Citrus Sinensis ID: 038987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MRNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQTALAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMGQNIGHSKIICGPITNALDTISRKRNRASNISSESNSVDLEAGTSTSEPMLNHNARTHKSCSGSVESSGALSSAFMRNSGATHNPEEPAMWECKACTFLNHGCGSVPHQGDASANDRVWTCKFWTLENCVKLDKCSRVSK
Secondary Structure (PSIPRED)
ccccccEEcEEcEEcccccccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEcccccccEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHcccccHccccccHccHHHHHHHHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHcccccccccEEccEEEccccccccccccccc
Coil and Loop (DISEMBL)
MRNHKWKVKLLSEMHSknalgsnlgagVHIKLLLRKLnrdreslpfhEVLDTMLHElchndiaphdaKFYKLWEELREECDELRSkgitgvgsfdrpgrvlggvspqpplsslpQTALAAAEKRahsnsllpsgpkllggdrfvmydlspVQAAAMAVEKRLQYDLWCASQDLvdmgqnighskiicgpitnaLDTISRkrnrasnissesnsvdleagtstsepmlnhnarthkscsgsvessgalSSAFMrnsgathnpeepamweckactflnhgcgsvphqgdasandrvwtckfwtlencvkldkcsrvsk
Flexible Loop (DISEMBL)
MRNHKWKVKLLSEMHSknalgsnlgaGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGitgvgsfdrpgrVLGGVSPQPPLSSLPQTALAAAEKRahsnsllpsgpkLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMGQNIGHSKIICGPITNALDTISRKRnrasnissesnsvdleagtstsepmlNHNARTHKSCSGSVESSGALSSAFMRNSGATHNPEEPAMWECKACTFLNHGCGSVPHQGDASANDRVWTCKFWtlencvkldkcsrvsk
Low Complexity Region (SEG)
MRNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGGVspqpplsslpqtalaaaEKRAHSNsllpsgpkllggDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMGQNIGHSKIICGPITNALDTISRKRNRASNISSESNSVDLEAGTSTSEPMLNHNARTHKscsgsvessgalssaFMRNSGATHNPEEPAMWECKACTFLNHGCGSVPHQGDASANDRVWTCKFWTLENCVKLDKCSRVSK
Disordered region (IsUnstruct)
******************ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGS*******************************************LLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMGQNIGHSKIICGPITNALDT********************************************************************AMWECKACTFLNHGCGSVPHQGDASANDRVWTCKFWTLENCVKLDKC*****
Disordered Region (DISOPRED)
***HKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGS**************************************************************************************************N****I****N*********************************************************************CTFL*********************CKFWTLENCVKLDKCSRVSK
Disordered Region (DISEMBL)
MRNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGGVSPQPPL*****************NSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMGQNIGHSKIICGPITNALDTISRK*********************TSEPMLNHNAR**************LSSAFMRNSGATHNPEEPAMWECKACTFLNHGCGSVPHQGDASANDRVWTCKFWTLENCVKLDKCSRVSK
Disordered Region (DISPRO)
***HKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGR*LG*VSPQPPLSSLPQTALAAAEKR*********************************************************************L***********************************************************************MWECKACTFLNHGCGSVPHQGDASANDRVWTCKFWTLENCVKLDKCSRV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQTALAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMGQNIGHSKIICGPITNALDTISRKRNRASNISSESNSVDLEAGTSTSEPMLNHNARTHKSCSGSVESSGALSSAFMRNSGATHNPEEPAMWECKACTFLNHGCGSVPHQGDASANDRVWTCKFWTLENCVKLDKCSRVSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
P38838	269	DNA damage response prote	yes	no	0.512	0.602	0.335	8e-11
O94580	282	Ubiquitin and WLM domain-	yes	no	0.389	0.436	0.345	1e-08
Q9P7B5	283	DNA damage response prote	no	no	0.291	0.325	0.357	1e-06

>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           M+ + +KV  L E + ++   LG N+  G  I L LR    + + LP   ++ TMLHEL 
Sbjct: 59  MKENHFKVTNLVEFYPRDQRLLGMNVNHGSKIMLRLRCSTDEFQFLPMECIMGTMLHELT 118

Query: 59  HNDIAPHDAKFYKLWEEL--REECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQT 116
           HN   PHD KFY   +EL  R+   E R    T +G+  R G      S + P++ +  T
Sbjct: 119 HNLFGPHDKKFYNKLDELIGRQWVIEQRGLYDTFLGNGQRLGGRANLRSNRYPMTGI-ST 177

Query: 117 ALAAAEKRAHS---NSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCA 169
                 KR       SL P G   +  DR      SP + AA A E+R + D WC 
Sbjct: 178 NTGIVRKRGKGVKLGSLHPEGISSI--DR----GNSPRELAAFAAERRYRDDRWCG 227

Involved in DNA damage response and processing of stalled or collapsed replication forks. May be involved in a sumoylation pathway.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=4 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 19/142 (13%)

Query: 1   MRNHKWKVKLLSEM-------HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTM 53
           M +H+W V LLSEM       H    LG N   G HI+L LR  +R      +  V  T+
Sbjct: 142 MDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRLRT-DRYDGFRDYKTVKSTL 200

Query: 54  LHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSL 113
           +HEL HN    HD+ F++L+ +L +E D     G  G    DR        +PQ      
Sbjct: 201 IHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYVSDR-----ASYTPQQDNDDE 255

Query: 114 PQT------ALAAAEKRAHSNS 129
            Q        LAAAE+R  S S
Sbjct: 256 DQKNHRRDLLLAAAERRKQSGS 277

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 1   MRNHKWKVKLLSEM-HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCH 59
           M+ H + V  L E+ ++    G N   G  I+L+LR  +     LPF  V+D  LHELCH
Sbjct: 64  MKEHGFGVTSLDEVAYNAKFWGRNWNKGECIELVLR--DASNRWLPFEFVMDVFLHELCH 121

Query: 60  NDIAPHDAKFYKLWEELREECDELRSKGITGVGSF 94
               PHD +F+     LR     L +KG  G G +
Sbjct: 122 IWQGPHDRRFFSHLSTLRAALIALYAKGYKGPGKY 156

Involved in DNA damage response and processing of stalled or collapsed replication forks. May be involved in a sumoylation pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
255563536	404	conserved hypothetical protein [Ricinus	0.993	0.777	0.504	2e-76
356566507	409	PREDICTED: uncharacterized protein LOC10	0.981	0.757	0.484	5e-73
225461874	366	PREDICTED: DNA damage response protein W	0.889	0.767	0.494	8e-72
224116656	388	predicted protein [Populus trichocarpa]	0.965	0.786	0.470	2e-68
297847960	401	zinc ion binding protein [Arabidopsis ly	0.984	0.775	0.464	4e-66
42562774	404	zinc ion binding protein [Arabidopsis th	0.984	0.769	0.444	2e-62
449465168	423	PREDICTED: uncharacterized protein LOC10	0.984	0.735	0.441	3e-61
413952857	346	putative uncharacterized protein hypro4	0.870	0.794	0.444	2e-60
255564031	326	conserved hypothetical protein [Ricinus	0.825	0.800	0.419	4e-58
8778309	450	F14J16.17 [Arabidopsis thaliana]	0.958	0.673	0.429	4e-57

>gi|255563536|ref|XP_002522770.1| conserved hypothetical protein [Ricinus communis] gi|223538008|gb|EEF39621.1| conserved hypothetical protein [Ricinus communis]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/351 (50%), Positives = 215/351 (61%), Gaps = 37/351 (10%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           MR HKW+VK+LSE   KN   LG N+G GVH+KL LR+ NRD +  PF  VLDTMLHELC
Sbjct: 38  MRKHKWRVKVLSEFCPKNPALLGLNVGGGVHVKLRLRRPNRDWDFFPFDMVLDTMLHELC 97

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+ELR+EC+EL SKGITG    FD PGR LGG S QPPLSSLP+TA
Sbjct: 98  HNVHGPHNANFYKLWDELRKECEELLSKGITGSAEGFDMPGRRLGGFSCQPPLSSLPKTA 157

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
           LAAAEKRA   SLLPSGPK LGGD  +M  LSP+QAAAMA E+RLQ ++WC SQ   ++ 
Sbjct: 158 LAAAEKRAKLGSLLPSGPKRLGGDNTIMIALSPIQAAAMAAERRLQDEIWCGSQS-AEVS 216

Query: 178 QNIGHSKIICGPITNALDTI-------SRKRNRA-SNISS--------ESNSVDLEAGTS 221
           ++  +S  I   + +A  T         RKR+R  SN +         ESN VDL    S
Sbjct: 217 EDGENSTDIAEDLVDARQTARSSRPDNGRKRSRELSNTTDSQSFNGHLESNIVDLSTDVS 276

Query: 222 TSEPMLNHNARTHKSCSGSVESSGALSSAFMRNSGAT----------HNPEEPAMWECKA 271
           TS  + +      K  + ++  S +  SAF+   G +          H+ EE AMWEC A
Sbjct: 277 TSGSIRDRGTNPKKR-TWNLYKSASSDSAFINLIGGSSLGSIANHEIHSSEELAMWECAA 335

Query: 272 CTFLNHGCG------SVPHQGDASANDRVWTCKFWTLENCVKLDKCSRVSK 316
           CT LN          S     DASA  ++W+CKF TLEN VKLDKCS  S+
Sbjct: 336 CTLLNPPLAPICNLCSTEKPKDASAKYKIWSCKFCTLENSVKLDKCSACSE 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566507|ref|XP_003551472.1| PREDICTED: uncharacterized protein LOC100795976 [Glycine max]

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 170/351 (48%), Positives = 208/351 (59%), Gaps = 41/351 (11%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           MR HKW++KLLSEM   N   LG N+GAG+H+KL LR+ NRD +  PF +VLDTMLHELC
Sbjct: 39  MRKHKWRIKLLSEMCPSNPRLLGLNVGAGIHVKLRLRRPNRDLDFYPFDQVLDTMLHELC 98

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+ELR+EC+EL +KGI+G G  FD PGR LGG S QPPLSSL +TA
Sbjct: 99  HNAHGPHNANFYKLWDELRKECEELMAKGISGAGEGFDLPGRRLGGYSRQPPLSSLRKTA 158

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQ------ 171
           L AAEKR    SLLPSGPK LGGD  +M  LSPVQAAAMA E+RLQ D+WC SQ      
Sbjct: 159 LEAAEKRVQLGSLLPSGPKRLGGDSVIMRALSPVQAAAMAAERRLQDDVWCGSQSCENLD 218

Query: 172 ----------DLVDMGQNIGHSKIICGPITNALDTISRKRNRASNISSE-------SNSV 214
                     ++V  G+N+G S+      T   + +SRKR++ +N S         S  V
Sbjct: 219 HEDVDYEVAENIVHKGENVGSSRQTDNS-TLPSNLLSRKRSQDTNSSLPAKSSSSTSEFV 277

Query: 215 DLEAGTSTSEPMLNHNARTHKSCSGSVESSGALSS------AFMRNSGATHNPEEPAMWE 268
           DL   T  S P   H     + C GS   S + S+      +   +S +  + EE  MWE
Sbjct: 278 DLTMDTPKSRPDKEHQTGPKRRCGGSESFSHSQSNYQAGSSSANLSSVSGRHSEESGMWE 337

Query: 269 CKACTFLNHG-------CGSVPHQGDASANDRVWTCKFWTLENCVKLDKCS 312
           C  CT LN         CG+     D S     W+CKF TLEN VKL+KCS
Sbjct: 338 CTMCTLLNKRLAPICELCGT-QQPKDFSTKCNTWSCKFCTLENNVKLEKCS 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461874|ref|XP_002264382.1| PREDICTED: DNA damage response protein WSS1 [Vitis vinifera] gi|296089891|emb|CBI39710.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (707), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 166/336 (49%), Positives = 194/336 (57%), Gaps = 55/336 (16%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           MR HKW+VKLLSE    N   LG N+G G+H+KL LR+ NRD +  PF ++LDTMLHELC
Sbjct: 38  MRKHKWRVKLLSEFCPNNPALLGLNVGGGIHVKLRLRRPNRDWDFFPFDQILDTMLHELC 97

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVG-SFDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+E+R+EC+EL +KGITG G  FD PGR LGG S QPP+SSL QTA
Sbjct: 98  HNVHGPHNADFYKLWDEIRKECEELMAKGITGTGEGFDLPGRRLGGFSRQPPVSSLRQTA 157

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQ------ 171
           LAAAEKRA   SL+PSGPK LGGD  +M  LSP+QAAAMA E+RLQ D+WC SQ      
Sbjct: 158 LAAAEKRARLGSLVPSGPKRLGGDSSIMDALSPIQAAAMAAERRLQDDIWCGSQSCEASE 217

Query: 172 ------DLVD----MGQNIGHSKIICGPITNALDTISRKRNRASNISSESNSVDLEAGTS 221
                 DL D      Q+ G S    G     LD  SRKR+  +     S+ VDL    S
Sbjct: 218 GGESSSDLSDRHVHREQSAGMSSHGSGRGALDLDVTSRKRSHETG----SSFVDLSKCAS 273

