +   E+E ++ +
Sbjct: 416 YLKNPKANEEAFA-NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYT 474

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKE--------------YIAKQV 106
           HP++ +A+VV + DE  GE P AFV    G + ++EA                 ++ K V
Sbjct: 475 HPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSV 534

Query: 107 VFYKRLHKVHFVHAIPKSPSGKILRKDLIAK 137
           VF            +PK+ +GKI +  L AK
Sbjct: 535 VF----------GPLPKTATGKIQKHVLRAK 555

Length = 567

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFI-VDRVKEIIKFKGFQVPPAEIEALLL 59
           Y N+   T  T        +GD  YV +DD  +    R  +++K  G  V P EIE+ L+
Sbjct: 370 YWNNRAKTRDTF-QGEWTRSGD-KYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALI 427

Query: 60  SHPSIADATVVPQKDEVAGEVPVAFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKVH 116
            HP++ +A VV  +DE     P AF+V   G       E  +KE++  ++  YK    + 
Sbjct: 428 QHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIV 487

Query: 117 FVHAIPKSPSGKILR 131
           FV  +PK+ +GKI R
Sbjct: 488 FVDDLPKTATGKIQR 502

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 1   YLNDPEATAA-------TIDVEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPP 51
           YLN PE TA         ++  G  +  TGD+     D  +  + R  + +K +G ++  
Sbjct: 299 YLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIEL 358

Query: 52  AEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVV-----RSNGFELTEEAIKEYIAKQV 106
            EIEA+L + P +  A VV   D+  G+  VAF+           ++    ++  + +++
Sbjct: 359 GEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRERL 418

Query: 107 VFYKRLHKVHFVHAIPKSPSGKILRKDL 134
             Y        +  +P + SGK+ RK L
Sbjct: 419 PSYMVPSVYVPLDELPLTASGKVDRKAL 446

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 1   YLNDPEATAATIDVEGLLHT--GDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL 58
           YLNDPE TAA         T  GD+G VD D  +++ DR   +I   G  + P E E  L
Sbjct: 362 YLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENAL 421

Query: 59  LSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKE---YIAKQVVFYKRLHKV 115
             HP++ D  V+   D   GE   A +    G   ++E  +E   Y   ++  YK    V
Sbjct: 422 TMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSV 481

Query: 116 HFVHAIPKSPSGKILRKDL 134
            FV  +P++P+GK+++  L
Sbjct: 482 EFVDELPRTPTGKLVKGLL 500

Length = 501

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 72.6 bits (178), Expect = 9e-16
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 16  GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDE 75
           G   +GD    D D   ++  RV ++I   G ++  AE+E+ L+SHP  A+A VV  + E
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572

Query: 76  VAGEVPVAFVVRSNGFELTEEAIKEYIA---KQVVFYKRLHKVHFVHAIPKSPSGKILRK 132
           V G+   AFV    G   +EE  K  I     Q+  +    K+H+   +PK+ SGKI+R+
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRR 632

Query: 133 DLIAKLAS 140
            ++ K+AS
Sbjct: 633 -ILRKIAS 639

Length = 666

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 7/145 (4%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   P+  A+  D  G   +GD+  +D D  + +V R K+ I   G ++   EIE LLL 
Sbjct: 394 YYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLR 453

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVH 119
           HP++  A +V  +DE+ GE   AF+V      L    ++ ++ +Q +  +K   +V  V 
Sbjct: 454 HPAVIHAALVSMEDELMGEKSCAFLVVKE--PLKAVQLRRFLREQGIAEFKLPDRVECVD 511

Query: 120 AIPKSPSGKI----LRKDLIAKLAS 140
           ++P +  GK+    LR+ L ++ ++
Sbjct: 512 SLPLTAVGKVDKKQLRQWLASRASA 536

Length = 536

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 1   YLNDPEATAA----TIDVEGLLH-------TGDIGYVDHDDEVFIVDRVKEIIKFKGFQV 49
           Y NDPE TA          G LH       +GD    D +  ++ V R  E+IK  G++V
Sbjct: 370 YWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRV 429

Query: 50  PPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFY 109
            P E+E +  +   +A+A      D   G+  V  V    G EL   A+      ++  Y
Sbjct: 430 SPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNY 489

Query: 110 KRLHKVHFVHAIPKSPSGKILRKDL 134
                +H   A+P++ +GKI RK L
Sbjct: 490 MVPALIHVRQALPRNANGKIDRKAL 514

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 12  IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVP 71
           +D +G+  T D+GY+D    + I+ R  + I   G  V PAE+EA +L+   + D  V+ 
Sbjct: 320 LDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLG 379

Query: 72  QKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
             D   GEV  A  V  +   ++ E +K  I  Q+  +K+      V  +P++P GKI R
Sbjct: 380 LPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINR 438

Query: 132 KDL 134
           + L
Sbjct: 439 QQL 441

Length = 452

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y NDPEA A  +   G+  +GD+ Y D D   +   R+ + ++  G  +  A IE +LL 
Sbjct: 367 YYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLR 425

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIA-------KQVVFYKRLH 113
           +P   +  V    D V G+  +A +V + G +   +A  E++A       KQ   Y R+ 
Sbjct: 426 YPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRV- 484

Query: 114 KVHFVHAIPKSPSGKILRKDLIA 136
                  +P++ + K+L++ L A
Sbjct: 485 ----CAELPRTATFKVLKRQLSA 503

Length = 529

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 67.5 bits (165), Expect = 5e-14
 Identities = 39/123 (31%), Positives = 62/123 (50%)

Query: 12  IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVP 71
           +D +G   TGD+  +D    + I DR K++IK  G  +   ++E L + HP +A+A V+ 
Sbjct: 406 LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIG 465

Query: 72  QKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
                  E P+  V    G   T E I +Y+  ++  +     V FV AIP + +GKIL+
Sbjct: 466 VYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILK 525

Query: 132 KDL 134
             L
Sbjct: 526 TAL 528

Length = 542

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 66.5 bits (162), Expect = 1e-13
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 1    YLNDPEATAATI------DVEGLLH-TGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAE 53
            YLN P  TA              L+ TGD+     D  V  + R+   +K +GF++   E
Sbjct: 2359 YLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGE 2418

Query: 54   IEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH 113
            IEA L +HP++ +A VV Q D  +G+  VA+VV  +  E     ++ ++A ++  Y    
Sbjct: 2419 IEARLQAHPAVREAVVVAQ-DGASGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPA 2477

Query: 114  KVHFVHAIPKSPSGKILRKDLIAKLAS 140
                +  +P +P+GK+ RK L     S
Sbjct: 2478 HWVVLERLPLNPNGKLDRKALPKPDVS 2504

Length = 5163

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 38/121 (31%), Positives = 64/121 (52%)

Query: 14  VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK 73
           V+G   TGD+  +D D  + I DR K++IK  G  +   +IE + ++HP++A+A  +   
Sbjct: 407 VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACA 466

Query: 74  DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKD 133
                E P+  VV+  G E+T E +  +   +V  +     V FV AIP + +GK+ +  
Sbjct: 467 HPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLK 526

Query: 134 L 134
           L
Sbjct: 527 L 527

Length = 539

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y      TA+ +  +G L TGDIG++D    ++++ R  + IK  G  V P E+EA+L  
Sbjct: 399 YWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQ 458

Query: 61  HPSIADATVVPQKDEVAGEVPVAFV--------------VRSNGFELTEEAIKEYIAKQV 106
           HP +A   VV   D    E+ VA V                     L+ E ++ +  ++ 
Sbjct: 459 HPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKN 518

Query: 107 VFYKRLHKVHFV--HAIPKSPSGKILRKDLI 135
           +   ++ K+        P + +GKI R+D +
Sbjct: 519 LSRFKIPKLFVQWRKPFPLTTTGKI-RRDEV 548

Length = 563

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 64.9 bits (158), Expect = 4e-13
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YL DP  TAA    +G L TGD+G +    ++ I  R+KE+I   G ++ P  +E +L S
Sbjct: 394 YLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLAS 452

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ +A V    D++ GE   A +V       T E + ++  +++  ++          
Sbjct: 453 HPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASG 512

Query: 121 IPKSPSGKILRK 132
           +P +  G + R+
Sbjct: 513 LPHTAKGSLDRR 524

Length = 534

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 64.5 bits (158), Expect = 5e-13
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLL 59
           Y  +PE TA   D +G  HTGDIG    D  + I+DR K + K  +G  V   ++E +  
Sbjct: 364 YYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYK 423

Query: 60  SHPSIADATV--VPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ 105
           S P +    V     K        VA VV        E+ ++++ A+ 
Sbjct: 424 SSPLVDQICVYGDSLKS-----FLVAIVV------PDEDVLEKWAAEN 460

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+PEATA  +   G+  +GD+ Y D D  ++   R  + ++  G  +  A IE +LL 
Sbjct: 366 YYNNPEATAERMR-HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLR 424

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ----VVFYKRLHKVH 116
           HP+I    V    DE  G+  +A +V  +G     +A   ++A Q       + R   V 
Sbjct: 425 HPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRY--VR 482

Query: 117 FVHAIPKSPSGKILRKDLIA 136
               +P + + K+L+++LIA
Sbjct: 483 IAADLPSTATNKVLKRELIA 502

Length = 540

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQ-VPPAEIEALLL 59
           YLN  E T   ID +G LH+GD+G++D D  ++I  R+KE+I   G + VPP  IE  + 
Sbjct: 404 YLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAVK 463

Query: 60  SH-PSIADATVVPQK 73
              P I++A +V  K
Sbjct: 464 KELPIISNAMLVGDK 478

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 10/145 (6%)

Query: 1   YLNDPEATAA---TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           YLN+PE TA    T D +   HTGD GY++ D  +F   R+   IK  G+++   EIE  
Sbjct: 358 YLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-DGLLFYQGRIDFQIKLNGYRIELEEIEQN 416

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNG-----FELTEEAIKEYIAKQVVFYKRL 112
           L     +  A VVP   +   +  +A+VV         FELT +AIK+ + ++++ Y   
Sbjct: 417 LRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELT-KAIKKELKERLMEYMIP 475

Query: 113 HKVHFVHAIPKSPSGKILRKDLIAK 137
            K  +  ++P +P+GKI RK LI +
Sbjct: 476 RKFIYRDSLPLTPNGKIDRKALIEE 500

Length = 503

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  +PEA A     +G   TGD+G++ HD  + I  R K++I   G      EIEA +  
Sbjct: 414 YYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTITGREKDMIIINGVNYYNHEIEAAVEQ 472

Query: 61  ----HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVH 116
                PS   A  V        E+ V FV R +  +     ++  I   V     +   +
Sbjct: 473 VPGVEPSFTAACAVRDAGSGTDELAVFFVPRYDLDDRLAALLRA-IRTHVARKIGIAPAY 531

Query: 117 FV----HAIPKSPSGKILRKDLIAKL 138
            +       PK+  GKI R  L  + 
Sbjct: 532 VIPLAKEDFPKTSLGKIQRAQLRKRF 557

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 1   YLNDPEATA--------ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPA 52
           YLN PE TA        A  D   L  TGD+     D  +  + R+ + +K +G+++   
Sbjct: 333 YLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELG 392

Query: 53  EIEALLLSHPSIADATV 69
           EIEA LL HP + +A V
Sbjct: 393 EIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 19/142 (13%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+PEAT  +I  +G L TGD+G++  +  + I  R K+II   G    P +IE +   
Sbjct: 354 YYNNPEATKKSITPDGWLKTGDLGFL-RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQ 412

Query: 61  HPSIADATVV--------PQKDEVAGEVPVAFV---VRSNGFELTEEAIKEYIAKQVVFY 109
              I    V          Q +EV     V FV      + F      IK ++ K++   
Sbjct: 413 VEGIKLGRVAACGVYDEKEQSEEV-----VIFVEYRQSLDDFTPLALKIKRHVNKKMGL- 466

Query: 110 KRLHKVHFVHAIPKSPSGKILR 131
             +  V  V +IPK+ SGKI R
Sbjct: 467 -NIDHVIPVRSIPKTTSGKIQR 487

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 18/141 (12%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  D E +   +  +G L TGD+GY+  D  ++I  R K++I   G  + P +IE +   
Sbjct: 425 YFRDEE-SQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQ 482

Query: 61  HPSI----ADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVH 116
            P +    A A  + Q++   GE  V  V      E     +   +A  V   +    V 
Sbjct: 483 EPELRSGDAAAFSIAQEN---GEKIVLLVQCRISDEERRGQLIHALAALV---RSEFGVE 536

Query: 117 FV------HAIPKSPSGKILR 131
                   H++P++ SGK+ R
Sbjct: 537 AAVELVPPHSLPRTSSGKLSR 557

Length = 579

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 1    YLNDPEATAATI-------DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAE 53
            YL  P  TA          D   L  TGD    + D  +  + R+ + +K +GF+V P E
Sbjct: 1483 YLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEE 1542

Query: 54   IEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH 113
            I+A LL+ P +A A V+ ++   AG   V +     G E   E +K  +A ++  Y    
Sbjct: 1543 IQARLLAQPGVAQAAVLVREG-AAGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPA 1601

Query: 114  KVHFVHAIPKSPSGKILRKDL 134
            ++  +  +P  PSGK+ R+ L
Sbjct: 1602 QLIRLDQMPLGPSGKLDRRAL 1622

Length = 4334

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 1   YLNDPEATA-ATIDVEGL--LHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           YLN+PE TA A    EG     TGD G +  D ++F   R+   IK  G+++   +IE  
Sbjct: 356 YLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-DGQLFYQGRLDFQIKLHGYRIELEDIEFN 414

Query: 58  LLSHPSIADATVVP--QKDEVAGEVPVAFVVRSNGFE---LTEEAIKEYIAKQVVFYKRL 112
           L     I  A VVP   KD     +  A V  +  FE      +AIK+ + K +  Y   
Sbjct: 415 LRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIP 474

Query: 113 HKVHFVHAIPKSPSGKILRKDLIAK 137
            K  +   +P + +GKI RK L  +
Sbjct: 475 RKFIYRDQLPLTANGKIDRKALAEE 499

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 16  GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDE 75
           G  ++GD+G+ D +    IV R  + IK  G +V    IE  +L HP + +   +   D 
Sbjct: 492 GYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDP 551

Query: 76  VAGEVPVAFVVRSNGFE--------LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSG 127
               VP+  +V              L  E I   I + +     L K+  V+ +PK+ +G
Sbjct: 552 DCYNVPIGLLVLKQDQSNQSIDLNKLKNE-INNIITQDIESLAVLRKIIIVNQLPKTKTG 610

Query: 128 KILR 131
           KI R
Sbjct: 611 KIPR 614

Length = 647

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 58.3 bits (141), Expect = 8e-11
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 14  VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK 73
            +G L TGD+G V  D  + I DR +++I+  G  +  A++E  +++ P + +  V+   
Sbjct: 428 ADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYP 487

Query: 74  DEVAGEVPVAFVVRSNGFELTEEA---IKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKIL 130
           D+  GE P+A  V + G E T E    +++ +  ++  +       FV  I K+  GK  
Sbjct: 488 DDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFD 547

Query: 131 RKDLIAKLA 139
           +KDL   LA
Sbjct: 548 KKDLRQHLA 556

Length = 576

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 1    YLNDPEATAAT------IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
            Y   P  TA        +  E +  TGD+     D  +    R+   +K +G ++   EI
Sbjct: 865  YHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEI 924

Query: 55   EALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK 114
            EA LL HP + +A V+       G+  V +VV  +      EA+K ++A  +  Y    +
Sbjct: 925  EARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQ 980

Query: 115  VHFVHAIPKSPSGKILRKDLIAKLAS 140
               +  +P +P+GK+ RK L A  AS
Sbjct: 981  WLALERLPLTPNGKLDRKALPAPEAS 1006

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 15   EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
              L  TGD+     D  +  + R+   +K +GF++   EIEA LL HPS+ +A V+ + D
Sbjct: 3470 GRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR-D 3528

Query: 75   EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
               G+  VA+VV ++      E +++++A  +  Y    ++  + A+P  P+GK+ RK L
Sbjct: 3529 GAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKAL 3588

Length = 3956

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 14/136 (10%)

Query: 1   YLNDPEATAA-TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL- 58
           YLN+ E T+   +  +G   TGDIG +D D  + IV R+K   K  G  V    +E LL 
Sbjct: 352 YLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLS 411

Query: 59  --LSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK-- 114
             L   S+  A  VP  DE  GE  V      +   L  E +   + +  +    L    
Sbjct: 412 EILPEDSLHAAVEVP--DEKKGEKIVLLTTTED---LDPEELNAILREAGL--PNLAVPR 464

Query: 115 -VHFVHAIPKSPSGKI 129
            +  V  IP   SGK 
Sbjct: 465 KILHVDEIPLLGSGKT 480

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.1 bits (135), Expect = 6e-10
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 10/146 (6%)

Query: 1    YLNDPEATAATI------DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
            Y N P  TA           E L  TGD+     D  +  + RV   +K +GF++   EI
Sbjct: 3403 YHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEI 3462

Query: 55   EALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK 114
            EA LL HP + +A V+     V G   VA+VV  +      EA+K ++   +  Y     
Sbjct: 3463 EARLLEHPWVREAVVL----AVDGRQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAH 3518

Query: 115  VHFVHAIPKSPSGKILRKDLIAKLAS 140
            + F+  +P +P+GK+ RK L    A+
Sbjct: 3519 LLFLERMPLTPNGKLDRKALPRPDAA 3544

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.6 bits (134), Expect = 7e-10
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 1    YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
            ++ DP           L  TGD+     D  +  + R+   +K +GF++   EIEA LL+
Sbjct: 879  FVPDPFGADG----GRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLA 934

Query: 61   HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRL---HKV-- 115
             P + +A V+ Q    AG   VA++V +   +  E        K  +  +++   + V  
Sbjct: 935  QPGVREAVVLAQ-PGDAGLQLVAYLVPAAVADGAEHQATRDELKAQL--RQVLPDYMVPA 991

Query: 116  HFV--HAIPKSPSGKILRKDL 134
            H +   ++P +P+GK+ RK L
Sbjct: 992  HLLLLDSLPLTPNGKLDRKAL 1012

Length = 3956

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
            G   T D+G +D D  + ++ R  + I   G  V P  +EA L +HP++AD  V    D
Sbjct: 233 PGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPD 291

Query: 75  EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
           +  G+  VA VV   G   T EA++ ++A+ +       ++H V  +P+   GK+ R+ L
Sbjct: 292 DRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRAL 351

Query: 135 IAKLASS 141
           + + A  
Sbjct: 352 VRRFAGE 358

Length = 358

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 4   DPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPS 63
             +      D +G L TGD+GY+  + EV +  RVK++I   G  + P +IE        
Sbjct: 402 TMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEG 461

Query: 64  I--ADATVVPQKDEVAGEVPVAFVVRSNGFELTEE--AIKEYIAKQVV--FYKRLHKVHF 117
           +   +A  V      + E   A  V SN FE   E   I+  +A +VV     R   V  
Sbjct: 462 VRPGNAVAVRLDAGHSRE-GFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVV 520

Query: 118 VHA--IPKSPSGKILR 131
           +    IPK+PSGK+ R
Sbjct: 521 LGPGSIPKTPSGKLRR 536

Length = 545

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 20/159 (12%)

Query: 1    YLNDPEATA--------ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPA 52
            YLN P  TA         T+    L  TGD+     D  +  + R+   +K +GF++   
Sbjct: 1932 YLNRPALTAERFVADPFGTVG-SRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELG 1990

Query: 53   EIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEA---------IKEYIA 103
            EIEA L     + +A V+ Q D   G+  VA+VV      L ++          +K ++ 
Sbjct: 1991 EIEARLREQGGVREAVVIAQ-DGANGKQLVAYVV-PTDPGLVDDDEAQVALRAILKNHLK 2048

Query: 104  KQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM 142
              +  Y     + F+  +P +P+GK+ RK L A  AS +
Sbjct: 2049 ASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDASEL 2087

Length = 3956

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 45/140 (32%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 1    YLNDPEATA---ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
            YL DPE TA     ID  G   TGD G++D D  + I DR     K  G  VP   +E  
Sbjct: 1001 YLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEE 1060

Query: 58   LL-----SHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRL 112
            L           A  T VP  DE  GE  V             E +K  I +       L
Sbjct: 1061 LAKALGGEEVVFA-VTAVP--DEKKGEKLVVLHTCG---AEDVEELKRAIKES--GLPNL 1112

Query: 113  HKVHF---VHAIPKSPSGKI 129
             K      V A+P   SGK+
Sbjct: 1113 WKPSRYFKVEALPLLGSGKL 1132

Length = 1146

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 16/148 (10%)

Query: 1   YLNDPEATAAT------IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
           YL  P+ TA+          E +  TGD+     D  V  + R  + +K +G ++   EI
Sbjct: 816 YLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEI 875

Query: 55  EALLLSHPSIADATVVP----QKDEVAGEVP--VAFVVRSNGFELTEEAIKEYIAKQVVF 108
           +  + + P +  A        Q     G+    V ++V  +G  L   A++  + +++  
Sbjct: 876 DRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPP 935

Query: 109 YKRLHKVHFVH--AIPKSPSGKILRKDL 134
           +  +  V  +    +P S +GK+ RK L
Sbjct: 936 H--MVPVVLLQLDQLPLSANGKLDRKAL 961

Length = 1296

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 1   YLNDPEATAATI-DV----EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIE 55
           Y +D       + DV    +   +TGD+   D     + VDR+ +  ++KG  V   E+E
Sbjct: 298 YTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVE 357

Query: 56  ALLLSHPSIADATV----VPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKR 111
            +L  HP + +A V    VP  +  AG    A  +         +A   ++ +Q+  Y R
Sbjct: 358 EVLAKHPGVEEANVYGVEVPGTEGRAGM--AALTLAPGA-AFDPQAFAAHLDEQLPAYAR 414

Query: 112 LHKVHFVHAIPKSPSGKILRKDL 134
              +    A+  + + K  + DL
Sbjct: 415 PLFLRVQAAMETTGTFKYQKTDL 437

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 1    YLNDPEATAATI-------DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAE 53
            Y+ DP  TA            E L  TGD+     D  +  V R+   +K +G+++   E
Sbjct: 4080 YVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGE 4139

Query: 54   IEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYK 110
            IEA L     + +A V  Q + V G+  V ++V            E IK+ +  ++  Y 
Sbjct: 4140 IEARLHEQAEVREAAVAVQ-EGVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYM 4198

Query: 111  -RLHKVHFVHAIPKSPSGKILRKDLIA 136
              LH +     +P + +GK+ RK L A
Sbjct: 4199 VPLHWLWL-DRLPLNANGKLDRKALPA 4224

Length = 4334

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 11/143 (7%)

Query: 1   YLNDPEAT--AATIDVEGLLH-TGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           Y N PEAT  A   D   + H  GD+GY D    ++   R    ++  G  +    +E +
Sbjct: 312 YYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQV 371

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI----AKQVVFYKRLH 113
              HP +  + +V    +   + PV  VV      L      E      AKQ      + 
Sbjct: 372 FNRHPGVRRSALVGV-GKPGTQAPVL-VVEPMPPVLDRRKRLEGRLRATAKQAPATVEIQ 429

Query: 114 KVHFVHAIPKSP--SGKILRKDL 134
            V      P     + KI R+ L
Sbjct: 430 AVLIHPQFPVDIRHNAKIFRERL 452

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.6 bits (118), Expect = 9e-08
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ TA       L  TGD+     D  +  + R    +K +GF++   EIEA L  
Sbjct: 581 YLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAE 640

Query: 61  HP 62
            P
Sbjct: 641 QP 642

Length = 642

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 28/161 (17%)

Query: 1    YLNDPEATAA-----TIDVEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAE 53
            YL  P  TA           G  L  TGD+     D  +  + RV   +K +GF++   E
Sbjct: 4907 YLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGE 4966

Query: 54   IEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH 113
            IEA L  HP++ +A V+ Q +   G+  V +VV        + A+ +    Q      L 
Sbjct: 4967 IEARLREHPAVREAVVIAQ-EGAVGKQLVGYVVPQ------DPALADADEAQAELRDELK 5019

Query: 114  K------------VHFV--HAIPKSPSGKILRKDLIAKLAS 140
                          H V    +P +P+GK+ RK L    AS
Sbjct: 5020 AALRERLPEYMVPAHLVFLARMPLTPNGKLDRKALPQPDAS 5060

Length = 5163

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEII--KFKGFQVPPAEIEALL 58
           YL +P AT           TGD+G++D +  ++I  R K +I   F G  V P  +E+ L
Sbjct: 317 YLGEPPATDD------WWATGDLGHLDEEGYLYINGRKKNLIITSF-GRNVSPEWVESEL 369

Query: 59  LSHPSIADATVV 70
              P+IA A V 
Sbjct: 370 QQAPAIAQAVVF 381

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 51  PAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYK 110
           P EIE ++  HP +    VVP  D   G+ PVA VV S+  E     + E++  ++  ++
Sbjct: 366 PEEIERVINQHPLVQQVFVVPVADAEFGQRPVA-VVESD-SEAAVVNLAEWLQDKLARFQ 423

Query: 111 R 111
           +
Sbjct: 424 Q 424

Length = 458

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N P++    +  EG L T D   +D D  V    R  +     G  V P E+E L++ 
Sbjct: 353 YWNRPDSP---VANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIE 409

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAK----QVVFYKRLHKVH 116
             ++A+A VV  ++        AF+V ++G    + ++   + +    ++  +K  H+  
Sbjct: 410 DEAVAEAAVVAVRESTGASTLQAFLVATSG-ATIDGSVMRDLHRGLLNRLSAFKVPHRFA 468

Query: 117 FVHAIPKSPSGKILRKDLIAK 137
            V  +P++P+GK++R  L  +
Sbjct: 469 VVDRLPRTPNGKLVRGALRKQ 489

Length = 705

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N+PE TA  + ++G ++TGD+     D   +I  R  E+I   G  + P E++ +   
Sbjct: 388 YWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEG 446

Query: 61  HPSIADATVVPQKDEVAGE-VPVAFVVRSNGFELTEEAIKEYIA----KQVVFYKRLHKV 115
              + +A      DE  G  V +A V  +   E    A+K  IA    ++     R   +
Sbjct: 447 VSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTI 506

Query: 116 HFVHAIPKSPSGKILRKDLIAKL 138
             V  IP++ SGK++R  L A  
Sbjct: 507 VIVTDIPRTQSGKVMRASLAAAA 529

Length = 540

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 17   LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV 76
            L  TGD+  +  D  V  V R+   +K +GF++   EIE+ LL HP++ +A VV   D  
Sbjct: 2569 LYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREA-VVLALDTP 2627

Query: 77   AGEVPVAFVVRSNGFELTE------EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKIL 130
            +G+    ++V +   +  E      EA+K ++ +Q+  Y     +  + ++P + +GK+ 
Sbjct: 2628 SGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTANGKLD 2687

Query: 131  RKDLIA 136
            R+ L A
Sbjct: 2688 RRALPA 2693

Length = 4334

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIK 43
           Y    E T   +D +G  HTGD+G +  +  + I+ RVK + K
Sbjct: 521 YYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAK 563

Length = 700

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 39.3 bits (93), Expect = 2e-05
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 109 YKRLHKVHFVHAIPKSPSGKILRK 132
           Y    +V FV  +PK+ SGKILR+
Sbjct: 1   YAVPREVEFVDELPKTRSGKILRR 24

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 36/154 (23%)

Query: 1   YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           Y  +PEA+A T    D    L TGD+G++  D E+F+  R+K+++  +G  + P +IE  
Sbjct: 411 YWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGELFVTGRLKDMLIVRGHNLYPQDIEK- 468

Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFE---------------LTEEAIKEYI 102
                ++     V +K  VA     AF V   G E               L  +A+ + I
Sbjct: 469 -----TVEREVEVVRKGRVA-----AFAVNHQGEEGIGIAAEISRSVQKILPPQALIKSI 518

Query: 103 AKQVV--FYKRLHKVHFV---HAIPKSPSGKILR 131
            +Q V    +    V  +    A+PK+ SGK+ R
Sbjct: 519 -RQAVAEACQEAPSVVLLLNPGALPKTSSGKLQR 551

Length = 4334

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLL 59
           Y  D   T   ID +G LHTGDIG       + I+DR K I K  +G  + P +IE +  
Sbjct: 472 YYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYA 531

Query: 60  SHPSIADATV 69
               +A   V
Sbjct: 532 KCKFVAQCFV 541

Length = 651

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 9   AATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADAT 68
            A ID +    TGD+GY+  D  + +  R KE+I   G  + P EIE +      + +  
Sbjct: 389 QAPIDPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGA 447

Query: 69  VV 70
           VV
Sbjct: 448 VV 449

Length = 525

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 1   YLNDPEATAATI--DV----EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
           YL + +AT + +  DV    +    TGD+   D D   + +DR+ +  ++K   V   E+
Sbjct: 317 YLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEV 376

Query: 55  EALLLSHPSIADATV----VPQKDEVAG 78
             +L + PS+A+A V    VP  D  AG
Sbjct: 377 ADVLGAIPSVAEANVYGVKVPGYDGRAG 404

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 3   NDPEATAATI--DV--EG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEA 56
            DPEA+   I  DV  +G    +TGD+   D       VDR+ +  ++KG  V   E+E 
Sbjct: 420 TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVEN 479

