Citrus Sinensis ID: 039000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIihkprerssfTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNsinddeanskgwlglkvdrsnadtiaHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRamprrklkRETVSKyadtsnpnksdmreldeiqpepltVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ
Flexible Loop (DISEMBL)
marirdrtedfkdvvrhtavslgydeskLAAIMASFIihkprersSFTKAALKTLESVGALEQFILNHRKDYVEMHRtseqerdsieHEVTAFIKTCKEKIDILQNsinddeanskGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQdainramprrklkretvskyadtsnpnksdmrelDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ
Low Complexity Region (SEG)
MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ
Disordered region (IsUnstruct)
***********KDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVE************EHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI****************************************************LQVELTSLLDAVQQ***KMVEMSALNHLMSTHILHQ**********
Disordered Region (DISOPRED)
**RIRDRTEDFKDVVR********************************KAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQN************************IAHKHGVVLILSEKLHSVTAQFD********************************************************************************KMVEMSALNHLMSTHILHQAKQ*******
Disordered Region (DISEMBL)
MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEM**********IEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ
Disordered Region (DISPRO)
*****DRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEA****WL*****RSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAM********************************EPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFxxxxxxxxxxxxxxxxxxxxxSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
P59277	310	Syntaxin-81 OS=Arabidopsi	yes	no	0.980	0.829	0.690	4e-99
Q4VBI7	314	Syntaxin-18 OS=Danio reri	yes	no	0.767	0.640	0.268	3e-17
Q9P2W9	335	Syntaxin-18 OS=Homo sapie	yes	no	0.778	0.608	0.245	2e-13
Q5REB4	335	Syntaxin-18 OS=Pongo abel	yes	no	0.778	0.608	0.245	2e-13
Q68FW4	334	Syntaxin-18 OS=Rattus nor	yes	no	0.793	0.622	0.253	8e-13
Q8VDS8	334	Syntaxin-18 OS=Mus muscul	yes	no	0.793	0.622	0.238	1e-12

>sp|P59277|SYP81_ARATH Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 SV=2

 Score =  360 bits (925), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 185/268 (69%), Positives = 219/268 (81%), Gaps = 11/268 (4%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           M+R RDRTEDFKD VR++AVS+GY+ESK+A+ MASFIIHKP+ERS FTKAA KTL+S+  
Sbjct: 1   MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LE F+L HRKDYV++HRT+EQE+DSIE EV AFIK CKE+IDIL NSI ++EANSKGWLG
Sbjct: 61  LELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
           L  D  NAD+IAHKHGVVLILSEKLHSVTAQFDQ+RA RFQD INRAMPRRK KR  V K
Sbjct: 121 LPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKR--VIK 178

Query: 181 YADTSNPNKSDMRELDEIQPEPL------TVQQQLLDDETRALQVELTSLLDAVQQTETK 234
            A    P  + +   + I+P+ +        QQQLLDDET+ALQVEL++LLD  +QTETK
Sbjct: 179 EA---TPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETK 235

Query: 235 MVEMSALNHLMSTHILHQAKQIEHLYEQ 262
           MVEMSALNHLM+TH+L QA+QIE LY+Q
Sbjct: 236 MVEMSALNHLMATHVLQQAQQIEFLYDQ 263

Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4VBI7|STX18_DANRE Syntaxin-18 OS=Danio rerio GN=stx18 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 122/246 (49%), Gaps = 45/246 (18%)

Query: 40  KPRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVT 91
           +PR+R SF+  A + + ++  L+ F+L HRKDYV        E+ R ++ ERD I+ +  
Sbjct: 41  RPRQRDSFSCKAREVISNISKLKDFLLQHRKDYVNAGSVMSSEVSRMTDSERDQIDQDAQ 100

Query: 92  AFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQ 151
            F++TC E I  L++ ++      K  + ++V         H+  V+ ++   L  V   
Sbjct: 101 IFMRTCAEAISQLRSEMD------KKQVSMQVK-------DHRAAVLDLIDSYLKGVCKL 147

Query: 152 FDQMRAIRFQDAINRAMPRRKLKR------ETVSKYADTSNPNKS----------DMREL 195
           + + RA+R    + R + +++L R       T  + +D    +K           + R  
Sbjct: 148 YSEQRAVR----VKRVVDKKRLSRLEPEQINTEKRQSDGEENDKPVSDGNVDLWEENRVE 203

Query: 196 DEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQ 255
           D++ PE +    Q+ + E + L  E+ SLLD V+Q E K+VE+S L  + S  +L Q  +
Sbjct: 204 DDLSPEEI----QMFEQENQRLVGEMNSLLDEVRQIEGKVVEISRLQEIFSEKVLQQETE 259

Query: 256 IEHLYE 261
           I+ +++
Sbjct: 260 IDSIHQ 265

Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

Danio rerio (taxid: 7955)

>sp|Q9P2W9|STX18_HUMAN Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 57/261 (21%)

Query: 41  PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
           PR +  F+  A + +  +G L  F+L HRKDY+        E  R ++ ERD I+ +   
Sbjct: 43  PRPKGDFSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQI 102

Query: 93  FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
           F++TC E I  L+   +  E +S+                H+  V+  + + L  V   +
Sbjct: 103 FMRTCSEAIQQLRTEAH-KEIHSQ------------QVKEHRTAVLDFIEDYLKRVCKLY 149

Query: 153 DQMRAIRFQDAINRAM-----PRRKLK-RETVSKYADTSNPNK----------------- 189
            + RAIR +  +++       P    K RE+ S    + +P+K                 
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKVSQSPSKDSEENPATEERPEKILA 209

Query: 190 ---------SDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
                     D +  DE+ PE +    Q+ + E + L  E+ SL D V+Q E ++VE+S 
Sbjct: 210 ETQPELGTWGDGKGEDELSPEEI----QMFEQENQRLIGEMNSLFDEVRQIEGRVVEISR 265

Query: 241 LNHLMSTHILHQAKQIEHLYE 261
           L  + +  +L Q  +I+ +++
Sbjct: 266 LQEIFTEKVLQQEAEIDSIHQ 286

Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

Homo sapiens (taxid: 9606)

>sp|Q5REB4|STX18_PONAB Syntaxin-18 OS=Pongo abelii GN=STX18 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 57/261 (21%)

Query: 41  PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
           PR +  F+  A + +  +G L  F+L HRKDY+        E  R ++ ERD I+ +   
Sbjct: 43  PRPKGDFSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQI 102

Query: 93  FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
           F++TC E I  L+   +  E +S+                H+  V+  + + L  V   +
Sbjct: 103 FMRTCSEAIQQLRTEAH-KEIHSQ------------QVKEHRTAVLDFIEDYLKRVCKLY 149

Query: 153 DQMRAIRFQDAINRAM-----PRRKLK-RETVSKYADTSNPNK----------------- 189
            + RAIR +  +++       P    K RE+ S    + +P+K                 
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKVSRSPSKDSEENPATEERPEKILA 209

Query: 190 ---------SDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
                     D +  DE+ PE +    Q+ + E + L  E+ SL D V+Q E ++VE+S 
Sbjct: 210 ETQPELGTWGDGKGEDELSPEEI----QMFEQENQRLIGEMNSLFDEVRQIEGRVVEISR 265

Query: 241 LNHLMSTHILHQAKQIEHLYE 261
           L  + +  +L Q  +I+ +++
Sbjct: 266 LQEIFTEKVLQQEAEIDSIHQ 286

Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

Pongo abelii (taxid: 9601)

>sp|Q68FW4|STX18_RAT Syntaxin-18 OS=Rattus norvegicus GN=Stx18 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 48/256 (18%)

Query: 41  PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
           PR +  F+  A + +  +G L  F+L HRK+Y+        E  R ++ ERD I+ +   
Sbjct: 43  PRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSEYGRMTDTERDQIDQDAQI 102

Query: 93  FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
           F++TCK+ I  L+   +  E +S+                H+  V+  + + L  V   +
Sbjct: 103 FMRTCKDAIQQLRTEAH-KEIHSQ------------QVKEHRTAVLDFVEDYLKRVCKLY 149

Query: 153 DQMRAIRFQDAINRAM-----PRRKLKRETVSKYADTSN--------PNKSDMRE--LDE 197
            + RAIR +  +++       P    KR+  +    + N        P   D+ E  L E
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPAAEDLPEKPLAE 209

Query: 198 IQPEPLTV------------QQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLM 245
            QPE  T             + Q+ + E + L  E+ SL D V+Q E K+VE+S L  + 
Sbjct: 210 SQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIF 269

Query: 246 STHILHQAKQIEHLYE 261
           +  +L Q  +I+ +++
Sbjct: 270 TEKVLQQETEIDSIHQ 285

Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q8VDS8|STX18_MOUSE Syntaxin-18 OS=Mus musculus GN=Stx18 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 48/256 (18%)