Query: 222 TSEPMLNHNARTHKSCSGSVESSGALSSAFMRNSGATHNPEEPAMWECKACTFLNHGCG- 280
            S  +L HN                          ATHN EE  MWEC  CT LN     
Sbjct: 274 ASGSVLGHN--------------------------ATHNTEESIMWECGICTLLNPPLAP 307

Query: 281 -----SVPHQGDASANDRVWTCKFWTLENCVKLDKC 311
                S     D     +VW+CKF TLEN V+LDKC
Sbjct: 308 ICKVCSTEKPKDVGIKYKVWSCKFCTLENNVELDKC 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116656|ref|XP_002317357.1| predicted protein [Populus trichocarpa] gi|222860422|gb|EEE97969.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/334 (47%), Positives = 205/334 (61%), Gaps = 29/334 (8%)

Query: 1   MRNHKWKVKLLSEM--HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           MR H W+VKLLSE   ++++ LG N+G GVH+KL LR+ NRD +  PFH+VLDTMLHELC
Sbjct: 38  MRKHNWRVKLLSEFCPNNRSLLGLNVGGGVHVKLRLRRPNRDLDFFPFHQVLDTMLHELC 97

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+ELR+EC+EL  KGITG G  FD PGR LGG S QP LSSL +TA
Sbjct: 98  HNVHGPHNANFYKLWDELRKECEELIFKGITGTGEGFDLPGRRLGGFSCQPALSSLRKTA 157

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
           LAAAEKRA   S+LPS PK LGGD  +M  LSP+QAAAMA E+RLQ ++WC S  L +  
Sbjct: 158 LAAAEKRAKLGSMLPSQPKRLGGDSTIMAALSPIQAAAMAAERRLQDEIWCGSL-LAETD 216

Query: 178 QNIGH----SKIICGPITNALDTISRKRNRASNISS---------ESNSVDLEAGTSTSE 224
           +  G     S I   P++    T S ++   ++            E + +DL +  S   
Sbjct: 217 ETSGDGETSSDIAENPVSMGEFTESSRKKFCNSYKDPFPDTTTHIEGSFIDLTS-DSIFG 275

Query: 225 PMLNHNARTHKSCSGSVESSGALSSAFMRNSGATHNPEEPAMWECKACTFLN-------H 277
              N + R H   +  + S  +  S   R++   H PE  ++WEC  CT LN        
Sbjct: 276 STTNLDTR-HVLEAPPLTSDSSFGSICNRDTA--HTPEASSLWECGTCTLLNPQLAPICE 332

Query: 278 GCGSVPHQGDASANDRVWTCKFWTLENCVKLDKC 311
            CG+   + DAS  +++W+CKF TLENC+KLD+C
Sbjct: 333 LCGAQKPK-DASTKNKIWSCKFCTLENCLKLDRC 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847960|ref|XP_002891861.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297337703|gb|EFH68120.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 158/340 (46%), Positives = 197/340 (57%), Gaps = 29/340 (8%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           M   KW+VKLLSE   KN   LG N+  GV +KL LR++N D E L +HE+LDTMLHELC
Sbjct: 39  MTRRKWRVKLLSEFCPKNPMLLGVNVNRGVQVKLRLRRVNHDGEFLSYHEILDTMLHELC 98

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+ELR+EC+EL SKGITG G  FD PG+ LGG+S QPPLSSL  TA
Sbjct: 99  HNAHGPHNANFYKLWDELRKECEELMSKGITGTGQGFDIPGKRLGGLSRQPPLSSLRATA 158

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
             AAEKR  + +LLPSGP  LGGD  +M DLSP+QAAAMA E+RL  D+WC SQ    + 
Sbjct: 159 ATAAEKRVCAGTLLPSGPHRLGGDSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTEALE 218

Query: 178 QNIGHSKIICGPIT-----NALDTISRKR-NRASNISSESNSVDLEAGTS----TSEPML 227
                S     P++      +++  S KR N  SN +S   S  L+ G+     T E   
Sbjct: 219 DEESDSDTCKEPVSIRETCMSMNAKSVKRCNSLSNANSCPPSSSLQGGSDVIDLTEESFE 278

Query: 228 NHNARTH-------KSCSGSVESSGALSSAFMRNS---GATHNPEEPAMWECKACTFLNH 277
              A+ +        SC+  V +SG   S+    S    A  + EE  MWEC  CT LN 
Sbjct: 279 PRCAKRNCSPGDQGPSCAKDVPNSGFTKSSITLPSTSYNANQSREESTMWECAECTLLNP 338

Query: 278 GCGSVPHQGDASA------NDRVWTCKFWTLENCVKLDKC 311
               +     A+         +VW+CKF TLEN VKL+KC
Sbjct: 339 SLAPICELCTATKPKEKEMKHKVWSCKFCTLENEVKLEKC 378

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562774|ref|NP_564704.2| zinc ion binding protein [Arabidopsis thaliana] gi|110738098|dbj|BAF00982.1| hypothetical protein [Arabidopsis thaliana] gi|119935912|gb|ABM06032.1| At1g55915 [Arabidopsis thaliana] gi|332195198|gb|AEE33319.1| zinc ion binding protein [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/340 (44%), Positives = 194/340 (57%), Gaps = 29/340 (8%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           M   KW+VKLLSE    N   LG N+  GV +KL LR++N D + L +HE+LDTMLHELC
Sbjct: 42  MTRRKWRVKLLSEFCPTNPRLLGVNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELC 101

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+ELR+EC+EL SKGITG G  FD PG+ LGG+S QP LS L  TA
Sbjct: 102 HNAHGPHNASFYKLWDELRKECEELMSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATA 161

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
             AAEKR  + +LLPSGP+ LGGD  +M DLSP+QAAAMA E+RL  D+WC SQ    + 
Sbjct: 162 ATAAEKRVRAGTLLPSGPQRLGGDSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALE 221

Query: 178 QNIGHSKIICGPIT-----NALDTISRKR-NRASNISSESNSVDLEAGTS----TSEPML 227
                S     P++      +++  S KR N  SN  S   S   + G+     T E   
Sbjct: 222 DEENDSDTYKEPVSIRETCTSVNGKSVKRCNSWSNAHSCPPSSSHQQGSDVIDLTEESFE 281

Query: 228 NHNARTHK-------SCSGSVESSGALSSAFMRNS---GATHNPEEPAMWECKACTFLNH 277
               + ++       SC+  V ++G + S+    S    A  + EE  MWEC  CT LN 
Sbjct: 282 IRCTKRNRSPGDQGPSCAKDVPNAGVMKSSIPLPSTSYNANQSREESTMWECAECTLLNP 341

Query: 278 GCGSVPHQGDASA------NDRVWTCKFWTLENCVKLDKC 311
               +     A+         +VW+CKF TLEN VKL+KC
Sbjct: 342 SLAPICELCTAAKPKEREMKHKVWSCKFCTLENEVKLEKC 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465168|ref|XP_004150300.1| PREDICTED: uncharacterized protein LOC101209563, partial [Cucumis sativus] gi|449510535|ref|XP_004163693.1| PREDICTED: uncharacterized LOC101209563, partial [Cucumis sativus]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 157/356 (44%), Positives = 203/356 (57%), Gaps = 45/356 (12%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           MR HKW+VK+LSE   KN   LG N+G G+H+KL LR+ NRD +  PF++VLDTMLHELC
Sbjct: 47  MRKHKWRVKVLSEFCPKNPALLGLNVGRGIHVKLRLRRPNRDGDFFPFNQVLDTMLHELC 106

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+ELR+EC+EL +KG++G    FD PGR LGG   QP LSSL +++
Sbjct: 107 HNLHGPHNANFYKLWDELRKECEELIAKGVSGTAQGFDLPGRRLGGNVRQPSLSSLRKSS 166

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
           LAAAE R    SLLPSGP  LGGD  +M  LSPVQAAAMA E+RLQ D+WCAS   + + 
Sbjct: 167 LAAAEGRRRLGSLLPSGPNRLGGDSNIMVALSPVQAAAMAAERRLQDDIWCASFQGMPVD 226

Query: 178 QN--------IGHSKII--CGPITN---ALDTISRKR--------NRASNISSESNSVDL 216
           ++          HS      GP  N   ++D + +KR        N++SN   E + VDL
Sbjct: 227 EDCCPHFPSEAAHSSQAGKSGPFHNLSKSVDALHQKRCRESERSFNKSSNGRLEPDFVDL 286

Query: 217 EAGTSTSEPMLNHNARTHKSCSGSVESSGALSSA--------------FMRNSGATHNPE 262
               +      +++A ++K        S   SSA                RN G  H P 
Sbjct: 287 SKDNAIPGSSADYSAESNKRHKLPDRISFPQSSAETSSIDLSCSSSNLMARNDGTIH-PG 345

Query: 263 EPAMWECKACTFLNHGCGSV------PHQGDASANDRVWTCKFWTLENCVKLDKCS 312
           E +MWEC  CT LN     +          D+    + W+CKF TLEN VKL+KC+
Sbjct: 346 ELSMWECGNCTLLNPPLAPICELCFSQKPTDSDTRYKFWSCKFCTLENSVKLEKCT 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952857|gb|AFW85506.1| putative uncharacterized protein hypro4 [Zea mays]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/324 (44%), Positives = 182/324 (56%), Gaps = 49/324 (15%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           MR HKW+VK+LSE   +N   LG N+GAGV +KL LR+  RD + +P+ EVLDTMLHELC
Sbjct: 39  MRRHKWRVKVLSEFSPRNPRLLGLNVGAGVEVKLRLRRAGRDHDFIPYEEVLDTMLHELC 98

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN+  PHDA+FYKLW+ELR+EC+EL SKGITG G  FD  GR +GG +  PP  SL Q  
Sbjct: 99  HNERGPHDAQFYKLWDELRKECEELVSKGITGTGQGFDGTGRRVGGFTVHPPPPSLRQAT 158

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
           LAAA+KRA + +LLPSGP+ LGG+  +M  LSPVQAAAMA E+R+  DLWC S D     
Sbjct: 159 LAAAQKRARNGALLPSGPRKLGGNSEIMSALSPVQAAAMAAERRMYDDLWCGSHD----- 213

Query: 178 QNIGHSKIICGPITNALDTISRKRNRASNISSESNSVDLEAGTSTSEPMLNHNARTHKSC 237
                                      S I    + + L+       P L  + +   SC
Sbjct: 214 --------------------------QSAIDDSDDVIILQ-----ESPNLTRDEKDKGSC 242

Query: 238 SGSVESSGALSSAFM--RNSGATHNPEEPAMWECKACTFLNHG-------CGSVPHQGDA 288
           S +       S   +  R+   T +  + + WEC ACT LN         CG+   +  A
Sbjct: 243 SNTSAQPSTSSRIHIAARDDRTTSDALDSSKWECGACTLLNQPLAPICEVCGTTKPK-IA 301

Query: 289 SANDRVWTCKFWTLENCVKLDKCS 312
            A    W+CKF TLEN  KLDKCS
Sbjct: 302 KAKYTTWSCKFCTLENSTKLDKCS 325

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564031|ref|XP_002523014.1| conserved hypothetical protein [Ricinus communis] gi|223537736|gb|EEF39356.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/322 (41%), Positives = 176/322 (54%), Gaps = 61/322 (18%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           MRNH WKV++LSE    N   +G N+G G  IKL LR+ N + +  P+ +VLDTMLHELC
Sbjct: 39  MRNHHWKVRILSEFCPSNPSLMGLNIGGGAEIKLRLRRPNCEWDFFPYEQVLDTMLHELC 98

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FY L +++R+EC+EL +KGITG G  FD PGR LGG S QPPLSS+ QTA
Sbjct: 99  HNQYGPHNADFYNLLDQIRKECEELIAKGITGTGQGFDLPGRCLGGFSRQPPLSSMRQTA 158

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
           LAAAE RA   ++LPSGP+ +GGD  +   LSPVQAAAMA E+RL  DLWC S+      
Sbjct: 159 LAAAENRARRGAVLPSGPQRVGGDGNIKTALSPVQAAAMAAERRLHDDLWCGSK------ 212

Query: 178 QNIGHSKIICGPITNALDTISRKRNRASNISSESNSVDLEAGTSTSEPMLNHNARTHKSC 237
                          +L+ IS  +      S  + S+  E  +S + P            
Sbjct: 213 ---------------SLEGISDLKENVEASSKSNISITFEGVSSRTSP------------ 245

Query: 238 SGSVESSGALSSAFMRNSGATHNP-EEPAMWECKACTFLNH-------GCGSVPHQGDAS 289
                          R       P ++   W+C  CT LN         CG  P +  + 
Sbjct: 246 ---------------RGQTTGQKPVDDHPQWQCHMCTLLNQPLVLICEACG--PERSKSI 288

Query: 290 ANDRVWTCKFWTLENCVKLDKC 311
           AN +VW+CKF TLEN V+L++C
Sbjct: 289 ANFKVWSCKFCTLENSVELERC 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778309|gb|AAF79318.1|AC002304_11 F14J16.17 [Arabidopsis thaliana]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 187/340 (55%), Gaps = 37/340 (10%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           M   KW+VKLLSE    N   LG N+  GV +KL LR++N D + L +HE+LDTMLHELC
Sbjct: 96  MTRRKWRVKLLSEFCPTNPRLLGVNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELC 155