Query: 57  LLLSHPSIADATV----VPQKDEVAG 78
            L   P + +A V    VP  D  AG
Sbjct: 480 ALSGFPGVEEAVVYGVEVPGTDGRAG 505

Length = 600

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 21  GDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80
           GD   +     V I  R    +   G ++  AEI  ++   P + D+ VV Q+ +   E 
Sbjct: 476 GDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDER 535

Query: 81  PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHF------VHAIPKSPSGKIL 130
              FV    G  L +  +K  I   +     L   H       V  IP + SGK +
Sbjct: 536 MPLFVKLREGVTLDDALVKR-IRSAIR--AALSPRHVPAEIIAVPDIPYTLSGKKV 588

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 29  DDEVF-IVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVR 87
            D  F I+ R  EI++  G  V P  +  +L  +P +  A V      + G    AF+V 
Sbjct: 287 KDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAV-----RLDGRRLKAFIVV 341

Query: 88  SNGFE--LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKI 129
           +   +    E  ++   A+ +    R  +  F   +P++ +GK+
Sbjct: 342 AEDADEAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKL 385

This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.97
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.97
PLN02654	666	acetate-CoA ligase	99.97
PLN02574	560	4-coumarate--CoA ligase-like	99.97
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.97
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.97
PLN02860	563	o-succinylbenzoate-CoA ligase	99.97
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.97
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PLN03102	579	acyl-activating enzyme; Provisional	99.97
PRK00174	637	acetyl-CoA synthetase; Provisional	99.97
PRK05852	534	acyl-CoA synthetase; Validated	99.97
PRK09088	488	acyl-CoA synthetase; Validated	99.97
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.97
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.97
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.97
PLN02246	537	4-coumarate--CoA ligase	99.97
PRK07867	529	acyl-CoA synthetase; Validated	99.97
PRK06839	496	acyl-CoA synthetase; Validated	99.96
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	99.96
PRK07470	528	acyl-CoA synthetase; Validated	99.96
PRK04319	570	acetyl-CoA synthetase; Provisional	99.96
PRK13388	540	acyl-CoA synthetase; Provisional	99.96
PRK07529	632	AMP-binding domain protein; Validated	99.96
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.96
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.96
PLN02330	546	4-coumarate--CoA ligase-like 1	99.96
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK06145	497	acyl-CoA synthetase; Validated	99.96
PRK09274	552	peptide synthase; Provisional	99.96
PRK07514	504	malonyl-CoA synthase; Validated	99.96
PRK07788	549	acyl-CoA synthetase; Validated	99.96
PRK06164	540	acyl-CoA synthetase; Validated	99.96
PRK08315	559	AMP-binding domain protein; Validated	99.96
PRK08316	523	acyl-CoA synthetase; Validated	99.96
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.96
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.96
PRK06060	705	acyl-CoA synthetase; Validated	99.96
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK12583	558	acyl-CoA synthetase; Provisional	99.96
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.96
PLN03051	499	acyl-activating enzyme; Provisional	99.96
PRK06178	567	acyl-CoA synthetase; Validated	99.96
PRK07787	471	acyl-CoA synthetase; Validated	99.96
PRK07798	533	acyl-CoA synthetase; Validated	99.96
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK07638	487	acyl-CoA synthetase; Validated	99.96
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.96
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.96
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.96
PRK05857	540	acyl-CoA synthetase; Validated	99.96
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK13390	501	acyl-CoA synthetase; Provisional	99.96
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.96
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.96
PLN02736	651	long-chain acyl-CoA synthetase	99.95
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.95
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK06188	524	acyl-CoA synthetase; Validated	99.95
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.95
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.95
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.95
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.95
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.95
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.95
PRK13391	511	acyl-CoA synthetase; Provisional	99.95
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
PRK08162	545	acyl-CoA synthetase; Validated	99.95
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.95
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.95
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.95
PLN02479	567	acetate-CoA ligase	99.95
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.95
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.95
PRK07868	994	acyl-CoA synthetase; Validated	99.95
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.95
PRK13382	537	acyl-CoA synthetase; Provisional	99.95
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.95
PLN03052	728	acetate--CoA ligase; Provisional	99.94
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.94
PRK12316	5163	peptide synthase; Provisional	99.94
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
PRK12316	5163	peptide synthase; Provisional	99.94
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK12467	3956	peptide synthase; Provisional	99.94
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.94
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.94
PRK09192	579	acyl-CoA synthetase; Validated	99.93
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.93
PRK12467	3956	peptide synthase; Provisional	99.93
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.93
PRK13383	516	acyl-CoA synthetase; Provisional	99.93
PLN02614	666	long-chain acyl-CoA synthetase	99.93
PRK05850	578	acyl-CoA synthetase; Validated	99.93
PRK05691	4334	peptide synthase; Validated	99.93
PRK08308	414	acyl-CoA synthetase; Validated	99.93
PRK05691	4334	peptide synthase; Validated	99.93
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.91
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.91
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.91
PTZ00216	700	acyl-CoA synthetase; Provisional	99.9
PTZ00342	746	acyl-CoA synthetase; Provisional	99.9
PRK12582	624	acyl-CoA synthetase; Provisional	99.89
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.89
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.87
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.86
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.85
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.84
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.74
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.72
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.69
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.56
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.48
PTZ00297	1452	pantothenate kinase; Provisional	99.42
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.1
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.04
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	98.93
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.62
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.6
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	97.87
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	96.76
KOG3628	1363	consensus Predicted AMP-binding protein [General f	96.45
PLN02249	597	indole-3-acetic acid-amido synthetase	94.25
PLN02247	606	indole-3-acetic acid-amido synthetase	88.62
PLN02620	612	indole-3-acetic acid-amido synthetase	88.43

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.8e-38  Score=239.68  Aligned_cols=142  Identities=50%  Similarity=0.778  Sum_probs=138.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+||++|++.|+.+|||+|||+|++|+||+|++.+|.+|+||.+|.+|+|.+||+.|..||.|.+++|++.++..+|+.
T Consensus       393 Y~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~  472 (537)
T KOG1176|consen  393 YLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGET  472 (537)
T ss_pred             hcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCc
Confidence            99999999999987799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ++++|+.+++...+++++.+.++++++.++.|..+.|+++||+|++||++|+.|++.+.+..
T Consensus       473 p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~  534 (537)
T KOG1176|consen  473 PAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLG  534 (537)
T ss_pred             ceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999987643

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.4e-33  Score=213.14  Aligned_cols=140  Identities=44%  Similarity=0.684  Sum_probs=133.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|..+|||+|||++++|++|.++|.||.+|+|+++|++|+|.+||+.+.+++.|.++.+++.++..+|+.
T Consensus       386 Y~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~  465 (534)
T COG0318         386 YWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGER  465 (534)
T ss_pred             hcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCce
Confidence            99999999999875699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCC--CccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNG--FELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++++..+  ...+.+++.+++++.++.+.+|+.+.+++++|+|++||++|+.|++++..
T Consensus       466 ~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         466 VVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             EEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            9999999876  34478999999999999999999999999999999999999999999876

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=7.2e-33  Score=203.79  Aligned_cols=143  Identities=31%  Similarity=0.412  Sum_probs=137.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|++....+.||+|||++.+|++|.+.++||.+|+|+.+|++|+|.+||+.|.++|.|.++.+++.++...|+.
T Consensus       446 Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~  525 (596)
T KOG1177|consen  446 YWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEE  525 (596)
T ss_pred             ecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccce
Confidence            89999999999998999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCc--cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977           81 PVAFVVRSNGFE--LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMP  143 (145)
Q Consensus        81 ~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~  143 (145)
                      +|+++.++.+.+  .+.++|.++++.++..+.+|+.+++++++|+|.+|||++-++++++...+.
T Consensus       526 VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l~  590 (596)
T KOG1177|consen  526 VCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHLG  590 (596)
T ss_pred             EEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhcc
Confidence            999999988876  478999999999999999999999999999999999999999999986654

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.97  E-value=3.7e-31  Score=201.38  Aligned_cols=139  Identities=35%  Similarity=0.515  Sum_probs=127.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+||+.+.+.+- ++||.|||.+++|+||+++|+||.||+||++|++|.+.+||++|.+||.|.++.+++.++...|+.
T Consensus       382 ~w~d~er~~~~y~-~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~  460 (528)
T COG0365         382 YWNDPERYKEAYF-GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQI  460 (528)
T ss_pred             hhCCHHHHHHHHh-hceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcE
Confidence            8999999999885 339999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCccC--HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELT--EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~--~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +.+||++.++...+  .+++.+++++.+.++..|+.+.++++||+|.||||.|+.|++.+.+
T Consensus       461 v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         461 VLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             EEEEEEecCCCChHHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence            99999999876544  3566677767777899999999999999999999999999998773

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.97  E-value=8.1e-31  Score=206.01  Aligned_cols=140  Identities=24%  Similarity=0.392  Sum_probs=126.3

Q ss_pred             CCCChhhhhcccCC-CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDV-EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++++.+.+.|.. +|||+|||++++|++|+++++||+||+||++|++|+|.+||+.|.++|.|.++++++.++...++
T Consensus       476 y~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~  555 (647)
T PTZ00237        476 FYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYN  555 (647)
T ss_pred             eeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCC
Confidence            89999999988853 79999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eeEEEEEeCCCC---ccCH----HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           80 VPVAFVVRSNGF---ELTE----EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        80 ~~~~~v~~~~~~---~~~~----~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      .++++|++..+.   ..+.    +++.+.+++.++.+.+|+.+++++++|+|++||++|+.|++++..
T Consensus       556 ~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  623 (647)
T PTZ00237        556 VPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND  623 (647)
T ss_pred             EEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence            999998887432   2232    456777888999999999999999999999999999999998754

>PLN02654 acetate-CoA ligase

Probab=99.97  E-value=1.4e-30  Score=205.22  Aligned_cols=140  Identities=30%  Similarity=0.450  Sum_probs=128.2

Q ss_pred             CCCChhhhhccc--CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~--~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++++.+...+  ..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+++.++|.|.++++++.++...+
T Consensus       496 y~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~g  575 (666)
T PLN02654        496 LYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKG  575 (666)
T ss_pred             hcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCC
Confidence            899999887765  237999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             ceeEEEEEeCCCCccCH---HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           79 EVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +.++++|++.++...+.   +++.+.++++|+.+++|+.++++++||+|++||++|+.|++.+..
T Consensus       576 e~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        576 QGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR  640 (666)
T ss_pred             eEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence            99999999887654433   478889999999999999999999999999999999999998765

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.97  E-value=2.4e-30  Score=200.23  Aligned_cols=142  Identities=57%  Similarity=0.948  Sum_probs=132.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|.+.|..+|||+|||++++|++|.+++.||.+|+|+++|.+|+|.+||..|.+++.|.++++++.++...++.
T Consensus       415 Y~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~  494 (560)
T PLN02574        415 YLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEI  494 (560)
T ss_pred             hcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcc
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++....+...+.+++.+.++++++.++.|..+.++++||+|++||++|+.|++.+.+..
T Consensus       495 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~  556 (560)
T PLN02574        495 PVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSV  556 (560)
T ss_pred             eEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhcc
Confidence            88888877666667789999999999999999999999999999999999999999987654

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.97  E-value=1.9e-30  Score=204.10  Aligned_cols=140  Identities=21%  Similarity=0.262  Sum_probs=125.9

Q ss_pred             CCCChhhhh---ccc-CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC
Q 038977            1 YLNDPEATA---ATI-DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV   76 (145)
Q Consensus         1 Y~~~~~~t~---~~~-~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~   76 (145)
                      ||++++.|.   ..| ..+|||+|||++++|+||.++++||+||+|+++|.+|+|.+||++|.++|.|.++++++.++..
T Consensus       480 y~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~  559 (652)
T TIGR01217       480 FWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPD  559 (652)
T ss_pred             eeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCC
Confidence            899998664   223 2378999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCceeEEEEEeCCCCccCH---HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           77 AGEVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      .++.++++|++.++...+.   +++.+++++.++.+++|..+.++++||+|++||++|+.|++.+..
T Consensus       560 ~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~  626 (652)
T TIGR01217       560 GGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQG  626 (652)
T ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcC
Confidence            8999999999887654443   588999999999999999999999999999999999999998743

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=3.4e-30  Score=199.44  Aligned_cols=144  Identities=35%  Similarity=0.540  Sum_probs=134.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|..+|||+|||++++|++|.+++.||.+|+|+++|.+|+|.+||+.+..++.|.++++++.++...++.
T Consensus       418 Y~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~  497 (562)
T PRK05677        418 YWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEA  497 (562)
T ss_pred             hcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCce
Confidence            89999999999987999999999999999999999999999999999999999999999999999999999998887888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPL  144 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~~  144 (145)
                      +++++++..+...+.+++.+.+++.++.+++|..++++++||+|++||++|++|++++....++
T Consensus       498 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~~~  561 (562)
T PRK05677        498 IKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKAGL  561 (562)
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhccC
Confidence            8888887766667788999999999999999999999999999999999999999988776654

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.97  E-value=2.8e-30  Score=200.03  Aligned_cols=142  Identities=29%  Similarity=0.467  Sum_probs=128.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|..+|||+|||++++|++|.+++.||.+|+|+++|.+|+|.+||+.+.++|.|.++++++.++...++.
T Consensus       399 Y~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~  478 (563)
T PLN02860        399 YWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEM  478 (563)
T ss_pred             ccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCce
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             eEEEEEeCCCC--------------ccCHHHHHHHHHh-ccccccCceEEEEe-ccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGF--------------ELTEEAIKEYIAK-QVVFYKRLHKVHFV-HAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~--------------~~~~~~l~~~l~~-~l~~~~~p~~~~~v-~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++++.++.              ..+.+++.+++.+ .++.+++|..++++ +.+|+|++||++|++|++++.+..
T Consensus       479 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~  556 (563)
T PLN02860        479 VVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHL  556 (563)
T ss_pred             EEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHHHH
Confidence            99998877542              2345678888887 59999999988765 679999999999999999987665

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.97  E-value=6.6e-30  Score=200.01  Aligned_cols=141  Identities=33%  Similarity=0.505  Sum_probs=128.7

Q ss_pred             CCCChhhhhcccC--CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATID--VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~~--~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++++.+.+.+.  .+|||+|||++++|++|.++++||+||+|+++|.+|+|.+||++|.++|.|.++++++.++...+
T Consensus       458 y~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g  537 (625)
T TIGR02188       458 IYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKG  537 (625)
T ss_pred             ccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCC
Confidence            8999988877652  47899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ceeEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.+++++++..+...+   .+++.+.+++.++.+++|+.++++++||+|++||++|+.|++.+...
T Consensus       538 ~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       538 QAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             eEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            9999999888765443   36889999999999999999999999999999999999999987654

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=1.4e-29  Score=186.48  Aligned_cols=137  Identities=28%  Similarity=0.444  Sum_probs=125.2

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..+  .|..+|||+|||++++ ++|.+++.||.||+|+++|.+|+|.+||..+.++|.|.++++++.++...++.
T Consensus       221 Y~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~  297 (358)
T PRK07824        221 YRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQR  297 (358)
T ss_pred             cCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceE
Confidence            78888744  4555789999999999 89999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++....+.....+++.+.+++.++.+++|..+.++++||+|++||++|++|++++.+
T Consensus       298 ~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        298 VVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             EEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence            888887776666778899999999999999999999999999999999999999999865

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.97  E-value=8.9e-30  Score=197.91  Aligned_cols=139  Identities=34%  Similarity=0.538  Sum_probs=127.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|. +|||+|||++++|++|++++.||.+|+|+++|.+|+|.+||+.+.++|.|.++++++.++...++.
T Consensus       406 Y~~~~~~t~~~f~-~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~  484 (579)
T PLN03102        406 YLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGET  484 (579)
T ss_pred             hcCChhhhHhhhc-cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccce
Confidence            8999999999996 899999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             eEEEEEeCCCCcc----------CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFEL----------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~----------~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++.+..+...          ...++.+.++++|+.++.|..+++++++|+|++||++|++|++++.+
T Consensus       485 ~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~  554 (579)
T PLN03102        485 PCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG  554 (579)
T ss_pred             eEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence            8888887654332          34678999999999999999999999999999999999999998754

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.97  E-value=1.2e-29  Score=198.98  Aligned_cols=141  Identities=29%  Similarity=0.477  Sum_probs=128.3

Q ss_pred             CCCChhhhhccc--CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~--~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++++.+.+.+  ..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||++|.+++.|.++++++.++...+
T Consensus       466 y~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g  545 (637)
T PRK00174        466 IYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKG  545 (637)
T ss_pred             ccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCC
Confidence            899999887765  347899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ceeEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.+++++++..+...+   .+++.+.+++.++.+++|..+++++.||+|++||++|+.|++.+...
T Consensus       546 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        546 QGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             eEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            8999999887765433   46899999999999999999999999999999999999999887544

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.97  E-value=6.4e-30  Score=196.75  Aligned_cols=140  Identities=27%  Similarity=0.493  Sum_probs=131.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|++.|. +|||+|||++++|++|++++.||.+|+|+++|.+|+|.+||+++.+++.|.++++++.++...++.
T Consensus       394 Y~~~~~~t~~~~~-~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~  472 (534)
T PRK05852        394 YLGDPTITAANFT-DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEA  472 (534)
T ss_pred             hcCCcccchhhhc-CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCce
Confidence            8999999999985 899999999999999999999999999999999999999999999999999999999998877888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      ++++++.......+.+++.+.++++++.+++|..++++++||+|++||++|++|++++.+.
T Consensus       473 ~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~  533 (534)
T PRK05852        473 VAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS  533 (534)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhccc
Confidence            8888887666666788999999999999999999999999999999999999999998754

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.2e-29  Score=191.71  Aligned_cols=141  Identities=35%  Similarity=0.523  Sum_probs=130.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|+..|..+|||+|||++++|++|.+++.||.+|+|+++|.+|+|.+||+.|.+++.|.++++++.++...++.
T Consensus       346 Y~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~  425 (488)
T PRK09088        346 YWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEV  425 (488)
T ss_pred             hcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCce
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999988777777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      .++++.+......+..++.+.+++.++.++.|..+.+++.||+|++||++|++|++++.+.
T Consensus       426 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        426 GYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence            7888887766556778999999999999999999999999999999999999999998764

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.97  E-value=1.5e-29  Score=198.91  Aligned_cols=141  Identities=23%  Similarity=0.289  Sum_probs=124.9

Q ss_pred             CCCChhhhh---ccc-CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC
Q 038977            1 YLNDPEATA---ATI-DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV   76 (145)
Q Consensus         1 Y~~~~~~t~---~~~-~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~   76 (145)
                      ||++++.+.   ..| ..+|||+|||++++|++|.++++||.||+||++|.+|+|.+||++|.++|.|.++++++.++..
T Consensus       479 y~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~  558 (655)
T PRK03584        479 FWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPD  558 (655)
T ss_pred             eeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCC
Confidence            889887653   112 2268999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCceeEEEEEeCCCCccCH---HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           77 AGEVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      .++.+++++++..+...+.   +++.+.+++.++.+++|..+++++.||+|++||++|+.|++.+...
T Consensus       559 ~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~  626 (655)
T PRK03584        559 GDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGR  626 (655)
T ss_pred             CCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            8889999999877654443   5789999999999999999999999999999999999999987643

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.97  E-value=1.9e-29  Score=197.67  Aligned_cols=140  Identities=31%  Similarity=0.433  Sum_probs=125.2

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~   77 (145)
                      ||++++.+.+.+   ..++||+|||++++|++|.++++||.||+||++|.+|+|.+||++|.++|.|.++++++.++...
T Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~  533 (628)
T TIGR02316       454 VWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELK  533 (628)
T ss_pred             ccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCC
Confidence            788888776654   24789999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CceeEEEEEeCCCCc--------cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           78 GEVPVAFVVRSNGFE--------LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        78 ~~~~~~~v~~~~~~~--------~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      ++.+++++++..+..        ...+++.++++++|+.+++|..+++++.||+|++||++|+.|++.++.
T Consensus       534 g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~  604 (628)
T TIGR02316       534 GQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG  604 (628)
T ss_pred             CeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence            889999988775432        124678999999999999999999999999999999999999987653

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.97  E-value=4.7e-29  Score=188.99  Aligned_cols=130  Identities=30%  Similarity=0.415  Sum_probs=120.6

Q ss_pred             CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCcc
Q 038977           14 VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFEL   93 (145)
Q Consensus        14 ~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   93 (145)
                      .+|||+|||++++|++|++++.||.||+|+++|.+|+|.+||+.+.++|.|.++++++.++...++.++++++...+ ..
T Consensus       322 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~  400 (452)
T PRK07445        322 SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SI  400 (452)
T ss_pred             CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CC
Confidence            47999999999999999999999999999999999999999999999999999999999988888888888877654 35


Q ss_pred             CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCCC
Q 038977           94 TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPL  144 (145)
Q Consensus        94 ~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~~  144 (145)
                      +.+++.++++++++.+++|..+++++++|+|++||++|+.|++++.+++.+
T Consensus       401 ~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~  451 (452)
T PRK07445        401 SLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLGL  451 (452)
T ss_pred             CHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhCC
Confidence            678999999999999999999999999999999999999999999988754

>PLN02246 4-coumarate--CoA ligase

Probab=99.97  E-value=3e-29  Score=193.20  Aligned_cols=140  Identities=79%  Similarity=1.217  Sum_probs=131.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.+.+.|..+|||+|||+++++++|.+++.||.|++++++|.+|+|.+||+.+.++++|.++++++.++...++.
T Consensus       397 Y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  476 (537)
T PLN02246        397 YLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEV  476 (537)
T ss_pred             ccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCce
Confidence            89999999999987999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++....+...+.+++.+.+++.++.++.|..+.+++++|+|++||++|++|++++.+
T Consensus       477 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        477 PVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             eEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            888888877666677899999999999999999999999999999999999999998864

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.97  E-value=4.5e-29  Score=192.17  Aligned_cols=140  Identities=27%  Similarity=0.451  Sum_probs=130.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.+.+.|. +|||+|||+++++++|.+++.||.||+++++|.+|+|.+||+.+.++|.|.++++++.++...++.
T Consensus       367 y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~  445 (529)
T PRK07867        367 YYNDPEADAERMR-GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQ  445 (529)
T ss_pred             ccCChHhhhhhhc-CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCee
Confidence            8999999999995 899999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc--cccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ--VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++....+...+..++.+.+..+  ++.++.|..+.+++++|+|++||++|++|+++....
T Consensus       446 ~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~  508 (529)
T PRK07867        446 VMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDC  508 (529)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCC
Confidence            9988888777667788888888765  999999999999999999999999999999977544

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.96  E-value=4.9e-29  Score=189.84  Aligned_cols=139  Identities=35%  Similarity=0.547  Sum_probs=130.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...+. +|||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||+.+..+++|.++++++.++...++.
T Consensus       357 y~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~  435 (496)
T PRK06839        357 YWNRPDATEETIQ-DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEI  435 (496)
T ss_pred             hcCChHHHHHHHc-CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCce
Confidence            8999999998885 899999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++.+.++...+.+++.+.++..++.+++|..+++++++|+|++||++|++|+++..+
T Consensus       436 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        436 PIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence            899998887777778899999999999999999999999999999999999999988764

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.96  E-value=2.5e-29  Score=192.86  Aligned_cols=141  Identities=33%  Similarity=0.492  Sum_probs=127.1

Q ss_pred             CCCChh-hhhccc-CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPE-ATAATI-DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~-~t~~~~-~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||+|++ -....| ...|+|.|||.+++|++|++++.||.||+|+++|+++++.+||+++..||.|.++.+++.+++..|
T Consensus       458 ~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~g  537 (626)
T KOG1175|consen  458 LWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKG  537 (626)
T ss_pred             ccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCC
Confidence            688888 333333 569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEeCCCCccCH---HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.+++|+++.++....+   .+|..++++.+.++..|+.|.+++.||+|.|||+.|+.|++.+...
T Consensus       538 e~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  538 EVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             eEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence            99999999998854332   5778888889999999999999999999999999999999887654

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.96  E-value=7.5e-29  Score=190.47  Aligned_cols=143  Identities=34%  Similarity=0.525  Sum_probs=131.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.++..|. +|||+|||+++++++|++++.||.||+++++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       380 y~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  458 (528)
T PRK07470        380 YYNNPEANAKAFR-DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEV  458 (528)
T ss_pred             hcCCHHHHHhhhc-CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCce
Confidence            8999999998885 899999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPL  144 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~~  144 (145)
                      .++++...++...+.+++.+++.+.|+.+++|..++++++||+|++||++|+.|++++++...+
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~  522 (528)
T PRK07470        459 GVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGLL  522 (528)
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhcccc
Confidence            7888877766556788999999999999999999999999999999999999999998876644

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.96  E-value=6.2e-29  Score=192.73  Aligned_cols=138  Identities=33%  Similarity=0.520  Sum_probs=127.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|...|. +|||+|||+++++++|.++++||.+|+|+++|++|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       418 Y~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~  496 (570)
T PRK04319        418 IWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEI  496 (570)
T ss_pred             hcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceE
Confidence            8999999999996 899999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977           81 PVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        81 ~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      +++++++.++...+   .+++...++++++.++.|..++++++||+|++||++|+.|+++..
T Consensus       497 ~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        497 IKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence            88888877654433   258889999999999999999999999999999999999999864

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=6.1e-29  Score=191.79  Aligned_cols=139  Identities=29%  Similarity=0.499  Sum_probs=127.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|. +|||+|||++++|++|.++++||.+|+|+++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       366 Y~~~~~~t~~~~~-~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~  444 (540)
T PRK13388        366 YYNNPEATAERMR-HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQ  444 (540)
T ss_pred             ccCChHHHHHHhh-cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCce
Confidence            8999999999995 899999999999999999999999999999999999999999999999999999999998877888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc--cccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ--VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++.+..+...+..++.+.+..+  ++.++.|..++++++||+|++||++|++|+++...
T Consensus       445 ~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~  506 (540)
T PRK13388        445 VMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWA  506 (540)
T ss_pred             eEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccC
Confidence            8888887776666777888888764  99999999999999999999999999999987643

>PRK07529 AMP-binding domain protein; Validated

Probab=99.96  E-value=8.2e-29  Score=194.26  Aligned_cols=139  Identities=32%  Similarity=0.499  Sum_probs=126.8

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++. +...|..+|||+|||++++|++|.+++.||.||+|+++|.+|+|.+||+.|.++|.|.++.+++.++...++.
T Consensus       431 Y~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~  509 (632)
T PRK07529        431 YLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGEL  509 (632)
T ss_pred             ccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCce
Confidence            777654 5556656899999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccc-cccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVV-FYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++++..+...+.+++.++++++++ .+++|..++++++||+|++||++|.+|++.+..
T Consensus       510 ~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~  570 (632)
T PRK07529        510 PVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIR  570 (632)
T ss_pred             eEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHH
Confidence            999999888777788899999999986 579999999999999999999999999988755

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.96  E-value=1.1e-28  Score=190.49  Aligned_cols=138  Identities=31%  Similarity=0.437  Sum_probs=128.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|...|. ++||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||+.+.++++|.++++++.++...++.
T Consensus       386 Y~~~~~~~~~~~~-~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~  464 (542)
T PRK06155        386 YFGMPEKTVEAWR-NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDE  464 (542)
T ss_pred             hcCCHHHHHHhhc-CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCce
Confidence            8999999999985 899999999999999999999999999999999999999999999999999999999988877788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      +.+++.+..+...+..++.+.++++++.+++|..+.+++++|+|++||++|++|++++.
T Consensus       465 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~  523 (542)
T PRK06155        465 VMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV  523 (542)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence            88888877776777889999999999999999999999999999999999999998764

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.96  E-value=7.1e-29  Score=190.08  Aligned_cols=135  Identities=37%  Similarity=0.583  Sum_probs=127.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|++.|..+|||+|||++++|++|.++++||.+|+++++|.+|+|.+||..+..++.|.++++++.++...++.
T Consensus       383 y~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~  462 (517)
T PRK08008        383 YYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEA  462 (517)
T ss_pred             HhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCce
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLI  135 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~  135 (145)
                      +.+++.+..+...+..++.+++++.++.+.+|..+.+++++|+|++||++|+.|+
T Consensus       463 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        463 IKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence            8888888877667778999999999999999999999999999999999998763

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.96  E-value=6.6e-29  Score=191.65  Aligned_cols=145  Identities=54%  Similarity=0.859  Sum_probs=134.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+.+.++.+|||+|||+++++++|.++++||.+|+++++|.+|+|.+||..+.+++.|.++++++.++...++.
T Consensus       402 y~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~  481 (546)
T PLN02330        402 YYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI  481 (546)
T ss_pred             hccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCce
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCCCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPLN  145 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~~~  145 (145)
                      +++++.+..+...+.+++.+.++.+++.++.|..+++++++|+|++||++|+.|++++.....+|
T Consensus       482 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~~~~  546 (546)
T PLN02330        482 PAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSINKAN  546 (546)
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhhcCC
Confidence            88888887766667788999999999999999999999999999999999999999997655443

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=1.9e-28  Score=190.02  Aligned_cols=142  Identities=35%  Similarity=0.541  Sum_probs=132.2