Query: 41  PRERSSFTKAALKTLESVGALEQFILNHRKDYVEMH--------RTSEQERDSIEHEVTA 92
           PR +  F+  A + +  +G L  F+L HRK+Y+  +        R ++ ERD I+ +   
Sbjct: 43  PRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSDYGRMTDTERDQIDQDAQI 102

Query: 93  FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
           FI+TC E I  L+   +  E +S+                H+  V+  + + L  V   +
Sbjct: 103 FIRTCSEAIHQLRTEAH-KEIHSQ------------QVKEHRTAVLDFVDDYLKRVCKLY 149

Query: 153 DQMRAIRFQDAINR-------AMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTV 205
            + RAIR +  +++         P  K K  T  K    ++ +       +E+  +PL  
Sbjct: 150 SEQRAIRVKRVVDKKRLSKLEPEPHTKRKDSTSEKAPQNASQDSEGKPAAEELPEKPLAE 209

Query: 206 QQ--------------------QLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLM 245
            Q                    Q+ + E + L  E+ SL D V+Q E K+VE+S L  + 
Sbjct: 210 SQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIF 269

Query: 246 STHILHQAKQIEHLYE 261
           +  +L Q  +I+ +++
Sbjct: 270 TEKVLQQETEIDSIHQ 285

Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224112613	311	predicted protein [Populus trichocarpa]	1.0	0.842	0.799	1e-120
255564009	309	Syntaxin-81, putative [Ricinus communis]	1.0	0.847	0.774	1e-115
296086109	309	unnamed protein product [Vitis vinifera]	1.0	0.847	0.759	1e-114
358248560	309	uncharacterized protein LOC100801587 [Gl	1.0	0.847	0.736	1e-113
356549565	309	PREDICTED: syntaxin-81-like [Glycine max	1.0	0.847	0.740	1e-112
388499818	309	unknown [Lotus japonicus]	1.0	0.847	0.744	1e-112
449441332	308	PREDICTED: syntaxin-81-like [Cucumis sat	0.996	0.847	0.736	1e-110
388518669	306	unknown [Lotus japonicus]	0.988	0.846	0.732	1e-109
224098503	301	predicted protein [Populus trichocarpa]	0.961	0.837	0.727	1e-107
297847548	310	hypothetical protein ARALYDRAFT_892151 [	0.988	0.835	0.718	1e-104

>gi|224112613|ref|XP_002316241.1| predicted protein [Populus trichocarpa] gi|222865281|gb|EEF02412.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/264 (79%), Positives = 237/264 (89%), Gaps = 2/264 (0%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           MA+IRDRTEDFKD VRHTAVSLGY+E+KLAAIMASFIIHKPR+RS FTKAALKTLES+GA
Sbjct: 1   MAKIRDRTEDFKDAVRHTAVSLGYNEAKLAAIMASFIIHKPRQRSPFTKAALKTLESIGA 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LEQF+L HRKDYV++HRT+EQERDSIE EVTAFIK CKE+IDIL++SIN++EAN+KGWLG
Sbjct: 61  LEQFMLKHRKDYVDLHRTTEQERDSIEQEVTAFIKACKEQIDILKDSINNEEANTKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRET--V 178
           +K D SNADTIAHKHGVVLILSEKLHSVTA+FDQ+RAIRFQDAIN+ +PRRK+ R     
Sbjct: 121 IKADTSNADTIAHKHGVVLILSEKLHSVTARFDQLRAIRFQDAINKRIPRRKVNRAANKN 180

Query: 179 SKYADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEM 238
           +   D+S  N  D  E DEIQPEPL VQQQLLDDETRALQVELTSLLDAVQ+TETKMVEM
Sbjct: 181 TSSVDSSKTNNLDFMEPDEIQPEPLRVQQQLLDDETRALQVELTSLLDAVQETETKMVEM 240

Query: 239 SALNHLMSTHILHQAKQIEHLYEQ 262
           SALNHLMSTH+L QA+QIE LYEQ
Sbjct: 241 SALNHLMSTHVLQQAQQIELLYEQ 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564009|ref|XP_002523004.1| Syntaxin-81, putative [Ricinus communis] gi|223537816|gb|EEF39434.1| Syntaxin-81, putative [Ricinus communis]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/262 (77%), Positives = 227/262 (86%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           MARIRDRTEDFKD VRHTAVSLGY+ESKLAAIMASFIIHKPR+RS FTKAAL TL S+  
Sbjct: 1   MARIRDRTEDFKDAVRHTAVSLGYNESKLAAIMASFIIHKPRQRSPFTKAALTTLGSIET 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LEQFIL HRKDYV++HRT+EQERDSIE EV AFIK CKE+ID L++SIND+EAN+KGWLG
Sbjct: 61  LEQFILKHRKDYVDLHRTTEQERDSIEQEVMAFIKACKEQIDFLKDSINDEEANTKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
           ++ D SNADT+AH+HGVVLILSEKLH VTAQFDQ+RA RFQDAIN+ +PRRK  R     
Sbjct: 121 IRTDSSNADTVAHEHGVVLILSEKLHFVTAQFDQLRARRFQDAINKRIPRRKPNRVVNPS 180

Query: 181 YADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
             D+S  N SD RE DEIQ EPL++QQQLLDDETRALQ ELTSLLDA QQTETK+VEMSA
Sbjct: 181 PIDSSKMNNSDRREPDEIQSEPLSIQQQLLDDETRALQAELTSLLDAAQQTETKIVEMSA 240

Query: 241 LNHLMSTHILHQAKQIEHLYEQ 262
           LNHLMSTH+L QA+QIE LYEQ
Sbjct: 241 LNHLMSTHVLQQAQQIEVLYEQ 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086109|emb|CBI31550.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/262 (75%), Positives = 233/262 (88%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           MA+IRDRTEDFKDVVR TA+SLGY+ESK+A+I++SFIIHKP +R+SFTKAALKTLES+  
Sbjct: 1   MAKIRDRTEDFKDVVRQTALSLGYNESKMASILSSFIIHKPLQRTSFTKAALKTLESIRT 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LEQFI+ HRKDYV+MHRT+EQERDSIEHEVT FIK CK++IDIL+NSI+ +EANS+GWLG
Sbjct: 61  LEQFIMQHRKDYVDMHRTTEQERDSIEHEVTIFIKACKDQIDILKNSISGEEANSRGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
           ++ D SNADTIAHKHGVVLILSE+LHSVTAQFDQ+RA RFQDAINR +PR+K+ R + S 
Sbjct: 121 IRGDHSNADTIAHKHGVVLILSERLHSVTAQFDQLRARRFQDAINRRIPRKKMNRVSSSN 180

Query: 181 YADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
             +      S++RE DE QPEPL VQQQLLDDETRALQVEL+SLLDAVQ+TET+MVEMSA
Sbjct: 181 ATEIPKSINSELREPDEPQPEPLRVQQQLLDDETRALQVELSSLLDAVQETETQMVEMSA 240

Query: 241 LNHLMSTHILHQAKQIEHLYEQ 262
           LNHLMSTHIL QA+QIE LYEQ
Sbjct: 241 LNHLMSTHILQQAQQIELLYEQ 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248560|ref|NP_001239902.1| uncharacterized protein LOC100801587 [Glycine max] gi|255641149|gb|ACU20852.1| unknown [Glycine max]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/262 (73%), Positives = 231/262 (88%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           M + RDRTEDFKD VRHTA SLGYDE+KLA++MASFIIHKP ++S F+KAALKTLES+G 
Sbjct: 1   MGKARDRTEDFKDAVRHTARSLGYDEAKLASVMASFIIHKPPQKSPFSKAALKTLESIGE 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           L+QF+L HRKDY ++HRT+E+ERDSIEHEV+ FIKTC+E+IDIL+NSIN +E  SKGWLG
Sbjct: 61  LDQFLLKHRKDYTDLHRTTEKERDSIEHEVSTFIKTCQEQIDILKNSINQEEETSKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
           +   +SNAD IAHKHGVVLILSE+LHSVTAQFDQ+RA+RFQDAIN+A+PRRKL R   + 
Sbjct: 121 IATTKSNADIIAHKHGVVLILSERLHSVTAQFDQLRAVRFQDAINKAIPRRKLNRVARND 180

Query: 181 YADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
            A+TS  +  ++RE +E++ EPL VQQQLLDDETRALQVELTSLLD VQ+TETKMVEMSA
Sbjct: 181 SAETSKSSDMELREPEELRAEPLRVQQQLLDDETRALQVELTSLLDTVQETETKMVEMSA 240