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVSPQPPLSSLPQTA 117
           HN   PH+A FYKLW+ELR        KGITG G  FD PG+ LGG+S QP LS L  TA
Sbjct: 156 HNAHGPHNASFYKLWDELR--------KGITGTGQGFDMPGKRLGGLSRQPSLSFLRATA 207

Query: 118 LAAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQDLVDMG 177
             AAEKR  + +LLPSGP+ LGGD  +M DLSP+QAAAMA E+RL  D+WC SQ    + 
Sbjct: 208 ATAAEKRVRAGTLLPSGPQRLGGDSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALE 267

Query: 178 QNIGHSKIICGPIT-----NALDTISRKR-NRASNISSESNSVDLEAGTS----TSEPML 227
                S     P++      +++  S KR N  SN  S   S   + G+     T E   
Sbjct: 268 DEENDSDTYKEPVSIRETCTSVNGKSVKRCNSWSNAHSCPPSSSHQQGSDVIDLTEESFE 327

Query: 228 NHNARTHK-------SCSGSVESSGALSSAFMRNS---GATHNPEEPAMWECKACTFLNH 277
               + ++       SC+  V ++G + S+    S    A  + EE  MWEC  CT LN 
Sbjct: 328 IRCTKRNRSPGDQGPSCAKDVPNAGVMKSSIPLPSTSYNANQSREESTMWECAECTLLNP 387

Query: 278 GCGSVPHQGDASA------NDRVWTCKFWTLENCVKLDKC 311
               +     A+         +VW+CKF TLEN VKL+KC
Sbjct: 388 SLAPICELCTAAKPKEREMKHKVWSCKFCTLENEVKLEKC 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:505006190	404	AT1G55915 [Arabidopsis thalian	0.541	0.423	0.5	4.8e-52
ASPGD|ASPL0000062736	336	AN0304 [Emericella nidulans (t	0.322	0.303	0.457	2.8e-17
UNIPROTKB|G4MYN3	483	MGG_01341 "Uncharacterized pro	0.322	0.211	0.428	4.7e-15
CGD|CAL0004104	306	orf19.291 [Candida albicans (t	0.275	0.284	0.370	2.2e-10
UNIPROTKB|Q5AEH7	306	CaO19.291 "Putative uncharacte	0.275	0.284	0.370	2.2e-10
SGD|S000001176	269	WSS1 "Sumoylated protein local	0.310	0.364	0.372	6.6e-09
POMBASE|SPCC1442.07c	282	SPCC1442.07c "ubiquitin/metall	0.300	0.336	0.368	1.1e-07
POMBASE|SPAC521.02	283	SPAC521.02 "WLM domain protein	0.291	0.325	0.357	2.2e-06

TAIR|locus:505006190 AT1G55915 [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 87/174 (50%), Positives = 106/174 (60%)

Query:     1 MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
             M   KW+VKLLSE    N   LG N+  GV +KL LR++N D + L +HE+LDTMLHELC
Sbjct:    42 MTRRKWRVKLLSEFCPTNPRLLGVNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELC 101

Query:    59 HNDIAPHDAKFYKLWEELREECDELRSKGITGVGS-FDRPGRVLGGVXXXXXXXXXXXXX 117
             HN   PH+A FYKLW+ELR+EC+EL SKGITG G  FD PG+ LGG+             
Sbjct:   102 HNAHGPHNASFYKLWDELRKECEELMSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATA 161

Query:   118 XXXXEKRAHSNXXXXXXXXXXXXDRFVMYDLSPVQAAAMAVEKRLQYDLWCASQ 171
                 EKR  +             D  +M DLSP+QAAAMA E+RL  D+WC SQ
Sbjct:   162 ATAAEKRVRAGTLLPSGPQRLGGDSSIMSDLSPIQAAAMAAERRLLDDIWCGSQ 215

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000062736 AN0304 [Emericella nidulans (taxid:162425)]

 Score = 213 (80.0 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 48/105 (45%), Positives = 59/105 (56%)

Query:     1 MRNHKWKVKLLSEM--HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
             MR   W+V  L E     +N LG N+  G  I L LR      + LP  +V+DTMLHELC
Sbjct:    38 MRRRSWRVGTLCEFFPQQRNLLGLNVNGGEKICLRLRHAGDQSQFLPLDQVVDTMLHELC 97

Query:    59 HNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGG 103
             H    PH+ +F+ LW +LR+E  EL  KG TG G F   GR LGG
Sbjct:    98 HIVHGPHNQQFHALWNQLRDEHTELTMKGYTGEG-FLSHGRRLGG 141

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010225 "response to UV-C" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0010224 "response to UV-B" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|G4MYN3 MGG_01341 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 192 (72.6 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 45/105 (42%), Positives = 60/105 (57%)

Query:     1 MRNHKWKVKLLSEMH--SKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
             MR   W+V+ L+E +   +N LG N+     I + LR      + LPF EV DT+LHEL 
Sbjct:    38 MRARGWRVRQLAEFYPDQQNLLGLNVNRTHKILVRLRYPGDVNQFLPFEEVTDTLLHELA 97

Query:    59 HNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGG 103
             H    PHD+KF+ LW++LR+E + L   G TG G F   G  LGG
Sbjct:    98 HIVHGPHDSKFHALWDQLRDEHEGLLRSGYTGDG-FLSVGHKLGG 141

GO:0008150 "biological_process" evidence=ND

CGD|CAL0004104 orf19.291 [Candida albicans (taxid:5476)]

 Score = 155 (59.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%)

Query:     1 MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
             +   K+KV  L EM+   A   G N+  G  I L LR+ + D+  LP  +++ T+LHEL 
Sbjct:    53 IHEQKFKVGKLYEMYPDKAELWGLNVNHGQKIYLRLREHHNDKSFLPMGDIVGTLLHELT 112

Query:    59 HNDIAPHDAKFYKLWEELREECDELRSKG 87
             HN  + HD+KFYK  ++L+   D++  +G
Sbjct:   113 HNLYSAHDSKFYKFLDKLKSRYDDIHCRG 141

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IEA

GO:0010225 "response to UV-C" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0010224 "response to UV-B" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

UNIPROTKB|Q5AEH7 CaO19.291 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 155 (59.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%)

Query:     1 MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
             +   K+KV  L EM+   A   G N+  G  I L LR+ + D+  LP  +++ T+LHEL 
Sbjct:    53 IHEQKFKVGKLYEMYPDKAELWGLNVNHGQKIYLRLREHHNDKSFLPMGDIVGTLLHELT 112

Query:    59 HNDIAPHDAKFYKLWEELREECDELRSKG 87
             HN  + HD+KFYK  ++L+   D++  +G
Sbjct:   113 HNLYSAHDSKFYKFLDKLKSRYDDIHCRG 141

GO:0003674 "molecular_function" evidence=ND

SGD|S000001176 WSS1 "Sumoylated protein localizing to the nuclear periphery of mother cells" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 135 (52.6 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
 Identities = 38/102 (37%), Positives = 53/102 (51%)

Query:     1 MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
             M+ + +KV  L E + ++   LG N+  G  I L LR    + + LP   ++ TMLHEL 
Sbjct:    59 MKENHFKVTNLVEFYPRDQRLLGMNVNHGSKIMLRLRCSTDEFQFLPMECIMGTMLHELT 118

Query:    59 HNDIAPHDAKFYKLWEEL--REECDELRSKGITGVGSFDRPG 98
             HN   PHD KFY   +EL  R+   E R    T +G+  R G
Sbjct:   119 HNLFGPHDKKFYNKLDELIGRQWVIEQRGLYDTFLGNGQRLG 160

GO:0005634 "nucleus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA;IGI

GO:0010224 "response to UV-B" evidence=IMP

GO:0010225 "response to UV-C" evidence=IMP

GO:0006281 "DNA repair" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016925 "protein sumoylation" evidence=IGI

GO:0005635 "nuclear envelope" evidence=IDA

POMBASE|SPCC1442.07c SPCC1442.07c "ubiquitin/metalloprotease fusion protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 143 (55.4 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 38/103 (36%), Positives = 51/103 (49%)

Query:     1 MRNHKWKVKLLSEM-------HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTM 53
             M +H+W V LLSEM       H    LG N   G HI+L LR  +R      +  V  T+
Sbjct:   142 MDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRLRT-DRYDGFRDYKTVKSTL 200

Query:    54 LHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDR 96
             +HEL HN    HD+ F++L+ +L +E D     G  G    DR
Sbjct:   201 IHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYVSDR 243

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISM

GO:0016925 "protein sumoylation" evidence=ISS

POMBASE|SPAC521.02 SPAC521.02 "WLM domain protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 34/95 (35%), Positives = 47/95 (49%)

Query:     1 MRNHKWKVKLLSEM-HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCH 59
             M+ H + V  L E+ ++    G N   G  I+L+LR  +     LPF  V+D  LHELCH
Sbjct:    64 MKEHGFGVTSLDEVAYNAKFWGRNWNKGECIELVLR--DASNRWLPFEFVMDVFLHELCH 121

Query:    60 NDIAPHDAKFYKLWEELREECDELRSKGITGVGSF 94
                 PHD +F+     LR     L +KG  G G +
Sbjct:   122 IWQGPHDRRFFSHLSTLRAALIALYAKGYKGPGKY 156


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      316       272   0.00099  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  231 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.17u 0.19s 21.36t   Elapsed:  00:00:01
  Total cpu time:  21.17u 0.19s 21.36t   Elapsed:  00:00:01
  Start:  Fri May 10 03:52:15 2013   End:  Fri May 10 03:52:16 2013

GO:0005634 "nucleus" evidence=IDA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISM

GO:0016925 "protein sumoylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033345001 SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (396 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam08325	183	pfam08325, WLM, WLM domain	1e-40

>gnl|CDD|219796 pfam08325, WLM, WLM domain

 Score =  140 bits (354), Expect = 1e-40
 Identities = 64/165 (38%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 1   MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
           M+ H+W+V LL+E + +NA  LG N+  G  I+L LR  + D   LPF  ++ T+LHEL 
Sbjct: 33  MKEHRWRVGLLTEFYPRNARLLGLNVNKGEVIELRLRTPSDDGGFLPFESIMGTLLHELA 92

Query: 59  HNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQTAL 118
           HN   PHD KFY L +ELR+E +EL ++G  G   F   GR LGG               
Sbjct: 93  HNVHGPHDRKFYALLDELRKEVEELDARGYDG---FLSSGRRLGGRGSYNSA-------- 141

Query: 119 AAAEKRAHSNSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQ 163
              E R    + L  G + LGGD       S  + AA A E+RL+
Sbjct: 142 ---EGRELGGNGLSGGGERLGGDSLSRSGESARELAAAAAERRLE 183

This is a predicted metallopeptidase domain called WLM (Wss1p-like metalloproteases). These are linked to the Ub-system by virtue of fusions with the UB-binding PUG (PUB), Ub-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PF08325	186	WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1	100.0
KOG4842	278	consensus Protein involved in sister chromatid sep	99.68
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	99.56
COG1451	223	Predicted metal-dependent hydrolase [General funct	99.25
KOG4842	278	consensus Protein involved in sister chromatid sep	99.24
smart00731	146	SprT SprT homologues. Predicted to have roles in t	98.06
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	97.49
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	97.19
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	97.06
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	96.61
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	96.26
PRK04351	149	hypothetical protein; Provisional	95.78
PRK04860	160	hypothetical protein; Provisional	94.5
COG3091	156	SprT Zn-dependent metalloprotease, SprT family [Ge	94.49
KOG4345	774	consensus NF-kappa B regulator AP20/Cezanne [Signa	93.19
PF12773	50	DZR: Double zinc ribbon	92.38
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	92.1
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	91.0
COG0501	302	HtpX Zn-dependent protease with chaperone function	90.27
PRK03001	283	M48 family peptidase; Provisional	89.57
PRK04897	298	heat shock protein HtpX; Provisional	89.53
PRK02870	336	heat shock protein HtpX; Provisional	89.17
PRK03982	288	heat shock protein HtpX; Provisional	87.84
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	87.49
COG4219	337	MecR1 Antirepressor regulating drug resistance, pr	87.36
KOG4477	228	consensus RING1 interactor RYBP and related Zn-fin	87.29
PRK05457	284	heat shock protein HtpX; Provisional	87.04
PRK01345	317	heat shock protein HtpX; Provisional	86.97
KOG3931	484	consensus Uncharacterized conserved protein [Funct	86.83
PRK02391	296	heat shock protein HtpX; Provisional	85.69
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	85.46
PRK03072	288	heat shock protein HtpX; Provisional	84.97
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	83.62
PRK01265	324	heat shock protein HtpX; Provisional	83.41
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	83.41
cd04270	244	ZnMc_TACE_like Zinc-dependent metalloprotease; TAC	83.37
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	82.82

>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase

Probab=100.00  E-value=2.1e-42  Score=310.24  Aligned_cols=148  Identities=45%  Similarity=0.676  Sum_probs=131.0