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...|. +|||+|||+++++++|.+++.||.||+++++|.+|+|.+||+.+..++.|.++++++.++...++.
T Consensus       431 y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~  509 (573)
T PRK05605        431 YWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEE  509 (573)
T ss_pred             hcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeE
Confidence            8899999999985 679999999999999999999999999999999999999999999999999999999988877788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMP  143 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~  143 (145)
                      +++++++..+...+..++.+.+++.++.+++|..+++++++|+|.+||++|++|++++.+.++
T Consensus       510 ~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        510 VVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHhc
Confidence            888888877766778899999999999999999999999999999999999999999987653

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.7e-28  Score=187.07  Aligned_cols=138  Identities=30%  Similarity=0.529  Sum_probs=129.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|...|. ++||+|||+++++++|.++++||.|++|+++|.+|+|.+||+.+.++++|.++++++..+...++.
T Consensus       359 y~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  437 (497)
T PRK06145        359 YWKDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGER  437 (497)
T ss_pred             hcCChHHHHHHHh-CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCce
Confidence            8999999999985 899999999999999999999999999999999999999999999999999999999988877788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      +++++++......+..++.++++++++.++.|..+.+++++|+|++||++|++|+++++
T Consensus       438 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        438 ITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence            88888887666667889999999999999999999999999999999999999999875

>PRK09274 peptide synthase; Provisional

Probab=99.96  E-value=2.1e-28  Score=188.97  Aligned_cols=142  Identities=21%  Similarity=0.327  Sum_probs=120.4

Q ss_pred             CCCChhhhhccc--CCCC--eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC
Q 038977            1 YLNDPEATAATI--DVEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV   76 (145)
Q Consensus         1 Y~~~~~~t~~~~--~~~~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~   76 (145)
                      ||++|+.|...|  +.+|  ||+|||++++|++|.+++.||.||+|+++|.+|+|.+||+.|.++|.|.++++++.++. 
T Consensus       401 Y~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-  479 (552)
T PRK09274        401 YYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP-  479 (552)
T ss_pred             ccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC-
Confidence            999999999876  3356  99999999999999999999999999999999999999999999999999999998775 


Q ss_pred             CCceeEEEEEeCCCCccCHHHHHHHHHhcccc---ccCceEEEEeccCCCC--CCCcccHHHHHHHHHccCC
Q 038977           77 AGEVPVAFVVRSNGFELTEEAIKEYIAKQVVF---YKRLHKVHFVHAIPKS--PSGKILRKDLIAKLASSMP  143 (145)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~---~~~p~~~~~v~~~p~t--~~gK~~r~~l~~~~~~~~~  143 (145)
                      .++.+++++++..+...+..++.+.+++.+..   ...|..+.++++||+|  ++||++|++|++++.+...
T Consensus       480 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~~  551 (552)
T PRK09274        480 GAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQLK  551 (552)
T ss_pred             CCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHHhhc
Confidence            45667778877766555555566666555544   4577889999999999  7999999999999887653

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.96  E-value=3.4e-28  Score=185.66  Aligned_cols=141  Identities=30%  Similarity=0.464  Sum_probs=131.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+++.|..++||+|||+++++++|.+++.||.||+|+++|.+|+|.+||+.+..+++|.++++++.++...++.
T Consensus       362 y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  441 (504)
T PRK07514        362 YWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEG  441 (504)
T ss_pred             ccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCce
Confidence            89999999999987899999999999999999999999999999999999999999999999999999999988777778


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      ++++++.......+..++.+.+++.++.++.|..+++++++|+|++||++|++|++++.+.
T Consensus       442 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        442 VTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            8888888776666778999999999999999999999999999999999999999988754

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.5e-28  Score=189.71  Aligned_cols=132  Identities=38%  Similarity=0.693  Sum_probs=121.8

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..  . + .+|||+|||++++|++|.+++.||.||+|+++|.+|+|.+||+.+.++|.|.++++++.++...++.
T Consensus       416 Y~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~  491 (549)
T PRK07788        416 YTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQR  491 (549)
T ss_pred             ccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccE
Confidence            7777664  2 2 3799999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      +++++++..+...+.+++.+.++++++.+++|..+++++++|+|++||++|++|++
T Consensus       492 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  547 (549)
T PRK07788        492 LRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELRE  547 (549)
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhc
Confidence            99999888776678889999999999999999999999999999999999999975

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.96  E-value=4e-28  Score=186.88  Aligned_cols=140  Identities=32%  Similarity=0.508  Sum_probs=128.5

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|...|..+|||+|||++++|++|.+++.||.+++++++|.+|+|.+||+.+..++.|.++++++.+. .++..
T Consensus       391 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~  469 (540)
T PRK06164        391 YLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTV  469 (540)
T ss_pred             ccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCcee
Confidence            89999999999988999999999999999999999999999999999999999999999999999999998874 34567


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCC---cccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSG---KILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~g---K~~r~~l~~~~~~~  141 (145)
                      +++++++..+...+.+++.+.++++++.+++|..+++++.+|+|++|   |++|+.|++++.+.
T Consensus       470 ~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~  533 (540)
T PRK06164        470 PVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQAR  533 (540)
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHh
Confidence            78888877666677889999999999999999999999999999999   99999999987654

>PRK08315 AMP-binding domain protein; Validated

Probab=99.96  E-value=4.6e-28  Score=187.12  Aligned_cols=144  Identities=36%  Similarity=0.594  Sum_probs=132.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.++..|..++||+|||+++++++|.++++||.+++++++|.+|++.+||+.+.+++.|.++++++..+...++.
T Consensus       412 y~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  491 (559)
T PRK08315        412 YWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEE  491 (559)
T ss_pred             hcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeE
Confidence            89999999999877999999999999999999999999999999999999999999999999999999999988776778


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMPL  144 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~~  144 (145)
                      +++++.+......+.+++.+.+.+.++.+++|..+++++.+|+|++||++|.+|++++....++
T Consensus       492 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~~~  555 (559)
T PRK08315        492 VCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGL  555 (559)
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhhch
Confidence            8888887766566778999999999999999999999999999999999999999998776653

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.3e-28  Score=186.24  Aligned_cols=141  Identities=34%  Similarity=0.568  Sum_probs=131.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+++.|. +|||+|||+++++++|.+++.||.|++++++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       381 y~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  459 (523)
T PRK08316        381 YWDDPEKTAEAFR-GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEA  459 (523)
T ss_pred             hcCCHHHHHHHhh-CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCe
Confidence            8899999999985 899999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ++++++.........+++.+.++++++.++.|..+++++++|+|++||++|++|+++|.+.+
T Consensus       460 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~  521 (523)
T PRK08316        460 VTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF  521 (523)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence            88888887766667788999999999999999999999999999999999999999998654

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.96  E-value=5.1e-28  Score=189.53  Aligned_cols=140  Identities=34%  Similarity=0.454  Sum_probs=124.4

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~   77 (145)
                      ||++++.+.+.+   ..++||+|||++++|++|.+++.||.||+||++|.+|+|.+||++|.++|.|.++++++.++...
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~  534 (629)
T PRK10524        455 VWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALK  534 (629)
T ss_pred             ccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCC
Confidence            788887766543   24689999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CceeEEEEEeCCCCcc--------CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           78 GEVPVAFVVRSNGFEL--------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        78 ~~~~~~~v~~~~~~~~--------~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      ++.+++++++..+...        ..+++.+.+++.++.+++|..+++++.||+|++||++|+.|++.++.
T Consensus       535 g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~  605 (629)
T PRK10524        535 GQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG  605 (629)
T ss_pred             CeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence            8888999887664322        23678899999999999999999999999999999999999988753

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=4.9e-29  Score=180.54  Aligned_cols=141  Identities=32%  Similarity=0.564  Sum_probs=133.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+.|+-|+++|+.+|||+|||++++|++|++.+.||.+|+|+.+|++|..++||+.|..||.|.++.+++.++...|+.
T Consensus       399 Yyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEk  478 (542)
T COG1021         399 YYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEK  478 (542)
T ss_pred             eccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      .|++++.... ..+..++...+.+. +..+.+|.++.+++.+|.|+-|||+++.|++++....
T Consensus       479 sCAfiv~~~~-~~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~~  540 (542)
T COG1021         479 SCAFIVVKEP-PLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL  540 (542)
T ss_pred             eeEEEEecCC-CCCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhhc
Confidence            9999998764 36778999999876 9999999999999999999999999999999987654

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.96  E-value=2.2e-28  Score=193.80  Aligned_cols=135  Identities=26%  Similarity=0.450  Sum_probs=120.5

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      |||+|+.+   +..+|||+|||+++++++|+++++||.||+||++|.+|+|.+||..+.+++.|.++++++.++...++.
T Consensus       353 Y~~~~~~~---~~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~  429 (705)
T PRK06060        353 YWNRPDSP---VANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGAST  429 (705)
T ss_pred             hhCCCccc---ccCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCee
Confidence            89998865   335899999999999999999999999999999999999999999999999999999999988877778


Q ss_pred             eEEEEEeCCCCccCH---HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHH
Q 038977           81 PVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKL  138 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~  138 (145)
                      ++++++.......+.   .++.+.++++|+.+++|..++++++||+|++||++|++|++.+
T Consensus       430 ~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~  490 (705)
T PRK06060        430 LQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS  490 (705)
T ss_pred             EEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence            888887765433332   5788899999999999999999999999999999999999865

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=4.9e-28  Score=186.51  Aligned_cols=142  Identities=40%  Similarity=0.592  Sum_probs=127.9

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~   77 (145)
                      ||++++.|.+.|   ++.+||+|||+++++++|.+++.||.||+++++|.+|+|.+||+.+.++++|.++++++.++...
T Consensus       398 Y~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~  477 (546)
T PRK08314        398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRR  477 (546)
T ss_pred             ccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCccc
Confidence            899999998887   33569999999999999999999999999999999999999999999999999999999988877


Q ss_pred             CceeEEEEEeCCCC--ccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           78 GEVPVAFVVRSNGF--ELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        78 ~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ++.+++++++..+.  ..+..++.+++++.++.+++|..++++++||+|.+||++|++|++......
T Consensus       478 ~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~~  544 (546)
T PRK08314        478 GETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKARA  544 (546)
T ss_pred             CceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhhc
Confidence            88888888877653  234578999999999999999999999999999999999999988766543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=6.6e-28  Score=186.13  Aligned_cols=142  Identities=35%  Similarity=0.542  Sum_probs=131.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..+...|..++||+|||+++++++|.+++.||.+++++++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       413 y~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  492 (558)
T PRK12583        413 YWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEE  492 (558)
T ss_pred             hcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcE
Confidence            89999999998877999999999999999999999999999999999999999999999999999999999988777788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ++++++...+...+..++.+.++++|+.++.|..+++++++|+|++||++|++|+++..+..
T Consensus       493 ~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~  554 (558)
T PRK12583        493 IVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEEL  554 (558)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhc
Confidence            88888877666667789999999999999999999999999999999999999999887654

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=2.7e-28  Score=189.34  Aligned_cols=141  Identities=28%  Similarity=0.466  Sum_probs=126.8

Q ss_pred             CCCChhhh----------------hcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCc
Q 038977            1 YLNDPEAT----------------AATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSI   64 (145)
Q Consensus         1 Y~~~~~~t----------------~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v   64 (145)
                      ||++++.|                ...|..+|||+|||+++++++|.+++.||.+++|+++|.+|+|.+||..|.++|.|
T Consensus       399 Y~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v  478 (576)
T PRK05620        399 YYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEV  478 (576)
T ss_pred             ccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCc
Confidence            89998887                33344579999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeecCCCCCceeEEEEEeCCCCc---cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           65 ADATVVPQKDEVAGEVPVAFVVRSNGFE---LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      .++++++.++...++.+++++.+..+..   ...+++.+.++++|+.++.|..+++++++|+|.+||++|+.|++++.++
T Consensus       479 ~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        479 VECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             eEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhcC
Confidence            9999999999888888888877765533   3468899999999999999999999999999999999999999998854

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.96  E-value=3.4e-28  Score=187.42  Aligned_cols=139  Identities=32%  Similarity=0.532  Sum_probs=129.2

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|.+.|..+|||+|||++++|++|.+++.||.+|+++++|.+|+|.+||..+.++++|.++++++.++...++.
T Consensus       394 Y~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  473 (536)
T PRK10946        394 YYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEK  473 (536)
T ss_pred             hcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCce
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999998887888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++++..+  .+..++.+.+.+. ++.++.|..+.+++++|+|++||++|++|++++.+.
T Consensus       474 ~~a~vv~~~~--~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~  533 (536)
T PRK10946        474 SCAFLVVKEP--LKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR  533 (536)
T ss_pred             EEEEEEeCCC--CCHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhh
Confidence            8888887654  6778899999875 999999999999999999999999999999987654

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.96  E-value=3.5e-28  Score=186.05  Aligned_cols=141  Identities=22%  Similarity=0.302  Sum_probs=114.3

Q ss_pred             CCCChhhhhcccCC--------CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCcceEEEEe
Q 038977            1 YLNDPEATAATIDV--------EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS-HPSIADATVVP   71 (145)
Q Consensus         1 Y~~~~~~t~~~~~~--------~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~-~~~v~~~~~~~   71 (145)
                      ||+++ .++..+++        .+||+|||++++|++|+++++||.||+||++|.+|+|.+||+.|.+ +|.|.++.+++
T Consensus       335 y~~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg  413 (499)
T PLN03051        335 LLNAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVG  413 (499)
T ss_pred             ccCCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEE
Confidence            78765 34433322        1278999999999999999999999999999999999999999986 89999999999


Q ss_pred             ecCCCCC-ceeEEEE---EeCCCC-ccCHHHHHHHH----HhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           72 QKDEVAG-EVPVAFV---VRSNGF-ELTEEAIKEYI----AKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        72 ~~~~~~~-~~~~~~v---~~~~~~-~~~~~~l~~~l----~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      .++..++ +.+++++   ++..+. ..+.+++.+.+    .++++.+..|..+.++++||+|++||++|++|++.+.+..
T Consensus       414 ~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  493 (499)
T PLN03051        414 VAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKEL  493 (499)
T ss_pred             ecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhh
Confidence            9988888 5777777   555543 34455565554    4557776777789999999999999999999999887654

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.96  E-value=4.3e-28  Score=187.78  Aligned_cols=139  Identities=39%  Similarity=0.638  Sum_probs=128.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+++.|. +|||+|||+++++++|+++++||++|+++++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       428 Y~~~~~~~~~~~~-dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  506 (567)
T PRK06178        428 YWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQV  506 (567)
T ss_pred             ccCChhhhhhccc-CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcc
Confidence            8999999999885 889999999999999999999999999999999999999999999999999999999888777788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++++..+...+.+++.+.++++++.+.+|. +++++++|+|++||++|++|++++++.
T Consensus       507 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        507 PVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             eEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence            888888877666678899999999999999997 888999999999999999999988753

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.96  E-value=2.6e-28  Score=185.40  Aligned_cols=135  Identities=38%  Similarity=0.667  Sum_probs=124.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeec-CCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRV-KEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~-d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++++.|.+.|..+|||+|||+++++++|.+++.||. |++++++|.+|+|.+||+.+.+++.|.++++++.++...++
T Consensus       335 y~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~  414 (471)
T PRK07787        335 YLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQ  414 (471)
T ss_pred             hcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCe
Confidence            89999999999987999999999999999999999996 89999999999999999999999999999999998887778


Q ss_pred             eeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           80 VPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        80 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      .++++++...  ..+.+++.+.+++.++.++.|..++++++||+|++||++|++|+++
T Consensus       415 ~~~a~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        415 RIVAYVVGAD--DVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             EEEEEEEeCC--CCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence            8888887733  3567889999999999999999999999999999999999999753

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.96  E-value=4.5e-28  Score=185.74  Aligned_cols=140  Identities=30%  Similarity=0.349  Sum_probs=129.1

Q ss_pred             CCCChhhhhcccC---CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977            1 YLNDPEATAATID---VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~~---~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~   77 (145)
                      ||+++..|++.|.   +.+||+|||++++|++|++++.||.|++++++|.+|+|.+||+.+.+++.|.++++++.++...
T Consensus       390 y~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~  469 (533)
T PRK07798        390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERW  469 (533)
T ss_pred             ccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCccc
Confidence            8999999999883   3469999999999999999999999999999999999999999999999999999999888777


Q ss_pred             CceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           78 GEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      ++.+.+++++..+...+.+++.+.+++.++.+.+|..+++++++|+|++||++|+.|+++..+
T Consensus       470 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        470 GQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             CceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhcc
Confidence            788888888777666788999999999999999999999999999999999999999998765

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=5e-28  Score=187.28  Aligned_cols=141  Identities=38%  Similarity=0.621  Sum_probs=131.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...|. +|||+|||+++++++|.++++||.||+|+++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       417 Y~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  495 (563)
T PRK06710        417 YWNKPEETAAVLQ-DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGET  495 (563)
T ss_pred             hhCChHHHhhhcc-cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCce
Confidence            8999999999885 899999999999999999999999999999999999999999999999999999999998877888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++....+...+.+++.+.+.++++.++.|..+.++++||+|++||++|++|++++...-
T Consensus       496 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~  557 (563)
T PRK06710        496 VKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKN  557 (563)
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcC
Confidence            88888887776667889999999999999999999999999999999999999999886544

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.96  E-value=5.2e-28  Score=184.23  Aligned_cols=137  Identities=29%  Similarity=0.499  Sum_probs=125.5

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..+...+ .+|||+|||++++|++|++++.||++|+|+++|.+|+|.+||+.+.++|.|.++++++..+...++.
T Consensus       347 y~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  425 (487)
T PRK07638        347 YIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEK  425 (487)
T ss_pred             ecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCe
Confidence            899998887776 4899999999999999999999999999999999999999999999999999999999998877778


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++..    ..+..++.+.+++.++.+++|..+++++++|+|++||++|++|++++.+..
T Consensus       426 ~~~~v~~----~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~  483 (487)
T PRK07638        426 PVAIIKG----SATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQE  483 (487)
T ss_pred             eEEEEEC----CCCHHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhccc
Confidence            7777753    356788999999999999999999999999999999999999999987754

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.96  E-value=3.3e-28  Score=186.99  Aligned_cols=134  Identities=34%  Similarity=0.581  Sum_probs=124.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|.+.|..+|||+|||+++++++|++++.||.+|+|+++|.+|+|.+||+.+.++|.|.++++++.++...++.
T Consensus       393 Y~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~  472 (527)
T TIGR02275       393 YYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEK  472 (527)
T ss_pred             hcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccE
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLI  135 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~  135 (145)
                      +++++++... ..+..++.+++++. ++.+++|..+.++++||+|++||++|+.|+
T Consensus       473 ~~a~vv~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       473 SCAFIVVRDP-ALKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             EEEEEEECCC-CCCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            8888877654 46778999999985 999999999999999999999999999863

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.96  E-value=2.9e-28  Score=189.94  Aligned_cols=139  Identities=24%  Similarity=0.291  Sum_probs=120.1

Q ss_pred             CChhhhhccc------CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC
Q 038977            3 NDPEATAATI------DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV   76 (145)
Q Consensus         3 ~~~~~t~~~~------~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~   76 (145)
                      +++..|...|      .+++||+|||+|+++++|.+++.||.||+||++|.+|+|.+||+.+.++|+|.++++++.+...
T Consensus       420 ~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~  499 (600)
T PRK08279        420 TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPG  499 (600)
T ss_pred             CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCC
Confidence            7788887765      2468999999999999999999999999999999999999999999999999999999887553


Q ss_pred             -CCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           77 -AGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        77 -~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                       .+...+++++..++...+..++.+.++++|+.+++|..+++++++|+|.+||++|++|++++.+.
T Consensus       500 ~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  565 (600)
T PRK08279        500 TDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP  565 (600)
T ss_pred             CCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence             23444455555545556778999999999999999999999999999999999999999876554

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.96  E-value=8.9e-28  Score=185.43  Aligned_cols=139  Identities=35%  Similarity=0.519  Sum_probs=127.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|+..  .+|||+|||+++++++|++++.||.+++++++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       406 Y~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~  483 (547)
T PRK13295        406 YLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGER  483 (547)
T ss_pred             ccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcE
Confidence            89999988776  4789999999999999999999999999999999999999999999999999999999988878888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++++..+...+..++.+.+.+ .++.+++|..++++++||+|.+||++|.+|++++.+.
T Consensus       484 ~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~  545 (547)
T PRK13295        484 ACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGE  545 (547)
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhcC
Confidence            888888877656667889999986 7999999999999999999999999999999988653

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.96  E-value=5.3e-28  Score=186.57  Aligned_cols=139  Identities=26%  Similarity=0.386  Sum_probs=120.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|.+.|. +|||+|||++++|++|++++.||.+++|+++|.+|+|.+||..+..+|.|.++++++.++...++.
T Consensus       388 Y~~~~~~t~~~~~-~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~  466 (540)
T PRK05857        388 YWNNPERTAEVLI-DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGAL  466 (540)
T ss_pred             hhCCccchhhhcC-CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccc
Confidence            8999999999985 899999999999999999999999999999999999999999999999999999999988777777


Q ss_pred             eEEEEEeCCCCccC-H----HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELT-E----EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~-~----~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++......... .    +.+.+.+++.++.+++|..+.+++++|+|++||++|+.|++.+..
T Consensus       467 ~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~  531 (540)
T PRK05857        467 VGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA  531 (540)
T ss_pred             eEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence            77776655432211 2    234455567789999999999999999999999999999988764

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=3.5e-28  Score=190.54  Aligned_cols=140  Identities=27%  Similarity=0.377  Sum_probs=121.1

Q ss_pred             CCCChhhhhcccC-----------------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CC
Q 038977            1 YLNDPEATAATID-----------------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS-HP   62 (145)
Q Consensus         1 Y~~~~~~t~~~~~-----------------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~-~~   62 (145)
                      ||++++.|++.|.                 .+|||+|||+|+++ +|.++++||.||+||++|.+|+|.+||..+.+ +|
T Consensus       432 Y~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p  510 (631)
T PRK07769        432 YWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATK  510 (631)
T ss_pred             ccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccc
Confidence            9999999999884                 24899999999994 99999999999999999999999999999986 79


Q ss_pred             Ccce--EEEEeecC-------------------CCCCceeEEEEEeCCCC-ccCHHHHHHHHHhcccc-cc-CceEEEEe
Q 038977           63 SIAD--ATVVPQKD-------------------EVAGEVPVAFVVRSNGF-ELTEEAIKEYIAKQVVF-YK-RLHKVHFV  118 (145)
Q Consensus        63 ~v~~--~~~~~~~~-------------------~~~~~~~~~~v~~~~~~-~~~~~~l~~~l~~~l~~-~~-~p~~~~~v  118 (145)
                      .|.+  +.+++.++                   ...++.+++++++..+. ..+..++.++++++++. +. .|..+.++
T Consensus       511 ~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v  590 (631)
T PRK07769        511 ALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLV  590 (631)
T ss_pred             cccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEE
Confidence            9987  88888887                   44677888888877653 45678999999999996 55 47788888


Q ss_pred             c--cCCCCCCCcccHHHHHHHHHcc
Q 038977          119 H--AIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus       119 ~--~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +  .||+|++||++|++|++.+.++
T Consensus       591 ~~~~lP~t~~GKi~r~~l~~~~~~~  615 (631)
T PRK07769        591 PAGSIPRTSSGKIARRACRAAYLDG  615 (631)
T ss_pred             CCCccccCCCcHHHHHHHHHHHHcC
Confidence            6  6999999999999999988654

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=5.7e-28  Score=184.59  Aligned_cols=135  Identities=32%  Similarity=0.512  Sum_probs=122.1

Q ss_pred             CCCChhhhhcccC--CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATID--VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~~--~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++|+.|++.|.  .++|++|||++++|++|.+++.||.|++++++|.+|+|.+||+.+.+++.|.++++++.++...+
T Consensus       362 y~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~  441 (501)
T PRK13390        362 YLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMG  441 (501)
T ss_pred             ccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccC
Confidence            8999999998874  36899999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ceeEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHH
Q 038977           79 EVPVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLI  135 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~  135 (145)
                      +.+++++.+..+....   .+++.+.++.+++.++.|..++++++||+|++||++|++|+
T Consensus       442 e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        442 EQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             ceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence            8888888776553322   35788999999999999999999999999999999999874

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=7.9e-28  Score=182.12  Aligned_cols=138  Identities=24%  Similarity=0.321  Sum_probs=125.8

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+.... .+|||+|||++++| +|.+++.||+||+|+++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       318 Y~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~  395 (458)
T PRK09029        318 YWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQR  395 (458)
T ss_pred             eecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCce
Confidence            888888876554 58999999999999 9999999999999999999999999999999999999999999999888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++....  ..+..++.+.++++++.++.|..+++++.+|+|.+||++|+.|++++.+..
T Consensus       396 ~~a~v~~~~--~~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~  455 (458)
T PRK09029        396 PVAVVESDS--EAAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQL  455 (458)
T ss_pred             EEEEEEcCc--ccCHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhcc
Confidence            888887653  356789999999999999999999999999999999999999999987653

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=9.8e-28  Score=183.24  Aligned_cols=136  Identities=44%  Similarity=0.750  Sum_probs=126.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..+...+..+|||+|||+++++++|.++++||.||+++++|.+++|.+||+.+.++++|.++++++.++...++.
T Consensus       377 y~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~  456 (513)
T PRK07656        377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEV  456 (513)
T ss_pred             hcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCce
Confidence            89999999999977899999999999999999999999999999999999999999999999999999999988877888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      +++++....+...+..++.+++++.++.+++|..+.+++++|+|++||++|++|++
T Consensus       457 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        457 GKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            88888877656677789999999999999999999999999999999999999875

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.96  E-value=2.6e-28  Score=204.44  Aligned_cols=136  Identities=26%  Similarity=0.413  Sum_probs=119.5

Q ss_pred             CCCChhhhhcccC----------------------------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChH
Q 038977            1 YLNDPEATAATID----------------------------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPA   52 (145)
Q Consensus         1 Y~~~~~~t~~~~~----------------------------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~   52 (145)
                      |||+|+.|+++|.                            .++||+|||++++++||.++++||.||+||++|.+|+|.
T Consensus       635 Y~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~  714 (1389)
T TIGR03443       635 YLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELG  714 (1389)
T ss_pred             cCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHH
Confidence            9999999999883                            258999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCC-c-------------------------cCHHHHHHHHHhcc
Q 038977           53 EIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGF-E-------------------------LTEEAIKEYIAKQV  106 (145)
Q Consensus        53 ~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-------------------------~~~~~l~~~l~~~l  106 (145)
                      +||..|.++|.|.+++++...+...+..+++++++.... .                         ....++.+.++++|
T Consensus       715 eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L  794 (1389)
T TIGR03443       715 EIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKL  794 (1389)
T ss_pred             HHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhC
Confidence            999999999999999988887776677888887765211 0                         01357888999999


Q ss_pred             ccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977          107 VFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus       107 ~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      +.|++|..+++++.||+|++||++|++|..
T Consensus       795 p~y~~P~~~~~~~~lP~t~~GKidr~~L~~  824 (1389)
T TIGR03443       795 PSYAIPTVIVPLKKLPLNPNGKVDKPALPF  824 (1389)
T ss_pred             CcccCCceEEEcccCCCCCCccccHhhcCC
Confidence            999999999999999999999999999863

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.95  E-value=2.4e-28  Score=192.14  Aligned_cols=139  Identities=27%  Similarity=0.331  Sum_probs=116.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|+.|++.|..+|||+|||+|++|+||.++++||.+|+||+ +|++|+|.+||+.|.++|.|.++++++.   ..++
T Consensus       472 Y~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~  548 (651)
T PLN02736        472 YYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNS  548 (651)
T ss_pred             cccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCc
Confidence            99999999999987999999999999999999999999999997 7999999999999999999999999983   2456


Q ss_pred             eeEEEEEeCCCC--------ccCHH---------HHH----HHH-----HhccccccCceEEEEeccCC------CCCCC
Q 038977           80 VPVAFVVRSNGF--------ELTEE---------AIK----EYI-----AKQVVFYKRLHKVHFVHAIP------KSPSG  127 (145)
Q Consensus        80 ~~~~~v~~~~~~--------~~~~~---------~l~----~~l-----~~~l~~~~~p~~~~~v~~~p------~t~~g  127 (145)
                      .+++++++....        ..+..         ++.    +.+     ++.|+.+.+|+.|.++++.+      +|++|
T Consensus       549 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~  628 (651)
T PLN02736        549 SLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTF  628 (651)
T ss_pred             eeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhh
Confidence            788888875421        11111         111    111     23599999999999998876      79999


Q ss_pred             cccHHHHHHHHHccC
Q 038977          128 KILRKDLIAKLASSM  142 (145)
Q Consensus       128 K~~r~~l~~~~~~~~  142 (145)
                      |++|+.+++.|.+.+
T Consensus       629 Ki~R~~i~~~~~~~i  643 (651)
T PLN02736        629 KVKRPQAKAYFAKAI  643 (651)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999999999998765