Query: 241 LNHLMSTHILHQAKQIEHLYEQ 262
           LNHLMSTH+LHQA+QIEHLY+Q
Sbjct: 241 LNHLMSTHVLHQAQQIEHLYDQ 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549565|ref|XP_003543163.1| PREDICTED: syntaxin-81-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/262 (74%), Positives = 229/262 (87%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           M + RDRTEDFKD VRHTA SLGYDE+KLA++MASFIIHKP +RS F+KAALKTLES+G 
Sbjct: 1   MGKARDRTEDFKDAVRHTARSLGYDEAKLASVMASFIIHKPPQRSPFSKAALKTLESIGE 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           L+QF+L HRKDY ++HRT+E+ERDSIEHEV+ FIKTC+E+IDIL+NSIN +E  SK WLG
Sbjct: 61  LDQFLLKHRKDYTDLHRTTEKERDSIEHEVSTFIKTCQEQIDILKNSINQEEETSKHWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
           +   +SNADTIAHKHGVVLILSE+LHSVTAQFDQ+RA+RFQDAIN+A+PRRKL R     
Sbjct: 121 IATTKSNADTIAHKHGVVLILSERLHSVTAQFDQLRAVRFQDAINKAIPRRKLNRVARKD 180

Query: 181 YADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
            A+TS     ++RE +E++ EPL VQQQLLDDETRALQVELTSLLD VQ+TETKMVEMSA
Sbjct: 181 SAETSKSGDMELREPEELRSEPLRVQQQLLDDETRALQVELTSLLDTVQETETKMVEMSA 240

Query: 241 LNHLMSTHILHQAKQIEHLYEQ 262
           LNHLMSTH+LHQA+QIEHLY+Q
Sbjct: 241 LNHLMSTHVLHQAQQIEHLYDQ 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499818|gb|AFK37975.1| unknown [Lotus japonicus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/262 (74%), Positives = 226/262 (86%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           MA+ RDRTEDFKD VRH+A SLGYDE+KLA+I+ASFIIHKP +RS F KAALKTLES+G 
Sbjct: 1   MAKARDRTEDFKDAVRHSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGE 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LEQF+L HRKDY ++HRT+EQERDSIE EV+AFIKTC+E+ID+L+NSIN++E  SKGWLG
Sbjct: 61  LEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNEEETSKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
               ++NADTIAHKHGVVLILSE+LH VTAQFDQ+RA+RFQDAINRA PRRKL R T   
Sbjct: 121 TATAKANADTIAHKHGVVLILSERLHPVTAQFDQLRAVRFQDAINRATPRRKLNRVTRKN 180

Query: 181 YADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
             +TS     ++RE DE++ EPL VQQQLLDDETRALQVELT+LLD VQ+TETKMVEMSA
Sbjct: 181 TTETSESGDMELREPDELRSEPLRVQQQLLDDETRALQVELTNLLDTVQETETKMVEMSA 240

Query: 241 LNHLMSTHILHQAKQIEHLYEQ 262
           LNHLMSTH+L QA QIEHLYEQ
Sbjct: 241 LNHLMSTHVLQQAHQIEHLYEQ 262

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441332|ref|XP_004138436.1| PREDICTED: syntaxin-81-like [Cucumis sativus] gi|449516645|ref|XP_004165357.1| PREDICTED: syntaxin-81-like [Cucumis sativus]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/262 (73%), Positives = 232/262 (88%), Gaps = 1/262 (0%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           MA+ RDRTEDFKDVVRH A+SLGY+ESKLAAIMASFII KPR+RS F KAALKTLES+GA
Sbjct: 1   MAKFRDRTEDFKDVVRHCAISLGYNESKLAAIMASFIIQKPRQRSPFIKAALKTLESIGA 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LE+F+L H+KDYV+M+RT++QERD+IEHEV AFIK C+E++DIL+NSIN+D+A+SKGWLG
Sbjct: 61  LEEFMLKHQKDYVDMYRTTDQERDNIEHEVAAFIKACQEQLDILKNSINEDDAHSKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
            + D SNADTIAHKHGVVLILSEKLHSVT+QFD++RAIRFQD I++A+PRRKL +    +
Sbjct: 121 PRTDDSNADTIAHKHGVVLILSEKLHSVTSQFDKLRAIRFQDIISKAVPRRKLNQVNKPR 180

Query: 181 YADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
            A+T   N +++RE D  + +P+   QQLLDDETRALQVELTSLLDAVQ+TETKMVEMSA
Sbjct: 181 SANTPEYNNTELREPDNFEHQPVRA-QQLLDDETRALQVELTSLLDAVQETETKMVEMSA 239

Query: 241 LNHLMSTHILHQAKQIEHLYEQ 262
           LNHLMSTH+L QA+QIEHLYEQ
Sbjct: 240 LNHLMSTHVLQQAQQIEHLYEQ 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518669|gb|AFK47396.1| unknown [Lotus japonicus]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/262 (73%), Positives = 225/262 (85%), Gaps = 3/262 (1%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           MA+ RDRTEDFKD VR +A SLGYDE+KLA+I+ASFIIHKP +RS F KAALKTLES+G 
Sbjct: 1   MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGE 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LEQF+L HRKDY ++HRT+EQERDSIE EV+AFIKTC+E+ID+L+NSIN+ E NSKGWLG
Sbjct: 61  LEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNVEENSKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
           +   ++NADTIAHKHGVVLILSE+LH VTAQFDQ+RA+RFQDAINRA PRRKL R T   
Sbjct: 121 IATAKANADTIAHKHGVVLILSERLHPVTAQFDQLRAVRFQDAINRATPRRKLSRVT--- 177

Query: 181 YADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSA 240
             D++     ++RE DE++ EPL VQQQLLDDETR LQVELT+LLD VQ+TETKMVEMSA
Sbjct: 178 RKDSTESRDMELREPDELRSEPLRVQQQLLDDETRVLQVELTNLLDTVQETETKMVEMSA 237

Query: 241 LNHLMSTHILHQAKQIEHLYEQ 262
           LNHLMSTH+L QA QIE+LYEQ
Sbjct: 238 LNHLMSTHVLQQAHQIEYLYEQ 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098503|ref|XP_002311197.1| predicted protein [Populus trichocarpa] gi|222851017|gb|EEE88564.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/264 (72%), Positives = 222/264 (84%), Gaps = 12/264 (4%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           MA+IRDRTEDFKD VRH A+SLGY+E++L AIMASFIIHKPR+RS FT+AALKTLES+GA
Sbjct: 1   MAKIRDRTEDFKDAVRHIAISLGYNETRLTAIMASFIIHKPRQRSPFTRAALKTLESIGA 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LEQF+L HRKDYV++HRT+EQERDSIE EVTAFIK CKE+IDIL+NSIND+ AN+KGWLG
Sbjct: 61  LEQFMLKHRKDYVDLHRTTEQERDSIEQEVTAFIKACKEQIDILKNSINDEAANTKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKR--ETV 178
           +K D S  DTIAHKHGVVLILSEKLHSVTA+FDQ+RAIRFQDAIN+ +PRRKL R   T 
Sbjct: 121 IKADTSTTDTIAHKHGVVLILSEKLHSVTARFDQLRAIRFQDAINKRIPRRKLNRAANTN 180

Query: 179 SKYADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEM 238
           +   D+S  N  +  E D+IQPE L VQQ          QVELTSLL+AVQ+TETKM+EM
Sbjct: 181 TTTVDSSKTNNLEFSEPDDIQPESLRVQQ----------QVELTSLLEAVQETETKMLEM 230

Query: 239 SALNHLMSTHILHQAKQIEHLYEQ 262
           SALNHLMSTH+L QA+QIE LYEQ
Sbjct: 231 SALNHLMSTHVLQQAQQIELLYEQ 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847548|ref|XP_002891655.1| hypothetical protein ARALYDRAFT_892151 [Arabidopsis lyrata subsp. lyrata] gi|297337497|gb|EFH67914.1| hypothetical protein ARALYDRAFT_892151 [Arabidopsis lyrata subsp. lyrata]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/266 (71%), Positives = 225/266 (84%), Gaps = 7/266 (2%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
           M+R RDRTEDFKD VR +AVS+GY+ESK+A+ MASFIIHKP+ERS FTKAA KTL+S+  
Sbjct: 1   MSRFRDRTEDFKDSVRKSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query: 61  LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
           LEQF+L HRKDYV++HRT+EQE+DSIE E+TAFIK CKE+IDIL+NSI ++EANSKGWLG
Sbjct: 61  LEQFMLKHRKDYVDLHRTTEQEKDSIEQEITAFIKACKEQIDILKNSIRNEEANSKGWLG 120

Query: 121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
           L  D  NADTIAHKHGVVLILSEKLHSVTAQFDQ+RA RFQD INRAMPRRK KR  + K
Sbjct: 121 LPADNFNADTIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKR--IIK 178

Query: 181 YAD---TSNPNKSDMRELDEIQPEPLTV-QQQLLDDETRALQVELTSLLDAVQQTETKMV 236
            A+   T+  N   ++  DEIQ +P  V QQQLLDDET+ALQVEL++LLD  +QTETKMV
Sbjct: 179 EANPIITTLANSESIKP-DEIQAQPRRVQQQQLLDDETQALQVELSNLLDGARQTETKMV 237