Q ss_pred             CCCCCceeceecccccCC--ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHH
Q 038987            1 MRNHKWKVKLLSEMHSKN--ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELRE   78 (316)
Q Consensus         1 Mr~~~w~V~~L~Ef~P~~--lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~Fy~ll~~l~~   78 (316)
                      |++|+|+|++|+||||++  +||+|+|+|++|.||||++++ ..|+||+.|++|||||||||+|++||++||+++++|..
T Consensus        33 M~~~~~~V~~L~E~~P~~~~llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t~lHELaH~~~~~H~~~F~~l~~~l~~  111 (186)
T PF08325_consen   33 MRKHGWRVGSLEEFYPNGERLLGLNVNKGEKICLRLRTPDD-GGFLPYETILGTMLHELAHNVHGPHDDKFWKLLDELRK  111 (186)
T ss_pred             HHHcCcccCeeeccCCCCCCCcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHH
Confidence            899999999999999998  999999999999999999988 89999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccCCCcccCCCcccCCCCCCCCCCChhHHHHHHHHhhhhcCCCCCCCCcccCCCCCC----CCCCCHHHHH
Q 038987           79 ECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQTALAAAEKRAHSNSLLPSGPKLLGGDRFV----MYDLSPVQAA  154 (316)
Q Consensus        79 e~~~l~~~G~~G~ggf~~~G~rLGG~~~~~p~~~~r~~al~aaekR~~~~~~~~~g~~~LGG~~~~----~~~~s~re~a  154 (316)
                      |++.|+++||+ + ||++.|++|||.....+         ...+.   ....+.+++++|||++..    .+..++||++
T Consensus       112 e~~~l~~~G~~-~-gf~~~G~~l~~~~~~~~---------~~~~~---~~~~~~~~~~~LgG~s~~~~~~~~~~~~Re~~  177 (186)
T PF08325_consen  112 ECEELDAKGYT-E-GFWSSGRRLGGSSGQPS---------EEREL---RGNGLSGGGQRLGGGSSSRPRKAQPKSPREAA  177 (186)
T ss_pred             HHHHHHhcCCc-c-ccCCCCcccCCCCcccc---------hhhhh---hccccCCCCeeCCCCCCCCCCcCCCcCHHHHH
Confidence            99999999999 6 89999999999765433         01111   112356778999998752    5689999999


Q ss_pred             HHHHHHHhh
Q 038987          155 AMAVEKRLQ  163 (316)
Q Consensus       155 a~AAerR~~  163 (316)
                      |+|||||++
T Consensus       178 a~AAerR~~  186 (186)
T PF08325_consen  178 AAAAERRLR  186 (186)
T ss_pred             HHHHHhhcC
Confidence            999999985

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.

>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=2.1e-17  Score=154.59  Aligned_cols=160  Identities=26%  Similarity=0.301  Sum_probs=121.5

Q ss_pred             CCCCCceeceecccccCC--ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHH
Q 038987            1 MRNHKWKVKLLSEMHSKN--ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELRE   78 (316)
Q Consensus         1 Mr~~~w~V~~L~Ef~P~~--lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~Fy~ll~~l~~   78 (316)
                      |++|+|.|-.+.++++.+  +||+|||.|.+|.|+||...+..+|+|++++..|++|||+|++.+||+++||+.|+.|..
T Consensus        62 mkEh~f~vti~~Dk~irnq~~sg~nvn~gski~lslr~~~~e~~~lp~e~pmgtylhel~h~lqgPhd~rfl~~L~~Lra  141 (278)
T KOG4842|consen   62 MKEHHFKVTILVDKYIRNQRLSGMNVNHGSKIMLSLRCSTDEFQFLPMECPMGTYLHELTHNLQGPHDKRFLNKLDELRA  141 (278)
T ss_pred             hccccceeEEeehhHHHhhhhhccccCCcceEEEEeeccccccccccccccchhhhhhhhhhhcCCChHHHHHHHHHHhh
Confidence            899999999999999998  999999999999999996666778999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccCCCcccCCCcccCCCCCCCCCCChhHHHHHHHHhhhhcCCCCCCCCcccCCC-------------CCCC
Q 038987           79 ECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQTALAAAEKRAHSNSLLPSGPKLLGGD-------------RFVM  145 (316)
Q Consensus        79 e~~~l~~~G~~G~ggf~~~G~rLGG~~~~~p~~~~r~~al~aaekR~~~~~~~~~g~~~LGG~-------------~~~~  145 (316)
                      +--.+..+|+.-  -|.+-+..|||...-.- .  +...+..        +. ..|...|++.             +++.
T Consensus       142 d~gii~~mg~hr--W~vg~l~el~g~~nt~v-~--~~~tLg~--------st-nqG~i~lrlrtdrkkgfR~y~tissTl  207 (278)
T KOG4842|consen  142 DQGIIEQMGLHR--WFVGNLQELGGRANTRV-N--RYPTLGI--------ST-NQGVIVLRLRTDRKKGFRHYETISSTL  207 (278)
T ss_pred             chhHHHHhcccc--eechhhhhcccccceee-c--Cccceee--------cc-ccceEEEecccchhcccccCCCchHHH
Confidence            999998887643  36667788887532100 0  0000000        00 1111222221             1122


Q ss_pred             CCCCHHHHHHHHHHHHhhhcccccCCccc
Q 038987          146 YDLSPVQAAAMAVEKRLQYDLWCASQDLV  174 (316)
Q Consensus       146 ~~~s~re~aa~AAerR~~d~k~C~s~~~~  174 (316)
                      ....+|+.+++++|++.+.+.||+.....
T Consensus       208 ~heLtr~v~~ehde~fyrLdrql~kek~~  236 (278)
T KOG4842|consen  208 RHELTREVAAEHDERFYRLDRQLGKEKNN  236 (278)
T ss_pred             HhhhhhhHhhhhhhHHHHHHHHhCcccch
Confidence            24557899999999999999999986544

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=99.56  E-value=2.8e-15  Score=132.90  Aligned_cols=61  Identities=28%  Similarity=0.382  Sum_probs=56.8

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHh
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRS   85 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~Fy~ll~~l~~e~~~l~~   85 (316)
                      .||.| +....|.|++|..     ++|.+.|+|||+|||||++|+||+++||+++.+++|+|++...
T Consensus       140 rWGsc-~~~~~I~ln~~L~-----~~P~~~idYVvvHEL~Hl~~~nHs~~Fw~~v~~~~Pd~k~~~~  200 (205)
T PF01863_consen  140 RWGSC-SSKGNITLNWRLV-----MAPPEVIDYVVVHELCHLRHPNHSKRFWALVEKYMPDYKERRK  200 (205)
T ss_pred             ccccC-CCCCcEEeecccc-----cCCccHHHHHHHHHHHHhccCCCCHHHHHHHHHHCcCHHHHHH
Confidence            89999 6555999999996     8999999999999999999999999999999999999998864

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=99.25  E-value=3.6e-12  Score=117.78  Aligned_cols=61  Identities=25%  Similarity=0.351  Sum_probs=57.4

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHh
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELRS   85 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~Fy~ll~~l~~e~~~l~~   85 (316)
                      .||.+.-+| .|.|+++..     .+|.+.|+||++|||||+.++||+++||+++..++|+|+++..
T Consensus       151 ~WGScs~~~-~i~~~~~l~-----~~p~~~i~YVvvHELaHLke~nHs~~Fw~lv~~~~P~~~~~~~  211 (223)
T COG1451         151 RWGSCSKAG-EIRFNWRLV-----MAPEEVIDYVVVHELAHLKEKNHSKRFWRLVEKYMPDYRAAKR  211 (223)
T ss_pred             eeeeecCCC-cEEeehhhh-----cCCHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHCCChHHHHH
Confidence            899888888 999999987     5999999999999999999999999999999999999998865

>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=4.6e-12  Score=118.96  Aligned_cols=85  Identities=29%  Similarity=0.414  Sum_probs=79.1

Q ss_pred             CCCCCceeceecccccCC--------ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChhHHHH
Q 038987            1 MRNHKWKVKLLSEMHSKN--------ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKL   72 (316)
Q Consensus         1 Mr~~~w~V~~L~Ef~P~~--------lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~Fy~l   72 (316)
                      |-.|.|.|+.|+|+.|..        +||+|.|.| .|.+|||++... .|+.|+.|-.|+.|||+|+++.-|+..||.+
T Consensus       149 mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG-~i~lrlrtdrkk-gfR~y~tissTl~heLtr~v~~ehde~fyrL  226 (278)
T KOG4842|consen  149 MGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQG-VIVLRLRTDRKK-GFRHYETISSTLRHELTREVAAEHDERFYRL  226 (278)
T ss_pred             hcccceechhhhhcccccceeecCccceeeccccc-eEEEecccchhc-ccccCCCchHHHHhhhhhhHhhhhhhHHHHH
Confidence            567999999999999985        799999999 999999998655 5999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 038987           73 WEELREECDELRSKG   87 (316)
Q Consensus        73 l~~l~~e~~~l~~~G   87 (316)
                      -.++-+|-..+++-+
T Consensus       227 drql~kek~~ad~~~  241 (278)
T KOG4842|consen  227 DRQLGKEKNNADQII  241 (278)
T ss_pred             HHHhCcccchhhhhc
Confidence            999999999998754

>smart00731 SprT SprT homologues

Probab=98.06  E-value=1.7e-06  Score=74.67  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=47.2

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCC------CCChhHHHHHHHHHHHH
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIA------PHDAKFYKLWEELREEC   80 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~------~H~~~Fy~ll~~l~~e~   80 (316)
                      .+|....+...|.|+.+...    -.|.+.|++||+|||||....      +|++.|++++.++...+
T Consensus        33 ~~G~~~~~~~~I~ln~~l~~----~~~~~~l~~~l~HEm~H~~~~~~g~~~~Hg~~f~~~~~~~~~~~   96 (146)
T smart00731       33 TGGRCLLKSAEIRLNPKLLT----ENGRDRLRETLLHELCHAALYLFGRGYGHGDEWKRWMRQVNGLF   96 (146)
T ss_pred             hhHHhhcCCCEEEeCHHHHh----hccHHHHHhhHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHcCCC
Confidence            46766555668999977642    468899999999999999988      99999999999886543

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.49  E-value=5.1e-05  Score=49.26  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             CceeeccCCcccCcCccccccCCC
Q 038987          293 RVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       293 ~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ..|.|..|||.|......|.+|++
T Consensus         3 g~W~C~~C~~~N~~~~~~C~~C~~   26 (30)
T PF00641_consen    3 GDWKCPSCTFMNPASRSKCVACGA   26 (30)
T ss_dssp             SSEEETTTTEEEESSSSB-TTT--
T ss_pred             cCccCCCCcCCchHHhhhhhCcCC
Confidence            479999999999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=97.19  E-value=0.00024  Score=60.84  Aligned_cols=58  Identities=24%  Similarity=0.318  Sum_probs=44.2

Q ss_pred             ccccccCCcc---EEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCC--------CCCChhHHHHHHHHHHHH
Q 038987           19 ALGSNLGAGV---HIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDI--------APHDAKFYKLWEELREEC   80 (316)
Q Consensus        19 lLGlN~N~G~---~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~--------~~H~~~Fy~ll~~l~~e~   80 (316)
                      .+|...-.+.   .|.|+.....    ..|.+.|..||+|||||...        .+|++.|..++.++...+
T Consensus        31 ~~G~~~~~~~~~~~I~ls~~~~~----~~~~~~~~~tL~HEm~H~~~~~~~~~~~~~Hg~~fk~~~~~ig~~~   99 (157)
T PF10263_consen   31 TAGRCRYKRRSPCEIRLSPKLLD----RNPEEELIDTLLHEMAHAAAYVFGGGRRRGHGKEFKQWARRIGASP   99 (157)
T ss_pred             ceEEEEECCCCceEEEECHHHHH----hhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHCCcc
Confidence            5565444444   6777766643    37889999999999999877        799999999998886544

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>smart00547 ZnF_RBZ Zinc finger domain

Probab=97.06  E-value=0.00023  Score=44.51  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             ceeeccCCcccCcCccccccCCC
Q 038987          294 VWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       294 ~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      .|.|..||+.|......|.+|++
T Consensus         2 ~W~C~~C~~~N~~~~~~C~~C~~   24 (26)
T smart00547        2 DWECPACTFLNFASRSKCFACGA   24 (26)
T ss_pred             cccCCCCCCcChhhhccccccCC
Confidence            59999999999999999999985

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.61  E-value=0.00073  Score=43.82  Aligned_cols=22  Identities=32%  Similarity=0.872  Sum_probs=17.2

Q ss_pred             CccccCcceeccCC----CCCCCCCC
Q 038987          265 AMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       265 ~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      ..|.|+.||++|++    |..|..|+
T Consensus         3 g~W~C~~C~~~N~~~~~~C~~C~~~r   28 (30)
T PF00641_consen    3 GDWKCPSCTFMNPASRSKCVACGAPR   28 (30)
T ss_dssp             SSEEETTTTEEEESSSSB-TTT--BT
T ss_pred             cCccCCCCcCCchHHhhhhhCcCCCC
Confidence            58999999999999    98887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>smart00547 ZnF_RBZ Zinc finger domain

Probab=96.26  E-value=0.0021  Score=40.07  Aligned_cols=21  Identities=48%  Similarity=0.993  Sum_probs=18.7