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.95  E-value=1.8e-27  Score=184.31  Aligned_cols=136  Identities=39%  Similarity=0.632  Sum_probs=125.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|..+|||+|||+++++++|.+++.||.+++++++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       426 Y~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  505 (562)
T PRK12492        426 YWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEA  505 (562)
T ss_pred             cccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCce
Confidence            89999999999977899999999999999999999999999999999999999999999999999999999988777777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      +++++..... ..+.+++.+.+.+.++.+.+|..+.+++++|+|++||++|++|++.
T Consensus       506 ~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        506 VKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             EEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            7777776543 3566889999999999999999999999999999999999999865

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=2e-27  Score=181.59  Aligned_cols=141  Identities=32%  Similarity=0.594  Sum_probs=129.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...+..+|||+|||+++++++|.+++.||.|++++++|.+|++.+||..+.++++|.++.+++..+...++.
T Consensus       354 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~  433 (502)
T PRK08276        354 YHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGER  433 (502)
T ss_pred             hcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCce
Confidence            89999999999986799999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             eEEEEEeCCCCccCH---HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++++..+.....   +++.+.+++.++.++.|..+++++++|+|++||++|++|++.+...
T Consensus       434 ~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~  497 (502)
T PRK08276        434 VKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG  497 (502)
T ss_pred             EEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence            999988876544332   4788999999999999999999999999999999999999997654

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.95  E-value=2.2e-27  Score=182.18  Aligned_cols=140  Identities=34%  Similarity=0.504  Sum_probs=129.8

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..+...|. +|||+|||+++++++|.+++.||.+++++++|.+|+|.+||+.+.++++|.++++++.++...++.
T Consensus       379 y~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  457 (524)
T PRK06188        379 YWNRPEETAEAFR-DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEA  457 (524)
T ss_pred             hcCChHHhhhhhc-CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCce
Confidence            8899999999985 899999999999999999999999999999999999999999999999999999999888777788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++.+........+++.+.+.+.++.++.|..+++++.+|+|++||++|++|++.+.++
T Consensus       458 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~  518 (524)
T PRK06188        458 VTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEG  518 (524)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhh
Confidence            8888888766666778999999999999999999999999999999999999999998654

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.95  E-value=3.5e-27  Score=180.52  Aligned_cols=139  Identities=31%  Similarity=0.517  Sum_probs=128.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..++..+ .++||+|||+++++++|.+++.||.||+++++|.+|+|.+||+.|.+++.|.++++++.++...++.
T Consensus       365 y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  443 (509)
T PRK12406        365 YHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEA  443 (509)
T ss_pred             ccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCce
Confidence            788898888776 5899999999999999999999999999999999999999999999999999999999988877778


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++.+......+.+++.+.+++.++.+++|..+.+++++|+|++||++|++|++.+..
T Consensus       444 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        444 LMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHh
Confidence            888888776655677899999999999999999999999999999999999999988754

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=2.4e-27  Score=182.79  Aligned_cols=137  Identities=28%  Similarity=0.457  Sum_probs=123.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++.   ..+. +|||+|||++++|++|.+++.||.+|+++++|.+|+|.+||+.+..+|.|.++++++.++...++.
T Consensus       398 y~~~~~---~~~~-~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~  473 (539)
T PRK07008        398 YFRGDA---SPLV-DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDER  473 (539)
T ss_pred             hcCChh---hhhc-CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccc
Confidence            777773   2343 789999999999999999999999999999999999999999999999999999999998877788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++....+...+.+++.++++++++.++.|..+++++.+|+|++||++|++|++.+.+.
T Consensus       474 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~  534 (539)
T PRK07008        474 PLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDY  534 (539)
T ss_pred             eEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence            8888877766666778999999999999999999999999999999999999999988754

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.95  E-value=2.1e-27  Score=183.66  Aligned_cols=136  Identities=37%  Similarity=0.595  Sum_probs=124.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+++.|..+|||+|||++++|++|.+++.||.+|+++++|.+|+|.+||+.+..++.|.++++++.++...++.
T Consensus       422 y~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~  501 (560)
T PRK08751        422 YWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEI  501 (560)
T ss_pred             hcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCce
Confidence            89999999999988899999999999999999999999999999999999999999999999999999999988777776


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      +.+++... ....+..++.+.+.+.++.++.|..+.+++.||+|++||++|++|++.
T Consensus       502 ~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        502 VKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDA  557 (560)
T ss_pred             EEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence            66666544 344567889999999999999999999999999999999999999876

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=3.9e-27  Score=181.68  Aligned_cols=141  Identities=36%  Similarity=0.606  Sum_probs=128.2

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.++..|. +|||+|||+++++++|.+++.||.+++++++|.+|+|.+||+.+.+++.|.++++++......++.
T Consensus       385 y~~~~~~~~~~f~-~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~  463 (542)
T PRK07786        385 YWNNPEATAEAFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEV  463 (542)
T ss_pred             hcCCHHHHHHHhh-CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCce
Confidence            8999999999995 899999999999999999999999999999999999999999999999999999998887777777


Q ss_pred             eEEEEEeCCCC-ccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGF-ELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++...... .....++.+.+++.++.++.|..+++++.||+|++||++|++|++++.+.-
T Consensus       464 ~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~  526 (542)
T PRK07786        464 PVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACV  526 (542)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhh
Confidence            77777766543 245688999999999999999999999999999999999999999987653

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.95  E-value=3e-27  Score=180.39  Aligned_cols=138  Identities=29%  Similarity=0.395  Sum_probs=119.1

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec-CCC
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK-DEV   76 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~-~~~   76 (145)
                      ||++++.|...|   .+.+||+|||++++|++ .+++.||.+|+|+++|.+|+|.+||+.+.+++.|.++++++.. ...
T Consensus       356 y~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~  434 (502)
T TIGR01734       356 YLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDH  434 (502)
T ss_pred             ccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCC
Confidence            899999888876   34569999999999877 9999999999999999999999999999999999999999865 444


Q ss_pred             CCceeEEEEEeCCCCccC----HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977           77 AGEVPVAFVVRSNGFELT----EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      ..+.+++++.........    ..++.+.+++.++.+..|..+++++++|+|++||++|++|++++.
T Consensus       435 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       435 KVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             CceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence            556777777765432222    267889999999999999999999999999999999999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.95  E-value=3e-27  Score=182.36  Aligned_cols=142  Identities=35%  Similarity=0.517  Sum_probs=129.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...|..+|||+|||+++++++|.++++||.+|+|+++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       395 y~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~  474 (547)
T PRK06087        395 YLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGER  474 (547)
T ss_pred             ccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCce
Confidence            89999999999977899999999999999999999999999999999999999999999999999999999988877888


Q ss_pred             eEEEEEeCC-CCccCHHHHHHHHH-hccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSN-GFELTEEAIKEYIA-KQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~-~~~~~~~~l~~~l~-~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++.... ....+..++.+.+. +.++.+++|..+.++++||+|.+||++|+.|++++.+.+
T Consensus       475 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~  538 (547)
T PRK06087        475 SCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL  538 (547)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence            888888765 33455678888775 579999999999999999999999999999999998765

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.95  E-value=3.6e-27  Score=187.25  Aligned_cols=124  Identities=26%  Similarity=0.283  Sum_probs=110.6

Q ss_pred             CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCcc
Q 038977           14 VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFEL   93 (145)
Q Consensus        14 ~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   93 (145)
                      .+|||+|||++++|++|++++.||++|+|+++|++|+|.+||+.+.+++.+.++++++.++...++.+++++.   +...
T Consensus       589 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~  665 (718)
T PRK08043        589 ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSEL  665 (718)
T ss_pred             cCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---Cccc
Confidence            4799999999999999999999999999999999999999999999998888888888887777777776653   2335


Q ss_pred             CHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           94 TEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        94 ~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +.+++.++++++ ++.+++|..+.+++++|+|++||++|++|++++.+
T Consensus       666 ~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        666 TREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             CHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence            667899999887 99999999999999999999999999999988765

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=6.1e-27  Score=179.37  Aligned_cols=140  Identities=31%  Similarity=0.493  Sum_probs=126.7

Q ss_pred             CCCChhhhhcccCCC-CeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVE-GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~-~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++++.+...+..+ +||+|||+++++++|.+++.||.+++++++|.+|+|.+||+.+.+++.|.++++++.++...++
T Consensus       366 y~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~  445 (511)
T PRK13391        366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE  445 (511)
T ss_pred             EcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCc
Confidence            899999999988544 9999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eeEEEEEeCCCCcc---CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           80 VPVAFVVRSNGFEL---TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        80 ~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      .+++++....+...   ...++.++++++++.++.|..+.+++++|+|++||++|+.|++.+..
T Consensus       446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        446 EVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             eeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence            88888876654332   24789999999999999999999999999999999999999998864

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=5e-27  Score=178.42  Aligned_cols=137  Identities=42%  Similarity=0.719  Sum_probs=125.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...|. +|||+|||+++++++|.+++.||++|+++++|.+|+|.+||+.+..++.|.++++++..+...+..
T Consensus       346 y~~~~~~~~~~~~-~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~  424 (483)
T PRK03640        346 YLNREDATRETFQ-DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQV  424 (483)
T ss_pred             hcCCHHHHHHHHh-cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCc
Confidence            8999999999985 899999999999999999999999999999999999999999999999999999998888776777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      .++++....  ..+..++.+.+++.++.+.+|..+++++.+|+|++||++|+.|++++.+
T Consensus       425 ~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        425 PVAFVVKSG--EVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             eEEEEEeCC--CCCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence            777666443  4667889999999999999999999999999999999999999998864

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.95  E-value=6.1e-27  Score=180.51  Aligned_cols=138  Identities=36%  Similarity=0.506  Sum_probs=126.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...|. +|||+|||++++|++|.++++||.|++++++|.+|+|.+||..|.+++.|.++++++.++...++.
T Consensus       402 Y~~~~~~~~~~~~-~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~  480 (545)
T PRK08162        402 YLKNPKATEEAFA-GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEV  480 (545)
T ss_pred             hcCChhhhHHHhh-CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCce
Confidence            8999999999995 899999999999999999999999999999999999999999999999999999999988777788


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++.+..+...+..++.+.+++.++.+.+|..+.+ .++|+|++||++|+.|++.+.+
T Consensus       481 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~  539 (545)
T PRK08162        481 PCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKS  539 (545)
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhh
Confidence            8888888776666788999999999999999998865 6799999999999999988654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.95  E-value=4.2e-27  Score=181.67  Aligned_cols=134  Identities=22%  Similarity=0.236  Sum_probs=110.5

Q ss_pred             CCCChhhhhccc-CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcce------EEEEeec
Q 038977            1 YLNDPEATAATI-DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIAD------ATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~-~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~------~~~~~~~   73 (145)
                      ||++|+.+.... +++|||+|||++++|++|.+++.||.+|+||++|.+|+|.+||+.|.++|.|.+      +++++.+
T Consensus       394 Y~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~  473 (539)
T PRK06334        394 YLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLP  473 (539)
T ss_pred             ccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCC
Confidence            899998665332 457899999999999999999999999999999999999999999999999987      6666666


Q ss_pred             CCCCCceeEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           74 DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +..  ..+++++...    .+.+++.+.+.++ ++.++.|+.+.++++||+|++||++|+.|++....
T Consensus       474 ~~~--~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        474 GEK--VRLCLFTTFP----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             CCc--eEEEEEEecc----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHH
Confidence            431  2333444322    3457788888886 78999999999999999999999999999987543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.95  E-value=8.6e-27  Score=171.40  Aligned_cols=118  Identities=22%  Similarity=0.177  Sum_probs=109.2

Q ss_pred             CCCeeecCceEEE-cCCCeEEEEeecCCeEEeCc---EEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCC
Q 038977           14 VEGLLHTGDIGYV-DHDDEVFIVDRVKEIIKFKG---FQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSN   89 (145)
Q Consensus        14 ~~~~~~TGDl~~~-~~~g~l~~~GR~d~~i~~~G---~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~   89 (145)
                      .+|||+|||+|++ |++|++++.||.+     +|   .+|+|. ||+.|.++|+|.++++++.++..+++.+++++++..
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            4899999999998 7999999999998     88   799999 999999999999999999999999999999998764


Q ss_pred             CCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           90 GFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        90 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                        ..+.+++.++++++++. ++|..+.+++++|+|++||++|+.|++.+.+
T Consensus       281 --~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~  328 (365)
T PRK09188        281 --PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMN  328 (365)
T ss_pred             --CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhc
Confidence              35678999999999999 9999999999999999999999999987643

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=6.6e-27  Score=180.86  Aligned_cols=136  Identities=39%  Similarity=0.639  Sum_probs=125.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...|..+|||+|||+++++++|.+++.||.+++++++|.+|+|.+||+.+..+++|.++++++.++...++.
T Consensus       420 Y~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~  499 (557)
T PRK07059        420 YWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEA  499 (557)
T ss_pred             hhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCee
Confidence            89999999998877999999999999999999999999999999999999999999999999999999999888877777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      +++++.... ...+.+++.+.+.+.++.+..|..+.+++.+|+|++||++|+.|+++
T Consensus       500 ~~~~v~~~~-~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        500 VKLFVVKKD-PALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             EEEEEEeCC-CCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            777777654 34566889999999999999999999999999999999999999865

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.95  E-value=2.9e-27  Score=181.90  Aligned_cols=133  Identities=23%  Similarity=0.356  Sum_probs=111.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.+     .+|||+|||+++++ +|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       386 Y~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~  459 (525)
T PRK05851        386 YLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSAR  459 (525)
T ss_pred             cccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCc
Confidence            88888643     47899999999996 7999999999999999999999999999999999999999999887777666


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccc--cCceEEEEec--cCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFY--KRLHKVHFVH--AIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~v~--~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +.+++.... ...+.+++.+.+.++++.+  +.|..+.+++  +||+|++||++|++|++.+++
T Consensus       460 ~~~~v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        460 PGLVIAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             eeEEEEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence            655554331 1234456677777777777  8999999998  899999999999999998865

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.95  E-value=3.9e-27  Score=184.17  Aligned_cols=139  Identities=28%  Similarity=0.381  Sum_probs=117.4

Q ss_pred             CCCChhhhhcccC------------------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-C
Q 038977            1 YLNDPEATAATID------------------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS-H   61 (145)
Q Consensus         1 Y~~~~~~t~~~~~------------------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~-~   61 (145)
                      ||++|+.|++.|.                  +++||+|||+|++ ++|.++++||+||+||++|.+|+|.+||+.+.+ +
T Consensus       443 Y~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~  521 (612)
T PRK12476        443 YWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQDIEATVAEAS  521 (612)
T ss_pred             ccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhc
Confidence            9999999999883                  2369999999998 599999999999999999999999999999985 7


Q ss_pred             CCcce--EEEEeecCCCCCceeEEEEEeCCCC-ccCHHHHHHHHHhccc-cccC-ceEEEEec--cCCCCCCCcccHHHH
Q 038977           62 PSIAD--ATVVPQKDEVAGEVPVAFVVRSNGF-ELTEEAIKEYIAKQVV-FYKR-LHKVHFVH--AIPKSPSGKILRKDL  134 (145)
Q Consensus        62 ~~v~~--~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~l~~~l~-~~~~-p~~~~~v~--~~p~t~~gK~~r~~l  134 (145)
                      |.|.+  +++++.++.. ++.+++++++.++. ..+.+++.+.+++.+. .+.+ |..+.+++  .||+|++||++|++|
T Consensus       522 p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L  600 (612)
T PRK12476        522 PMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRAC  600 (612)
T ss_pred             ccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHH
Confidence            99998  6777777765 67778887776653 2466788888888877 4777 57788886  699999999999999


Q ss_pred             HHHHHcc
Q 038977          135 IAKLASS  141 (145)
Q Consensus       135 ~~~~~~~  141 (145)
                      ++++.++
T Consensus       601 ~~~~~~~  607 (612)
T PRK12476        601 RAQYLDG  607 (612)
T ss_pred             HHHHHcC
Confidence            9998665

>PLN02479 acetate-CoA ligase

Probab=99.95  E-value=5.3e-27  Score=181.89  Aligned_cols=139  Identities=33%  Similarity=0.535  Sum_probs=125.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|. +|||+|||++++|++|.++++||.+|+|+++|.+|+|.+||..+..++.|.++.+++..+...++.
T Consensus       416 Y~~~~~~t~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  494 (567)
T PLN02479        416 YLKNPKANEEAFA-NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGES  494 (567)
T ss_pred             hhcCcccccchhc-CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCce
Confidence            8999999999995 899999999999999999999999999999999999999999999999999999999988877788


Q ss_pred             eEEEEEeCCCCc-----cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFE-----LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++.+..+..     ...+++.+++.++++.++.|..+.+ .++|+|++||++|+.|++.+...
T Consensus       495 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~~  559 (567)
T PLN02479        495 PCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKEM  559 (567)
T ss_pred             eEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHhh
Confidence            888888765532     2346788999999999999998776 67999999999999999887653

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=1.4e-26  Score=177.01  Aligned_cols=140  Identities=39%  Similarity=0.684  Sum_probs=130.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      |+++++.+...|. ++||+|||+++++++|.+++.||.+++++++|.+++|.+||+.+.++++|.++++++.++...++.
T Consensus       381 y~~~~~~~~~~~~-~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  459 (521)
T PRK06187        381 YWNRPEATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGER  459 (521)
T ss_pred             hcCCHHHHHHHhh-CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCce
Confidence            7888888888885 779999999999999999999999999999999999999999999999999999999888777888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++....+...+..++.+.+++.++.+..|..+++++++|+|++||++|..++++|.++
T Consensus       460 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~  520 (521)
T PRK06187        460 PVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG  520 (521)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence            8888888777667788999999999999999999999999999999999999999999875

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.95  E-value=6.8e-27  Score=180.16  Aligned_cols=133  Identities=33%  Similarity=0.532  Sum_probs=121.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.  +..+|||+|||++++|++|.++++||.+++++++|.+|+|.+||..+.+++.|.++++++.++...++.
T Consensus       404 y~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~  481 (538)
T TIGR03208       404 YLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGER  481 (538)
T ss_pred             ccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCce
Confidence            889888765  346899999999999999999999999999999999999999999999999999999999988877888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLI  135 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~  135 (145)
                      +++++.+..+...+..++.+.+.. +++.+++|..+.+++++|+|++||++|++|+
T Consensus       482 ~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       482 ACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence            888888877666777889999985 7999999999999999999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.95  E-value=6.1e-27  Score=191.10  Aligned_cols=122  Identities=20%  Similarity=0.137  Sum_probs=112.8

Q ss_pred             CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCcc
Q 038977           14 VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFEL   93 (145)
Q Consensus        14 ~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   93 (145)
                      ++|||+|||++++|+||+++|+||+|++||++|.+|+|.+||+.|.++|.|.++++++.++.. ++.+++++++.++...
T Consensus       834 ~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~  912 (994)
T PRK07868        834 ADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAI  912 (994)
T ss_pred             CCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcC
Confidence            489999999999999999999999999999999999999999999999999999999998765 5677888888777667


Q ss_pred             CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           94 TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        94 ~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      +.+++.+++.+ ++.+++|..++++++||+|++||++|++|++.
T Consensus       913 ~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~  955 (994)
T PRK07868        913 TAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAA  955 (994)
T ss_pred             CHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhc
Confidence            78899999986 89999999999999999999999999999865

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.95  E-value=1.6e-26  Score=178.24  Aligned_cols=137  Identities=29%  Similarity=0.455  Sum_probs=124.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++   +...++.+|||+|||+++++++|.+++.||.+|+++++|.+|+|.+||..+.+++.|.++++++.++...++.
T Consensus       398 y~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  474 (542)
T PRK06018        398 YYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDER  474 (542)
T ss_pred             hhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCce
Confidence            5662   2345566899999999999999999999999999999999999999999999999999999999998887888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      ..+++.+..+...+.+++.+.++++++.+..|..+.++++||+|++||++|++|++.+.+
T Consensus       475 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        475 PLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             eEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            888888877777777899999999999999999999999999999999999999999876

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=7.9e-27  Score=179.94  Aligned_cols=130  Identities=34%  Similarity=0.591  Sum_probs=118.0

Q ss_pred             hhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEE
Q 038977            5 PEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAF   84 (145)
Q Consensus         5 ~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~   84 (145)
                      ++.+.. +. +|||+|||+++++++|++++.||+||+||++|.+|+|.+||+.+.++++|.++++++.++...++.++++
T Consensus       407 ~~~~~~-~~-~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~  484 (537)
T PRK13382        407 SGSTKD-FH-DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAF  484 (537)
T ss_pred             ccchhh-cc-CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEE
Confidence            344443 32 7999999999999999999999999999999999999999999999999999999999988788888888


Q ss_pred             EEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           85 VVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        85 v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      +++..+.....+++.+.++..++.+++|..+.+++++|+|++||++|++|++
T Consensus       485 vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        485 VVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             EEECCCCCCCHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            8887766667789999999999999999999999999999999999998864

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.95  E-value=1.1e-26  Score=177.61  Aligned_cols=136  Identities=31%  Similarity=0.428  Sum_probs=124.0

Q ss_pred             CCCChhhhhcccCC-----------CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEE
Q 038977            1 YLNDPEATAATIDV-----------EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATV   69 (145)
Q Consensus         1 Y~~~~~~t~~~~~~-----------~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~   69 (145)
                      ||++++.|...|..           ++||+|||+++++++|.+++.||.+|+++++|.+|+|.+||+.+.+++.|.++.+
T Consensus       368 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v  447 (515)
T TIGR03098       368 YWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVA  447 (515)
T ss_pred             ccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEE
Confidence            89999988777632           3489999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           70 VPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      ++.++...++.++++++.......+..++.+.+.++++.+++|..+++++.||+|.+||++|++|++
T Consensus       448 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       448 FGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             EeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            9999888888888888776666667789999999999999999999999999999999999999874

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.94  E-value=2.5e-26  Score=182.61  Aligned_cols=128  Identities=22%  Similarity=0.252  Sum_probs=110.7

Q ss_pred             CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHh-cCCCcceEEEEeecCCCCC-ceeEEEEEeC--CC
Q 038977           15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL-SHPSIADATVVPQKDEVAG-EVPVAFVVRS--NG   90 (145)
Q Consensus        15 ~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~--~~   90 (145)
                      ++||+|||++++|++|.++++||+||+||++|.+|+|.+||+++. .+|.|.++.+++.++...+ +.+++++++.  .+
T Consensus       588 ~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g  667 (728)
T PLN03052        588 KILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPG  667 (728)
T ss_pred             CEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCC
Confidence            349999999999999999999999999999999999999999995 7899999999999887665 7888888876  44


Q ss_pred             CccCHHHHH----HHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           91 FELTEEAIK----EYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        91 ~~~~~~~l~----~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ...+.++|.    +.+++.++++.+|..++++++||+|++||++|+.|++.+.+..
T Consensus       668 ~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~~  723 (728)
T PLN03052        668 SNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQEL  723 (728)
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhhh
Confidence            444444444    4566778889999999999999999999999999999887654

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.94  E-value=3.9e-26  Score=174.06  Aligned_cols=138  Identities=33%  Similarity=0.488  Sum_probs=121.0

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~   77 (145)
                      ||++++.|...|   .+.+||+|||++++ ++|.+++.||.+|+++++|.+|+|.+||+.+..+|.|.++++++.+....
T Consensus       358 y~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  436 (503)
T PRK04813        358 YLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHK  436 (503)
T ss_pred             cCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCC
Confidence            899999999887   33469999999999 99999999999999999999999999999999999999999998776666


Q ss_pred             CceeEEEEEeCCCCcc----CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977           78 GEVPVAFVVRSNGFEL----TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        78 ~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      ++.+++++.+..+...    ...++.+.+.+.++.+..|..+++++++|+|++||++|+.|++++.
T Consensus       437 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        437 VQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             ccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence            6778887776653211    1246888999999999999999999999999999999999999875

>PRK12316 peptide synthase; Provisional

Probab=99.94  E-value=6.5e-27  Score=210.78  Aligned_cols=136  Identities=32%  Similarity=0.466  Sum_probs=125.6

Q ss_pred             CCCChhhhhcccC-------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATID-------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~-------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~   73 (145)
                      |||+|+.|+++|.       +++||+|||++++++||.++++||+|++||++|.+|+|.+||..|.++|+|.++++++.+
T Consensus      2359 Y~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~ 2438 (5163)
T PRK12316       2359 YLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQD 2438 (5163)
T ss_pred             ccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEe
Confidence            9999999999983       346999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           74 DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      +. .++.++++++...+......++.+.+.+.|+.+++|..+++++.+|+|++||++|++|.+.
T Consensus      2439 ~~-~~~~l~a~v~~~~~~~~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~ 2501 (5163)
T PRK12316       2439 GA-SGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKP 2501 (5163)
T ss_pred             cC-CCeEEEEEEEecCCCccCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCC
Confidence            65 6678889988877766778899999999999999999999999999999999999999764

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.94  E-value=2.1e-26  Score=177.59  Aligned_cols=134  Identities=34%  Similarity=0.572  Sum_probs=123.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.+.+.|. ++||+|||+++++++|+++++||.|++++++|.+|+|.+||+.+.+++.|.++++++.++...++.
T Consensus       407 y~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  485 (541)
T TIGR03205       407 YWNRPEESAEAFV-GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEA  485 (541)
T ss_pred             ccCChhhhHhhhc-cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCce
Confidence            8999999999986 889999999999999999999999999999999999999999999999999999999988877778


Q ss_pred             eEEEEEeCCCCc-cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHH
Q 038977           81 PVAFVVRSNGFE-LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLI  135 (145)
Q Consensus        81 ~~~~v~~~~~~~-~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~  135 (145)
                      +++++.+..+.. .+..++.+.+++.++.+++|..++++++||+|++||++|++|+
T Consensus       486 ~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       486 AKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             EEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence            888887765532 4678899999999999999999999999999999999998873

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.94  E-value=2e-26  Score=189.97  Aligned_cols=137  Identities=30%  Similarity=0.289  Sum_probs=121.2

Q ss_pred             CCCChhhhhcccCC---CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCC--CcceEEEEeecCC
Q 038977            1 YLNDPEATAATIDV---EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHP--SIADATVVPQKDE   75 (145)
Q Consensus         1 Y~~~~~~t~~~~~~---~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~--~v~~~~~~~~~~~   75 (145)
                      ||++|+.|++.|..   +|||+|||++++|+||.+++.||.||++|++|.+|+|.+||+.+.+++  .+.++++++.++.
T Consensus      1001 Y~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~ 1080 (1146)
T PRK08633       1001 YLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDE 1080 (1146)
T ss_pred             ccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCC
Confidence            89999999998852   399999999999999999999999999999999999999999999998  4567888998888


Q ss_pred             CCCceeEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           76 VAGEVPVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      ..++.++++++..   ..+.+++.+.+.+ .++.+++|..+++++++|+|++||++|++|++...+
T Consensus      1081 ~~g~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633       1081 KKGEKLVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred             CCCcEEEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHH
Confidence            8888888877652   3456788888875 699999999999999999999999999999987654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=4.6e-26  Score=188.13  Aligned_cols=139  Identities=20%  Similarity=0.168  Sum_probs=119.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..+......+|||+|||++++|+||.+++.||.||+||++|.+|+|.+||+.+.+++.+.++++++.++...++.
T Consensus       995 Y~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~ 1074 (1140)
T PRK06814        995 YLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGER 1074 (1140)
T ss_pred             hcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCce
Confidence            77776533222235899999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++.   ....+.+++.+++.+. ++.+++|..+.+++++|+|++||++|++|+++..+..
T Consensus      1075 ~~~~~~---~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1075 IILLTT---ASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             EEEEEc---CCCcCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhh
Confidence            666543   2335667888888864 9999999999999999999999999999999887654

>PRK12316 peptide synthase; Provisional

Probab=99.94  E-value=1.7e-26  Score=208.19  Aligned_cols=134  Identities=29%  Similarity=0.378  Sum_probs=123.2

Q ss_pred             CCCChhhhhcccC------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecC
Q 038977            1 YLNDPEATAATID------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD   74 (145)
Q Consensus         1 Y~~~~~~t~~~~~------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~   74 (145)
                      |||+|+.|++.|.      +++||+|||++++++||.++++||+|++||++|.+|+|.+||+.|.++|.|.++++++.+ 
T Consensus       865 Yl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-  943 (5163)
T PRK12316        865 YHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD-  943 (5163)
T ss_pred             hCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC-
Confidence            8999999999883      456999999999999999999999999999999999999999999999999999999886 


Q ss_pred             CCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHH
Q 038977           75 EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKL  138 (145)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~  138 (145)
                         ++.+++++++..+......++.++++++|+.+++|..+++++.+|+|++||++|++|.+..
T Consensus       944 ---~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~ 1004 (5163)
T PRK12316        944 ---GKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPE 1004 (5163)
T ss_pred             ---CCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCcc
Confidence               4688888888776556778999999999999999999999999999999999999997653

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=8.2e-26  Score=174.89  Aligned_cols=139  Identities=38%  Similarity=0.574  Sum_probs=125.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...| .+|||+|||+++++++|.++++||.+|+++++|.+++|.+||+.+.+++.|.++++++.++...++.
T Consensus       418 y~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~  496 (560)
T PRK08974        418 YWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEA  496 (560)
T ss_pred             hcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceE
Confidence            889999999888 4899999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++.... ...+.+++.+++.+.++.++.|..+.+++++|+|++||++|+.|++...+.
T Consensus       497 ~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~  556 (560)
T PRK08974        497 VKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK  556 (560)
T ss_pred             EEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence            777766543 334567899999999999999999999999999999999999999987654