Query: 237 EMSALNHLMSTHILHQAKQIEHLYEQ 262
           EMSALNHLM+TH+L QA+QIE LY+Q
Sbjct: 238 EMSALNHLMATHVLQQAQQIELLYDQ 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2017632	310	SYP81 "syntaxin of plants 81"	0.992	0.838	0.716	1.3e-93
ZFIN|ZDB-GENE-050522-397	314	stx18 "syntaxin 18" [Danio rer	0.809	0.675	0.293	2.5e-19
UNIPROTKB|E1C1M8	333	STX18 "Uncharacterized protein	0.561	0.441	0.284	2.5e-16
UNIPROTKB|F1N1W6	335	STX18 "Uncharacterized protein	0.591	0.462	0.262	1.1e-14
UNIPROTKB|D6RF48	308	STX18 "Syntaxin-18" [Homo sapi	0.591	0.503	0.262	1.2e-14
UNIPROTKB|Q9P2W9	335	STX18 "Syntaxin-18" [Homo sapi	0.591	0.462	0.262	1.8e-14
MGI|MGI:1918366	334	Stx18 "syntaxin 18" [Mus muscu	0.587	0.461	0.241	1.7e-13
RGD|1310058	334	Stx18 "syntaxin 18" [Rattus no	0.587	0.461	0.230	2.9e-13
UNIPROTKB|Q68FW4	334	Stx18 "Syntaxin-18" [Rattus no	0.587	0.461	0.230	2.9e-13
UNIPROTKB|I3L7R7	243	LOC100621709 "Uncharacterized	0.770	0.831	0.258	3.9e-10

TAIR|locus:2017632 SYP81 "syntaxin of plants 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 190/265 (71%), Positives = 221/265 (83%)

Query:     1 MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGA 60
             M+R RDRTEDFKD VR++AVS+GY+ESK+A+ MASFIIHKP+ERS FTKAA KTL+S+  
Sbjct:     1 MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query:    61 LEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLG 120
             LE F+L HRKDYV++HRT+EQE+DSIE EV AFIK CKE+IDIL NSI ++EANSKGWLG
Sbjct:    61 LELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLG 120

Query:   121 LKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSK 180
             L  D  NAD+IAHKHGVVLILSEKLHSVTAQFDQ+RA RFQD INRAMPRRK KR  V K
Sbjct:   121 LPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKR--VIK 178

Query:   181 YADTSNPN--KSDMRELDEIQPEPLTVQQQ-LLDDETRALQVELTSLLDAVQQTETKMVE 237
              A   N     S+  E DEIQ +P  +QQQ LLDDET+ALQVEL++LLD  +QTETKMVE
Sbjct:   179 EATPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVE 238

Query:   238 MSALNHLMSTHILHQAKQIEHLYEQ 262
             MSALNHLM+TH+L QA+QIE LY+Q
Sbjct:   239 MSALNHLMATHVLQQAQQIEFLYDQ 263

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

ZFIN|ZDB-GENE-050522-397 stx18 "syntaxin 18" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 69/235 (29%), Positives = 122/235 (51%)

Query:    40 KPRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVT 91
             +PR+R SF+  A + + ++  L+ F+L HRKDYV        E+ R ++ ERD I+ +  
Sbjct:    41 RPRQRDSFSCKAREVISNISKLKDFLLQHRKDYVNAGSVMSSEVSRMTDSERDQIDQDAQ 100

Query:    92 AFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNA-DTI-AHKHGVVLILSE-KLHSV 148
              F++TC E I  L++ ++  + + +    +K  R+   D I ++  GV  + SE +   V
Sbjct:   101 IFMRTCAEAISQLRSEMDKKQVSMQ----VKDHRAAVLDLIDSYLKGVCKLYSEQRAVRV 156

Query:   149 TAQFDQMRAIRFQ-DAINRAMPRRKLKRETVSKYADTSNPNK-SDMRELDEIQPEPLTVQ 206
                 D+ R  R + + IN    +R+   E   K     N +   + R  D++ PE +   
Sbjct:   157 KRVVDKKRLSRLEPEQINTE--KRQSDGEENDKPVSDGNVDLWEENRVEDDLSPEEI--- 211

Query:   207 QQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261
              Q+ + E + L  E+ SLLD V+Q E K+VE+S L  + S  +L Q  +I+ +++
Sbjct:   212 -QMFEQENQRLVGEMNSLLDEVRQIEGKVVEISRLQEIFSEKVLQQETEIDSIHQ 265

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|E1C1M8 STX18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 48/169 (28%), Positives = 78/169 (46%)

Query:    42 RERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTAF 93
             R RS FT  A + + ++G L+ F+L HRKDY+        E  R ++ ERD I+ +   F
Sbjct:    42 RSRSDFTGRAREVISNIGKLKDFLLQHRKDYINAYSHIMSEYGRMTDTERDQIDQDAQIF 101

Query:    94 IKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFD 153
             ++TC + I  L+      EA+         D  +A    H+  V+  + + L  V   + 
Sbjct:   102 MRTCADAIHQLRT-----EAHK--------DVQSAQVKEHRTAVLDFIEDYLKRVCKLYS 148

Query:   154 QMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQPEP 202
             + RAIR +  I++     KL+ E         +P K     LDE + +P
Sbjct:   149 EQRAIRVKRVIDKKR-LSKLEPEQSHVTRSALSPEKFSQNSLDESEEKP 196

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1N1W6 STX18 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 48/183 (26%), Positives = 84/183 (45%)

Query:    41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
             PR +  F+  A + +  +G L  F+L HRK+Y+        E  R ++ ERD I+ +   
Sbjct:    43 PRPKDDFSSRAREVISHIGKLRDFLLEHRKNYINAYSHVMSEYGRMTDTERDQIDQDAQT 102

Query:    93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
             F++TC E I  L+   +      KG    +V         H+  V+    + L  V   +
Sbjct:   103 FMRTCSEAIQQLRTQAH------KGIHSQQVKE-------HRTAVLDFTEDYLKRVCKLY 149

Query:   153 DQMRAIRFQDAINRAM-----PRRKLK-RETVSKYADTSNPNK-SDMRELDEIQPEPLTV 205
              + RAIR +  +++       P    K RE++S    + +P+K S+ + + E  PE + V
Sbjct:   150 SEQRAIRVKRVVDKKRLSKLEPEPNTKTRESMSSEKVSQSPSKDSEEKPVPEEYPEKVPV 209

Query:   206 QQQ 208
             + Q
Sbjct:   210 EAQ 212

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|D6RF48 STX18 "Syntaxin-18" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 48/183 (26%), Positives = 84/183 (45%)

Query:    41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
             PR +  F+  A + +  +G L  F+L HRKDY+        E  R ++ ERD I+ +   
Sbjct:    43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQI 102

Query:    93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
             F++TC E I  L+   +  E +S+     +V         H+  V+  + + L  V   +
Sbjct:   103 FMRTCSEAIQQLRTEAHK-EIHSQ-----QVKE-------HRTAVLDFIEDYLKRVCKLY 149

Query:   153 DQMRAIRFQDAINRAM-----PRRKLK-RETVSKYADTSNPNK-SDMRELDEIQPEPLTV 205
              + RAIR +  +++       P    K RE+ S    + +P+K S+     E +PE +  
Sbjct:   150 SEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKVSQSPSKDSEENPATEERPEKILA 209

Query:   206 QQQ 208
             + Q
Sbjct:   210 ETQ 212

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9P2W9 STX18 "Syntaxin-18" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 48/183 (26%), Positives = 84/183 (45%)

Query:    41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
             PR +  F+  A + +  +G L  F+L HRKDY+        E  R ++ ERD I+ +   
Sbjct:    43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQI 102

Query:    93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
             F++TC E I  L+   +  E +S+     +V         H+  V+  + + L  V   +
Sbjct:   103 FMRTCSEAIQQLRTEAHK-EIHSQ-----QVKE-------HRTAVLDFIEDYLKRVCKLY 149

Query:   153 DQMRAIRFQDAINRAM-----PRRKLK-RETVSKYADTSNPNK-SDMRELDEIQPEPLTV 205
              + RAIR +  +++       P    K RE+ S    + +P+K S+     E +PE +  
Sbjct:   150 SEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKVSQSPSKDSEENPATEERPEKILA 209

Query:   206 QQQ 208
             + Q
Sbjct:   210 ETQ 212

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

MGI|MGI:1918366 Stx18 "syntaxin 18" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 44/182 (24%), Positives = 79/182 (43%)

Query:    41 PRERSSFTKAALKTLESVGALEQFILNHRKDYVEMH--------RTSEQERDSIEHEVTA 92
             PR +  F+  A + +  +G L  F+L HRK+Y+  +        R ++ ERD I+ +   
Sbjct:    43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSDYGRMTDTERDQIDQDAQI 102