Q ss_pred             CccccCcceeccCC----CCCCCCC
Q 038987          265 AMWECKACTFLNHG----CGSVPHQ  285 (316)
Q Consensus       265 ~~W~C~~CTllN~~----C~~C~rP  285 (316)
                      +.|.|+.||++|.+    |..|..|
T Consensus         1 g~W~C~~C~~~N~~~~~~C~~C~~p   25 (26)
T smart00547        1 GDWECPACTFLNFASRSKCFACGAP   25 (26)
T ss_pred             CcccCCCCCCcChhhhccccccCCc
Confidence            36999999999999    9999876

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>PRK04351 hypothetical protein; Provisional

Probab=95.78  E-value=0.0094  Score=52.47  Aligned_cols=45  Identities=29%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             cEEEEeeecCCCCCCCCChHHHHHHHHHHhhhc------C-CCCCChhHHHHHHHH
Q 038987           28 VHIKLLLRKLNRDRESLPFHEVLDTMLHELCHN------D-IAPHDAKFYKLWEEL   76 (316)
Q Consensus        28 ~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~------~-~~~H~~~Fy~ll~~l   76 (316)
                      ..|.|+-..-    .-.+.+.|..||.|||||+      . +.+|+++|..++.++
T Consensus        44 ~~I~lnp~ll----~~~~~~~l~~vv~HElcH~~~~~~g~g~~h~g~~fk~~~~~v   95 (149)
T PRK04351         44 HHIEFNPKML----EEYGLEELIGIIKHELCHYHLHLEGKGYQHRDRDFKELLKQV   95 (149)
T ss_pred             CeEEeCHHHH----hhccHHHHHhhHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence            3566654432    1245789999999999998      3 567899998887765

>PRK04860 hypothetical protein; Provisional

Probab=94.50  E-value=0.025  Score=50.45  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             CChHHHHHHHHHHhhhcCC-------CCCChhHHHHHHHH
Q 038987           44 LPFHEVLDTMLHELCHNDI-------APHDAKFYKLWEEL   76 (316)
Q Consensus        44 lP~~~I~~vllHELaH~~~-------~~H~~~Fy~ll~~l   76 (316)
                      .+.+.|..||.|||||++-       .+|+++|-.++.++
T Consensus        58 ~~~~~l~~~v~HEl~H~~~~~~~g~~~~Hg~ewk~lm~~v   97 (160)
T PRK04860         58 NQQAFIDEVVPHELAHLLVYQLFGRVAPHGKEWQWMMESV   97 (160)
T ss_pred             CcHHHHHhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            4678999999999999752       38999888887764

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]

Probab=94.49  E-value=0.033  Score=49.58  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHhhhcC-------CCCCChhHHHHHHHH
Q 038987           46 FHEVLDTMLHELCHND-------IAPHDAKFYKLWEEL   76 (316)
Q Consensus        46 ~~~I~~vllHELaH~~-------~~~H~~~Fy~ll~~l   76 (316)
                      .+.|+.||.|||||+.       +.+||.+|..+|.++
T Consensus        58 ~~f~~~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV   95 (156)
T COG3091          58 EDFIEQVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQV   95 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHh
Confidence            3578999999999985       569999998888765

>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]

Probab=93.19  E-value=0.03  Score=59.65  Aligned_cols=23  Identities=9%  Similarity=0.112  Sum_probs=21.7

Q ss_pred             ceeeccCCcccCcCccccccCCC
Q 038987          294 VWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       294 ~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      +|.|-.||++|+....+|.+|++
T Consensus       185 eW~~lik~ass~pr~~r~~~~~~  207 (774)
T KOG4345|consen  185 EWTELIKLASSEPRMHRSGNGGT  207 (774)
T ss_pred             HHHHHHHhhcccchhhhcccCCC
Confidence            49999999999999999999975

>PF12773 DZR: Double zinc ribbon

Probab=92.38  E-value=0.11  Score=36.72  Aligned_cols=46  Identities=17%  Similarity=0.259  Sum_probs=38.0

Q ss_pred             cCcceeccCC----CCCCCCCCCCCCCCCceeeccCCcccCcCccccccCC
Q 038987          269 CKACTFLNHG----CGSVPHQGDASANDRVWTCKFWTLENCVKLDKCSRVS  315 (316)
Q Consensus       269 C~~CTllN~~----C~~C~rPr~~~~~~~~WsC~~CT~~N~~~~~~C~~C~  315 (316)
                      |+.|-..|+.    |..|..+.. ......+.|+.|...|......|.-||
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~-~~~~~~~~C~~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLP-PPDQSKKICPNCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChh-hccCCCCCCcCCcCCCcCCcCccCccc
Confidence            7888888888    888876654 234557999999999999999999997

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=92.10  E-value=0.13  Score=49.88  Aligned_cols=23  Identities=22%  Similarity=0.532  Sum_probs=21.7

Q ss_pred             ceeeccCCcccCcCccccccCCC
Q 038987          294 VWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       294 ~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      .|.|+.|+|.|-.+...|-.|+.
T Consensus       140 DW~Cp~C~fhNfarn~~C~rC~~  162 (280)
T KOG4198|consen  140 DWECPGCNFHNFARNSECFRCGA  162 (280)
T ss_pred             CcccCCCCceeccccchhhhcCC
Confidence            69999999999999999999984

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=91.00  E-value=0.3  Score=38.32  Aligned_cols=58  Identities=21%  Similarity=0.072  Sum_probs=35.1

Q ss_pred             ccccccCC--ccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHH
Q 038987           19 ALGSNLGA--GVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAKFYKLWEELREECDELR   84 (316)
Q Consensus        19 lLGlN~N~--G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~Fy~ll~~l~~e~~~l~   84 (316)
                      +.|.....  ...|.|+-+        ++...-..+++|||.|.....+...+.........+..+..
T Consensus        18 ~~~~~~~~~~~~~I~in~~--------~~~~~~~f~laHELgH~~~~~~~~~~~~~~~~~~~~~~E~~   77 (122)
T PF06114_consen   18 LGGFSIPKENNPIIFINSN--------LSPERQRFTLAHELGHILLHHGDETFNYYLNYFFNERQERE   77 (122)
T ss_dssp             EEEETT----TTEEEEESS--------S-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--THHHHHH
T ss_pred             cCEEEEecCcCCEEEECCC--------CCHHHHHHHHHHHHHHHHhhhccccchhhccccchhhHHHH
Confidence            55555443  567877755        34577789999999999998888765444444443333333

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=90.27  E-value=0.27  Score=45.85  Aligned_cols=58  Identities=22%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             CceeceecccccCC-ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCCh
Q 038987            5 KWKVKLLSEMHSKN-ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDA   67 (316)
Q Consensus         5 ~w~V~~L~Ef~P~~-lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~   67 (316)
                      .|+|.....=.|+. -+|.+.+.| .|-|.--.-.    .+..++|..||.||++|.++++.=.
T Consensus       117 ~~~v~i~~~~~~NAFa~g~~~~~~-~V~vt~gLl~----~l~~dEl~aVlaHElgHi~~rd~~~  175 (302)
T COG0501         117 MPEVYILETPQPNAFALGGGPKNG-RVVVTTGLLD----LLNDDELEAVLAHELGHIKNRHTLV  175 (302)
T ss_pred             CCeeEEecCCCccceecCCCCCCe-eEEecHHHHh----hCCHHHHHHHHHHHHHHHhcccHHH
Confidence            35566666555655 667665545 6766655542    6888999999999999999986653

>PRK03001 M48 family peptidase; Provisional

Probab=89.57  E-value=0.32  Score=46.29  Aligned_cols=41  Identities=27%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCC
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAP   64 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~   64 (316)
                      ..|.+.+++ .|.|.--.-.    .++.++|..||.|||+|++|++
T Consensus        99 a~G~~~~~~-~Ivvt~gLl~----~l~~~El~aVlAHElgHi~~~h  139 (283)
T PRK03001         99 ATGRNPEHA-AVAATTGILR----VLSEREIRGVMAHELAHVKHRD  139 (283)
T ss_pred             EecCCCCCe-EEEecHHHHh----hCCHHHHHHHHHHHHHHHhCCC
Confidence            667766555 4555433321    3578999999999999999874

>PRK04897 heat shock protein HtpX; Provisional

Probab=89.53  E-value=0.31  Score=46.96  Aligned_cols=43  Identities=19%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCC
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHD   66 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~   66 (316)
                      ..|.+.+++ .|.+.--.-    ..++.++|..||.|||+|++|++.-
T Consensus       112 a~G~~~~~~-~v~vt~gLl----~~l~~~El~aVlAHElgHi~~~d~~  154 (298)
T PRK04897        112 ATGSSPKNA-AVAVTTGLL----AIMNREELEGVIGHEISHIRNYDIR  154 (298)
T ss_pred             EeccCCCCc-EEEeehHHH----hhCCHHHHHHHHHHHHHHHhcCCHH
Confidence            667766555 455553222    1467899999999999999977653

>PRK02870 heat shock protein HtpX; Provisional

Probab=89.17  E-value=0.4  Score=47.39  Aligned_cols=53  Identities=25%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             eeceecccccCC-ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCC
Q 038987            7 KVKLLSEMHSKN-ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAP   64 (316)
Q Consensus         7 ~V~~L~Ef~P~~-lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~   64 (316)
                      +|..+..=.|+. .+|.+...+ .|.|.--.-    ..++.++|..||.|||+|++|++
T Consensus       135 ~V~vi~~~~~NAFA~G~~~~~~-~Ivvt~GLL----~~L~~dEL~aVlAHELgHik~~d  188 (336)
T PRK02870        135 KVYIIDAPYMNAFASGYSEKSA-MVAITTGLL----EKLDRDELQAVMAHELSHIRHGD  188 (336)
T ss_pred             eEEEEcCCCCceEEecCCCCCc-EEEEehHHh----hhCCHHHHHHHHHHHHHHHHccc
Confidence            333333333444 678775544 565543332    24688999999999999997754

>PRK03982 heat shock protein HtpX; Provisional

Probab=87.84  E-value=0.5  Score=45.08  Aligned_cols=45  Identities=20%  Similarity=0.127  Sum_probs=30.9

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChh
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAK   68 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~   68 (316)
                      .+|.+.+++ .|.|.--..    ..++.++|..||.|||.|++|++.-..
T Consensus       100 a~G~~~~~~-~V~vt~gLl----~~l~~~El~AVlAHElgHi~~~h~~~~  144 (288)
T PRK03982        100 ATGRDPKHA-VVAVTEGIL----NLLNEDELEGVIAHELTHIKNRDTLIQ  144 (288)
T ss_pred             EeccCCCCe-EEEeehHHH----hhCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            667665444 454433332    246789999999999999999875333

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.49  E-value=0.86  Score=43.14  Aligned_cols=30  Identities=27%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             CCChHHHHHHHHHHhhhcCCCCCChhHHHH
Q 038987           43 SLPFHEVLDTMLHELCHNDIAPHDAKFYKL   72 (316)
Q Consensus        43 flP~~~I~~vllHELaH~~~~~H~~~Fy~l   72 (316)
                      -++.+.+++++.|||+|+++++.=.+|...
T Consensus       190 ~~~~~el~~il~HEl~Hikr~D~~~~~l~~  219 (299)
T PF05569_consen  190 DLSEEELRAILLHELAHIKRRDLLWKLLAE  219 (299)
T ss_pred             ccCHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence            356688999999999999988765554433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]

Probab=87.36  E-value=0.32  Score=48.15  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             CCCChHHHHHHHHHHhhhcCCCC
Q 038987           42 ESLPFHEVLDTMLHELCHNDIAP   64 (316)
Q Consensus        42 ~flP~~~I~~vllHELaH~~~~~   64 (316)
                      .-++.+.++|+++|||+|+++++
T Consensus       183 ~r~~~ee~~yIilHEl~Hlk~gD  205 (337)
T COG4219         183 ERLTDEELKYIILHELSHLKRGD  205 (337)
T ss_pred             hhcCHHhhhhhHhHHHhhhhccc
Confidence            35778899999999999999875

>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]

Probab=87.29  E-value=0.34  Score=44.75  Aligned_cols=25  Identities=28%  Similarity=0.785  Sum_probs=14.9

Q ss_pred             CCCCCCCccccCcceeccCC----CCCCC
Q 038987          259 HNPEEPAMWECKACTFLNHG----CGSVP  283 (316)
Q Consensus       259 ~~~~~~~~W~C~~CTllN~~----C~~C~  283 (316)
                      .+......|.|..|||.|..    |.+|.
T Consensus        17 kp~~Deg~WdCsvCTFrNsAeAfkC~vCd   45 (228)
T KOG4477|consen   17 KPNDDEGKWDCSVCTFRNSAEAFKCFVCD   45 (228)
T ss_pred             CCccccCceeeeeeeecchhhhhheeeec
Confidence            33445556666666666666    66663

>PRK05457 heat shock protein HtpX; Provisional

Probab=87.04  E-value=0.56  Score=45.05  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCC
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAP   64 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~   64 (316)
                      ..|.+.+++ .|.+..-.-    ..++.++|..||.|||.|+++++
T Consensus       109 a~G~~~~~~-~V~vt~gLl----~~L~~~El~aVlAHElgHi~~~d  149 (284)
T PRK05457        109 ATGASKNNS-LVAVSTGLL----QNMSRDEVEAVLAHEISHIANGD  149 (284)
T ss_pred             EecCCCCCe-EEEeehHHh----hhCCHHHHHHHHHHHHHHHHcCC
Confidence            567665554 454443222    14688999999999999999975