>PRK12467 peptide synthase; Provisional

Probab=99.94  E-value=1.1e-26  Score=206.91  Aligned_cols=137  Identities=29%  Similarity=0.442  Sum_probs=123.9

Q ss_pred             CCCChhhhhcccCCC-------CeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATIDVE-------GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~-------~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~   73 (145)
                      |||+|+.|+++|..+       +||+|||+|++++||.++++||+|++||++|.+|+|.+||+.|.++|+|.+++++...
T Consensus      3449 Y~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~ 3528 (3956)
T PRK12467       3449 YHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD 3528 (3956)
T ss_pred             ccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEec
Confidence            999999999999543       4799999999999999999999999999999999999999999999999999998874


Q ss_pred             CCCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHH
Q 038977           74 DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKL  138 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~  138 (145)
                      . ..++.++++++.........+++.+.++++|+.+++|..+++++.+|+|++||++|++|.+..
T Consensus      3529 ~-~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3529 G-AGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             C-CCCcEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCC
Confidence            3 456788888887765556678999999999999999999999999999999999999998654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.94  E-value=5.2e-26  Score=189.50  Aligned_cols=136  Identities=23%  Similarity=0.327  Sum_probs=118.8

Q ss_pred             CCCChhhhhcccC------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec-
Q 038977            1 YLNDPEATAATID------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK-   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~-   73 (145)
                      ||++|+.|++.|.      +++||+|||+++++++|.++++||.|++||++|.+|+|.+||..|.++|.|.+++++... 
T Consensus       816 Y~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~  895 (1296)
T PRK10252        816 YLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVI  895 (1296)
T ss_pred             hCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEec
Confidence            8999999999984      345999999999999999999999999999999999999999999999999999776542 


Q ss_pred             ---CCCCC--ceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           74 ---DEVAG--EVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        74 ---~~~~~--~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                         +...+  ..++++++...+...+..++.+.++++++.+++|..++.++.+|+|++||++|++|.+
T Consensus       896 ~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~  963 (1296)
T PRK10252        896 NQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPL  963 (1296)
T ss_pred             cccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCC
Confidence               11112  3677888776665567789999999999999999999999999999999999999865

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.94  E-value=6.5e-26  Score=170.28  Aligned_cols=131  Identities=34%  Similarity=0.591  Sum_probs=118.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...+ .+|||+|||+++++++|.+++.||.+|+++++|.+|++.+||+.+.+++.|.+++++..++...+..
T Consensus       306 y~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  384 (436)
T TIGR01923       306 YLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQV  384 (436)
T ss_pred             hCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCe
Confidence            888888887766 4899999999999999999999999999999999999999999999999999999998887766777


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL  134 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l  134 (145)
                      +.+++.+..+  .+..++.+++.+.++.+++|..++++++||+|++||++|++|
T Consensus       385 ~~~~v~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       385 PVAYIVSESD--ISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             eEEEEEECCC--CCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence            7777776653  567889999999999999999999999999999999999764

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.2e-25  Score=173.26  Aligned_cols=139  Identities=27%  Similarity=0.413  Sum_probs=119.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcc--eEEEEeecCCCCC
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIA--DATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~--~~~~~~~~~~~~~   78 (145)
                      ||++ ..+.+.+..+|||+|||++++ ++|.++++||.||+|+++|.+|+|.+||+.|.++|.|.  ++++++.++.. +
T Consensus       425 Y~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~  501 (579)
T PRK09192        425 YFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-G  501 (579)
T ss_pred             hcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-C
Confidence            8888 667777777999999999999 99999999999999999999999999999999999998  78888888765 4


Q ss_pred             ceeEEEEEeCCCCccCHHHHHHHHHhccc-cccCceEEEEec--cCCCCCCCcccHHHHHHHHHccC
Q 038977           79 EVPVAFVVRSNGFELTEEAIKEYIAKQVV-FYKRLHKVHFVH--AIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~v~--~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +.+++++........+.+++.+.+++.+. .+..|..+.++.  .||+|++||++|++|++.+..+.
T Consensus       502 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~  568 (579)
T PRK09192        502 EKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLSGA  568 (579)
T ss_pred             eeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHcCC
Confidence            46666766655444566788999988875 678888777775  89999999999999999988765

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.93  E-value=2.1e-25  Score=170.73  Aligned_cols=135  Identities=31%  Similarity=0.447  Sum_probs=121.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...|. ++||+|||+++++++|.+++.||.+|+++++|.+|+|.+||+.+.++++|.++++++..+....+.
T Consensus       370 Y~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~  448 (508)
T TIGR02262       370 YWNNRAKTRDTFQ-GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIK  448 (508)
T ss_pred             cCCCHHHhHhhhh-cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCce
Confidence            8999999999985 899999999999999999999999999999999999999999999999999999999877666677


Q ss_pred             eEEEEEeCCCCc---cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           81 PVAFVVRSNGFE---LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        81 ~~~~v~~~~~~~---~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      +.+++....+..   ....++.+.++++++.++.|..+.+++++|+|++||++|++|++
T Consensus       449 ~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~  507 (508)
T TIGR02262       449 PKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE  507 (508)
T ss_pred             eEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence            777777665442   33578899999999999999999999999999999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK12467 peptide synthase; Provisional

Probab=99.93  E-value=6.2e-26  Score=202.12  Aligned_cols=137  Identities=28%  Similarity=0.402  Sum_probs=120.8

Q ss_pred             CCCChhhhhcccC-------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATID-------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~-------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~   73 (145)
                      |||+|+.|+++|.       +.+||+|||++++++||.++++||+|++||++|.+|+|.+||..|.++|.|.++++++.+
T Consensus      1932 Yl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~ 2011 (3956)
T PRK12467       1932 YLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD 2011 (3956)
T ss_pred             ccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec
Confidence            9999999999983       346999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCCCCceeEEEEEeCCCCcc--------CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHH
Q 038977           74 DEVAGEVPVAFVVRSNGFEL--------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKL  138 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~  138 (145)
                       ...+..++++++.......        ...++.+.+++.|+.+++|..+++++.+|+|++||++|++|.+..
T Consensus      2012 -~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~ 2083 (3956)
T PRK12467       2012 -GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPD 2083 (3956)
T ss_pred             -CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCCc
Confidence             4455678888876543221        346799999999999999999999999999999999999987643

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.93  E-value=1.9e-25  Score=176.08  Aligned_cols=138  Identities=25%  Similarity=0.291  Sum_probs=113.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|+.|+++|. +|||+|||+|++|++|.++++||+||+||+ +|++|+|.+||+.+.++|.|.++++++.+.   ++
T Consensus       479 Y~~~pe~T~~~f~-dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~  554 (660)
T PLN02861        479 YHKRQDLTEEVLI-DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ES  554 (660)
T ss_pred             ccCCHHHHHhhhh-ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cc
Confidence            9999999999995 899999999999999999999999999997 799999999999999999999999998763   34


Q ss_pred             eeEEEEEeCCCC----------ccCH----------HHHHHHHHh-----ccccccCceEEEEec-cC-----CCCCCCc
Q 038977           80 VPVAFVVRSNGF----------ELTE----------EAIKEYIAK-----QVVFYKRLHKVHFVH-AI-----PKSPSGK  128 (145)
Q Consensus        80 ~~~~~v~~~~~~----------~~~~----------~~l~~~l~~-----~l~~~~~p~~~~~v~-~~-----p~t~~gK  128 (145)
                      .+++++++....          ..+.          ..+.+.+++     .++.+..++.+.+.+ .+     ++|+++|
T Consensus       555 ~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K  634 (660)
T PLN02861        555 FLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFK  634 (660)
T ss_pred             eeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHh
Confidence            677777764320          0011          123344433     488899999888864 45     7999999


Q ss_pred             ccHHHHHHHHHccC
Q 038977          129 ILRKDLIAKLASSM  142 (145)
Q Consensus       129 ~~r~~l~~~~~~~~  142 (145)
                      ++|..+.+.|.+.|
T Consensus       635 ~~R~~i~~~y~~~I  648 (660)
T PLN02861        635 LKRPQLLKYYKDCI  648 (660)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999998765

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=5.6e-25  Score=168.80  Aligned_cols=122  Identities=35%  Similarity=0.646  Sum_probs=113.6

Q ss_pred             CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCcc
Q 038977           14 VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFEL   93 (145)
Q Consensus        14 ~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   93 (145)
                      .+|||+|||++++|++|++++.||.+++|+++|.+|+|.+||..|.+++.|.++++++.++...++.+.+++.+......
T Consensus       394 ~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~  473 (516)
T PRK13383        394 VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV  473 (516)
T ss_pred             ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC
Confidence            37999999999999999999999999999999999999999999999999999999999888888888888888766666


Q ss_pred             CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHH
Q 038977           94 TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLI  135 (145)
Q Consensus        94 ~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~  135 (145)
                      +..++.+.+.++++.+..|..+.++++||+|++||++|++|+
T Consensus       474 ~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        474 DAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             CHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence            778999999999999999999999999999999999999874

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.93  E-value=1.8e-25  Score=176.34  Aligned_cols=138  Identities=23%  Similarity=0.274  Sum_probs=113.5

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|+.|+++|. +|||+|||+|++|++|.|+|+||++|+||+ +|++|+|.+||+.+.++|.|.++++++....   .
T Consensus       482 Y~~~pe~T~~~f~-dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~  557 (666)
T PLN02614        482 YYKREDLTKEVLI-DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---S  557 (666)
T ss_pred             ccCCHHHhhhhhc-cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---c
Confidence            9999999999995 899999999999999999999999999997 7999999999999999999999999998632   2


Q ss_pred             eeEEEEEeCCCC----------ccC----------HHHHHHHH-----HhccccccCceEEEEecc------CCCCCCCc
Q 038977           80 VPVAFVVRSNGF----------ELT----------EEAIKEYI-----AKQVVFYKRLHKVHFVHA------IPKSPSGK  128 (145)
Q Consensus        80 ~~~~~v~~~~~~----------~~~----------~~~l~~~l-----~~~l~~~~~p~~~~~v~~------~p~t~~gK  128 (145)
                      .+++++++....          ..+          .+.+.+.+     ++.|+.+.+++.+.++++      -.+|+++|
T Consensus       558 ~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K  637 (666)
T PLN02614        558 FLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFK  637 (666)
T ss_pred             eEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhh
Confidence            577777765321          001          11222322     356999999999998853      35899999


Q ss_pred             ccHHHHHHHHHccC
Q 038977          129 ILRKDLIAKLASSM  142 (145)
Q Consensus       129 ~~r~~l~~~~~~~~  142 (145)
                      ++|..+.+.|.+.|
T Consensus       638 ~kR~~i~~~y~~~i  651 (666)
T PLN02614        638 KKRPQLLKYYQSVI  651 (666)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999998765

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.93  E-value=5.5e-25  Score=170.86  Aligned_cols=139  Identities=25%  Similarity=0.390  Sum_probs=111.0

Q ss_pred             CCCChhhhhcccC-----------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEE
Q 038977            1 YLNDPEATAATID-----------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATV   69 (145)
Q Consensus         1 Y~~~~~~t~~~~~-----------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~   69 (145)
                      ||++|+.|++.|.           .+|||+|||+++++ +|+++++||++|+|+++|.+|+|.+||+.+.+++.+. +.+
T Consensus       411 Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v  488 (578)
T PRK05850        411 YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAA  488 (578)
T ss_pred             ccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEE
Confidence            8999999999984           25799999999997 8999999999999999999999999999999998854 667


Q ss_pred             EeecCCCCCceeEEEEEeCCCCccCH------HHHHHHHHhccccc--cCceEEEEe--ccCCCCCCCcccHHHHHHHHH
Q 038977           70 VPQKDEVAGEVPVAFVVRSNGFELTE------EAIKEYIAKQVVFY--KRLHKVHFV--HAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~l~~~l~~~--~~p~~~~~v--~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      ++.++. .++.+++++.+..+...+.      ..+.+.+.+.+...  ..|..+.++  +.||+|++||++|++|++.+.
T Consensus       489 ~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~  567 (578)
T PRK05850        489 ISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYR  567 (578)
T ss_pred             EEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHH
Confidence            777765 6678888888776543322      34555555544432  346666666  489999999999999999987


Q ss_pred             ccC
Q 038977          140 SSM  142 (145)
Q Consensus       140 ~~~  142 (145)
                      +..
T Consensus       568 ~~~  570 (578)
T PRK05850        568 QDE  570 (578)
T ss_pred             cCC
Confidence            653

>PRK05691 peptide synthase; Validated

Probab=99.93  E-value=3.1e-25  Score=198.70  Aligned_cols=136  Identities=30%  Similarity=0.453  Sum_probs=122.1

Q ss_pred             CCCChhhhhcccC-------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATID-------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~-------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~   73 (145)
                      |||+|+.|.+.|.       +.+||+|||+++++++|.++++||+|++||++|.+|+|.+||..|.++|.|.+++++...
T Consensus      1483 Yl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~ 1562 (4334)
T PRK05691       1483 YLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVRE 1562 (4334)
T ss_pred             hcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEee
Confidence            8999999999983       235999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           74 DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      .. .+..+++++....+......++.+.+.+.++.+++|..++.++.+|+|++||++|++|.+.
T Consensus      1563 ~~-~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1563 GA-AGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             CC-CCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence            54 4467788887776666677899999999999999999999999999999999999998653

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.2e-24  Score=163.14  Aligned_cols=119  Identities=30%  Similarity=0.514  Sum_probs=109.2

Q ss_pred             CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCcc
Q 038977           14 VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFEL   93 (145)
Q Consensus        14 ~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   93 (145)
                      .++||+|||++++|++|.++++||.|+++|++|.+|+|.+||+.+.++++|.++++++.++...++.+.+++....  ..
T Consensus       289 ~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~  366 (414)
T PRK08308        289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EI  366 (414)
T ss_pred             CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CC
Confidence            3689999999999999999999999999999999999999999999999999999999988887888877776654  45


Q ss_pred             CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHH
Q 038977           94 TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL  134 (145)
Q Consensus        94 ~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l  134 (145)
                      +..++.++++++++.+++|..+++++.+|+|++||++|+.|
T Consensus       367 ~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~  407 (414)
T PRK08308        367 DPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL  407 (414)
T ss_pred             CHHHHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhh
Confidence            67889999999999999999999999999999999999944

>PRK05691 peptide synthase; Validated

Probab=99.93  E-value=2.7e-25  Score=199.11  Aligned_cols=136  Identities=28%  Similarity=0.371  Sum_probs=118.8

Q ss_pred             CCCChhhhhcccC-------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATID-------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~-------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~   73 (145)
                      |||+|+.|+++|.       +.+||+|||++++++||.++++||.|++||++|.+|++.+||..+.++|+|.+++++...
T Consensus      4080 Y~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~ 4159 (4334)
T PRK05691       4080 YVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQE 4159 (4334)
T ss_pred             ccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEec
Confidence            9999999999993       457999999999999999999999999999999999999999999999999998876554


Q ss_pred             CCCCCceeEEEEEeCCCCcc---CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           74 DEVAGEVPVAFVVRSNGFEL---TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                       ...++.+++++........   ...++...+++.||.|++|..++.++.+|+|++||++|++|.+.
T Consensus      4160 -~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4160 -GVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             -CCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence             3455677888776554322   23678889999999999999999999999999999999999764

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.91  E-value=1.1e-24  Score=170.56  Aligned_cols=138  Identities=21%  Similarity=0.319  Sum_probs=113.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEE----cCCCeEEEEeecCCeEEe-CcEEeC--hHHHHHHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYV----DHDDEVFIVDRVKEIIKF-KGFQVP--PAEIEALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~----~~~g~l~~~GR~d~~i~~-~G~~v~--~~~ie~~l~~~~~v~~~~~~~~~   73 (145)
                      ||++|+.|.+.|..+|||+|||+|++    |++|+++++||++|++++ +|++|+  |.++|..+..+|.|.++++++.+
T Consensus       425 Y~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~  504 (614)
T PRK08180        425 YWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHD  504 (614)
T ss_pred             hcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCC
Confidence            99999999999987999999999999    468999999999998886 798777  67888888899999999999987


Q ss_pred             CCCCCceeEEEEEeCCCC---------------ccCHHHHHHHHHhcccccc--------CceEEEEeccCCCC------
Q 038977           74 DEVAGEVPVAFVVRSNGF---------------ELTEEAIKEYIAKQVVFYK--------RLHKVHFVHAIPKS------  124 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~---------------~~~~~~l~~~l~~~l~~~~--------~p~~~~~v~~~p~t------  124 (145)
                      +.    .+.++|++..+.               ..+.+++.+++...+..++        +|+++.+++++|++      
T Consensus       505 ~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t  580 (614)
T PRK08180        505 RD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEIT  580 (614)
T ss_pred             CC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccC
Confidence            75    556676665431               1234567888877777776        89999999988875      


Q ss_pred             CCCcccHHHHHHHHHccC
Q 038977          125 PSGKILRKDLIAKLASSM  142 (145)
Q Consensus       125 ~~gK~~r~~l~~~~~~~~  142 (145)
                      ++||+.|.++.+.|++.|
T Consensus       581 ~~~~~~R~~~~~~y~~~i  598 (614)
T PRK08180        581 DKGYINQRAVLARRAALV  598 (614)
T ss_pred             ccccccHHHHHHHhHHHH
Confidence            566889999999988765

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.91  E-value=3.3e-24  Score=169.94  Aligned_cols=139  Identities=24%  Similarity=0.333  Sum_probs=111.9

Q ss_pred             CCCChhhhhccc--CCCC--eeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCC
Q 038977            1 YLNDPEATAATI--DVEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDE   75 (145)
Q Consensus         1 Y~~~~~~t~~~~--~~~~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~   75 (145)
                      ||++|+.|+++|  +.+|  ||+|||+|++|++|+++++||++|+||+ +|++|+|.+||+.|.++|.|.++++++.+..
T Consensus       516 Y~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~  595 (696)
T PLN02387        516 YFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH  595 (696)
T ss_pred             hcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc
Confidence            999999999998  3345  9999999999999999999999999998 6999999999999999999999999987633


Q ss_pred             CCCceeEEEEEeCCCC----------c-cC----------HHHHHHHH-----HhccccccCceEEEEecc------CCC
Q 038977           76 VAGEVPVAFVVRSNGF----------E-LT----------EEAIKEYI-----AKQVVFYKRLHKVHFVHA------IPK  123 (145)
Q Consensus        76 ~~~~~~~~~v~~~~~~----------~-~~----------~~~l~~~l-----~~~l~~~~~p~~~~~v~~------~p~  123 (145)
                         ..+++++++....          . .+          .+++.+.+     +..|..+.+|+.+.++++      -.+
T Consensus       596 ---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~l  672 (696)
T PLN02387        596 ---SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLV  672 (696)
T ss_pred             ---ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcC
Confidence               3567777664321          0 00          11222222     336999999999999854      247


Q ss_pred             CCCCcccHHHHHHHHHccC
Q 038977          124 SPSGKILRKDLIAKLASSM  142 (145)
Q Consensus       124 t~~gK~~r~~l~~~~~~~~  142 (145)
                      |++.|++|..+++.|.+.|
T Consensus       673 T~t~K~~R~~i~~~y~~~i  691 (696)
T PLN02387        673 TAALKLKREQIRKKFKDDL  691 (696)
T ss_pred             ChhhhhhhHHHHHHHHHHH
Confidence            9999999999999998865

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.91  E-value=6.9e-24  Score=167.28  Aligned_cols=138  Identities=24%  Similarity=0.306  Sum_probs=112.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|+.|+++|. +|||+|||+|++|++|.+++.||++|+||+ +|++|+|.+||+.+.++|.|.++++++..   .+.
T Consensus       479 Y~~~~e~t~~~~~-dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~  554 (660)
T PLN02430        479 YYKNPELTEEVMK-DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKS  554 (660)
T ss_pred             ccCChHHhhhhhh-ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---Ccc
Confidence            9999999999995 999999999999999999999999999997 79999999999999999999999999843   235


Q ss_pred             eeEEEEEeCCCC----------ccC----------HHHHHHHH-----HhccccccCceEEEEecc------CCCCCCCc
Q 038977           80 VPVAFVVRSNGF----------ELT----------EEAIKEYI-----AKQVVFYKRLHKVHFVHA------IPKSPSGK  128 (145)
Q Consensus        80 ~~~~~v~~~~~~----------~~~----------~~~l~~~l-----~~~l~~~~~p~~~~~v~~------~p~t~~gK  128 (145)
                      .+++++++....          ..+          .+.+.+.+     ++.|+.+.+++.+++.++      -.+|+++|
T Consensus       555 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K  634 (660)
T PLN02430        555 MLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLK  634 (660)
T ss_pred             eEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhh
Confidence            777777765321          000          01122222     235999999999998743      35899999


Q ss_pred             ccHHHHHHHHHccC
Q 038977          129 ILRKDLIAKLASSM  142 (145)
Q Consensus       129 ~~r~~l~~~~~~~~  142 (145)
                      ++|..+.+.|.+.|
T Consensus       635 ~~R~~i~~~y~~~i  648 (660)
T PLN02430        635 KRRNNLLKYYQVEI  648 (660)
T ss_pred             hhhHHHHHHHHHHH
Confidence            99999999988765

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.90  E-value=1.9e-23  Score=165.66  Aligned_cols=139  Identities=21%  Similarity=0.283  Sum_probs=108.7

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCcce--EEEEeecCCCC
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIK-FKGFQVPPAEIEALLLSHPSIAD--ATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~-~~G~~v~~~~ie~~l~~~~~v~~--~~~~~~~~~~~   77 (145)
                      ||++|+.|+++|..+|||+|||+|++|++|.++++||+||+|| ++|++|+|.+||+.+.++|.|.+  ++++..+..  
T Consensus       521 Y~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~--  598 (700)
T PTZ00216        521 YYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR--  598 (700)
T ss_pred             hcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC--
Confidence            9999999999998899999999999999999999999999999 79999999999999999999986  344433322  


Q ss_pred             CceeEEEEEeCCCC----------ccC----------HHHHHHHH-----HhccccccCceEEEEec------cCCCCCC
Q 038977           78 GEVPVAFVVRSNGF----------ELT----------EEAIKEYI-----AKQVVFYKRLHKVHFVH------AIPKSPS  126 (145)
Q Consensus        78 ~~~~~~~v~~~~~~----------~~~----------~~~l~~~l-----~~~l~~~~~p~~~~~v~------~~p~t~~  126 (145)
                       ..+++++++....          ..+          .+.+.+.+     +..+..+..++.++++.      .-.+|++
T Consensus       599 -~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t  677 (700)
T PTZ00216        599 -SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAA  677 (700)
T ss_pred             -ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChh
Confidence             4667777654211          000          01222222     23577888999888883      3457999


Q ss_pred             CcccHHHHHHHHHccC
Q 038977          127 GKILRKDLIAKLASSM  142 (145)
Q Consensus       127 gK~~r~~l~~~~~~~~  142 (145)
                      +|++|+.+.+.|.+.|
T Consensus       678 ~K~~R~~i~~~y~~~i  693 (700)
T PTZ00216        678 MKLKRRVIDERYADLI  693 (700)
T ss_pred             hccchHHHHHHHHHHH
Confidence            9999999999998765

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.90  E-value=4e-23  Score=164.40  Aligned_cols=139  Identities=17%  Similarity=0.246  Sum_probs=110.8

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|+.|+++|..+|||+|||+|++|++|+++++||++|+||+ +|++|+|.+||+.+.++|.|.++++++....   .
T Consensus       555 Y~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~  631 (746)
T PTZ00342        555 YFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---D  631 (746)
T ss_pred             ccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---c
Confidence            99999999999988999999999999999999999999999996 8999999999999999999999999986322   3


Q ss_pred             eeEEEEEeCCC----------------Cc-cCH---------------HHHHHH---H--HhccccccCceEEEEecc--
Q 038977           80 VPVAFVVRSNG----------------FE-LTE---------------EAIKEY---I--AKQVVFYKRLHKVHFVHA--  120 (145)
Q Consensus        80 ~~~~~v~~~~~----------------~~-~~~---------------~~l~~~---l--~~~l~~~~~p~~~~~v~~--  120 (145)
                      .+++++++...                .. .+.               +.+.+.   +  +..|..+..++.++++.+  
T Consensus       632 ~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~  711 (746)
T PTZ00342        632 GPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVW  711 (746)
T ss_pred             ccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCC
Confidence            56677665431                00 000               111111   2  236999999999988831  


Q ss_pred             ---CCCCCCCcccHHHHHHHHHccC
Q 038977          121 ---IPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus       121 ---~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                         --+||+.|++|..+.+.|...|
T Consensus       712 t~~~~lTpt~KlkR~~v~~~y~~~i  736 (746)
T PTZ00342        712 DTNNYLTPTFKVKRFYVFKDYAFFI  736 (746)
T ss_pred             CCCCccChhhhhhHHHHHHHHHHHH
Confidence               2489999999999999887543

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.89  E-value=3.5e-23  Score=162.32  Aligned_cols=142  Identities=23%  Similarity=0.325  Sum_probs=108.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEE-c---CCCeEEEEeecCCeEEe-CcEEeChHHHH--HHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYV-D---HDDEVFIVDRVKEIIKF-KGFQVPPAEIE--ALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~-~---~~g~l~~~GR~d~~i~~-~G~~v~~~~ie--~~l~~~~~v~~~~~~~~~   73 (145)
                      ||++|+.|.+.|..+|||+|||++++ |   ++|.++++||+||++++ +|++|+|.++|  ..+.++|.|.++++++.+
T Consensus       437 Y~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~  516 (624)
T PRK12582        437 YHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD  516 (624)
T ss_pred             ccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC
Confidence            99999999999987999999999998 4   46899999999999996 89999999885  677889999999999988


Q ss_pred             CCCCCceeEEE------EEeCCCC----ccCHHHHHHHHHhcccccc--------CceEEEEeccCC------CCCCCcc
Q 038977           74 DEVAGEVPVAF------VVRSNGF----ELTEEAIKEYIAKQVVFYK--------RLHKVHFVHAIP------KSPSGKI  129 (145)
Q Consensus        74 ~~~~~~~~~~~------v~~~~~~----~~~~~~l~~~l~~~l~~~~--------~p~~~~~v~~~p------~t~~gK~  129 (145)
                      +...++.++.-      +....+.    ..+.+++.+.+...+..++        +|+.+.+++.+|      +|++||+
T Consensus       517 ~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~  596 (624)
T PRK12582        517 RAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYI  596 (624)
T ss_pred             CCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccc
Confidence            77444332210      0111110    0122455555555555554        999999997765      5788889


Q ss_pred             cHHHHHHHHHccC
Q 038977          130 LRKDLIAKLASSM  142 (145)
Q Consensus       130 ~r~~l~~~~~~~~  142 (145)
                      .|+.+.+.|.+.|
T Consensus       597 ~R~~~~~~y~~~i  609 (624)
T PRK12582        597 NQRAVLERRAALV  609 (624)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999988765

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.89  E-value=2.1e-22  Score=155.41  Aligned_cols=138  Identities=27%  Similarity=0.380  Sum_probs=103.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec--CCCCC
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK--DEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~--~~~~~   78 (145)
                      ||+.+.. ...+..+|||+|||+++++++|.++++||.+|+++++|.+|+|.+||+.+.+++.|.++.+++..  +...+
T Consensus       400 y~~~~~~-~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~  478 (545)
T PRK07768        400 YLTMDGF-IPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSR  478 (545)
T ss_pred             ccCCCCC-cccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCc
Confidence            5654433 33334588999999999999999999999999999999999999999999999999987666543  33334


Q ss_pred             ceeEEEEEeCCCCc-cCHHHHHHHHHhccccc--cCceEEEEec--cCCCCCCCcccHHHHHHHHH
Q 038977           79 EVPVAFVVRSNGFE-LTEEAIKEYIAKQVVFY--KRLHKVHFVH--AIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        79 ~~~~~~v~~~~~~~-~~~~~l~~~l~~~l~~~--~~p~~~~~v~--~~p~t~~gK~~r~~l~~~~~  139 (145)
                      +..++++....... ....++...+.+.+...  ..|..+.+++  .||+|++||++|+.|++.|.
T Consensus       479 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        479 EGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             eEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            44444444332211 12235666777766544  5788888886  89999999999999999875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.87  E-value=3e-21  Score=143.82  Aligned_cols=110  Identities=24%  Similarity=0.345  Sum_probs=96.4

Q ss_pred             CeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCccC-
Q 038977           16 GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELT-   94 (145)
Q Consensus        16 ~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-   94 (145)
                      .|++|||++++|++|.+++.||.||+|+++|.+|+|.+||+.+.++|.|.++++..     .++.+.+++++.++.... 
T Consensus       275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~  349 (386)
T TIGR02372       275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAE  349 (386)
T ss_pred             ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHH
Confidence            37999999999999999999999999999999999999999999999999988852     245677777776543322 


Q ss_pred             -HHHHHHHHHhccccccCceEEEEeccCCCCCCCccc
Q 038977           95 -EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKIL  130 (145)
Q Consensus        95 -~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~  130 (145)
                       .+++.+++.++++.+..|..+.+++.+|+|++||++
T Consensus       350 ~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       350 LEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence             468889999999999999999999999999999984