Query:    93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
             FI+TC E I  L+   +  E +S+     +V         H+  V+  + + L  V   +
Sbjct:   103 FIRTCSEAIHQLRTEAHK-EIHSQ-----QVKE-------HRTAVLDFVDDYLKRVCKLY 149

Query:   153 DQMRAIRFQDAINRAM-------PRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTV 205
              + RAIR +  +++         P  K K  T  K    ++ +       +E+  +PL  
Sbjct:   150 SEQRAIRVKRVVDKKRLSKLEPEPHTKRKDSTSEKAPQNASQDSEGKPAAEELPEKPLAE 209

Query:   206 QQ 207
              Q
Sbjct:   210 SQ 211

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|1310058 Stx18 "syntaxin 18" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
 Identities = 42/182 (23%), Positives = 81/182 (44%)

Query:    41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
             PR +  F+  A + +  +G L  F+L HRK+Y+        E  R ++ ERD I+ +   
Sbjct:    43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSEYGRMTDTERDQIDQDAQI 102

Query:    93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
             F++TCK+ I  L+   +  E +S+     +V         H+  V+  + + L  V   +
Sbjct:   103 FMRTCKDAIQQLRTEAHK-EIHSQ-----QVKE-------HRTAVLDFVEDYLKRVCKLY 149

Query:   153 DQMRAIRFQDAINRAM-------PRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTV 205
              + RAIR +  +++         P  K K     K +  ++ +  +    +++  +PL  
Sbjct:   150 SEQRAIRVKRVVDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPAAEDLPEKPLAE 209

Query:   206 QQ 207
              Q
Sbjct:   210 SQ 211

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q68FW4 Stx18 "Syntaxin-18" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
 Identities = 42/182 (23%), Positives = 81/182 (44%)

Query:    41 PRERSSFTKAALKTLESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTA 92
             PR +  F+  A + +  +G L  F+L HRK+Y+        E  R ++ ERD I+ +   
Sbjct:    43 PRPKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSEYGRMTDTERDQIDQDAQI 102

Query:    93 FIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQF 152
             F++TCK+ I  L+   +  E +S+     +V         H+  V+  + + L  V   +
Sbjct:   103 FMRTCKDAIQQLRTEAHK-EIHSQ-----QVKE-------HRTAVLDFVEDYLKRVCKLY 149

Query:   153 DQMRAIRFQDAINRAM-------PRRKLKRETVSKYADTSNPNKSDMRELDEIQPEPLTV 205
              + RAIR +  +++         P  K K     K +  ++ +  +    +++  +PL  
Sbjct:   150 SEQRAIRVKRVVDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPAAEDLPEKPLAE 209

Query:   206 QQ 207
              Q
Sbjct:   210 SQ 211

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|I3L7R7 LOC100621709 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 61/236 (25%), Positives = 103/236 (43%)

Query:    55 LESVGALEQFILNHRKDYV--------EMHRTSEQERDSIEHEVTAFIKTCKEKIDILQN 106
             +  +G L  F+L HRKDY+        E  R ++ ERD I+ +   F++TC E I  L+ 
Sbjct:     1 ISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQTFMRTCSEAIQQLRA 60

Query:   107 SINDDEANSKGWLGLKVDRSNA-DTIAH--KHGVVLILSEKLHSVTAQFDQMRAIRFQDA 163
               + +  + +    +K  RS   D I    K    L   ++   V    D+ R  + +  
Sbjct:    61 QAHKEVPSQQ----VKEHRSAVLDFIEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLEPE 116

Query:   164 INRAMPRRKLKRETVSKYADTSNPNKSDMRELD------EIQPE-----------PLTVQ 206
              N    R  +  E VS+     +  K    E        E QPE            L+ +
Sbjct:   117 PN-TKARESMSPEKVSQSPSKDSEEKPATEEYSAEKIPAEAQPELGTWGDGKGEDELSPE 175

Query:   207 Q-QLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE 261
             + Q+ + E + L  E+ SL D V+Q E K+VE+S L  + +  +L Q  +I+ +++
Sbjct:   176 EVQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKVLQQEAEIDSIHQ 231

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P59277	SYP81_ARATH	No assigned EC number	0.6902	0.9809	0.8290	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00101883	hypothetical protein (312 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_X0143	SubName- Full=Putative uncharacterized protein; (301 aa)						•	•		0.835
	estExt_fgenesh4_pg.C_LG_XVIII1135	Ca2+ antiporter/cation exchanger (239 aa)						•	•		0.811
	eugene3.01580030	hypothetical protein (219 aa)						•			0.800
	estExt_fgenesh4_pm.C_LG_III0135	hypothetical protein (218 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam10496	86	pfam10496, Syntaxin-18_N, SNARE-complex protein Sy	5e-09

>gnl|CDD|220783 pfam10496, Syntaxin-18_N, SNARE-complex protein Syntaxin-18 N-terminus

 Score = 51.7 bits (124), Expect = 5e-09
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 5  RDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQF 64
           D T  FK  V+    +     +       S I +K + +  F K A +    + +L  F
Sbjct: 1  TDLTPLFKASVKTVRDASK---ALSVPEDRSNIPNKTKPKDEFLKEAYRINSHITSLLTF 57

Query: 65 ILNHRKDYV-------EMHRTSEQERDSI 86
          +   RK Y+          + ++ ERDSI
Sbjct: 58 LKEIRKAYLSTTTHLKSSSKMTDSERDSI 86

This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	100.0
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	99.91
PF10496	87	Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N	99.81
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	98.45
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	98.13
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	97.95
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	97.4
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	96.68
PF11416	29	Sed5p: Integral membrane protein Sed5p; InterPro:	95.89
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	95.88
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	95.76
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	95.73
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	94.85
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	92.92
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	90.9
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	87.47

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-34  Score=257.23  Aligned_cols=241  Identities=26%  Similarity=0.364  Sum_probs=190.5

Q ss_pred             cCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHh
Q 039000            5 RDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERD   84 (262)
Q Consensus         5 ~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD   84 (262)
                      +|+|+.|+++|++++...+.+.++-+.+ ++....++.++++|.+.|.+...+|++|..||.++|++|++. .|||.+||
T Consensus         1 ~d~t~~fk~sv~~i~~~~k~~~~~~~~~-~~~~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~d~-~mtd~ekd   78 (316)
T KOG3894|consen    1 SDITPIFKASVATVDDARKAQNGGDAHV-ERKQEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYKDF-RMTDAEKD   78 (316)
T ss_pred             CcchHHHHHHHHHHHHhccccccCCCCc-chhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHH
Confidence            6999999999999997654333321111 222456788999999999999999999999999999999988 99999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000           85 SIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI  164 (262)
Q Consensus        85 ~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~  164 (262)
                      .||.++..+|+.|.+.|..|.+++...              .+.+...|+.+|+..|..+++.+++.+......|+++.+
T Consensus        79 ~id~e~~~fi~~~t~~~~~l~~~~~~~--------------h~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV~~~l  144 (316)
T KOG3894|consen   79 EIDQECRLFIQQYTEKIEQLINYEMEE--------------HSLQLERFQDAVLRWLGILLKRNENTYSVQHKQRVENEL  144 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999998853              245778999999999999999999999999999999998


Q ss_pred             HHhcc-hhh-hhhh---cc--c----CC----CC-----CCCCC----CCCcccccCC--CCchhHHHHHHHHHHHHHHH
Q 039000          165 NRAMP-RRK-LKRE---TV--S----KY----AD-----TSNPN----KSDMRELDEI--QPEPLTVQQQLLDDETRALQ  218 (262)
Q Consensus       165 e~~~~-~~~-l~~~---~~--~----~~----~~-----~~~s~----~~~~~~~~~l--s~~~~q~Q~Q~~E~En~~ll  218 (262)
                      ..... .+. +...   +.  .    ..    +.     .++-+    +++....++.  .++++++|+|+||+||..|+
T Consensus       145 ~~~rl~vl~~~~~~~~~s~~~~~~~~~~~~~~~en~~~~~~~~~~s~~~~e~~~~~~~~~e~~~s~e~~Q~~E~En~~l~  224 (316)
T KOG3894|consen  145 SEKRLSVLACLDIKYVESKFQTIQNERLSKDNKENTLSERADDNRSLADSELGQDEEKHYEDPLSKEQVQLLETENQRLL  224 (316)
T ss_pred             HHHHHhhHhhcchhhccCchhhhhhhcchhhhHHHHHhhcchhhhcccchhhcCcccccCCccccHHHHHHHHHHHHHHH
Confidence            88742 111 1100   00  0    00    00     00000    1111111111  12344578999999999999