>PRK01345 heat shock protein HtpX; Provisional

Probab=86.97  E-value=0.54  Score=45.88  Aligned_cols=41  Identities=29%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCC
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAP   64 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~   64 (316)
                      ..|.+.+++ .|.|.--.-.    .++.++|..||.|||.|+++++
T Consensus        99 a~G~~~~~~-~V~vt~gLL~----~L~~dEL~aVlAHElgHi~~~d  139 (317)
T PRK01345         99 ATGRNPENA-AVAATTGLLQ----RLSPEEVAGVMAHELAHVKNRD  139 (317)
T ss_pred             EecCCCCCe-EEEechHHHh----hCCHHHHHHHHHHHHHHHHcCC
Confidence            567655444 5666543332    3677999999999999999755

>KOG3931 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.83  E-value=1.1  Score=45.26  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             cccccC--CccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcC---------CCCCChhHHHHHHHHH-----------
Q 038987           20 LGSNLG--AGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHND---------IAPHDAKFYKLWEELR-----------   77 (316)
Q Consensus        20 LGlN~N--~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~---------~~~H~~~Fy~ll~~l~-----------   77 (316)
                      -|++.-  +|.-+.|||-.|  ....+|...+..|||||+-|-.         .+.|+++|-+.+..+.           
T Consensus        76 AGICsyeg~gg~csIRLSeP--LLkLRPRkDLVETLLHEMIHAYlFV~n~~~dr~GHGP~F~~hMhrIN~~~GtNITvYH  153 (484)
T KOG3931|consen   76 AGICSYEGKGGMCSIRLSEP--LLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGTNITVYH  153 (484)
T ss_pred             cceeeeccccceEEEEecch--hhccCchHHHHHHHHHHHHHHheeEecccccCCCCChHHHHHHHHHhhccCceeEEEe
Confidence            366654  466778888776  3558999999999999999953         3589999999988764           


Q ss_pred             ------HHHHHHHhc
Q 038987           78 ------EECDELRSK   86 (316)
Q Consensus        78 ------~e~~~l~~~   86 (316)
                            ++|+..+|+
T Consensus       154 tFHDEV~~Yr~HwWR  168 (484)
T KOG3931|consen  154 TFHDEVDEYRRHWWR  168 (484)
T ss_pred             echHHHHHHHhhhhh
Confidence                  567777774

>PRK02391 heat shock protein HtpX; Provisional

Probab=85.69  E-value=0.69  Score=44.74  Aligned_cols=42  Identities=19%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCC
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPH   65 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H   65 (316)
                      ..|.+.+++ .|.+.--.-    ..++.++++.||.|||+|+++++-
T Consensus       108 a~G~~~~~~-~V~vt~gLl----~~L~~~El~aVlaHElgHi~~~di  149 (296)
T PRK02391        108 ATGRSPKNA-VVCVTTGLM----RRLDPDELEAVLAHELSHVKNRDV  149 (296)
T ss_pred             EecCCCCCc-EEEecHHHH----hhCCHHHHHHHHHHHHHHHHcCCH
Confidence            567765544 455432221    246789999999999999998863

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=85.46  E-value=0.45  Score=43.94  Aligned_cols=57  Identities=16%  Similarity=0.149  Sum_probs=42.4

Q ss_pred             cEEEEeeecCCCCCC-CCChHHHHHHHHHHhhhcCC-CCCChhHHHHHHHHHHHHHHHHh
Q 038987           28 VHIKLLLRKLNRDRE-SLPFHEVLDTMLHELCHNDI-APHDAKFYKLWEELREECDELRS   85 (316)
Q Consensus        28 ~~I~LRLR~~~~~~~-flP~~~I~~vllHELaH~~~-~~H~~~Fy~ll~~l~~e~~~l~~   85 (316)
                      .+|.|+++....-.. -.....|..||.|||+|++. .+++..+.-|++.+ .||..+.+
T Consensus        74 ~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~~~~~P~~liEGI-ADyVRl~a  132 (205)
T PF04450_consen   74 KEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDGRGTAPGGLIEGI-ADYVRLKA  132 (205)
T ss_pred             cEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCCCCCCChhheecH-HHHHHHHc
Confidence            789999987642211 12236899999999999997 45889999988876 45666665

>PRK03072 heat shock protein HtpX; Provisional

Probab=84.97  E-value=0.57  Score=44.99  Aligned_cols=25  Identities=24%  Similarity=0.046  Sum_probs=21.4

Q ss_pred             CCChHHHHHHHHHHhhhcCCCCCCh
Q 038987           43 SLPFHEVLDTMLHELCHNDIAPHDA   67 (316)
Q Consensus        43 flP~~~I~~vllHELaH~~~~~H~~   67 (316)
                      .++.++|..||.|||+|+++++--.
T Consensus       121 ~l~~~El~aVlAHElgHi~~~d~~~  145 (288)
T PRK03072        121 ILNERELRGVLGHELSHVYNRDILI  145 (288)
T ss_pred             hCCHHHHHHHHHHHHHHHhcCCHHH
Confidence            5688999999999999999876543

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=83.62  E-value=0.86  Score=44.26  Aligned_cols=53  Identities=21%  Similarity=0.451  Sum_probs=36.3

Q ss_pred             CCCCccccCcceeccCC----CCCCCCCCCCC---------CCCCceeeccCCcccCcCccccccC
Q 038987          262 EEPAMWECKACTFLNHG----CGSVPHQGDAS---------ANDRVWTCKFWTLENCVKLDKCSRV  314 (316)
Q Consensus       262 ~~~~~W~C~~CTllN~~----C~~C~rPr~~~---------~~~~~WsC~~CT~~N~~~~~~C~~C  314 (316)
                      -..+.|.|+.|+|+|-.    |--|..++...         .....|.++-+-.-+.....-|..|
T Consensus       136 ~~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~  201 (280)
T KOG4198|consen  136 WRSGDWECPGCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRC  201 (280)
T ss_pred             ccccCcccCCCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccchhh
Confidence            35579999999999999    77775554331         2445688888776655555555544

>PRK01265 heat shock protein HtpX; Provisional

Probab=83.41  E-value=1.2  Score=44.00  Aligned_cols=42  Identities=29%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCC
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPH   65 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H   65 (316)
                      ..|.+... ..|.|.--.-    ..++.++|..||.|||.|++|++=
T Consensus       115 a~G~~~~~-~~Ivvt~gLl----~~l~~~El~aVlAHElgHik~~d~  156 (324)
T PRK01265        115 AYGSPIAG-KRIAITLPLL----KILNRDEIKAVAGHELGHLKHRDV  156 (324)
T ss_pred             EeccCCCC-CEEEEehHHH----hhCCHHHHHHHHHHHHHHHHcccH
Confidence            45655444 3566654443    257889999999999999987654

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=83.41  E-value=0.98  Score=35.65  Aligned_cols=24  Identities=17%  Similarity=-0.018  Sum_probs=19.2

Q ss_pred             CChHHHHHHHHHHhhhcCCCCCCh
Q 038987           44 LPFHEVLDTMLHELCHNDIAPHDA   67 (316)
Q Consensus        44 lP~~~I~~vllHELaH~~~~~H~~   67 (316)
                      .+.+.+..|++|||+|.+++....
T Consensus        20 ~~~~~~~~~l~HE~~H~~~~~~~~   43 (128)
T PF13485_consen   20 SDEDWLDRVLAHELAHQWFGNYFG   43 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC
Confidence            556778899999999998775543

>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily

Probab=83.37  E-value=0.9  Score=42.50  Aligned_cols=27  Identities=37%  Similarity=0.421  Sum_probs=23.3

Q ss_pred             CCChHHHHHHHHHHhhhcCCCCCChhH
Q 038987           43 SLPFHEVLDTMLHELCHNDIAPHDAKF   69 (316)
Q Consensus        43 flP~~~I~~vllHELaH~~~~~H~~~F   69 (316)
                      ..|...+..||+|||-|+.-++||..-
T Consensus       161 ~~~~~~~a~t~AHElGHnlGm~HD~~~  187 (244)
T cd04270         161 RVPTKESDLVTAHELGHNFGSPHDPDI  187 (244)
T ss_pred             ccchhHHHHHHHHHHHHhcCCCCCCCC
Confidence            456667889999999999999999864

TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=82.82  E-value=0.64  Score=41.19  Aligned_cols=44  Identities=27%  Similarity=0.175  Sum_probs=31.6

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCCChh
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPHDAK   68 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H~~~   68 (316)
                      .+|.+.  +..|.|....-    ..++.+.+..||.|||+|+.+++.-..
T Consensus        65 ~~g~~~--~~~I~v~~~ll----~~~~~~el~aVlaHElgH~~~~h~~~~  108 (226)
T PF01435_consen   65 ATGGGP--RKRIVVTSGLL----ESLSEDELAAVLAHELGHIKHRHILKS  108 (226)
T ss_dssp             EETTTC----EEEEEHHHH----HHSSHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred             EEccCC--CcEEEEeChhh----hcccHHHHHHHHHHHHHHHHcCCcchH
Confidence            445443  44577766654    257889999999999999998877666

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 40/299 (13%), Positives = 85/299 (28%), Gaps = 75/299 (25%)

Query: 5   KW---KVKLL-SEMHSKNALG-SNLGAGVHI---------KLLLRKLNRDRESLPFHEVL 50
           K+   + + L  E+ + N    S +   +            +   KL    ES     VL
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVL 366

Query: 51  DTMLHELCHNDIA--PHDAK-----FYKLWEELREEC-----DELRSKGITGVGSFDRPG 98
           +   +    + ++  P  A         +W ++ +       ++L    +      ++  
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----VEK-- 419

Query: 99  RVLGGVSPQPPLSSLPQTALA----AAEKRAHSNSLL----------PSGPKLLGGDR-- 142
                  P+    S+P   L        + A   S++                   D+  
Sbjct: 420 ------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 143 --FVMYDLSPVQAAAMAVEKRLQY-DL-WCASQDLVDMGQNIGHSKIICGPITNALDTIS 198
              + + L  ++        R+ + D  +        + Q I H         + L+T+ 
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRF--------LEQKIRHDSTAWNASGSILNTLQ 525

Query: 199 RKRNRASNISSESNSVDLEAGTSTSEPMLNHNARTHKSCSGSVESSGALSSAFMRNSGA 257
           + +     I    N    E   +     L      +  CS   + +  L  A M    A
Sbjct: 526 QLKFYKPYIC--DNDPKYERLVNAILDFL-PKIEENLICS---KYTDLLRIALMAEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	98.98
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	98.57
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	98.06
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	98.05
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	97.85
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	97.69
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	97.63
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	97.62
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	97.57
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	97.54
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	97.41
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	97.38
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	97.36
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	97.16
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	96.7
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	96.46
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	96.15
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	95.68
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	95.53
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	94.84
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	94.66
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	94.61
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	94.13
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	93.75
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	92.0
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	90.94
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	86.76
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	86.22
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	85.36
2j9u_B	76	VPS36, vacuolar protein sorting-associated protein	85.24
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	84.47
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	81.93
2yrc_A	59	Protein transport protein SEC23A; zinc binding, co	81.29

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=98.98  E-value=1.1e-10  Score=94.62  Aligned_cols=54  Identities=19%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             CCCccccCcceeccCC----CCCCCCCCCCC-------------------------------CCCCceeeccCCcccCcC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQGDAS-------------------------------ANDRVWTCKFWTLENCVK  307 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr~~~-------------------------------~~~~~WsC~~CT~~N~~~  307 (316)
                      ..++|.|..||+.|++    |.+|..|+...                               .+...|.|++|||+|...
T Consensus         6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~~C~~~N~~~   85 (98)
T 3gj7_B            6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCDTCLVQNKPE   85 (98)
T ss_dssp             -----------------------------------------------------------------CCEECTTTCCEECTT
T ss_pred             CCCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCCcCcCCChhh
Confidence            3468999999999999    99998877421                               023579999999999999


Q ss_pred             ccccccCCC
Q 038987          308 LDKCSRVSK  316 (316)
Q Consensus       308 ~~~C~~C~~  316 (316)
                      ..+|.+|++
T Consensus        86 ~~~C~aC~t   94 (98)
T 3gj7_B           86 AVKCVACET   94 (98)
T ss_dssp             CSBCTTTCC
T ss_pred             cceecccCC
Confidence            999999986

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=98.57  E-value=1.7e-08  Score=80.48  Aligned_cols=53  Identities=23%  Similarity=0.556  Sum_probs=22.6

Q ss_pred             CCccccCcceeccCC----CCCCCCCCCCC-------------------------CCCCceeeccCCcccCcCccccccC
Q 038987          264 PAMWECKACTFLNHG----CGSVPHQGDAS-------------------------ANDRVWTCKFWTLENCVKLDKCSRV  314 (316)
Q Consensus       264 ~~~W~C~~CTllN~~----C~~C~rPr~~~-------------------------~~~~~WsC~~CT~~N~~~~~~C~~C  314 (316)
                      ...|.|..|+++|.+    |..|..|+...                         .+...|.|+.|++.|.....+|.+|
T Consensus         6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~~C~~~N~a~~~~C~~C   85 (92)
T 3gj8_B            6 VGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCEVCLVQNKADSTKCIAC   85 (92)
T ss_dssp             ----------------------------------------------------------CCEECTTTCCEECSSCSBCTTT
T ss_pred             CcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCCcCCcCChhhccccccc
Confidence            468999999999999    88887666321                         1235799999999999999999999