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=99.86  E-value=3.2e-21  Score=148.77  Aligned_cols=139  Identities=30%  Similarity=0.398  Sum_probs=111.5

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|++|+++|+.+||++|||+|+++++|.|+++||+++++|+ .|++|.|..||++..+.+.|...++++....   .
T Consensus       512 YyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~  588 (691)
T KOG1256|consen  512 YYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---S  588 (691)
T ss_pred             ccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---h
Confidence            99999999999999999999999999999999999999999999 9999999999999999999999999977654   3


Q ss_pred             eeEEEEEeCCCCcc----------CH--------------HHHHHHHH-hccccccCceEEEEe------ccCCCCCCCc
Q 038977           80 VPVAFVVRSNGFEL----------TE--------------EAIKEYIA-KQVVFYKRLHKVHFV------HAIPKSPSGK  128 (145)
Q Consensus        80 ~~~~~v~~~~~~~~----------~~--------------~~l~~~l~-~~l~~~~~p~~~~~v------~~~p~t~~gK  128 (145)
                      .++++|++......          +.              .++.+..+ ..+..+.....|.+.      +.-.+||+-|
T Consensus       589 ~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK  668 (691)
T KOG1256|consen  589 FLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLK  668 (691)
T ss_pred             cEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhh
Confidence            66777766433211          00              11222211 235667777777774      5566799999


Q ss_pred             ccHHHHHHHHHccC
Q 038977          129 ILRKDLIAKLASSM  142 (145)
Q Consensus       129 ~~r~~l~~~~~~~~  142 (145)
                      ++|..+.+.|..+|
T Consensus       669 ~KR~~l~~~yk~~I  682 (691)
T KOG1256|consen  669 IKRPQLLKYYKKQI  682 (691)
T ss_pred             hhhHHHHHHHHHHH
Confidence            99999999998775

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.85  E-value=3.1e-21  Score=149.31  Aligned_cols=138  Identities=26%  Similarity=0.435  Sum_probs=106.5

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|++|+++|+.+|||+|||+|.+|++|+|+++||++++|++ +|++|.|+.||+.+.++|.|..+++++..+.    
T Consensus       434 Yyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~----  509 (613)
T COG1022         434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKK----  509 (613)
T ss_pred             hcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCc----
Confidence            99999999999999999999999999999999999999999999 9999999999999999999999999994444    


Q ss_pred             eeEEEEEeCCCCc------------cCH------HHHHH----HH---HhccccccCceEEEEe------ccCCCCCCCc
Q 038977           80 VPVAFVVRSNGFE------------LTE------EAIKE----YI---AKQVVFYKRLHKVHFV------HAIPKSPSGK  128 (145)
Q Consensus        80 ~~~~~v~~~~~~~------------~~~------~~l~~----~l---~~~l~~~~~p~~~~~v------~~~p~t~~gK  128 (145)
                      .+.+++++....-            .+.      .++.+    .+   ......+..+..++..      +.--.|++-|
T Consensus       510 ~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~k  589 (613)
T COG1022         510 FLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLK  589 (613)
T ss_pred             ceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchh
Confidence            6666666543210            011      11211    11   2223445555555555      2345699999


Q ss_pred             ccHHHHHHHHHccC
Q 038977          129 ILRKDLIAKLASSM  142 (145)
Q Consensus       129 ~~r~~l~~~~~~~~  142 (145)
                      ++|..+.+.+...+
T Consensus       590 lkR~~i~~~~~~~i  603 (613)
T COG1022         590 LKRHVILDRYKDEI  603 (613)
T ss_pred             hhHHHHHHhhhhHH
Confidence            99999998887665

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.84  E-value=5.6e-21  Score=143.42  Aligned_cols=139  Identities=24%  Similarity=0.379  Sum_probs=115.5

Q ss_pred             CCCChhhhhcccCC-CC--eeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCC
Q 038977            1 YLNDPEATAATIDV-EG--LLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEV   76 (145)
Q Consensus         1 Y~~~~~~t~~~~~~-~~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~   76 (145)
                      ||+||+.|++.|.. +|  ||+|||+|++.+||+|.+++|++|.+|+ +|+.|+++-+|.++...|.|.+.++++.... 
T Consensus       497 Y~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~-  575 (678)
T KOG1180|consen  497 YYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK-  575 (678)
T ss_pred             hhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc-
Confidence            89999999999966 78  9999999999999999999999999999 9999999999999999999999999977655 


Q ss_pred             CCceeEEEEEeCCCCc--------cCH-------------HHHHHHH-----HhccccccCceEEEEecc------CCCC
Q 038977           77 AGEVPVAFVVRSNGFE--------LTE-------------EAIKEYI-----AKQVVFYKRLHKVHFVHA------IPKS  124 (145)
Q Consensus        77 ~~~~~~~~v~~~~~~~--------~~~-------------~~l~~~l-----~~~l~~~~~p~~~~~v~~------~p~t  124 (145)
                        ..++++|+++.+.-        ...             +++.+.|     .++|.++..|..|+++++      --.|
T Consensus       576 --s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT  653 (678)
T KOG1180|consen  576 --SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVT  653 (678)
T ss_pred             --ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccH
Confidence              58888998876431        110             1222222     446999999999998843      3457


Q ss_pred             CCCcccHHHHHHHHHccC
Q 038977          125 PSGKILRKDLIAKLASSM  142 (145)
Q Consensus       125 ~~gK~~r~~l~~~~~~~~  142 (145)
                      ..-|+.|+.++..|.+++
T Consensus       654 ~A~KLKRk~I~~~~k~ei  671 (678)
T KOG1180|consen  654 AALKLKRKEILAAYKKEI  671 (678)
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            788999999999988765

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.74  E-value=8.2e-18  Score=126.81  Aligned_cols=137  Identities=20%  Similarity=0.254  Sum_probs=119.7

Q ss_pred             CCCChhhhhccc------CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecC
Q 038977            1 YLNDPEATAATI------DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD   74 (145)
Q Consensus         1 Y~~~~~~t~~~~------~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~   74 (145)
                      |.+.+.+|++.+      .+|-||.|||+-..|+.|.+||.+|..|.+..+|+||+..++|+.|..+..++++.|+++.-
T Consensus       467 Y~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~V  546 (649)
T KOG1179|consen  467 YAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTV  546 (649)
T ss_pred             ccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEec
Confidence            556566666654      66779999999999999999999999999999999999999999999999999999998886


Q ss_pred             CCC-CceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           75 EVA-GEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        75 ~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      +.. |..-.+.+...+..+.+..++...++..||.|.+|..+.+++++++|.+-|..+.+|++.
T Consensus       547 P~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  547 PGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE  610 (649)
T ss_pred             CCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence            533 334445555677777888999999999999999999999999999999999999999875

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.72  E-value=3.1e-17  Score=132.19  Aligned_cols=122  Identities=25%  Similarity=0.420  Sum_probs=111.1

Q ss_pred             CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCcc-
Q 038977           15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFEL-   93 (145)
Q Consensus        15 ~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-   93 (145)
                      +.+|+|||+|+...+|.+.+.||.|+.||.+|.++.+.+|+..+..+|.|.++......+...++.+.+++........ 
T Consensus       453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~  532 (1032)
T KOG1178|consen  453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV  532 (1032)
T ss_pred             hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence            5589999999999999999999999999999999999999999999999999998888877778889999887665433 


Q ss_pred             CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           94 TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        94 ~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      ....+..++.+.++.+++|..++.++.+|+|++||+++.+|.+
T Consensus       533 ~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~  575 (1032)
T KOG1178|consen  533 LIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLE  575 (1032)
T ss_pred             hHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhh
Confidence            3467999999999999999999999999999999999999988

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.69  E-value=3.1e-16  Score=118.18  Aligned_cols=118  Identities=18%  Similarity=0.172  Sum_probs=83.0

Q ss_pred             hcccCCCCeeecCceEEEcCC-C-----eEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeE
Q 038977            9 AATIDVEGLLHTGDIGYVDHD-D-----EVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPV   82 (145)
Q Consensus         9 ~~~~~~~~~~~TGDl~~~~~~-g-----~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~   82 (145)
                      ...|. .+||+|||+++++++ |     .+++.||.+|+++++|.+|+|.+||..+..++.|.....+........+.+.
T Consensus       283 ~~~~p-~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~  361 (422)
T TIGR02155       283 KEALP-VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELT  361 (422)
T ss_pred             ccccc-eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEE
Confidence            34443 679999999999775 4     4689999999999999999999999999999999844444444443344555


Q ss_pred             EEEEeCCCCc-----cC----HHHHHHHHHhccccccCceEEEEe--ccCCCCCCCcccH
Q 038977           83 AFVVRSNGFE-----LT----EEAIKEYIAKQVVFYKRLHKVHFV--HAIPKSPSGKILR  131 (145)
Q Consensus        83 ~~v~~~~~~~-----~~----~~~l~~~l~~~l~~~~~p~~~~~v--~~~p~t~~gK~~r  131 (145)
                      +.++...+..     ..    .+++.+.+++.+....   .+.++  ++||+|+ ||++|
T Consensus       362 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~  417 (422)
T TIGR02155       362 LKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARR  417 (422)
T ss_pred             EEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceE
Confidence            6555543321     11    2456666666665543   24444  7999987 99876

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.56  E-value=5.4e-15  Score=110.17  Aligned_cols=69  Identities=38%  Similarity=0.630  Sum_probs=62.5

Q ss_pred             CCCChhhhhcccCCC------C--eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEE
Q 038977            1 YLNDPEATAATIDVE------G--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATV   69 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~------~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~   69 (145)
                      ||++++.|...|...      |  ||+|||++++|++|++++.||.+|+++++|.+|+|.+||+.+..++.|.++.+
T Consensus       332 y~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       332 YLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            889999998887322      2  99999999999999999999999999999999999999999999999987653

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.48  E-value=1.5e-13  Score=79.45  Aligned_cols=70  Identities=40%  Similarity=0.563  Sum_probs=60.8

Q ss_pred             HHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCc--eEEEEecc-CCCCCCCc
Q 038977           53 EIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRL--HKVHFVHA-IPKSPSGK  128 (145)
Q Consensus        53 ~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~v~~-~p~t~~gK  128 (145)
                      +||+.+.++++|.++++++.++..+|+.+++++++      +.+++.++++++++.+++|  ..++.+++ ||+|++||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence            68999999999999999999998888999999888      4489999999999999999  55555677 99999998

...

>PTZ00297 pantothenate kinase; Provisional

Probab=99.42  E-value=1.3e-12  Score=109.87  Aligned_cols=127  Identities=17%  Similarity=0.097  Sum_probs=95.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKF-KGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|++|++.+  +||+         ++|.|.|+||++|+||. +|++|+|+.||+.+..+|.|..+++++....    
T Consensus       832 ~~kdpe~T~e~~--~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----  896 (1452)
T PTZ00297        832 KKGEPRRTLPIA--AQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----  896 (1452)
T ss_pred             ECCChHHHHHhh--CcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----
Confidence            678899998854  5775         68999999999999999 9999999999999999999999999988766    


Q ss_pred             eeEEEEEeCCCCcc-------------------CHHH--------HHHHH---Hh--ccccccCceEEEEec-c-----C
Q 038977           80 VPVAFVVRSNGFEL-------------------TEEA--------IKEYI---AK--QVVFYKRLHKVHFVH-A-----I  121 (145)
Q Consensus        80 ~~~~~v~~~~~~~~-------------------~~~~--------l~~~l---~~--~l~~~~~p~~~~~v~-~-----~  121 (145)
                      .++++|+++...-.                   +..+        +.+.+   .+  .+..+.+++.+.+++ +     -
T Consensus       897 ~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enG  976 (1452)
T PTZ00297        897 PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHST  976 (1452)
T ss_pred             ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCC
Confidence            36777765531100                   1122        22222   11  245567777666652 3     3


Q ss_pred             CCCCCCcccHHHHHHHHHccC
Q 038977          122 PKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus       122 p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      .+||+.|++|..+.+.|.+.|
T Consensus       977 lLTPTlKlKR~~I~~kY~~~I  997 (1452)
T PTZ00297        977 FLTPYGKIRRDAVHSYFSSVI  997 (1452)
T ss_pred             cCChhhhhhHHHHHHHHHHHH
Confidence            589999999999999998765

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.10  E-value=1.6e-09  Score=81.24  Aligned_cols=113  Identities=21%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             eeecCceEEEcCCCe---------EEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcc-eEEEEeecCCCCCceeEEEEE
Q 038977           17 LLHTGDIGYVDHDDE---------VFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIA-DATVVPQKDEVAGEVPVAFVV   86 (145)
Q Consensus        17 ~~~TGDl~~~~~~g~---------l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~-~~~~~~~~~~~~~~~~~~~v~   86 (145)
                      -|+|||++.+.++.|         ..+.||.||++++.|++|+|..||+.+.+.+.+. ...++... ....+.+.+.++
T Consensus       303 RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE  381 (438)
T COG1541         303 RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVE  381 (438)
T ss_pred             EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEE
Confidence            599999999977432         6799999999999999999999999999999998 44444443 445556666677


Q ss_pred             eCCCCccCH--HHHHHHHHhccccccCce---EEEEeccCCCCCCCcccH
Q 038977           87 RSNGFELTE--EAIKEYIAKQVVFYKRLH---KVHFVHAIPKSPSGKILR  131 (145)
Q Consensus        87 ~~~~~~~~~--~~l~~~l~~~l~~~~~p~---~~~~v~~~p~t~~gK~~r  131 (145)
                      ..+.+....  .++...+.+.+......+   .++.+..+|++. ||..|
T Consensus       382 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~-~K~kr  430 (438)
T COG1541         382 LENEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTE-GKAKR  430 (438)
T ss_pred             ecCcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceeccc-CceeE
Confidence            665422222  223344444433332222   344447899995 57554

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.04  E-value=4.6e-09  Score=80.05  Aligned_cols=115  Identities=15%  Similarity=0.054  Sum_probs=67.8

Q ss_pred             eeecCceEEEc-CCCe--------EEEEeecCCeEEeCcEEeChHHHHHHHhcC---CCcceEE-EEeecCCCCCceeEE
Q 038977           17 LLHTGDIGYVD-HDDE--------VFIVDRVKEIIKFKGFQVPPAEIEALLLSH---PSIADAT-VVPQKDEVAGEVPVA   83 (145)
Q Consensus        17 ~~~TGDl~~~~-~~g~--------l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~---~~v~~~~-~~~~~~~~~~~~~~~   83 (145)
                      -|+|||++++. .+.|        +...||+||+++++|.+|+|.+||++|.+.   +.+.... ++..........+.+
T Consensus       299 RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  378 (445)
T TIGR03335       299 NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRV  378 (445)
T ss_pred             EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEE
Confidence            58999999973 2321        455799999999999999999999999994   5554333 333233222224444


Q ss_pred             EEEeCCCCccCHHHHHHHHHhc----ccc-------ccCceEEEEe--ccCCCC-CCCcccH
Q 038977           84 FVVRSNGFELTEEAIKEYIAKQ----VVF-------YKRLHKVHFV--HAIPKS-PSGKILR  131 (145)
Q Consensus        84 ~v~~~~~~~~~~~~l~~~l~~~----l~~-------~~~p~~~~~v--~~~p~t-~~gK~~r  131 (145)
                      .+...+......+++.+.+.+.    ++.       ......+.++  ..+|++ ..||..|
T Consensus       379 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       379 SLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             EEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence            4555443322333333333332    222       2222234444  568887 3588765

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.93  E-value=1.5e-09  Score=85.84  Aligned_cols=62  Identities=34%  Similarity=0.494  Sum_probs=57.8

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCC
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHP   62 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~   62 (145)
                      ||++|+.|...|..+.+|+|||+++..++|.+.++||.|.++|++|.+|.+.+||..+..++
T Consensus       581 y~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         581 YLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             hcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            89999999999964459999999999999999999999999999999999999999988764

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.62  E-value=2.3e-07  Score=56.33  Aligned_cols=85  Identities=27%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             cEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCcc---CHHHHHHHHHhccccccCce-EEEEe--c
Q 038977           46 GFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFEL---TEEAIKEYIAKQVVFYKRLH-KVHFV--H  119 (145)
Q Consensus        46 G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~-~~~~v--~  119 (145)
                      |.+|+|.+||+++.++|++...+.+........+.+.+.+....+...   ...++.+.+.+.+......+ .+.++  .
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~g   80 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPG   80 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCC
Confidence            889999999999999999995555545544456777777888775432   23455555555444333333 45555  6


Q ss_pred             cCCCCCCCcccH
Q 038977          120 AIPKSPSGKILR  131 (145)
Q Consensus       120 ~~p~t~~gK~~r  131 (145)
                      .||++ .||..|
T Consensus        81 tLpr~-~~K~~R   91 (96)
T PF14535_consen   81 TLPRS-EGKAKR   91 (96)
T ss_dssp             -S----SSSS-S
T ss_pred             CccCC-CCcceE
Confidence            79998 588765

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.60  E-value=7.6e-07  Score=72.76  Aligned_cols=122  Identities=18%  Similarity=0.321  Sum_probs=88.2

Q ss_pred             CCCCeeecCceEEE------cCCC----eEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCcceEEEEeecCCCCCcee
Q 038977           13 DVEGLLHTGDIGYV------DHDD----EVFIVDRVKEIIKFKGFQVPPAEIEALLLS-HPSIADATVVPQKDEVAGEVP   81 (145)
Q Consensus        13 ~~~~~~~TGDl~~~------~~~g----~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~-~~~v~~~~~~~~~~~~~~~~~   81 (145)
                      .+..|-||||+|++      |.++    .||++|-.++.+.++|.+.+|.+||+.+.. |+.|..+.++...     ..+
T Consensus      1216 ~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~-----glv 1290 (1363)
T KOG3628|consen 1216 LGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT-----GLV 1290 (1363)
T ss_pred             ccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeC-----CeE
Confidence            45779999999998      3333    599999999999999999999999998875 7999988888442     255


Q ss_pred             EEEEEeCCCCccCHHHHHH-HHHhccccccCce-EEEEe--ccCCCCCCCcccHHHHHHHHHcc
Q 038977           82 VAFVVRSNGFELTEEAIKE-YIAKQVVFYKRLH-KVHFV--HAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        82 ~~~v~~~~~~~~~~~~l~~-~l~~~l~~~~~p~-~~~~v--~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++...+  .....|.- -++..|..+.+.- .+.||  ..+|+.+.|-.+|..+.+.|..+
T Consensus      1291 VvviE~~gq--~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~ 1352 (1363)
T KOG3628|consen 1291 VVVIECHGQ--QELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAG 1352 (1363)
T ss_pred             EEEEEecCc--hhHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhc
Confidence            666655542  22222222 2234466555554 55555  56999999999999888776544

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=97.87  E-value=0.00026  Score=54.01  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=42.2

Q ss_pred             eeecCceEEEcCCCe--------E-EEEeecCCeEEe---Cc--EEeChHHHHHHHh-cCCCcceEEEEee
Q 038977           17 LLHTGDIGYVDHDDE--------V-FIVDRVKEIIKF---KG--FQVPPAEIEALLL-SHPSIADATVVPQ   72 (145)
Q Consensus        17 ~~~TGDl~~~~~~g~--------l-~~~GR~d~~i~~---~G--~~v~~~~ie~~l~-~~~~v~~~~~~~~   72 (145)
                      -|+|||++...++.|        + .+.||.+|++++   +|  ..|+|..+++.+. ..+.|.+..++..
T Consensus       296 RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~  366 (430)
T TIGR02304       296 RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT  366 (430)
T ss_pred             eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc
Confidence            599999999855432        3 488999999986   44  4569999988755 5688888877743

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=96.76  E-value=0.01  Score=46.67  Aligned_cols=102  Identities=16%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             eeecCceEEEcC--CC--eEEEEeecCCeEEeCcEEeChHHHHHHHhcC---CC--cceEEEEeecCCCCCceeEEEEEe
Q 038977           17 LLHTGDIGYVDH--DD--EVFIVDRVKEIIKFKGFQVPPAEIEALLLSH---PS--IADATVVPQKDEVAGEVPVAFVVR   87 (145)
Q Consensus        17 ~~~TGDl~~~~~--~g--~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~---~~--v~~~~~~~~~~~~~~~~~~~~v~~   87 (145)
                      -|+.||++++..  ++  .+.|+||.+.++.+.|++++-..+..++.+.   .+  +.+..+...........-+.++.+
T Consensus       370 RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~  449 (528)
T PF03321_consen  370 RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWEL  449 (528)
T ss_dssp             SEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEE
T ss_pred             eeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEe
Confidence            388999999832  34  7999999999999999999999999998875   22  345555544221122244455555


Q ss_pred             CCCCccCHHHHHHHHHhccc-------------cccCceEEEEec
Q 038977           88 SNGFELTEEAIKEYIAKQVV-------------FYKRLHKVHFVH  119 (145)
Q Consensus        88 ~~~~~~~~~~l~~~l~~~l~-------------~~~~p~~~~~v~  119 (145)
                      ... ..+.+.+.+.+.+.|.             ....|..+.++.
T Consensus       450 ~~~-~~~~~~~~~~lD~~L~~~n~~Y~~~R~~~g~L~p~~v~~v~  493 (528)
T PF03321_consen  450 EGE-PDDLEELAKALDESLQELNPHYRRARESDGQLGPPRVHIVR  493 (528)
T ss_dssp             CS--HHHHHHHHHHHHHCS----HHHHHHHHTSTSC---EEEEE-
T ss_pred             CCC-chHHHHHHHHHHHHhhhCCchHHHHHhhcCCcCCcEEEEeC
Confidence            544 2233455555555442             345566666663

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=96.45  E-value=0.0073  Score=50.53  Aligned_cols=120  Identities=16%  Similarity=0.309  Sum_probs=66.9

Q ss_pred             CeeecCceEEEcCCCeEEEEeecCC-eEEeCcEEeChHHHHH----------HHhcCCCcceEEEEeecCCCCCceeEEE
Q 038977           16 GLLHTGDIGYVDHDDEVFIVDRVKE-IIKFKGFQVPPAEIEA----------LLLSHPSIADATVVPQKDEVAGEVPVAF   84 (145)
Q Consensus        16 ~~~~TGDl~~~~~~g~l~~~GR~d~-~i~~~G~~v~~~~ie~----------~l~~~~~v~~~~~~~~~~~~~~~~~~~~   84 (145)
                      .|.|||=+|++ .+|.++++|-++| .....|-+.+..+|-.          +++..+.|-++.++-      .+..+++
T Consensus       571 ~FmRtGLlGFv-~~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv  643 (1363)
T KOG3628|consen  571 PFMRTGLLGFV-HNGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVV  643 (1363)
T ss_pred             hhhhhcceeee-eCCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEE
Confidence            48899999999 5566666665544 4445777666544433          233344455555553      1233333


Q ss_pred             EEeCCCC-ccCHHHHHHHHHhccccccCce--EEEEe--ccCCCCCCCcccHHHHHHHHHccC
Q 038977           85 VVRSNGF-ELTEEAIKEYIAKQVVFYKRLH--KVHFV--HAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        85 v~~~~~~-~~~~~~l~~~l~~~l~~~~~p~--~~~~v--~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +.-++.+ +.+.-+....+-+.+.......  .+.++  +.+|+|+-|-+...++++.|.++-
T Consensus       644 ~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G~  706 (1363)
T KOG3628|consen  644 VLESPDATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEGS  706 (1363)
T ss_pred             EEeCcchhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHcCC
Confidence            3322222 2222222222222222222222  23333  789999999999999999998875

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=94.25  E-value=0.93  Score=36.47  Aligned_cols=44  Identities=14%  Similarity=0.189  Sum_probs=38.5

Q ss_pred             eeecCceEEEcC----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977           17 LLHTGDIGYVDH----DDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS   60 (145)
Q Consensus        17 ~~~TGDl~~~~~----~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~   60 (145)
                      .|+.||.+++..    --.+.|+||.+.++.+.|+++.-.+++.++..
T Consensus       409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             EeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            388999999843    23799999999999999999999999998877

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=88.62  E-value=0.99  Score=36.33  Aligned_cols=45  Identities=13%  Similarity=0.159  Sum_probs=38.5

Q ss_pred             eeecCceEEEc----CCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q 038977           17 LLHTGDIGYVD----HDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH   61 (145)
Q Consensus        17 ~~~TGDl~~~~----~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~   61 (145)
                      .|+.||+.+..    .-..+.|++|.+.+..+.|++.+-.++..++.+.
T Consensus       416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             EEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence            37899999983    2357999999999999999999999998888764

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=88.43  E-value=1.1  Score=36.01  Aligned_cols=45  Identities=11%  Similarity=0.160  Sum_probs=38.2

Q ss_pred             eeecCceEEEc----CCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q 038977           17 LLHTGDIGYVD----HDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH   61 (145)
Q Consensus        17 ~~~TGDl~~~~----~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~   61 (145)
                      .|+.||+.+..    ....+.|++|.+.+..+.|++.+-.++..++.+.
T Consensus       422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence            37899999983    2357999999999999999999999998887763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-46
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		6e-46
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-34
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-34
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-34
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		9e-33
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-31
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-31
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-31
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		3e-31
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-23
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		5e-22
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-16
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-16
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		8e-16
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-15
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		5e-15
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-12
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		6e-12
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		8e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-11
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		1e-11
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-11
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		2e-11
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-11
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		2e-11
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		3e-11
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		5e-11
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		5e-11
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		1e-10
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-10
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-10
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-10
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-10
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-10
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		2e-10
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		2e-10
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		4e-10
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		3e-09
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		3e-09
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		5e-09
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		8e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-08
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		9e-08
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		9e-08
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		3e-07
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		2e-05
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-04
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		2e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  180 bits (456), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 119/140 (85%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLNDPEAT+ TID EG LHTGDIGY+D DDE+FIVDR+KE+IK+KGFQV PAE+EALL++
Sbjct: 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIA 455
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I+DA VV  KDE AGEVPVAFVV+S   + TE+ IK+YI+KQV+FYKR+ +V F+ A
Sbjct: 456 HPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEA 515
Query: 121 IPKSPSGKILRKDLIAKLAS 140
           IPK+PSGKILRK+L  KLA 
Sbjct: 516 IPKAPSGKILRKNLKEKLAG 535

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  179 bits (453), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 118/142 (83%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN+P ATA TID +G LHTGDIG +D DDE+FIVDR+KE+IK+KGFQV PAE+EALL+ 
Sbjct: 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIG 502
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP I D  VV  K+E AGEVPVAFVV+S   EL+E+ +K++++KQVVFYKR++KV F  +
Sbjct: 503 HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTES 562
Query: 121 IPKSPSGKILRKDLIAKLASSM 142
           IPK+PSGKILRKDL AKLA+ +
Sbjct: 563 IPKAPSGKILRKDLRAKLANGL 584

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT   ID EG LHTGDIGY D +   FIVDR+K +IK+KG+QVPPAE+E++LL 
Sbjct: 403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HPSI DA V    D VAGE+P A VV  +G  +TE+ + +Y+A QV   KRL   V FV 
Sbjct: 463 HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVD 522
Query: 120 AIPKSPSGKI 129
            +PK  +GKI
Sbjct: 523 EVPKGLTGKI 532

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT   ID EG LHTGDIGY D +   FIVDR+K +IK+KG+QVPPAE+E++LL 
Sbjct: 403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HPSI DA V    D VAGE+P A VV  +G  +TE+ + +Y+A QV   KRL   V FV 
Sbjct: 463 HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVD 522
Query: 120 AIPKSPSGKI 129
            +PK  +GKI
Sbjct: 523 EVPKGLTGKI 532

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT   ID EG LHTGDIGY D +   FIVDR+K +IK+KG+QVPPAE+E++LL 
Sbjct: 403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HPSI DA V    D VAGE+P A VV  +G  +TE+ + +Y+A QV   KRL   V FV 
Sbjct: 463 HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVD 522
Query: 120 AIPKSPSGKI 129
            +PK  +GKI
Sbjct: 523 EVPKGLTGKI 532

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  135 bits (340), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 89/130 (68%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT+A ID +G LH+GDI Y D D   FIVDR+K +IK+KG+QVPPAE+E++LL 
Sbjct: 436 YVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQ 495
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HP I DA V    D  AGE+P A VV   G  +TE+ + +Y+A QV   KRL   V FV 
Sbjct: 496 HPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVD 555
Query: 120 AIPKSPSGKI 129
            +PK  +GKI
Sbjct: 556 EVPKGLTGKI 565

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT A ID +G LH+GDI Y D D+  FIVDR+K +IK+KG+QV PAE+E++LL 
Sbjct: 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HP+I DA V    D+ AGE+P A VV  +G  +TE+ I +Y+A QV   K+L   V FV 
Sbjct: 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 520
Query: 120 AIPKSPSGKI 129
            +PK  +GK+
Sbjct: 521 EVPKGLTGKL 530

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT A ID +G LH+GDI Y D D+  FIVDR+K +IK+KG+QV PAE+E++LL 
Sbjct: 406 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 465
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HP+I DA V    D+ AGE+P A VV  +G  +TE+ I +Y+A QV   K+L   V FV 
Sbjct: 466 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 525
Query: 120 AIPKSPSGKI 129
            +PK  +GK+
Sbjct: 526 EVPKGLTGKL 535