Q ss_pred             HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000          219 VELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE  261 (262)
Q Consensus       219 ~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~  261 (262)
                      +.+++++++|++||+.|+||++||+.|++||++|.++||.|||
T Consensus       225 ~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d  267 (316)
T KOG3894|consen  225 NELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHD  267 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.7e-22  Score=174.91  Aligned_cols=234  Identities=18%  Similarity=0.241  Sum_probs=159.0

Q ss_pred             cccCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHH-----HHhhhhhhccCC
Q 039000            3 RIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFI-----LNHRKDYVEMHR   77 (262)
Q Consensus         3 ~~~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL-----~~~R~~Yl~~~~   77 (262)
                      ++.|||.+|++||+..+.....+...   ...+...+...+.++|.+.|+.|++.|...-..|     ..+|+..++   
T Consensus         2 ~~rDRT~Ef~~~~~s~~~r~~~~~~~---~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~---   75 (311)
T KOG0812|consen    2 SFRDRTSEFQAAVKSLKKRNATRGVN---QADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFD---   75 (311)
T ss_pred             CcchhhHHHHHHHHHHHHHhhccccc---cCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---
Confidence            57899999999999988743211110   0001112334667899999999999999665554     235777666   


Q ss_pred             CChHHHhhhHHHHHHH---HHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000           78 TSEQERDSIEHEVTAF---IKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQ  154 (262)
Q Consensus        78 mtd~erD~ID~e~~~~---i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~  154 (262)
                         +.--+|++.+-.+   |..++..|..|+........ .          .+.+...|..+||..|..+|.++++.|++
T Consensus        76 ---Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn-~----------s~~~~~~Hs~~vV~~Lqs~la~is~~fk~  141 (311)
T KOG0812|consen   76 ---DRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGN-L----------SNKQLVQHSKNVVVSLQSKLANISKDFKD  141 (311)
T ss_pred             ---CcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhcc-c----------cchHhhhhhHHHHHHHHHHHHhhhhhHHH
Confidence               3333555554444   88899999999988743110 0          13567899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhhhhh-cccCC-C-CCCCC---CC-------------CCcccccCCCCchhHHHHHHHHHHHH
Q 039000          155 MRAIRFQDAINRAMPRRKLKRE-TVSKY-A-DTSNP---NK-------------SDMRELDEIQPEPLTVQQQLLDDETR  215 (262)
Q Consensus       155 ~~e~R~~r~~e~~~~~~~l~~~-~~~~~-~-~~~~s---~~-------------~~~~~~~~ls~~~~q~Q~Q~~E~En~  215 (262)
                      +.|+|.++.++.+.++-+.... +..++ | .++++   ++             .........+ ..-|+|++++++-  
T Consensus       142 VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~-~~qqqQm~ll~es--  218 (311)
T KOG0812|consen  142 VLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSS-NPQQQQMALLDES--  218 (311)
T ss_pred             HHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCC-CCHHHHHHHHHHH--
Confidence            9999999998888654332221 11111 1 01000   00             0001111111 1125677778666  


Q ss_pred             HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000          216 ALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE  261 (262)
Q Consensus       216 ~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~  261 (262)
                        .+|.+++.+.+++||++|.||++||++||.||++|+|.|.||=|
T Consensus       219 --~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~  262 (311)
T KOG0812|consen  219 --DEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDD  262 (311)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              34599999999999999999999999999999999999999843

>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18

Probab=99.81  E-value=4.8e-20  Score=138.93  Aligned_cols=80  Identities=28%  Similarity=0.348  Sum_probs=65.5

Q ss_pred             cCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhc-------cCC
Q 039000            5 RDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYVE-------MHR   77 (262)
Q Consensus         5 ~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~-------~~~   77 (262)
                      |||||+|++||++++...+..+.  ..........+..++|+|+|||++|++||++|+.||.+||++||+       .+.
T Consensus         1 ~DlT~lF~~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~~~~~~~~~~~   78 (87)
T PF10496_consen    1 TDLTPLFKACVKIIRTENKASGK--APSDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLSTSSHLSSSSS   78 (87)
T ss_pred             CCccHHHHHHHHHHHhhcccccc--ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence            79999999999999976532221  112223345566889999999999999999999999999999999       679


Q ss_pred             CChHHHhhh
Q 039000           78 TSEQERDSI   86 (262)
Q Consensus        78 mtd~erD~I   86 (262)
                      ||+.|||+|
T Consensus        79 ~t~~erD~i   87 (87)
T PF10496_consen   79 MTDAERDDI   87 (87)
T ss_pred             CCccccCCC
Confidence            999999987

Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=3.5e-05  Score=69.38  Aligned_cols=184  Identities=14%  Similarity=0.214  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH-------hhhhhhccCCCChHHHhhhHHHHH---HHHHHHHHHHHHHHHHhhhhcccc
Q 039000           46 SFTKAALKTLESVGALEQFILN-------HRKDYVEMHRTSEQERDSIEHEVT---AFIKTCKEKIDILQNSINDDEANS  115 (262)
Q Consensus        46 ~F~keA~~I~~~I~~L~~fL~~-------~R~~Yl~~~~mtd~erD~ID~e~~---~~i~~~~~~I~~L~~~~~~~~~~~  115 (262)
                      .|.--+-+|-..+...+.-+.+       |=.+=|++..   ++.++|+..+.   .+++.|...|..+...-+.     
T Consensus        58 ~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~---ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~-----  129 (305)
T KOG0809|consen   58 AWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKR---EDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ-----  129 (305)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----
Confidence            4555566666666555555433       2222233222   23445555444   4488888888877754431     


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcccc
Q 039000          116 KGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMREL  195 (262)
Q Consensus       116 ~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~  195 (262)
                                ..+...--+.++..+|-..|...+..|...|...+++...++..     +....    .+..+..+...+
T Consensus       130 ----------~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~-----~~~~e----~~~~~~~~~~dd  190 (305)
T KOG0809|consen  130 ----------LSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREEN-----SQEYE----DSLDNTVDLPDD  190 (305)
T ss_pred             ----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhc-----ccchh----hhccccccCcch
Confidence                      11222346678888999999999999999999999999666531     11000    000011111123


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000          196 DEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHL  259 (262)
Q Consensus       196 ~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i  259 (262)
                      +.+++.-.|+|++++.+.|++   +...+-++|.++-++|.|++.+|..|..+|-+|+..||||
T Consensus       191 ~d~~~~~~qe~ql~~~e~~~~---~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRI  251 (305)
T KOG0809|consen  191 EDFSDRTFQEQQLMLFENNEE---VVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRI  251 (305)
T ss_pred             hhhhhhhHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhe
Confidence            444444444433333344565   3667888999999999999999999999999999999997

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00069  Score=61.99  Aligned_cols=201  Identities=12%  Similarity=0.116  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-CCCC--hHHHhhhHHHHHHHHHH---HHHHHHHHHHHhhhhccccc
Q 039000           43 ERSSFTKAALKTLESVGALEQFILNHRKDYVEM-HRTS--EQERDSIEHEVTAFIKT---CKEKIDILQNSINDDEANSK  116 (262)
Q Consensus        43 ~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~~mt--d~erD~ID~e~~~~i~~---~~~~I~~L~~~~~~~~~~~~  116 (262)
                      .-+.|..++..|...|..|...+.+++...-.. +..-  ..-|.+++..+..+.+.   +..+|+.|+....... ..+
T Consensus        34 ~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~-~~~  112 (297)
T KOG0810|consen   34 NLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADE-TQN  112 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccC
Confidence            346899999999999999999998887776221 1222  23367777776666443   4444455544433211 000


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCccccc
Q 039000          117 GWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELD  196 (262)
Q Consensus       117 ~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~  196 (262)
                      +. |    .....-..+. +   .|+.+|.++-..|...+..--.+-+++=.++....+...+. .+     ..+...+.
T Consensus       113 ~~-~----~~~r~rrtq~-~---~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~-de-----~ie~~ie~  177 (297)
T KOG0810|consen  113 RS-S----AGLRTRRTQT-S---ALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETT-DE-----EIEEMIES  177 (297)
T ss_pred             CC-C----ccchhHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCC-hH-----HHHHHHHC
Confidence            00 0    0111111222 2   23366666666666666543333333322111111110000 00     00000000


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          197 EIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       197 ~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      .-+..-++-=++ --.+-...|++.+.+.++|..+|++|.|+..||.-++..|..|+++||+|-
T Consensus       178 g~~~~f~~~~i~-~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE  240 (297)
T KOG0810|consen  178 GGSEVFTQKAIQ-DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIE  240 (297)
T ss_pred             CChHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            000111111111 123457889999999999999999999999999999999999999999984

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0018  Score=58.44  Aligned_cols=194  Identities=11%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhh--hccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 039000           42 RERSSFTKAALKTLESVGALEQFILNHRKDY--VEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWL  119 (262)
Q Consensus        42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Y--l~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~  119 (262)
                      ..+..|..-+..|...|..+..-...+-+--  +.....|.+.||.+...    ...|++.++.+....+.-.. .    
T Consensus        14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~----~~~~~~~vkdt~~~lke~~~-~----   84 (269)
T KOG0811|consen   14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQE----RLNANQLVKDTSALLKEIDT-L----   84 (269)
T ss_pred             CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-h----
Confidence            3456888888888888875554433322111  23355667788888877    66666666666666553100 0    