Q ss_pred             CC
Q 038987          315 SK  316 (316)
Q Consensus       315 ~~  316 (316)
                      ++
T Consensus        86 ~~   87 (92)
T 3gj8_B           86 ES   87 (92)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=98.06  E-value=1.7e-06  Score=55.80  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=22.8

Q ss_pred             CCceeeccCCcccCcCccccccCCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ...|+|+.|||.|......|+||++
T Consensus         4 ~~~W~C~~CTf~N~~~~~~Ce~C~~   28 (31)
T 1nj3_A            4 SAMWACQHCTFMNQPGTGHCEMCSL   28 (31)
T ss_dssp             SCCEECSSSCCEECSSCSSCSSSCC
T ss_pred             CccccCCcccccCCCCCCccCCcCC
Confidence            4579999999999999999999985

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=98.05  E-value=1.7e-06  Score=56.92  Aligned_cols=25  Identities=24%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             CCceeeccCCcccCcCccccccCCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ...|+|++|||.|+.....|+||++
T Consensus         6 ~~~W~C~~CT~~N~~~~~~Ce~C~~   30 (34)
T 3a9j_C            6 GAQWNCTACTFLNHPALIRCEQCEM   30 (34)
T ss_dssp             CCCEECTTTCCEECTTCSBCTTTCC
T ss_pred             CCcCCCCCCccccCCCCCeeCCCCC
Confidence            4579999999999999999999985

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=6.5e-06  Score=59.71  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=22.6

Q ss_pred             CCceeeccCCcccCcCccccccCCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ...|.|..|||+|+....+|+||++
T Consensus         9 ~~~W~C~~CT~~N~~~~~~C~~C~~   33 (53)
T 2d9g_A            9 EGYWDCSVCTFRNSAEAFKCMMCDV   33 (53)
T ss_dssp             CCCEECSSSCCEECSSCSSCSSSCC
T ss_pred             CCCcCCCCCccCCCCCCCccCCCCC
Confidence            3479999999999999999999985

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=97.69  E-value=1.4e-05  Score=52.58  Aligned_cols=25  Identities=44%  Similarity=0.911  Sum_probs=21.4

Q ss_pred             CCCccccCcceeccCC----CCCCCCCCC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQGD  287 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr~  287 (316)
                      ....|.|+.|||+|++    |..|..||.
T Consensus         5 ~~~~W~C~~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            5 MGAQWNCTACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred             CCCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence            3458999999999999    999988763

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=97.63  E-value=2e-05  Score=52.06  Aligned_cols=25  Identities=20%  Similarity=0.460  Sum_probs=22.3

Q ss_pred             CCceeeccCCcccCcCccccccCCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ..+|.|..|||.|.....+|.+|++
T Consensus         5 ~g~W~C~~C~~~N~~~~~kC~aC~t   29 (33)
T 3gj3_B            5 SGTWDCDTCLVQNKPEAVKCVACET   29 (33)
T ss_dssp             -CCEECTTTCCEECTTCSBCTTTCC
T ss_pred             CCceeCCcccCCCccccCEEcccCC
Confidence            4579999999999999999999985

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=97.62  E-value=2.5e-05  Score=56.57  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             CCceeeccCCcccCcCccccccCCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      +..|+|++|||.|......|+||++
T Consensus         8 ~~~W~Cp~CTf~N~p~~~~CemC~~   32 (52)
T 2crc_A            8 PVGWQCPGCTFINKPTRPGCEMCCR   32 (52)
T ss_dssp             SSSBCCTTTCCCBCTTCSSCSSSCC
T ss_pred             CCCccCCCcccccCCCCCeeCCCCC
Confidence            4579999999999999999999974

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=97.57  E-value=2.6e-05  Score=50.19  Aligned_cols=23  Identities=39%  Similarity=0.975  Sum_probs=20.5

Q ss_pred             CCccccCcceeccCC----CCCCCCCC
Q 038987          264 PAMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       264 ~~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      ...|.|+.|||+|++    |..|..||
T Consensus         4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred             CccccCCcccccCCCCCCccCCcCCCC
Confidence            358999999999999    99998776

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=97.54  E-value=1.2e-05  Score=82.33  Aligned_cols=54  Identities=19%  Similarity=0.378  Sum_probs=0.0

Q ss_pred             CCCccccCcceeccCC-------------CCCCCCCCCCC----------------------CCCCceeeccCCcccCcC
Q 038987          263 EPAMWECKACTFLNHG-------------CGSVPHQGDAS----------------------ANDRVWTCKFWTLENCVK  307 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~-------------C~~C~rPr~~~----------------------~~~~~WsC~~CT~~N~~~  307 (316)
                      ....|.|+.|.|-|+.             |..|.=+....                      +....-.|+.|||.|-+.
T Consensus       114 ~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPs  193 (566)
T 1w7p_D          114 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQ  193 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCCcccccCChh
Confidence            4568999999999994             88883322110                      011246799999999999


Q ss_pred             ccccccCCC
Q 038987          308 LDKCSRVSK  316 (316)
Q Consensus       308 ~~~C~~C~~  316 (316)
                      ...|||||+
T Consensus       194 l~~CEiCg~  202 (566)
T 1w7p_D          194 IGNCEICGH  202 (566)
T ss_dssp             ---------
T ss_pred             hhcccccCC
Confidence            999999985

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.41  E-value=0.00012  Score=52.99  Aligned_cols=26  Identities=27%  Similarity=0.756  Sum_probs=22.6

Q ss_pred             CCCccccCcceeccCC----CCCCCCCCCC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQGDA  288 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr~~  288 (316)
                      ....|.|+.|||+|++    |..|..||..
T Consensus         8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~   37 (53)
T 2d9g_A            8 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGT   37 (53)
T ss_dssp             CCCCEECSSSCCEECSSCSSCSSSCCCCCC
T ss_pred             CCCCcCCCCCccCCCCCCCccCCCCCcCCc
Confidence            3458999999999999    9999888864

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=97.38  E-value=7e-05  Score=56.39  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             CCceeeccCCcccCcCccccccCCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ...|+|++|||.|......|+||++
T Consensus         6 ~~~W~CP~CTf~N~p~~p~CEmC~~   30 (64)
T 3b08_B            6 PVGWQCPGCTFINKPTRPGCEMCCR   30 (64)
T ss_dssp             CCSEECTTTCCEECTTCSBCTTTCC
T ss_pred             CCCCcCCCccccCCCCCCccCcCCC
Confidence            3479999999999999999999985

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=97.36  E-value=5.9e-05  Score=49.83  Aligned_cols=24  Identities=21%  Similarity=0.663  Sum_probs=20.5

Q ss_pred             CCCccccCcceeccCC----CCCCCCCC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      ...+|.|+.|||.|++    |.+|+.|+
T Consensus         4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpk   31 (33)
T 3gj3_B            4 GSGTWDCDTCLVQNKPEAVKCVACETPK   31 (33)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred             CCCceeCCcccCCCccccCEEcccCCCC
Confidence            4578999999999999    99998876

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=97.16  E-value=0.00023  Score=51.48  Aligned_cols=24  Identities=29%  Similarity=0.769  Sum_probs=20.7

Q ss_pred             CccccCcceeccCC----CCCCCCCCCC
Q 038987          265 AMWECKACTFLNHG----CGSVPHQGDA  288 (316)
Q Consensus       265 ~~W~C~~CTllN~~----C~~C~rPr~~  288 (316)
                      ..|.|+.|||+|++    |+.|..|+..
T Consensus         9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~   36 (52)
T 2crc_A            9 VGWQCPGCTFINKPTRPGCEMCCRARPE   36 (52)
T ss_dssp             SSBCCTTTCCCBCTTCSSCSSSCCCCCT
T ss_pred             CCccCCCcccccCCCCCeeCCCCCcCCc
Confidence            48999999999999    9999777643

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=96.70  E-value=0.00071  Score=44.96  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=22.3

Q ss_pred             CCceeeccCCcccCcCccccccCCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ...|.|..|++.|.....+|.+|++
T Consensus         5 ~G~W~C~~C~v~N~~~~~kC~aCet   29 (34)
T 3gj5_B            5 SGSWDCEVCLVQNKADSTKCIACES   29 (34)
T ss_dssp             -CCEECTTTCCEECSSCSBCTTTCC
T ss_pred             CCceECCeeEeECccccCEEcccCC
Confidence            3479999999999999999999985

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=96.46  E-value=0.0011  Score=49.96  Aligned_cols=24  Identities=29%  Similarity=0.769  Sum_probs=20.8

Q ss_pred             CccccCcceeccCC----CCCCCCCCCC
Q 038987          265 AMWECKACTFLNHG----CGSVPHQGDA  288 (316)
Q Consensus       265 ~~W~C~~CTllN~~----C~~C~rPr~~  288 (316)
                      ..|.|+.|||+|++    |..|..|+..
T Consensus         7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~   34 (64)
T 3b08_B            7 VGWQCPGCTFINKPTRPGCEMCCRARPE   34 (64)
T ss_dssp             CSEECTTTCCEECTTCSBCTTTCCBCCS
T ss_pred             CCCcCCCccccCCCCCCccCcCCCCCCc
Confidence            47999999999999    9999777644

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.15  E-value=0.0029  Score=44.84  Aligned_cols=26  Identities=19%  Similarity=0.348  Sum_probs=22.8

Q ss_pred             CCCceeeccCCcccCcCccccccCCC
Q 038987          291 NDRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       291 ~~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ....|.|..|++.|.....+|.+|++
T Consensus         8 ~~g~W~C~~C~v~N~a~~~kC~aCet   33 (47)
T 2ebq_A            8 VIGTWDCDTCLVQNKPEAIKCVACET   33 (47)
T ss_dssp             CSSSEECSSSCCEECSSCSBCSSSCC
T ss_pred             CCCceECCeeeccCccCCceecCcCC
Confidence            44579999999999999999999985

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=95.68  E-value=0.004  Score=41.33  Aligned_cols=25  Identities=20%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             CCCccccCcceeccCC----CCCCCCCCC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQGD  287 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr~  287 (316)
                      ...+|.|..|++.|.+    |.+|+.|+.
T Consensus         4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kp   32 (34)
T 3gj5_B            4 GSGSWDCEVCLVQNKADSTKCIACESAKP   32 (34)
T ss_dssp             --CCEECTTTCCEECSSCSBCTTTCCBC-
T ss_pred             CCCceECCeeEeECccccCEEcccCCcCC
Confidence            4578999999999999    999988763

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.53  E-value=0.0066  Score=42.96  Aligned_cols=26  Identities=19%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             CCCceeeccCCcccCcCccccccCCC
Q 038987          291 NDRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       291 ~~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ....|.|..|.+.|.....+|.+|++
T Consensus         8 ~~gsW~C~~C~v~N~a~~~kC~aC~~   33 (47)
T 2ebr_A            8 PEGSWDCELCLVQNKADSTKCLACES   33 (47)
T ss_dssp             CCSSCCCSSSCCCCCSSCSBCSSSCC
T ss_pred             CCCeeECCeeecCCcCCcceecCcCC
Confidence            34579999999999999999999975

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.84  E-value=0.017  Score=40.91  Aligned_cols=27  Identities=19%  Similarity=0.555  Sum_probs=22.8

Q ss_pred             CCCccccCcceeccCC----CCCCCCCCCCC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQGDAS  289 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr~~~  289 (316)
                      ....|.|..|++.|..    |.+|+-|+...
T Consensus         8 ~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs   38 (47)
T 2ebq_A            8 VIGTWDCDTCLVQNKPEAIKCVACETPKPGT   38 (47)
T ss_dssp             CSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred             CCCceECCeeeccCccCCceecCcCCCCCCC
Confidence            3468999999999999    99998887543

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.66  E-value=0.027  Score=39.84  Aligned_cols=26  Identities=19%  Similarity=0.617  Sum_probs=22.4

Q ss_pred             CCccccCcceeccCC----CCCCCCCCCCC
Q 038987          264 PAMWECKACTFLNHG----CGSVPHQGDAS  289 (316)
Q Consensus       264 ~~~W~C~~CTllN~~----C~~C~rPr~~~  289 (316)
                      ...|.|..|.+.|..    |.+|+.|+...
T Consensus         9 ~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~   38 (47)
T 2ebr_A            9 EGSWDCELCLVQNKADSTKCLACESAKPGT   38 (47)
T ss_dssp             CSSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred             CCeeECCeeecCCcCCcceecCcCCCCCCC
Confidence            468999999999999    99998887553

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=94.61  E-value=0.011  Score=47.44  Aligned_cols=24  Identities=21%  Similarity=0.632  Sum_probs=20.7

Q ss_pred             CCCccccCcceeccCC----CCCCCCCC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      ...+|.|..|||.|..    |.+|+.|+
T Consensus        69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpk   96 (98)
T 3gj7_B           69 AIGTWDCDTCLVQNKPEAVKCVACETPK   96 (98)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred             CCCcccCCcCcCCChhhcceecccCCCC
Confidence            3578999999999999    99999886