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT A ID +G LH+GDI Y D D+  FIVDR+K +IK+KG+QV PAE+E++LL 
Sbjct: 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HP+I DA V    D+ AGE+P A VV  +G  +TE+ I +Y+A QV   K+L   V FV 
Sbjct: 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 520
Query: 120 AIPKSPSGKI 129
            +PK  +GK+
Sbjct: 521 EVPKGLTGKL 530

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT A ID +G LH+GDI Y D D+  FIVDR+K +IK+KG QV PAE+E++LL 
Sbjct: 406 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQ 465
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
           HP+I DA V    D+ AGE+P A VV  +G  +TE+ I +Y+A QV   K+L   V FV 
Sbjct: 466 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 525
Query: 120 AIPKSPSGKI 129
            +PK  +GK+
Sbjct: 526 EVPKGLTGKL 535

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 17  LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV 76
              TGD+G++D +  +   DRVKE+IK+KG+ + P E+EALL  H ++ D  V+ + DE 
Sbjct: 417 FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEE 476
Query: 77  AGEVPVAFVVRSNGF--ELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
           AGEVP AF+V    +  ++ EE I E++ +++  YKR+ +V FV  +P++ SGK+LR+ L
Sbjct: 477 AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLL 536
Query: 135 IAKLA 139
             K A
Sbjct: 537 REKEA 541

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y N PEAT    D  G   TGDIG +D +  ++I DR+K++I   G  V PAEIE++++ 
Sbjct: 376 YWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIG 434
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P +++  V+   DE  GE+  A VV ++  E++E+ I EY   ++  YK   KV F  A
Sbjct: 435 VPGVSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEA 493
Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
           IP++P+GKIL+  L  + ++++P
Sbjct: 494 IPRNPTGKILKTVLREQYSATVP 516

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+++P+ TAA I  +  L  GD G  D D     + R  +II   G+++ P+E+E  L+ 
Sbjct: 419 YVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME 477
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF------ELTEEAIKEYIAKQVVFYKRLHK 114
           HP++ +  V+   D V GEV  AFVV ++ F      +LT+E +++++      YK   K
Sbjct: 478 HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVTAPYKYPRK 536
Query: 115 VHFVHAIPKSPSGKILRKDL 134
           + FV  +PK+ +GKI R  L
Sbjct: 537 IEFVLNLPKTVTGKIQRAKL 556

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+++P+ TAA I  +  L  GD G  D D     + R  +II   G+++ P+E+E  L+ 
Sbjct: 419 YVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME 477
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF------ELTEEAIKEYIAKQVVFYKRLHK 114
           HP++ +  V+   D V GEV  AFVV ++ F      +LT+E +++++      YK   K
Sbjct: 478 HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVTAPYKYPRK 536
Query: 115 VHFVHAIPKSPSGKILRKDL 134
           + FV  +PK+ +GKI R  L
Sbjct: 537 IEFVLNLPKTVTGKIQRAKL 556

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRV--KEIIKFKGFQVPPAEIEALL 58
           Y N+  AT       G  HTGD+G  D D  +F   R   KE+IK  G  V PAE+E  L
Sbjct: 361 YWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGAL 419
Query: 59  LSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV 118
             HP+IADA V+   D    E   A  V   G  +  +A+ E++A  +  YK+   V FV
Sbjct: 420 KQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFV 479
Query: 119 HAIPKSPSGKILR 131
            A+PK   G I R
Sbjct: 480 EALPKDAKGAIDR 492

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDR-VKEIIKFKGFQVPPAEIEALLL 59
           YLN P+ATAA    +G   TGD+   D D  V IV R   ++IK  G+++   EIE  LL
Sbjct: 367 YLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL 426
Query: 60  SHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE-EAIKEYIAKQVVFYKRLHKVHFV 118
            HP + +A V  + D   GE  VA++V ++         + +++A ++  +KR   V ++
Sbjct: 427 EHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYL 486
Query: 119 HAIPKSPSGKILRKDL 134
            A+P++  GKI+++ L
Sbjct: 487 DAVPRNDMGKIMKRAL 502

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  DPE T  T   +G  HTGD+ ++D D  ++ V R  +IIK  G++V P E+E+ L+ 
Sbjct: 438 YGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHF 117
           HP++ +  +    D V G+V  A +V +  +  ++     +++++      YK    + F
Sbjct: 497 HPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEF 556
Query: 118 VHAIPKSPSGKILRKDLIAKLASS 141
           V  +PK+ SGKI R ++  K  S 
Sbjct: 557 VPELPKTISGKIRRVEIRDKDQSQ 580

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 16  GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDE 75
           G  +TGDI  +DH+  V I DR K++I   G  + P +IE +    P I+DA  V   D+
Sbjct: 375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDD 434
Query: 76  VAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
             G+VP  + V  +  ++++  +  Y++K +  YK       V  +P + +GK+ R  L
Sbjct: 435 TWGQVPKLYFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           + +  +GD    D D   +I  RV +++   G ++  AEIE+ L++HP IA+A VV    
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75  EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
            + G+   A+V  ++G E + E    ++ ++AK++        +H+  ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
           + ++ K+A+
Sbjct: 613 R-ILRKIAA 620

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE T +    +G   TGD+G +D    V I+ R K+++   GF V P EIE+ + +
Sbjct: 361 YWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P + ++ V+       GE   A VVR  G  + E  +   +  Q+  +K   KV FV  
Sbjct: 421 XPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDD 480
Query: 121 IPKSPSGKILRKDL 134
           +P++  GK+ +  L
Sbjct: 481 LPRNTXGKVQKNVL 494

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  + EAT + +  +G   TGDI   D +  V I DR+K++IK  G  +   ++E  L+ 
Sbjct: 397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVH-FVH 119
           HP + +A VV        E P+A VV   G + T E + E++ K      +L   + F  
Sbjct: 457 HPKVKEAAVVAIPHPKWQERPLAVVV-PRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAE 515
Query: 120 AIPKSPSGKILRKDL 134
            IP++ +GK L++ L
Sbjct: 516 EIPRTSAGKFLKRAL 530

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ATA  +  +G   T D+     +  V I+ RV + I   G  + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGT 423
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
            P + +  V+   D+  G+   A VV   G  L+ +A+  +  + ++  +KR  +   + 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
            +PK+   K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           + +  +GD    D D   +I  RV +++   G ++  AEIE+ L++HP IA+A VV    
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75  EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
            + G+   A+V  ++G E + E    ++ ++ K++        +H+  ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
           + ++ K+A+
Sbjct: 613 R-ILRKIAA 620

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           + +  +GD    D D   +I  RV +++   G ++  AEIE+ L++HP IA+A VV    
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75  EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
            + G+   A+V  ++G E + E    ++ ++ K++        +H+  ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
           + ++ K+A+
Sbjct: 613 R-ILRKIAA 620

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           + +  +GD    D D   +I  RV +++   G ++  AEIE+ L++HP IA+A VV    
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75  EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
            + G+   A+V  ++G E + E    ++ ++ K++        +H+  ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
           + ++ K+A+
Sbjct: 613 R-ILRKIAA 620

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           + +  +GD    D D   +I  RV +++   G ++  AEIE+ L++HP IA+A VV    
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75  EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
            + G+   A+V  ++G E + E    ++ ++ K++        +H+  ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
           + ++ K+A+
Sbjct: 613 R-ILRKIAA 620

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           + +  +GD    D D   +I  RV +++   G ++  AEIE+ L++HP IA+A VV    
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75  EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
            + G+   A+V  ++G E + E    ++ ++ K++        +H+  ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
           + ++ K+A+
Sbjct: 613 R-ILRKIAA 620

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   P+  A+  D  G   +GD+  +D +  + +  R K+ I   G ++   EIE LLL 
Sbjct: 396 YYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLR 455
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVH 119
           HP++  A +V  +DE+ GE   A++V        +  ++ ++ +Q +  +K   +V  V 
Sbjct: 456 HPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQ--VRRFLREQGIAEFKLPDRVECVD 513
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
           ++P +  GK+ +K L   LAS
Sbjct: 514 SLPLTAVGKVDKKQLRQWLAS 534

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN PEATA  +  +G   T D+     +  V I+ RV ++I   G  + P+EIE +L +
Sbjct: 365 YLNQPEATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
            P + +  V+   D+  G+   A VV   G  L+ +A+  +  + ++  +KR  +   + 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
            +PK+   K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ATA  +  +G   T D+     +  V I+ RV ++I   G  + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
            P + +  V+   D+  G+   A VV   G  L+ +A+  +  + ++  +KR  +   + 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
            +PK+   K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ATA  +  +G   T D+     +  V I+ RV ++I   G  + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
            P + +  V+   D+  G+   A VV   G  L+ +A+  +  + ++  +KR  +   + 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
            +PK+   K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ATA  +  +G   T D+     +  V I+ RV ++I   G  + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
            P + +  V+   D+  G+   A VV   G  L+ +A+  +  + ++  +KR  +   + 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
            +PK+   K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           + +  +GD    D D   +I  RV +++   G ++  AEIE+ L++HP IA+A VV    
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75  EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
            + G+   A+V  ++G E + E    ++ ++ K++        +H+  ++PK+ SG I+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMR 612
Query: 132 KDLIAKLAS 140
           + ++ K+A+
Sbjct: 613 R-ILRKIAA 620

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ATA  +  +G   T D+     +  V I+ RV ++I   G  + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGT 423
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
            P + +  V+   D+  G+   A VV   G  L+ +A+  +  + ++  +KR  +   + 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
            +PK+   K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE  +   D +   ++GD+     D  + +V R+K+ I   G ++   EIE L+L 
Sbjct: 401 YYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILL 460
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVH 119
           HP +  A +V   DE  GE   AF+V  N  EL    ++ ++ +  +  YK   ++  + 
Sbjct: 461 HPEVMHAALVAIVDEQFGEKSCAFIVSRNP-ELKAVVLRRHLMELGIAQYKLPDQIKLIE 519
Query: 120 AIPKSPSGKILRKDLIAKLASS 141
           ++P +  GK+ +K L + L +S
Sbjct: 520 SLPLTAVGKVDKKQLRSILNTS 541

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 16  GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDE 75
           G   TGD    D D  ++I+ RV +++   G ++  AEIEA ++  P +A+  VV   D+
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 76  VAGEVPVAFVV---RSNGFELTEEAIKEYIAKQVVFYKRLHKVHF--------VHAIPKS 124
           + G+   AFVV   +S+    T++ +++ I K +VF  R     F        V  +PK+
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQD-IKKHLVFTVRKDIGPFAAPKLIILVDDLPKT 621
Query: 125 PSGKILRKDLIAKLAS 140
            SGKI+R+ L   LA 
Sbjct: 622 RSGKIMRRILRKILAG 637

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y    E  AA+   +G   TGDI  +  D  + +  R K+ I   G +V   E+E  LL+
Sbjct: 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVH 119
           HP++ DA +V   D+  GE    F++  +      E +K ++ ++ +  YK   +V FV 
Sbjct: 452 HPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAE-LKAFLRERGLAAYKIPDRVEFVE 510
Query: 120 AIPKSPSGKILRKDL 134
           + P++  GK+ +K L
Sbjct: 511 SFPQTGVGKVSKKAL 525

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 62/134 (46%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y    E  AA+   +G   TGDI  +  D  + +  R K+ I   G +V   E+E  LL+
Sbjct: 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ DA  V   D+  GE    F++  +      E       + +  YK   +V FV +
Sbjct: 452 HPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVES 511
Query: 121 IPKSPSGKILRKDL 134
            P++  GK+ +K L
Sbjct: 512 FPQTGVGKVSKKAL 525

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           E +  TGD+     D  +  V R  + +K +GF+V P E+EA L+ HP++  A V+ Q  
Sbjct: 445 ERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDS 504
Query: 75  EVAGEVPVAFVVRSNGFELTEEA-IKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKD 133
            +  +  VA+VV        + A ++ ++A+ +  Y    +   V  +P++P+GK+ R+ 
Sbjct: 505 RLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRA 564
Query: 134 L 134
           L
Sbjct: 565 L 565

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 13/147 (8%)
Query: 1   YLNDPEATAA---TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           YLN+PE TA    T   +   HTGDIG +  D+ +    R+   IK+ G+++   ++   
Sbjct: 362 YLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQ 421
Query: 58  LLSHPSIADATVVPQKD-EVAGEVPVAFVVRSNG--------FELTEEAIKEYIAKQVVF 108
           L   P +A A  VP+ + E   +  +A++V  +G         ELT +AIK  +   ++ 
Sbjct: 422 LNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELT-KAIKASVKDHMMS 480
Query: 109 YKRLHKVHFVHAIPKSPSGKILRKDLI 135
           Y    K  +  ++P +P+GKI  K LI
Sbjct: 481 YMMPSKFLYRDSLPLTPNGKIDIKTLI 507

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE T +    +G   TGD+G +D    V I+ R  +++   GF V P EIE+ + +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P + ++ V+       GE   A VVR  G  + E  +   +  Q+  +     V FV  
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDD 480
Query: 121 IPKSPSGKI 129
           +P++  G +
Sbjct: 481 LPRNTMGAV 489

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE T +    +G   TGD+G +D    V I+ R  +++   GF V P EIE+ + +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
            P + ++ V+       GE   AFVV    F  +E  +   +  Q+  +     V FV  
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFVDD 480
Query: 121 IPKSPSGKI 129
           +P++  G +
Sbjct: 481 LPRNTMGAV 489

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y   PE T +    +G   TGD+G +D    V I+ R  +++   GF V P EIE+ + +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKVHF 117
            P + ++ V+       GE   AFVV    F   E+  E +  ++  ++  +     V F
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIF 480
Query: 118 VHAIPKSPSGKI 129
           V  +P++  G +
Sbjct: 481 VDDLPRNTMGAV 492

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 1   YLNDPEATA---ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           YL  PE T      ID E    TGD GYV+ +  +F   R+   IK  G+++   EIE  
Sbjct: 359 YLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHH 417
Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRS-----NGFELTEEAIKEYIAKQVVFYKRL 112
           L +   +  A +VP K     +  +A VV         F+LT  AIK+ + +++  Y   
Sbjct: 418 LRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS-AIKKELNERLPNYMIP 476
Query: 113 HKVHFVHAIPKSPSGKILRKDLIAKLAS 140
            K  +  +IP +P+GK+ RK L++++ +
Sbjct: 477 RKFMYQSSIPMTPNGKVDRKKLLSEVTA 504

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 1   YLNDPEATA---ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           YL  PE T      ID E    TGD GYV+ +  +F   R+   IK  G+++   EIE  
Sbjct: 359 YLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHH 417
Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVRS-----NGFELTEEAIKEYIAKQVVFYKRL 112
           L +   +  A +VP K     +  +A VV         F+LT  AIK+ + +++  Y   
Sbjct: 418 LRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS-AIKKELNERLPNYMIP 476
Query: 113 HKVHFVHAIPKSPSGKILRKDLIAKLAS 140
            K  +  +IP +P+GK+ RK L++++ +
Sbjct: 477 RKFMYQSSIPMTPNGKVDRKKLLSEVTA 504

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 15  EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
           E L  TGD+     D  +    R+ + +K +G ++   EIE  L  +P + DA VV  + 
Sbjct: 837 ETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRH 896
Query: 75  EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
           E       A++V  N  +L+ E +K ++ KQ+  Y       F+  +P + +GK+ ++ L
Sbjct: 897 ESGDASINAYLV--NRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFI-VDRVKEIIKFKGFQVPPAEIEALLL 59
           Y N+ E + AT   E  + +GD  Y    +  ++   R  +++K  G  V P E+E +L+
Sbjct: 392 YWNNREKSRATFLGE-WIRSGD-KYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV 449
Query: 60  SHPSIADATVVPQKDEVAGEVPV-AFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKV 115
            H ++ +A VV       G V   AFVV    F   E+  E +K ++  ++  +K    +
Sbjct: 450 QHDAVLEAAVVGVDH--GGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDI 507
Query: 116 HFVHAIPKSPSGKILRKDL 134
            FV  +PK+ +GKI R  L
Sbjct: 508 VFVDDLPKTATGKIQRFKL 526

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 1   YLNDPEATAAT------IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
           Y   PE T+        +  E L  TGD      D  +  + R+   +K +G +V   E+
Sbjct: 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEV 445
Query: 55  EALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK 114
           E++LL H  I++  V   KD        A+ V      L  E ++++ ++++  Y  +  
Sbjct: 446 ESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPL--EQLRQFSSEELPTY--MIP 501
Query: 115 VHFVH--AIPKSPSGKILRKDL 134
            +F+    +P + +GKI RK L
Sbjct: 502 SYFIQLDKMPLTSNGKIDRKQL 523

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 1   YLNDPEAT-AATIDVEGLL--HTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
           YL +PE T  A    EG     TGD G++  D ++F   R+   IK  G+++   EIE  
Sbjct: 358 YLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFH 416
Query: 58  LLSHPSIADATVVPQKDEVAGEVPVAFVVR-----SNGFELTEEAIKEYIAKQVVFYKRL 112
           +     +  A V+P +     E  +A +V         F+LT  AIK+ +A  +  Y   
Sbjct: 417 VRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLT-SAIKKELAASLPAYMIP 475
Query: 113 HKVHFVHAIPKSPSGKILRKDL 134
            K  +   I  + +GKI RK +
Sbjct: 476 RKFIYQDHIQMTANGKIDRKRI 497

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.98
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.98
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.97
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.97
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.97
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.97
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.97
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.97
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.97
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.96
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.96
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.96
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.95
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.9
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.9
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.89
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.76
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.75
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.69
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.54
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	97.54

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2.1e-35  Score=224.85  Aligned_cols=141  Identities=29%  Similarity=0.449  Sum_probs=135.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       361 Y~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~  440 (503)
T 4fuq_A          361 YWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEG  440 (503)
T ss_dssp             BTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred             hcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCce
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      ++++++...+...+.+++.+.++++|+.+++|..++++++||+|++||++|++|++++.+-
T Consensus       441 ~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  501 (503)
T 4fuq_A          441 VTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI  501 (503)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred             eEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence            9999998888788889999999999999999999999999999999999999999998754

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.2e-35  Score=225.21  Aligned_cols=139  Identities=71%  Similarity=1.110  Sum_probs=132.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       396 Y~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~  475 (536)
T 3ni2_A          396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEV  475 (536)
T ss_dssp             ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred             hcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCce
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      ++++++...+...+.+++.++++++++.+++|..++++++||+|++||++|++|++++.
T Consensus       476 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~  534 (536)
T 3ni2_A          476 PVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA  534 (536)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence            99999988877788899999999999999999999999999999999999999998775

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5.4e-35  Score=223.22  Aligned_cols=141  Identities=38%  Similarity=0.648  Sum_probs=132.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|. +|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       376 Y~~~p~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~  454 (517)
T 3r44_A          376 YWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEI  454 (517)
T ss_dssp             ETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             hCCChhhhHhhhc-CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCce
Confidence            8999999999995 999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMP  143 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~  143 (145)
                      +++++ ...+...+.+++.++++++|+.+++|..++++++||+|++||++|++|++++.+.++
T Consensus       455 ~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~  516 (517)
T 3r44_A          455 AAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP  516 (517)
T ss_dssp             EEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred             EEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence            77777 555566788999999999999999999999999999999999999999999998875

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1e-34  Score=220.96  Aligned_cols=138  Identities=28%  Similarity=0.492  Sum_probs=131.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.| .+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       365 Y~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~  443 (504)
T 1t5h_X          365 YLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS  443 (504)
T ss_dssp             BTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEE
T ss_pred             ecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcE
Confidence            899999999999 4899999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA  139 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~  139 (145)
                      +++++++..+...+.+++.+++++ +|+.+++|+.++++++||+|++||++|++|++++.
T Consensus       444 ~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          444 VTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             EEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence            999999887766788899999998 99999999999999999999999999999999874

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.1e-34  Score=222.41  Aligned_cols=141  Identities=28%  Similarity=0.497  Sum_probs=131.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|..+|||+|||+|++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       392 Y~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~  471 (539)
T 1mdb_A          392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGER  471 (539)
T ss_dssp             CTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             hcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCce
Confidence            99999999999987999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++++.. ...+.+++.+.++++ |+.+++|..++++++||+|++||++|++|++++.+.+
T Consensus       472 ~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i  533 (539)
T 1mdb_A          472 SCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL  533 (539)
T ss_dssp             EEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             EEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence            888888763 356778999999997 9999999999999999999999999999999987654

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=2.3e-34  Score=221.07  Aligned_cols=143  Identities=51%  Similarity=0.804  Sum_probs=135.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|..+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       403 Y~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~  482 (548)
T 2d1s_A          403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGEL  482 (548)
T ss_dssp             ETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred             hcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCee
Confidence            89999999999987999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCce-EEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVHAIPKSPSGKILRKDLIAKLASSMP  143 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~  143 (145)
                      +++++++..+...+.+++.++++++++.+++|+ .+.+++++|+|++||++|++|++++.+.+.
T Consensus       483 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~  546 (548)
T 2d1s_A          483 PGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA  546 (548)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred             eEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhh
Confidence            899998887766788999999999999999999 999999999999999999999999987663

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.8e-34  Score=216.67  Aligned_cols=136  Identities=34%  Similarity=0.543  Sum_probs=115.8

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeec-CCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRV-KEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE   79 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~-d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~   79 (145)
                      ||++|+.|++.|..+|||+|||++++|++|.++++||+ |++||++|.+|+|.+||+.|.++|.|.++++++.++...++
T Consensus       367 Y~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~  446 (505)
T 3nyq_A          367 YLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGE  446 (505)
T ss_dssp             ETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEE
T ss_pred             hCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCc
Confidence            89999999999988999999999999999999999998 69999999999999999999999999999999999988888


Q ss_pred             eeEEEEEeCC-CCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           80 VPVAFVVRSN-GFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        80 ~~~~~v~~~~-~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      .+++++++.. ....+.+++.++++++|+.+++|..++++++||+|++||++|++|++
T Consensus       447 ~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          447 RIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             EEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence            9999998875 34567789999999999999999999999999999999999999986

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=4.6e-34  Score=220.81  Aligned_cols=139  Identities=32%  Similarity=0.563  Sum_probs=111.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|. +|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       438 Y~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~  516 (580)
T 3etc_A          438 YGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV  516 (580)
T ss_dssp             ETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             ccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcE
Confidence            8999999999996 999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             eEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +.+++++..+....   .+++.+.+++.++.+++|+.+.++++||+|++||++|++|++++.+
T Consensus       517 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          517 IKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence            99999988765443   3689999999999999999999999999999999999999998765

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=5.1e-34  Score=219.09  Aligned_cols=141  Identities=38%  Similarity=0.670  Sum_probs=92.3

Q ss_pred             CCCChhhhhcccC--CCC--eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC
Q 038977            1 YLNDPEATAATID--VEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV   76 (145)
Q Consensus         1 Y~~~~~~t~~~~~--~~~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~   76 (145)
                      ||++|+.|.+.|.  .+|  ||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++..
T Consensus       397 Y~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~  476 (549)
T 3g7s_A          397 YWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEE  476 (549)
T ss_dssp             ETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC--
T ss_pred             hCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccc
Confidence            8999999999982  466  999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCceeEEEEEeCCC--CccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           77 AGEVPVAFVVRSNG--FELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        77 ~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      .++.+++++++..+  ...+.+++.++++++|+.+++|..+.++++||+|++||++|++|++.+.+.
T Consensus       477 ~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          477 AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             ----CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------
T ss_pred             cCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence            88899999988776  456789999999999999999999999999999999999999999987654

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=6.8e-33  Score=215.45  Aligned_cols=138  Identities=29%  Similarity=0.498  Sum_probs=129.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      |||+|+.|++.|..++||+|||+++++++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       396 Y~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~  475 (617)
T 3rg2_A          396 YYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEK  475 (617)
T ss_dssp             CTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             hcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCee
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999988878888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      ++++++...  ..+..++.+.+++ .++.+++|..+++++.||+|++||++|++|++.+..
T Consensus       476 ~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~  534 (617)
T 3rg2_A          476 SCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS  534 (617)
T ss_dssp             EEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred             EEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence            888888765  3567889999998 699999999999999999999999999999998754

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.4e-34  Score=220.65  Aligned_cols=142  Identities=30%  Similarity=0.454  Sum_probs=94.6

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++..+++.
T Consensus       397 Y~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~  476 (541)
T 1v25_A          397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER  476 (541)
T ss_dssp             CBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEE
T ss_pred             ccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCce
Confidence            99999999999987999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMP  143 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~  143 (145)
                      +++++++. +...+.+++.+++.+ +|+.+++|..++++++||+|++||++|++|++.+.+.+.
T Consensus       477 ~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~  539 (541)
T 1v25_A          477 PLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG  539 (541)
T ss_dssp             EEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred             EEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence            88888765 334556788999998 899999999999999999999999999999999877653

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=9.5e-33  Score=215.89  Aligned_cols=141  Identities=28%  Similarity=0.448  Sum_probs=130.1

Q ss_pred             CCCChhhhhccc--CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~--~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++|+.+.+.|  ..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...+
T Consensus       477 Y~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g  556 (652)
T 1pg4_A          477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG  556 (652)
T ss_dssp             ETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTE
T ss_pred             hcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCC
Confidence            899999988776  248999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ceeEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.+++++++..+...+   .+++.+++++.++.+++|..+++++.||+|++||++|+.|++.+..+
T Consensus       557 ~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  622 (652)
T 1pg4_A          557 QAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  622 (652)
T ss_dssp             EEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             eEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence            8999999988765443   47899999999999999999999999999999999999999998775

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.3e-32  Score=209.60  Aligned_cols=141  Identities=30%  Similarity=0.430  Sum_probs=127.6

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~   77 (145)
                      ||++|+.|.+.|   +++|||+|||++++ ++|.+++.||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...
T Consensus       359 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~  437 (512)
T 3fce_A          359 YLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEK  437 (512)
T ss_dssp             BTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTE
T ss_pred             hcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCC
Confidence            999999999998   45789999999999 89999999999999999999999999999999999999999999988888


Q ss_pred             CceeEEEEEeCCCCccCH----HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           78 GEVPVAFVVRSNGFELTE----EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ++.+++++++........    +++.+.++++|+.+++|..+++++++|+|++||++|++|++.+.++-
T Consensus       438 ~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~  506 (512)
T 3fce_A          438 YDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE  506 (512)
T ss_dssp             EEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred             ceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence            888888888876544332    57889999999999999999999999999999999999999987653

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=5.7e-33  Score=211.91  Aligned_cols=142  Identities=28%  Similarity=0.467  Sum_probs=118.7

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC-
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV-   76 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~-   76 (145)
                      ||++|+.|++.|   +++|||+|||+|++|++|++++.||+||+||++|.+|+|.+||+.|.++|.|.++++++..+.. 
T Consensus       362 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~  441 (521)
T 3l8c_A          362 YLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEH  441 (521)
T ss_dssp             BTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSC
T ss_pred             hcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCC
Confidence            999999999998   5678999999999999999999999999999999999999999999999999999999877543 


Q ss_pred             CCceeEEEEEeCCCCccC-------HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           77 AGEVPVAFVVRSNGFELT-------EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~-------~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      .++.+++++++..+....       .+++.+.++++|+.+++|..++++++||+|++||++|++|++++.++-
T Consensus       442 ~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~  514 (521)
T 3l8c_A          442 KVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE  514 (521)
T ss_dssp             C---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred             CceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence            456788888887764321       467889999999999999999999999999999999999999886653

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.4e-32  Score=212.08  Aligned_cols=139  Identities=32%  Similarity=0.536  Sum_probs=127.4

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|. +|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       419 Y~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~  497 (570)
T 3c5e_A          419 YVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV  497 (570)
T ss_dssp             ETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred             ccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeE
Confidence            8999999999995 899999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCc-----cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFE-----LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      +++++++..+..     ...+++.+.+++.++.+++|..+.++++||+|++||++|++|++.+..
T Consensus       498 ~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  562 (570)
T 3c5e_A          498 VKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK  562 (570)
T ss_dssp             EEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred             EEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence            888888765431     124688899999999999999999999999999999999999998754

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=4e-34  Score=219.56  Aligned_cols=140  Identities=29%  Similarity=0.473  Sum_probs=38.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|..+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       401 Y~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~  480 (544)
T 3o83_A          401 YYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK  480 (544)
T ss_dssp             CTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------
T ss_pred             hcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCce
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      ++++++... ...+..++.+.+.+ .++.+++|..++++++||+|++||++|++|++++.+.
T Consensus       481 ~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          481 SCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             --------------------------------------------------------------
T ss_pred             EEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence            888887665 34556778888888 7999999999999999999999999999999988764

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=6.5e-32  Score=205.81  Aligned_cols=140  Identities=26%  Similarity=0.350  Sum_probs=126.3

Q ss_pred             CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977            1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA   77 (145)
Q Consensus         1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~   77 (145)
                      ||++|+.|++.|   ++.+||+|||++++ ++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...
T Consensus       358 Y~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~  436 (511)
T 3e7w_A          358 YLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGT  436 (511)
T ss_dssp             BTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSS
T ss_pred             hCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCC
Confidence            999999999998   22337999999999 69999999999999999999999999999999999999999999988888