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcccccCCC
Q 039000          120 GLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQ  199 (262)
Q Consensus       120 ~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~ls  199 (262)
                            .......+......-|..-...+-+.|..++..=..+.+ ...    ..+.+... +..    +.+.....+.+
T Consensus        85 ------~~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek-~~~----~a~~s~~s-~~~----~~~~~~~~~~~  148 (269)
T KOG0811|consen   85 ------RLESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK-IPM----VARGSQNS-QQL----DEESPRVDELS  148 (269)
T ss_pred             ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-ccc----cccccccc-hhh----hhhhhhhhhhh
Confidence                  011223556667777777777777777777655444442 000    00100000 000    00000001111


Q ss_pred             ---C---chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000          200 ---P---EPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE  261 (262)
Q Consensus       200 ---~---~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~  261 (262)
                         +   .+.++|.|..| +-...+...+.+..++++||+-|.|+.++|..|+.+|.+|++.||.|-+
T Consensus       149 ~~~~~~~~q~e~~~q~~e-~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~  215 (269)
T KOG0811|consen  149 NNGSQSQQQLEEQAQDNE-ILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEA  215 (269)
T ss_pred             ccchhhhhHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Confidence               1   11122233332 2334566788999999999999999999999999999999999999854

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.40  E-value=0.034  Score=50.01  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000          202 PLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHL  259 (262)
Q Consensus       202 ~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i  259 (262)
                      ...+|..+..+|-++=+...+.+..+|.+|.+.|.|+.++|..|..-|-+|++.+++|
T Consensus       171 ~~lqq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrI  228 (283)
T COG5325         171 QTLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRI  228 (283)
T ss_pred             hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            3445677777777776667899999999999999999999999999999999999998

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=96.68  E-value=0.021  Score=42.89  Aligned_cols=94  Identities=11%  Similarity=0.220  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhHHHHHHHHHHhhhhhhccC-CCC-h-HHHhhhHHHHHHH---HHHHHHHHHHHHHHhhhhccccccc
Q 039000           45 SSFTKAALKTLESVGALEQFILNHRKDYVEMH-RTS-E-QERDSIEHEVTAF---IKTCKEKIDILQNSINDDEANSKGW  118 (262)
Q Consensus        45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~-~mt-d-~erD~ID~e~~~~---i~~~~~~I~~L~~~~~~~~~~~~~~  118 (262)
                      +.|..++.+|...|..+..-|.+++.-|-..- ... | ..+++||..+..+   ++.|...|+.|+......       
T Consensus         3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~-------   75 (103)
T PF00804_consen    3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS-------   75 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence            48999999999999999999877666654431 111 1 4677777655544   888888888888764310       


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000          119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQM  155 (262)
Q Consensus       119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~  155 (262)
                                ....|..+++..+...+..+++.|.++
T Consensus        76 ----------~~~~~~~~~~ri~~nq~~~L~~kf~~~  102 (103)
T PF00804_consen   76 ----------EGEEPSSNEVRIRKNQVQALSKKFQEV  102 (103)
T ss_dssp             ----------HCTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence                      012356677777777777777777765

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery

Probab=95.89  E-value=0.0029  Score=37.45  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=16.8

Q ss_pred             CCcccCCcHHHHHHHHHHHhh
Q 039000            1 MARIRDRTEDFKDVVRHTAVS   21 (262)
Q Consensus         1 m~~~~D~T~~F~~~v~~~~~~   21 (262)
                      |.++.|||.+|++||.++.+.
T Consensus         1 m~~IqdRT~EFqqcV~s~~k~   21 (29)
T PF11416_consen    1 MTSIQDRTIEFQQCVSSYKKR   21 (29)
T ss_dssp             H-HHHB-HHHHHHHHHHHHHH
T ss_pred             CcchhHhhHHHHHHHHHHHHH
Confidence            456899999999999999875

This allows for participation in late fusion steps []. ; PDB: 1MQS_B.

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=95.88  E-value=0.03  Score=37.94  Aligned_cols=39  Identities=13%  Similarity=0.205  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000          223 SLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE  261 (262)
Q Consensus       223 ~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~  261 (262)
                      ++.+.+..++++|.++..|+..++..|.+|++.|++|-+
T Consensus         3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~   41 (60)
T cd00193           3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIED   41 (60)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999853

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=95.76  E-value=0.029  Score=49.38  Aligned_cols=49  Identities=14%  Similarity=0.293  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039000          214 TRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYEQ  262 (262)
Q Consensus       214 n~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~~  262 (262)
                      -.-.|.+.+.+...+.+||++|.||..|++-+++.|.+|.+++|.|-++
T Consensus       173 AktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~  221 (280)
T COG5074         173 AKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKN  221 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhh
Confidence            4566778888999999999999999999999999999999999998653

>smart00397 t_SNARE Helical region found in SNAREs

Probab=95.73  E-value=0.054  Score=37.24  Aligned_cols=42  Identities=17%  Similarity=0.191  Sum_probs=38.2

Q ss_pred             HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000          220 ELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE  261 (262)
Q Consensus       220 ~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~  261 (262)
                      .+..+...++.++.+|.++.+++..+...|.+|++.|++|-+
T Consensus         6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~   47 (66)
T smart00397        6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIED   47 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777889999999999999999999999999999999854

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=94.85  E-value=0.12  Score=35.79  Aligned_cols=37  Identities=8%  Similarity=0.228  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039000          225 LDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLYE  261 (262)
Q Consensus       225 l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~~  261 (262)
                      -+.+..|+++|.++.+++..+...|.+|++.|++|-+
T Consensus         3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~   39 (63)
T PF05739_consen    3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIED   39 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHH
Confidence            4678999999999999999999999999999999843

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>smart00503 SynN Syntaxin N-terminal domain

Probab=92.92  E-value=3.3  Score=31.70  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCCh---HHH---hhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000           45 SSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSE---QER---DSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGW  118 (262)
Q Consensus        45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd---~er---D~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~  118 (262)
                      +.|..+|..|..+|..+..-+..++.-+-....-++   .-|   +.+-.++....+.|...|+.|+........     
T Consensus         4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~-----   78 (117)
T smart00503        4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA-----   78 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-----
Confidence            489999999999999999888777665544422222   223   344455566688888888888765432100     


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000          119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRF  160 (262)
Q Consensus       119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~  160 (262)
                             .......-+..++.-|...+..+-..|...+..-.
T Consensus        79 -------~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~  113 (117)
T smart00503       79 -------SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR  113 (117)
T ss_pred             -------cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   01122346678888899999999999998887643

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=90.90  E-value=7.3  Score=31.33  Aligned_cols=112  Identities=14%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc---CCCChHHH---hhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000           45 SSFTKAALKTLESVGALEQFILNHRKDYVEM---HRTSEQER---DSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGW  118 (262)
Q Consensus        45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~---~~mtd~er---D~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~  118 (262)
                      ++|..++..|...|..+..-+..++.-+-..   ..=++.-|   +.+-.++...++.|...|+.|+....... ..   
T Consensus         2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~-~~---   77 (151)
T cd00179           2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNE-AL---   77 (151)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc---
Confidence            4799999999999999998876665554333   21122234   34445556667788888888876543210 00   


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039000          119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRA  167 (262)
Q Consensus       119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~  167 (262)
                             +.......+...+.-|...+..+-..|...+..--++.+++-
T Consensus        78 -------~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i  119 (151)
T cd00179          78 -------NGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERI  119 (151)
T ss_pred             -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   012233566677778899999999999988876555554443

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=87.47  E-value=10  Score=28.55  Aligned_cols=96  Identities=13%  Similarity=0.186  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Q 039000           45 SSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVD  124 (262)
Q Consensus        45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~  124 (262)
                      |+|.--+.+|...|..|..++...+.- ...+. +..+.+..-.+....++.+...|..|+..+..-.....+| |    
T Consensus         1 DPF~~v~~ev~~sl~~l~~~~~~~~~~-~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~----   73 (97)
T PF09177_consen    1 DPFFVVKDEVQSSLDRLESLYRRWQRL-RSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-N----   73 (97)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHH-TTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T----
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHh-cccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-C----
Confidence            789999999999999999998874333 33333 6677888888888889999999999999987521111122 3    


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHH
Q 039000          125 RSNADTIAHKHGVVLILSEKLHSV  148 (262)
Q Consensus       125 ~~~~~~~~Hr~~Vl~~L~~~L~~v  148 (262)
                       .......-|...|.-++..++.+
T Consensus        74 -l~~~Ei~~Rr~fv~~~~~~i~~~   96 (97)
T PF09177_consen   74 -LSEEEISRRRQFVSAIRNQIKQM   96 (97)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHhc
Confidence             13333444445555566666554