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.13  E-value=0.07  Score=39.17  Aligned_cols=23  Identities=30%  Similarity=0.709  Sum_probs=16.3

Q ss_pred             CCccccCcceeccCC----CCCCCCCC
Q 038987          264 PAMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       264 ~~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      ...|.|..|.+.|..    |.+|+-|+
T Consensus        29 ~GsWeC~~C~V~N~a~~~kC~ACetpK   55 (57)
T 2ebv_A           29 IGSWECSVCCVSNNAEDNKCVSCMSEK   55 (57)
T ss_dssp             SSSCCCSSSCCCCCSSCSBCSSSCCBC
T ss_pred             CCeeeCCeeEccCccCCceeeEcCCcC
Confidence            457777777777777    77776654

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.75  E-value=0.032  Score=40.99  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=23.6

Q ss_pred             CCCceeeccCCcccCcCccccccCCC
Q 038987          291 NDRVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       291 ~~~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      ....|.|..|.+.|.....+|.+|++
T Consensus        28 ~~GsWeC~~C~V~N~a~~~kC~ACet   53 (57)
T 2ebv_A           28 PIGSWECSVCCVSNNAEDNKCVSCMS   53 (57)
T ss_dssp             CSSSCCCSSSCCCCCSSCSBCSSSCC
T ss_pred             CCCeeeCCeeEccCccCCceeeEcCC
Confidence            44579999999999999999999985

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.00  E-value=0.048  Score=43.55  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=28.3

Q ss_pred             ccccccCCccEEEEeeecCCCCCCCCChHHHHHHHHHHhhhcCCCCC
Q 038987           19 ALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHNDIAPH   65 (316)
Q Consensus        19 lLGlN~N~G~~I~LRLR~~~~~~~flP~~~I~~vllHELaH~~~~~H   65 (316)
                      .+|...+ +..|.|..-...    .++.+.|..||.|||+|+.++++
T Consensus        58 ~~g~~~~-~~~i~v~~gLl~----~l~~~El~aVlaHElgH~~~~h~   99 (107)
T 3cqb_A           58 ATGAKRD-DSLVAVSTGLLH----NMTRDEAEAVLAHEVSHIANGDM   99 (107)
T ss_dssp             EECCC---CCEEEEEHHHHH----HSCHHHHHHHHHHHHHHHHTTCE
T ss_pred             EEecCCC-CCEEEEcHHHHh----hCCHHHHHHHHHHHHHHHHCCCH
Confidence            5564433 335666654331    35889999999999999998764

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=90.94  E-value=0.082  Score=41.61  Aligned_cols=24  Identities=21%  Similarity=0.657  Sum_probs=20.8

Q ss_pred             CCccccCcceeccCC----CCCCCCCCC
Q 038987          264 PAMWECKACTFLNHG----CGSVPHQGD  287 (316)
Q Consensus       264 ~~~W~C~~CTllN~~----C~~C~rPr~  287 (316)
                      ...|.|+.|++.|+.    |..|..|+.
T Consensus        63 ~g~W~C~~C~~~N~a~~~~C~~C~~pkp   90 (92)
T 3gj8_B           63 EGSWDCEVCLVQNKADSTKCIACESAKP   90 (92)
T ss_dssp             -CCEECTTTCCEECSSCSBCTTTCCBCC
T ss_pred             CCcccCCcCCcCChhhcccccccCCCCC
Confidence            478999999999999    999988864

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=86.76  E-value=0.13  Score=52.79  Aligned_cols=21  Identities=43%  Similarity=0.776  Sum_probs=0.0

Q ss_pred             CccccCcceeccCC----CCCCCCC
Q 038987          265 AMWECKACTFLNHG----CGSVPHQ  285 (316)
Q Consensus       265 ~~W~C~~CTllN~~----C~~C~rP  285 (316)
                      +.-+||.|||+|+|    |+.|..|
T Consensus       179 ~~~~CP~CTF~NHPsl~~CEiCg~~  203 (566)
T 1w7p_D          179 SENICPACTFANHPQIGNCEICGHR  203 (566)
T ss_dssp             -------------------------
T ss_pred             cCCCCCcccccCChhhhcccccCCc
Confidence            35679999999999    9999544

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=86.22  E-value=0.49  Score=30.64  Aligned_cols=23  Identities=26%  Similarity=0.700  Sum_probs=16.9

Q ss_pred             CccccCcceeccCC----CCCCCCCCC
Q 038987          265 AMWECKACTFLNHG----CGSVPHQGD  287 (316)
Q Consensus       265 ~~W~C~~CTllN~~----C~~C~rPr~  287 (316)
                      .-|.|+.|-.+|..    |-.|..|+.
T Consensus         5 gDW~C~~C~~~Nfa~R~~C~~C~~pk~   31 (33)
T 2k1p_A            5 NDWQCKTCSNVNWARRSECNMCNTPKY   31 (33)
T ss_dssp             SSCBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred             CCcccCCCCCccccccccccccCCcCC
Confidence            45888888888877    777766653

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=85.36  E-value=0.33  Score=31.26  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=11.4

Q ss_pred             CccccCcceeccCC----CCCCCCCC
Q 038987          265 AMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       265 ~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      ..|.|+.|.++|..    |-.|..|+
T Consensus         4 gDW~C~~C~~~Nfa~r~~C~~C~~pr   29 (32)
T 2lk0_A            4 EDWLCNKCCLNNFRKRLKCFRCGADK   29 (32)
T ss_dssp             SEEECTTTCCEEETTCCBCTTTCCBT
T ss_pred             CCCCcCcCcCCcChhcceecCCCCcC
Confidence            34555555555555    55554443

>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1

Probab=85.24  E-value=0.26  Score=38.07  Aligned_cols=15  Identities=27%  Similarity=0.736  Sum_probs=10.0

Q ss_pred             CCccccCcceeccCC
Q 038987          264 PAMWECKACTFLNHG  278 (316)
Q Consensus       264 ~~~W~C~~CTllN~~  278 (316)
                      ...|.|+.|.|.|+.
T Consensus        15 ~~tWVCpICsfsN~v   29 (76)
T 2j9u_B           15 VSTWVCPICMVSNET   29 (76)
T ss_dssp             CEEEECTTTCCEEEE
T ss_pred             ccceECccccccCcC
Confidence            346777777777666

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=84.47  E-value=0.4  Score=30.84  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=21.9

Q ss_pred             CceeeccCCcccCcCccccccCCC
Q 038987          293 RVWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       293 ~~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      .-|.|..|.+.|...-..|-.|++
T Consensus         4 gDW~C~~C~~~Nfa~r~~C~~C~~   27 (32)
T 2lk0_A            4 EDWLCNKCCLNNFRKRLKCFRCGA   27 (32)
T ss_dssp             SEEECTTTCCEEETTCCBCTTTCC
T ss_pred             CCCCcCcCcCCcChhcceecCCCC
Confidence            359999999999999999999984

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=81.93  E-value=0.73  Score=29.82  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=21.4

Q ss_pred             ceeeccCCcccCcCccccccCCC
Q 038987          294 VWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       294 ~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      -|.|..|...|...-..|-.|++
T Consensus         6 DW~C~~C~~~Nfa~R~~C~~C~~   28 (33)
T 2k1p_A            6 DWQCKTCSNVNWARRSECNMCNT   28 (33)
T ss_dssp             SCBCSSSCCBCCTTCSBCSSSCC
T ss_pred             CcccCCCCCccccccccccccCC
Confidence            59999999999999999999974

>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A

Probab=81.29  E-value=0.58  Score=34.22  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=26.6

Q ss_pred             CccccCc--c-eeccCCCCCCCCCCCCCCCCCceeeccCCcccCcCc
Q 038987          265 AMWECKA--C-TFLNHGCGSVPHQGDASANDRVWTCKFWTLENCVKL  308 (316)
Q Consensus       265 ~~W~C~~--C-TllN~~C~~C~rPr~~~~~~~~WsC~~CT~~N~~~~  308 (316)
                      ..=.|..  | +|+|+-|.. .      ...+.|.|.+|...|....
T Consensus         8 ~pvRC~r~~CraylNP~~~~-~------~~~~~W~C~~C~~~N~~P~   47 (59)
T 2yrc_A            8 EPVLCSRTTCRAVLNPLCQV-D------YRAKLWACNFCYQRNQFPP   47 (59)
T ss_dssp             CCCBCSCTTTCCBCCTTSEE-E------GGGTEEECSSSCCEEECCS
T ss_pred             CCcccCCCCCCeEECCceEE-E------CCCCEEEcccCCCcCCCCH
Confidence            3456776  7 688888776 2      1235799999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.91
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.78
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	95.42
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	95.09
d2i47a1	254	TNF-alpha converting enzyme, TACE, catalytic domai	82.7
d1kufa_	201	Snake venom metalloprotease {Taiwan habu (Trimeres	80.06

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=2.2e-06  Score=53.70  Aligned_cols=24  Identities=25%  Similarity=0.567  Sum_probs=21.0

Q ss_pred             CCceeeccCCcccCcCccccccCC
Q 038987          292 DRVWTCKFWTLENCVKLDKCSRVS  315 (316)
Q Consensus       292 ~~~WsC~~CT~~N~~~~~~C~~C~  315 (316)
                      ...|+|++|||.|.+..+.|+||.
T Consensus         4 samWsC~HCTf~N~pgtd~CeMC~   27 (31)
T d1q5wa_           4 SAMWACQHCTFMNQPGTGHCEMCS   27 (31)
T ss_dssp             CCCEECSSSCCEECTTCSBCTTTC
T ss_pred             cceeEeeeeeeecCCCCCcchhhc
Confidence            346999999999999999999995

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=5.1e-06  Score=51.98  Aligned_cols=24  Identities=38%  Similarity=0.933  Sum_probs=20.4

Q ss_pred             CCCccccCcceeccCC----CCCCCCCC
Q 038987          263 EPAMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       263 ~~~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      ..++|.|..|||+|.+    |+.|.-||
T Consensus         3 ~samWsC~HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           3 TSAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCCCEECSSSCCEECTTCSBCTTTCCBC
T ss_pred             ccceeEeeeeeeecCCCCCcchhhccCC
Confidence            4579999999999999    88877665

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0033  Score=38.85  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             ceeeccCCcccCcCccccccCCC
Q 038987          294 VWTCKFWTLENCVKLDKCSRVSK  316 (316)
Q Consensus       294 ~WsC~~CT~~N~~~~~~C~~C~~  316 (316)
                      .|.|..|.+.|.....+|.+|.+
T Consensus         4 sWeC~~C~v~N~~~~~~CvAC~t   26 (29)
T d2gqea1           4 TWDCDTCLVQNKPEAIKCVACET   26 (29)
T ss_dssp             CEECSSSCCEECTTCSBCSSSCC
T ss_pred             eeECCceEeEChhhCCEEeecCC
Confidence            59999999999999999999975

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0043  Score=38.32  Aligned_cols=23  Identities=22%  Similarity=0.660  Sum_probs=20.4

Q ss_pred             CCccccCcceeccCC----CCCCCCCC
Q 038987          264 PAMWECKACTFLNHG----CGSVPHQG  286 (316)
Q Consensus       264 ~~~W~C~~CTllN~~----C~~C~rPr  286 (316)
                      .+.|+|..|.+.|..    |.+|+.|+
T Consensus         2 ~GsWeC~~C~v~N~~~~~~CvAC~tpk   28 (29)
T d2gqea1           2 IGTWDCDTCLVQNKPEAIKCVACETPK   28 (29)
T ss_dssp             CCCEECSSSCCEECTTCSBCSSSCCBC
T ss_pred             cceeECCceEeEChhhCCEEeecCCCC
Confidence            367999999999999    99998775

>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: TNF-alpha converting enzyme, TACE, catalytic domain
domain: TNF-alpha converting enzyme, TACE, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.70  E-value=0.3  Score=41.20  Aligned_cols=25  Identities=36%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             CChHHHHHHHHHHhhhcCCCCCChh
Q 038987           44 LPFHEVLDTMLHELCHNDIAPHDAK   68 (316)
Q Consensus        44 lP~~~I~~vllHELaH~~~~~H~~~   68 (316)
                      .+...+..||+|||.|+.-++||..
T Consensus       175 ~~~~~~~~~~AHElGH~lG~~HD~~  199 (254)
T d2i47a1         175 ILTKEADLVTTHELGHNFGAEHDPD  199 (254)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             cchHHHHHHHHHHHHhhcCCCCCCC
Confidence            4556788999999999999999963

>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]

Probab=80.06  E-value=0.43  Score=38.93  Aligned_cols=21  Identities=48%  Similarity=0.395  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhhhcCCCCCCh
Q 038987           47 HEVLDTMLHELCHNDIAPHDA   67 (316)
Q Consensus        47 ~~I~~vllHELaH~~~~~H~~   67 (316)
                      -..-.||+|||.|+.-++||.
T Consensus       134 ~~~a~~~AHElGH~lG~~HD~  154 (201)
T d1kufa_         134 FMVAVTMTHELGHNLGMEHDD  154 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCC
Confidence            456678999999999999984