Q ss_pred             CceeEEEEEeCCCCccC----HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           78 GEVPVAFVVRSNGFELT----EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        78 ~~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      ++.+++++++..+....    .+++.+.++++|+.+++|..++++++||+|++||++|++|++.+...
T Consensus       437 ~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          437 VEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             CCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred             ceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence            88889988887765444    36788899999999999999999999999999999999999988653

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.6e-32  Score=208.55  Aligned_cols=136  Identities=29%  Similarity=0.505  Sum_probs=110.2

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.. | .+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       362 Y~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~  439 (501)
T 3ipl_A          362 YLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQV  439 (501)
T ss_dssp             CSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             hCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCce
Confidence            8999999988 6 4899999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS  140 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~  140 (145)
                      ++++++...  ..+.+++.++++++|+.+++|..++++++||+|++||++|++|++...+
T Consensus       440 ~~a~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~  497 (501)
T 3ipl_A          440 PKLYFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH  497 (501)
T ss_dssp             EEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred             EEEEEEeCC--CCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence            888887643  4677899999999999999999999999999999999999999987654

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.98  E-value=1.8e-32  Score=211.21  Aligned_cols=136  Identities=25%  Similarity=0.360  Sum_probs=125.2

Q ss_pred             CCCChhhhhcccC------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecC
Q 038977            1 YLNDPEATAATID------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD   74 (145)
Q Consensus         1 Y~~~~~~t~~~~~------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~   74 (145)
                      ||++|+.|++.|.      +++||+|||+|++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++
T Consensus       386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~  465 (563)
T 1amu_A          386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD  465 (563)
T ss_dssp             ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred             hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence            8999999999983      3469999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHH
Q 038977           75 EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKL  138 (145)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~  138 (145)
                      ...++.++++++...  ..+.+++.++++++|+.+++|..++++++||+|++||++|++|++..
T Consensus       466 ~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          466 HQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             TTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred             CCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence            888888888888764  35678999999999999999999999999999999999999997643

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.98  E-value=5e-34  Score=217.32  Aligned_cols=140  Identities=36%  Similarity=0.522  Sum_probs=36.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeec--CCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRV--KEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~--d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++|+.|.+.|. +|||+|||++++|++|+++++||.  +|+||++|.+|+|.+||+.|.++|.|.++++++.++...+
T Consensus       361 Y~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~  439 (509)
T 3ivr_A          361 YWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWS  439 (509)
T ss_dssp             ETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC------------------------------------------
T ss_pred             ccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccC
Confidence            8999999999996 999999999999999999999999  9999999999999999999999999999999999998888


Q ss_pred             ceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.+++++++.++...+.+++.+.++++|+.+++|..++++++||+|++||++|++|++++.+.
T Consensus       440 ~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          440 EAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence            888888888777667778999999999999999999999999999999999999999988764

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.97  E-value=2.9e-32  Score=213.53  Aligned_cols=141  Identities=28%  Similarity=0.412  Sum_probs=125.3

Q ss_pred             CCCChhhhhcccC--CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATID--VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~~--~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++|+.+.+.|.  .+|||+|||++++|++|+++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...+
T Consensus       486 y~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g  565 (663)
T 1ry2_A          486 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG  565 (663)
T ss_dssp             ETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTS
T ss_pred             cccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCC
Confidence            8999999988763  38999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ceeEEEEEeCCCCc---c-------CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFE---L-------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~---~-------~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.++++|++..+..   .       ..+++.+.+++.++.+++|..+++++.||+|++||++|+.|++.+..+
T Consensus       566 ~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          566 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             eEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence            89999998876543   2       247899999999999999999999999999999999999999877654

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.97  E-value=1.2e-33  Score=217.02  Aligned_cols=142  Identities=48%  Similarity=0.772  Sum_probs=34.2

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       401 Y~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~  480 (550)
T 3rix_A          401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL  480 (550)
T ss_dssp             ETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------------------------------------------
T ss_pred             hcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCce
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCce-EEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++++..+...+.+++.++++++++.+..|. .++++++||+|++||++|++|++++.+..
T Consensus       481 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  543 (550)
T 3rix_A          481 PAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  543 (550)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             EEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence            899988887767777899999999999887665 69999999999999999999999987654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.97  E-value=2.9e-33  Score=226.69  Aligned_cols=142  Identities=66%  Similarity=1.077  Sum_probs=39.3

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|++.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       443 Y~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~  522 (979)
T 3tsy_A          443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEV  522 (979)
T ss_dssp             ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------
T ss_pred             ccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcE
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ++++++...+...+.+++.++++++++.+++|..++++++||+|++||++|++|++++.+++
T Consensus       523 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  584 (979)
T 3tsy_A          523 PVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL  584 (979)
T ss_dssp             --------------------------------------------------------------
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence            88888877766677789999999999999999999999999999999999999999987654

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.97  E-value=4.2e-33  Score=214.88  Aligned_cols=137  Identities=28%  Similarity=0.472  Sum_probs=34.3

Q ss_pred             CCCChhhhhcccCC--------CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEee
Q 038977            1 YLNDPEATAATIDV--------EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQ   72 (145)
Q Consensus         1 Y~~~~~~t~~~~~~--------~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~   72 (145)
                      ||++|+.|+++|..        +|||+|||+|++|++|.++++||+||+||++|++|+|.+||+.|.++|.|.++++++.
T Consensus       423 Y~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~  502 (570)
T 4gr5_A          423 YVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ  502 (570)
T ss_dssp             ETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----------------------------------
T ss_pred             cCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEe
Confidence            89999999999843        3799999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceeEEEEEeCCC-CccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           73 KDEVAGEVPVAFVVRSNG-FELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      ++..+++.++++++.... ...+.+++.++++++++.+++|..++++++||+|++||++|++|++.
T Consensus       503 ~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          503 DSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             eCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence            888788888888776543 34566889999999999999999999999999999999999999864

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.97  E-value=3.7e-31  Score=202.33  Aligned_cols=134  Identities=28%  Similarity=0.374  Sum_probs=117.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++|+.|.+.|. +|||+|||+++++++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++. +...++.
T Consensus       392 Y~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~  469 (529)
T 2v7b_A          392 YWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVK  469 (529)
T ss_dssp             BTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEE
T ss_pred             cCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceE
Confidence            8999999999996 8999999999999999999999999999999999999999999999999999999998 5556677


Q ss_pred             eEEEEEeCCCCcc---CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           81 PVAFVVRSNGFEL---TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        81 ~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      +++++++..+...   ..+++.++++++|+.+++|..++++++||+|++||++|++|++
T Consensus       470 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          470 TRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             EEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            8888887665321   3467999999999999999999999999999999999999985

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.97  E-value=3e-31  Score=206.45  Aligned_cols=134  Identities=22%  Similarity=0.340  Sum_probs=110.8

Q ss_pred             CCCChhhhhcccCCC-------CeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec
Q 038977            1 YLNDPEATAATIDVE-------GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK   73 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~-------~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~   73 (145)
                      |||+|+.|++.|..+       +||+|||++++++||.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.+
T Consensus       374 Y~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~  453 (620)
T 4dg8_A          374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRE  453 (620)
T ss_dssp             ETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred             cCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEe
Confidence            899999999999532       7999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           74 DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +...+..++.++ ...      ..+.+.+.++|+.+++|..+++++.+|+|++||++|++|++.+.+.
T Consensus       454 ~~~~~~lv~~~~-~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~  514 (620)
T 4dg8_A          454 RNGVKQLLCAWT-GKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP  514 (620)
T ss_dssp             ETTEEEEEEEEE-ECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred             CCCceEEEEEEe-cCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence            764444444433 221      1234556778999999999999999999999999999999877553

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.97  E-value=2.5e-30  Score=214.34  Aligned_cols=135  Identities=26%  Similarity=0.399  Sum_probs=124.3

Q ss_pred             CCCChhhhhcccC------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecC
Q 038977            1 YLNDPEATAATID------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD   74 (145)
Q Consensus         1 Y~~~~~~t~~~~~------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~   74 (145)
                      |||+|+.|+++|.      +++||+|||++++++||.++++||+|++||++|.+|+|.+||..|.++|+|.++++++.++
T Consensus       817 Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~  896 (1304)
T 2vsq_A          817 YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRH  896 (1304)
T ss_dssp             BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred             ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEec
Confidence            9999999999993      3569999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977           75 EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK  137 (145)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~  137 (145)
                      ..++..++++++...  ..+.+++.+++++.||.|++|..+++++.||+|++||++|++|.+.
T Consensus       897 ~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          897 ESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             SSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred             CCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence            877788888887654  4567899999999999999999999999999999999999988653

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.96  E-value=4.6e-31  Score=203.06  Aligned_cols=140  Identities=21%  Similarity=0.259  Sum_probs=33.9

Q ss_pred             CCCChhhhhcccC-CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC-CCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATID-VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH-PSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~-~~v~~~~~~~~~~~~~~   78 (145)
                      ||++|+.|...+. +++||+|||++++|++|+++++||+||+||++|.+|+|.+||+.|.++ +.+.+++++...++..+
T Consensus       388 Y~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~  467 (562)
T 3ite_A          388 YLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTS  467 (562)
T ss_dssp             ESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred             hCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCc
Confidence            8999999987763 234999999999999999999999999999999999999999999998 77788888877777666


Q ss_pred             ceeEEEEEeCCCCcc-------------CHHHHHHHHHhccccccCceEEEEeccCCCC-CCCcccHHHHHHHHHc
Q 038977           79 EVPVAFVVRSNGFEL-------------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKS-PSGKILRKDLIAKLAS  140 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~-------------~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t-~~gK~~r~~l~~~~~~  140 (145)
                      +..+++++...+...             ..+++.++++++|+.+++|+.++++++||+| ++||++|++|++++.+
T Consensus       468 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~  543 (562)
T 3ite_A          468 KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT  543 (562)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence            655544443322221             1347899999999999999999999999998 9999999999998864

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.96  E-value=8.1e-29  Score=181.75  Aligned_cols=127  Identities=20%  Similarity=0.256  Sum_probs=108.3

Q ss_pred             CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHh---cCCCcceEEEE-eecCCCCCceeEEEEEeC
Q 038977           13 DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL---SHPSIADATVV-PQKDEVAGEVPVAFVVRS   88 (145)
Q Consensus        13 ~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~---~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~   88 (145)
                      ..+|||+|||++++|++| ++++||+||+||++|++|+|.+||+.|.   .+|.|.+++++ ..++...++.+++++...
T Consensus       225 ~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~  303 (358)
T 4gs5_A          225 TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA  303 (358)
T ss_dssp             GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred             ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence            458999999999999988 6677999999999999999999998775   46889887765 666777777877777654


Q ss_pred             CCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           89 NGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        89 ~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      . .....+++.++++++|+.+++|+.++++++||+|++||++|++|++++.+.
T Consensus       304 ~-~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~  355 (358)
T 4gs5_A          304 M-PEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS  355 (358)
T ss_dssp             C-CHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred             C-CCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence            3 344567899999999999999999999999999999999999999988764

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.95  E-value=2.3e-29  Score=194.29  Aligned_cols=140  Identities=24%  Similarity=0.342  Sum_probs=118.1

Q ss_pred             CCCChhhhhcccCC------CC--eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHH-hcCCCcc--eEEE
Q 038977            1 YLNDPEATAATIDV------EG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL-LSHPSIA--DATV   69 (145)
Q Consensus         1 Y~~~~~~t~~~~~~------~~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l-~~~~~v~--~~~~   69 (145)
                      ||++|+.|++.|..      +|  ||+|||+|++| +|.++++||+||+||++|.+|+|.+||+.| ..++.|.  ++.+
T Consensus       413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v  491 (590)
T 3kxw_A          413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAA  491 (590)
T ss_dssp             BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEE
T ss_pred             ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEE
Confidence            99999999999953      14  99999999998 999999999999999999999999999999 7789998  7888


Q ss_pred             EeecCCCCCceeEEEEEeCCCC--ccCHHHHHHHHHhcccc-ccCce-EEEEe--ccCCCCCCCcccHHHHHHHHHccC
Q 038977           70 VPQKDEVAGEVPVAFVVRSNGF--ELTEEAIKEYIAKQVVF-YKRLH-KVHFV--HAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~~~~v--~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      ++.++.. ++.++++++...+.  ..+.+++.+.+++.++. +..|. .+.++  +.||+|++||++|++|++++.++.
T Consensus       492 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~  569 (590)
T 3kxw_A          492 FVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKT  569 (590)
T ss_dssp             EEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTC
T ss_pred             EEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCC
Confidence            8887665 56777777776653  34567888999998885 77775 56665  799999999999999999997653

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.90  E-value=3.9e-24  Score=160.10  Aligned_cols=122  Identities=20%  Similarity=0.234  Sum_probs=100.7

Q ss_pred             hhcccCCCCeeecCceEEEcCCC------e---EEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            8 TAATIDVEGLLHTGDIGYVDHDD------E---VFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         8 t~~~~~~~~~~~TGDl~~~~~~g------~---l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      +...| ..+||+|||+++++++|      .   ++++||.||+||++|.+|+|.+||+.|.++|.|.++++++..+...+
T Consensus       292 ~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~  370 (436)
T 3qov_A          292 DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ  370 (436)
T ss_dssp             SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred             CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence            34455 47899999999999998      4   69999999999999999999999999999999999999988887777


Q ss_pred             ceeEEEEEeCCCCccC----HHHHHHHHHhccccc-cCceEEEEec--cCCCCCCCcccHH
Q 038977           79 EVPVAFVVRSNGFELT----EEAIKEYIAKQVVFY-KRLHKVHFVH--AIPKSPSGKILRK  132 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~~~~v~--~~p~t~~gK~~r~  132 (145)
                      +.+++++++. +...+    .+++.+.+++.++.+ +.|..+.+++  .||+|+ ||++|.
T Consensus       371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV  429 (436)
T ss_dssp             EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred             cEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence            8888998887 55444    578899999999999 8999999998  999999 999874

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.90  E-value=3.5e-24  Score=160.62  Aligned_cols=125  Identities=15%  Similarity=0.152  Sum_probs=104.8

Q ss_pred             hhcccCCCCeeecCceEEEcCC-CeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCcee
Q 038977            8 TAATIDVEGLLHTGDIGYVDHD-DEV-----FIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVP   81 (145)
Q Consensus         8 t~~~~~~~~~~~TGDl~~~~~~-g~l-----~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~   81 (145)
                      |...| ..+||+|||+++++++ |.+     ++.||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.+
T Consensus       299 t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~  377 (443)
T 2y4o_A          299 TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRL  377 (443)
T ss_dssp             SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEE
T ss_pred             CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceE
Confidence            34455 4789999999999999 986     8999999999999999999999999999999999888877666556778


Q ss_pred             EEEEEeCC--C---CccCHHHHHHHHHhcccccc-CceEEEEe--ccCCCCCCCcccHHH
Q 038977           82 VAFVVRSN--G---FELTEEAIKEYIAKQVVFYK-RLHKVHFV--HAIPKSPSGKILRKD  133 (145)
Q Consensus        82 ~~~v~~~~--~---~~~~~~~l~~~l~~~l~~~~-~p~~~~~v--~~~p~t~~gK~~r~~  133 (145)
                      ++++++..  +   ...+.+++.+.+++.++.++ .|..+.++  ++||+|++||++|..
T Consensus       378 ~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~  437 (443)
T 2y4o_A          378 DLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI  437 (443)
T ss_dssp             EEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred             EEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence            88887764  2   22345788999999998874 88888888  599999999999864

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.89  E-value=9.6e-24  Score=158.01  Aligned_cols=124  Identities=19%  Similarity=0.148  Sum_probs=104.6

Q ss_pred             hhcccCCCCeeecCceEEEcC-CCeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCcee
Q 038977            8 TAATIDVEGLLHTGDIGYVDH-DDEV-----FIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVP   81 (145)
Q Consensus         8 t~~~~~~~~~~~TGDl~~~~~-~g~l-----~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~   81 (145)
                      |.+.| ..+||+|||++++++ +|.+     ++.||.||+|+++|.+|+|.+||+.|.++|.|.++++++.++...++.+
T Consensus       297 t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l  375 (437)
T 2y27_A          297 TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVL  375 (437)
T ss_dssp             SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEE
T ss_pred             CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceE
Confidence            34455 478999999999999 6985     9999999999999999999999999999999998888877766666788


Q ss_pred             EEEEEeCCCCc---cCHHHHHHHHHhccccc-cCceEEEEe--ccCCCCCCCcccHHH
Q 038977           82 VAFVVRSNGFE---LTEEAIKEYIAKQVVFY-KRLHKVHFV--HAIPKSPSGKILRKD  133 (145)
Q Consensus        82 ~~~v~~~~~~~---~~~~~l~~~l~~~l~~~-~~p~~~~~v--~~~p~t~~gK~~r~~  133 (145)
                      ++++++..+..   .+.+++.+.+++.++.+ ..|..+.++  ++||+|+ ||++|..
T Consensus       376 ~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          376 TLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             EEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred             EEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence            88888776543   34478899999999988 588888888  5999999 9999853

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.75  E-value=5.6e-18  Score=104.53  Aligned_cols=95  Identities=24%  Similarity=0.323  Sum_probs=72.9

Q ss_pred             eecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCccCH---HHHHHHHHhccccc-cC
Q 038977           36 DRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE---EAIKEYIAKQVVFY-KR  111 (145)
Q Consensus        36 GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~-~~  111 (145)
                      .|+||||+++|.||+|.+||+.+.++|+|.++.+++.++..+++.+.+++....+...+.   +++.+.+.+.+... ..
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv   80 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV   80 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence            389999999999999999999999999999999999988888888888888877654443   45555666655443 23


Q ss_pred             ceEEEEe--ccCCCCCCCcccH
Q 038977          112 LHKVHFV--HAIPKSPSGKILR  131 (145)
Q Consensus       112 p~~~~~v--~~~p~t~~gK~~r  131 (145)
                      +..+.++  ++||+| +||++|
T Consensus        81 ~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           81 TPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             CCEEEEECTTCSCCC----CCC
T ss_pred             ccceEEEcCCeecCC-CCCcch
Confidence            4456666  579999 799987

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.69  E-value=9e-05  Score=57.61  Aligned_cols=44  Identities=18%  Similarity=0.208  Sum_probs=39.8

Q ss_pred             eeecCceEEEcC----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977           17 LLHTGDIGYVDH----DDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS   60 (145)
Q Consensus        17 ~~~TGDl~~~~~----~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~   60 (145)
                      -|++||+++++.    ...+.|.||.++++++.|+++++.+|++++.+
T Consensus       411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence            389999999963    46899999999999999999999999999884

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.54  E-value=4.6e-05  Score=59.02  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=40.6

Q ss_pred             eeecCceEEEcC----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q 038977           17 LLHTGDIGYVDH----DDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH   61 (145)
Q Consensus        17 ~~~TGDl~~~~~----~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~   61 (145)
                      .|++||+++++.    ...+.|.||.++++++.|+++++.++++++.+.
T Consensus       399 RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          399 RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred             eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence            489999999975    357999999999999999999999999999854

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=97.54  E-value=0.00038  Score=53.88  Aligned_cols=44  Identities=14%  Similarity=0.067  Sum_probs=39.4

Q ss_pred             eeecCceEEEcC----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977           17 LLHTGDIGYVDH----DDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS   60 (145)
Q Consensus        17 ~~~TGDl~~~~~----~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~   60 (145)
                      .|++||+++++.    ...+.|.||.++++++.|+++++.+|++++..
T Consensus       406 RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          406 RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES  453 (581)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence            499999999964    25799999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-45
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	8e-43
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-41
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-39
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	8e-39
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-38
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	4e-33

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  152 bits (385), Expect = 3e-45
 Identities = 67/135 (49%), Positives = 93/135 (68%), Gaps = 1/135 (0%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y+N+PEAT A ID +G LH+GDI Y D D+  FIVDR+K +IK+KG+QV PAE+E++LL 
Sbjct: 398 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 457

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK-VHFVH 119
           HP+I DA V    D+ AGE+P A VV  +G  +TE+ I +Y+A QV   K+L   V FV 
Sbjct: 458 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 517

Query: 120 AIPKSPSGKILRKDL 134
            +PK  +GK+  + +
Sbjct: 518 EVPKGLTGKLDARKI 532

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  145 bits (367), Expect = 8e-43
 Identities = 39/140 (27%), Positives = 65/140 (46%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y  + EAT + +  +G   TGDI   D +  V I DR+K++IK  G  +   ++E  L+ 
Sbjct: 390 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 449

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP + +A VV        E P+A VV        EE  +  +      ++      F   
Sbjct: 450 HPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEE 509

Query: 121 IPKSPSGKILRKDLIAKLAS 140
           IP++ +GK L++ L  +  +
Sbjct: 510 IPRTSAGKFLKRALREQYKN 529

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  144 bits (363), Expect = 1e-41
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 1   YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL 58
              D E    T     + +  +GD    D D   +I  RV +++   G ++  AEIE+ L
Sbjct: 473 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 532

Query: 59  LSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKV 115
           ++HP IA+A VV     + G+   A+V  ++G E + E    ++ ++ K++        +
Sbjct: 533 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVL 592

Query: 116 HFVHAIPKSPSGKILRKDL 134
           H+  ++PK+ SGKI+R+ L
Sbjct: 593 HWTDSLPKTRSGKIMRRIL 611

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  135 bits (341), Expect = 3e-39
 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           YLN P+ATA  +  +G   T D+     +  V I+ RV ++I   G  + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
            P + +  V+   D+  G+   A VV   G  L+ +A+  +  + ++  +KR  +   + 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483

Query: 120 AIPKSPSGKILRKDLIAKLA 139
            +PK+   K+LR+ L+ +++
Sbjct: 484 QLPKNALNKVLRRQLVQQVS 503

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  136 bits (342), Expect = 8e-39
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 1   YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL 58
              + +    T      G   TGD    D D  ++I+ RV +++   G ++  AEIEA +
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI 522

Query: 59  LSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE----------EAIKEYIAKQVVF 108
           +  P +A+  VV   D++ G+   AFVV  N    +           + +   + K +  
Sbjct: 523 IEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGP 582

Query: 109 YKRLHKVHFVHAIPKSPSGKILRKDL 134
           +     +  V  +PK+ SGKI+R+ L
Sbjct: 583 FAAPKLIILVDDLPKTRSGKIMRRIL 608

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  134 bits (337), Expect = 1e-38
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 1   YLNDPEATAATI------DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
           Y   PE T+           E L  TGD      D  +  + R+   +K +G +V   E+
Sbjct: 370 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEV 429

Query: 55  EALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK 114
           E++LL H  I++  V   KD        A+ V      +  E ++++ ++++  Y     
Sbjct: 430 ESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSY 487

Query: 115 VHFVHAIPKSPSGKILRKDL 134
              +  +P + +GKI RK L
Sbjct: 488 FIQLDKMPLTSNGKIDRKQL 507

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  119 bits (299), Expect = 4e-33
 Identities = 39/139 (28%), Positives = 65/139 (46%)

Query: 1   YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
           Y    E  AA+   +G   TGDI  +  D  + +  R K+ I   G +V   E+E  LL+
Sbjct: 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451

Query: 61  HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
           HP++ DA +V   D+  GE    F++  +      E       + +  YK   +V FV +
Sbjct: 452 HPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVES 511

Query: 121 IPKSPSGKILRKDLIAKLA 139
            P++  GK+ +K L   ++
Sbjct: 512 FPQTGVGKVSKKALREAIS 530

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.98
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.98

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-34  Score=222.64  Aligned_cols=141  Identities=28%  Similarity=0.426  Sum_probs=125.1

Q ss_pred             CCCChhhhhccc--CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~--~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++++.|.+.|  +.+|||+|||+|++|++|+++++||+||+||++|++|+|.+||+.|.++|.|.++++++.++...+
T Consensus       463 y~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~g  542 (640)
T d1ry2a_         463 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG  542 (640)
T ss_dssp             ETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTS
T ss_pred             cccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCC
Confidence            899999998887  456999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             ceeEEEEEeCCCCccC----------HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFELT----------EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~----------~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.++++|++.++....          .+++.+.++++|+.+++|+.++++++||+|++||++|++|++++..+
T Consensus       543 e~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  615 (640)
T d1ry2a_         543 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE  615 (640)
T ss_dssp             CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             eEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCC
Confidence            9999999887764322          25688889999999999999999999999999999999999987543

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=2e-33  Score=209.37  Aligned_cols=137  Identities=28%  Similarity=0.499  Sum_probs=128.9

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..|.+.|. +|||+|||+|+++++|.++++||+||+||++|.+|+|.+||+.+.++|+|.++++++.++...++.
T Consensus       365 ~~~~~~~t~~~~~-~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~  443 (503)
T d3cw9a1         365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS  443 (503)
T ss_dssp             BTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             ccCChhhhHHHhc-CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeE
Confidence            6889999999995 899999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHH-hccccccCceEEEEeccCCCCCCCcccHHHHHHHH
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIA-KQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKL  138 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~  138 (145)
                      +++++++..+...+.+++.+.++ ++++.+++|..++++++||+|++||++|++|++++
T Consensus       444 ~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         444 VTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            99999998888888899999994 67999999999999999999999999999999876

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.2e-33  Score=217.38  Aligned_cols=141  Identities=28%  Similarity=0.453  Sum_probs=130.2

Q ss_pred             CCCChhhhhccc--CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977            1 YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG   78 (145)
Q Consensus         1 Y~~~~~~t~~~~--~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~   78 (145)
                      ||++++.+.+.+  ..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...+
T Consensus       473 ~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~g  552 (643)
T d1pg4a_         473 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG  552 (643)
T ss_dssp             ETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTE
T ss_pred             ccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCC
Confidence            789998877665  458999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ceeEEEEEeCCCCccCH---HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           79 EVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        79 ~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +.++++|++..+...+.   .++.++++++|+++++|+.++++++||+|++||++|+.|+++++.+
T Consensus       553 e~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  618 (643)
T d1pg4a_         553 QAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  618 (643)
T ss_dssp             EEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             eEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence            99999999988776664   4789999999999999999999999999999999999999998654

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2e-33  Score=212.12  Aligned_cols=142  Identities=47%  Similarity=0.742  Sum_probs=123.1

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.+...+..+|||+|||+++++++|.+++.||.||+||++|++|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       398 Y~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~  477 (541)
T d1lcia_         398 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL  477 (541)
T ss_dssp             ETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred             eCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEE
Confidence            89999999999988999999999999999999999999999999999999999999999999999999999988888889


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhcccccc-CceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYK-RLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++++.++...+.+++.+++++++.++. .|..++++++||+|++||++|++|++++.++.
T Consensus       478 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  540 (541)
T d1lcia_         478 PAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  540 (541)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence            999999988888888999999999988775 68899999999999999999999999998753

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.6e-34  Score=215.45  Aligned_cols=141  Identities=28%  Similarity=0.425  Sum_probs=93.5

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||++++.|.+.|..+|||+|||+++++++|.+++.||+|++||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus       390 Y~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~  469 (534)
T d1v25a_         390 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER  469 (534)
T ss_dssp             CBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEE
T ss_pred             ecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeE
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS  141 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~  141 (145)
                      +++++++........+.+...+++.++.+++|..+++++++|+|++||++|++|+++|.+-
T Consensus       470 l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~  530 (534)
T d1v25a_         470 PLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY  530 (534)
T ss_dssp             EEECC-------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence            8888877654333333334447778999999999999999999999999999999998753

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.98  E-value=3.2e-32  Score=205.10  Aligned_cols=141  Identities=28%  Similarity=0.504  Sum_probs=131.0

Q ss_pred             CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977            1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV   80 (145)
Q Consensus         1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~   80 (145)
                      ||+++..+...+..+|||+|||++++++||.+++.||+||++|++|.+|+|.+||+.|.++|+|.++++++.++...++.
T Consensus       392 Y~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~  471 (536)
T d1mdba_         392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGER  471 (536)
T ss_dssp             CTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             cccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeE
Confidence            89999999999998999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977           81 PVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM  142 (145)
Q Consensus        81 ~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~  142 (145)
                      +++++++.++ ..+..++.+.++++ ++.+++|..++++++||+|++||++|++|++++.+++
T Consensus       472 ~~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l  533 (536)
T d1mdba_         472 SCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL  533 (536)
T ss_dssp             EEEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             EEEEEEECCC-CCCHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHH
Confidence            8888887654 45678899999875 9999999999999999999999999999999997654

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.98  E-value=2.1e-32  Score=205.63  Aligned_cols=134  Identities=25%  Similarity=0.377  Sum_probs=125.2

Q ss_pred             CCCChhhhhccc------CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecC
Q 038977            1 YLNDPEATAATI------DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD   74 (145)
Q Consensus         1 Y~~~~~~t~~~~------~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~   74 (145)
                      ||+++..+...|      +++|||+|||+|++|++|.+++.||++|+|+++|++|+|.+||+.|.++++|.++++++.++
T Consensus       370 Y~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~  449 (514)
T d1amua_         370 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD  449 (514)
T ss_dssp             ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred             ccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEC
Confidence            899999988887      45789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977           75 EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA  136 (145)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~  136 (145)
                      ...++.+++++++.++  .+.+++.+.++++|+.+++|..++++++||+|++||++|++|++
T Consensus       450 ~~~g~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         450 HQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             TTSCEEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             CCCCEEEEEEEEcCCC--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence            8888899988888765  56788999999999999999999999999999999999999875