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 33/163 (20%)

Query: 67  NHRKDYVEMHRTSEQERDSIEHEVTAFIKT--CKEKIDILQNSINDDEANSKGWLGLKVD 124
           +H  D+ E      Q +D +     AF+    CK+  D+ ++ ++ +E      +  K  
Sbjct: 4   HHHMDF-ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDA 60

Query: 125 RSNADTIAHKHGVVLILSEKLHSVTAQF----DQ------MRAIRFQDAINRAMP----- 169
            S    +         L  K   +  +F     +      M  I+ +     +M      
Sbjct: 61  VSGTLRL------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYI 113

Query: 170 --RRKLKR--ETVSKYADTSNPNKSDMRE-LDEIQPEP-LTVQ 206
             R +L    +  +KY  +       +R+ L E++P   + + 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 45/288 (15%), Positives = 84/288 (29%), Gaps = 90/288 (31%)

Query: 1   MARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESV-- 58
            + I+ R    +  +R                    +  KP E        L  L +V  
Sbjct: 220 SSNIKLRIHSIQAELRR------------------LLKSKPYENC------LLVLLNVQN 255

Query: 59  -GALEQF-----ILNHRKDYVEMHRTSEQERDSIEHEVTAFI---KTCKEKIDILQNSIN 109
             A   F     IL      +    T+   R     +VT F+    T    +D    ++ 
Sbjct: 256 AKAWNAFNLSCKIL------L----TT---RFK---QVTDFLSAATTTHISLDHHSMTLT 299

Query: 110 DDEAN---SKGWLGLKVD--RSNADTIAHKHGVVL-ILSEKLHSVTAQFDQMRAIRFQDA 163
            DE      K +L  +         T    +   L I++E +    A +D  + +     
Sbjct: 300 PDEVKSLLLK-YLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKHVNCD-- 353

Query: 164 INRAMPRRKLKRETVSKYADTSNPNKSDMRELDE---IQPEPLTVQQQLL-----DDETR 215
                   KL    +    +   P   + R++ +   + P    +   LL     D    
Sbjct: 354 --------KLTT-IIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 216 ALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQ--AKQIEHLYE 261
            + V +  L          +VE       +S   ++     ++E+ Y 
Sbjct: 403 DVMVVVNKLHKY------SLVEKQPKESTISIPSIYLELKVKLENEYA 444

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.15
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	98.76
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	98.65
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	98.46
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	98.08
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	98.08
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	98.01
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	97.78
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	97.77
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	97.75
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	97.69
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	96.07
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	93.02
1mqs_B	50	SED5P, integral membrane protein SED5; SM-protein,	91.3
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	82.83

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.15  E-value=1.7e-10  Score=103.14  Aligned_cols=203  Identities=11%  Similarity=0.106  Sum_probs=129.2

Q ss_pred             CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-C--CCCh--HHHhhhHHHHH---HHHHHHHHHHHHHHHHhhhhcc
Q 039000           42 RERSSFTKAALKTLESVGALEQFILNHRKDYVEM-H--RTSE--QERDSIEHEVT---AFIKTCKEKIDILQNSINDDEA  113 (262)
Q Consensus        42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~--~mtd--~erD~ID~e~~---~~i~~~~~~I~~L~~~~~~~~~  113 (262)
                      ...+.|...|..|...|..+...|.+..+-+-.. .  ..++  ..+++|+..+.   ..++.|...|+.|+...+... 
T Consensus        41 ~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~-  119 (279)
T 2xhe_B           41 PFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ-  119 (279)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            4457899999999999999999998877765432 2  2223  34777776544   448889999999988765321 


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcc
Q 039000          114 NSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMR  193 (262)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~  193 (262)
                      ..++|-.    ....+...|+.+++..|...|..+...|+.++..+.++.+.+..+.....      ++... ....+..
T Consensus       120 ~~~~~~~----~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~------~~~~~-~ee~~~~  188 (279)
T 2xhe_B          120 QEGTFED----GTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVV------EPSLS-DDAIQKV  188 (279)
T ss_dssp             HHHCCST----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSS------CCCCS-STTHHHH
T ss_pred             hcccccC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCC-HHHHHHH
Confidence            1122310    01111347999999999999999999999999999888866543211000      00000 0000000


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          194 ELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       194 ~~~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      .+.. .+. ...|  +...+...-+++++.+..+|++||++|.||..||..|+..|.+|++.|++|-
T Consensus       189 ~e~g-~~~-~f~q--~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie  251 (279)
T 2xhe_B          189 IEHG-TEG-IFSG--MRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIE  251 (279)
T ss_dssp             HHHC---------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHH
T ss_pred             HhCC-chH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            0000 000 0001  1111223345679999999999999999999999999999999999999883

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=98.76  E-value=1.2e-06  Score=77.59  Aligned_cols=199  Identities=11%  Similarity=0.146  Sum_probs=125.8

Q ss_pred             CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhh---ccCCCChHHHhhhHHHHHH---HHHHHHHHHHHHHHHhhhhcccc
Q 039000           42 RERSSFTKAALKTLESVGALEQFILNHRKDYV---EMHRTSEQERDSIEHEVTA---FIKTCKEKIDILQNSINDDEANS  115 (262)
Q Consensus        42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl---~~~~mtd~erD~ID~e~~~---~i~~~~~~I~~L~~~~~~~~~~~  115 (262)
                      ..-+.|..++.+|...|..+...+.++++-+-   ......+.-|++||..+..   ..+.|..+|+.|+........ .
T Consensus        28 ~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~-~  106 (267)
T 1dn1_B           28 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-L  106 (267)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c
Confidence            44579999999999999999999877665543   2222224567777765544   477788888888776432100 0


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCC-CCC-CCCCCCCcc
Q 039000          116 KGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKY-ADT-SNPNKSDMR  193 (262)
Q Consensus       116 ~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~-~~~-~~s~~~~~~  193 (262)
                               ..+.....-+.+++..|..+|..+...|..++..-.++.+.+-.+.....+...+.. .+. ..++.....
T Consensus       107 ---------~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f  177 (267)
T 1dn1_B          107 ---------NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIF  177 (267)
T ss_dssp             ---------TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTT
T ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHH
Confidence                     011222345788999999999999999999988766666554322111111100000 000 000000001


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          194 ELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       194 ~~~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      ...-+. + .        .....-+.+.+.+..+|.+||++|.|+..||..|+..|.+|++.|++|-
T Consensus       178 ~q~~l~-~-~--------~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie  234 (267)
T 1dn1_B          178 ASGIIM-D-S--------SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE  234 (267)
T ss_dssp             TTTCCC-C-S--------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHH
T ss_pred             HHHHHH-h-h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            011010 0 0        1223456789999999999999999999999999999999999999883

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=98.65  E-value=1.5e-06  Score=73.08  Aligned_cols=176  Identities=14%  Similarity=0.131  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-CCCCh----HHHhhhHHH---HHHHHHHHHHHHHHHHHHhhhhcccccc
Q 039000           46 SFTKAALKTLESVGALEQFILNHRKDYVEM-HRTSE----QERDSIEHE---VTAFIKTCKEKIDILQNSINDDEANSKG  117 (262)
Q Consensus        46 ~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~~mtd----~erD~ID~e---~~~~i~~~~~~I~~L~~~~~~~~~~~~~  117 (262)
                      .|...+.+|...|..+..-+.+..+.+-.. +..++    ..|++|+..   +...++.|..+|+.|+.....       
T Consensus         6 ~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~-------   78 (196)
T 1fio_A            6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIH-------   78 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-------
Confidence            799999999999999999987776665442 22222    457777744   445578888888888765421       


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcccccC
Q 039000          118 WLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDE  197 (262)
Q Consensus       118 ~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~  197 (262)
                                   ..++.+++..|...|..+...|...+....++.+++-.+....... ..       + + +.. +..
T Consensus        79 -------------~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~-~~-------~-~-~e~-~~~  134 (196)
T 1fio_A           79 -------------DTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQP-EA-------T-E-DEV-EAA  134 (196)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TC-------C-H-HHH-HHH
T ss_pred             -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-------C-H-HHH-HHH
Confidence                         2478889999999999999999999999888887765432111110 00       0 0 000 000


Q ss_pred             CCC---chhHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039000          198 IQP---EPLTVQQQLLD----DETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQA  253 (262)
Q Consensus       198 ls~---~~~q~Q~Q~~E----~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~  253 (262)
                      +..   +..- +..++.    .+-...+++...+-.+|++||++|.|+..||..|+..|.+|+
T Consensus       135 ~~~~~~~~~f-~~~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG  196 (196)
T 1fio_A          135 ISDVGGQQIF-SQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             TSHHHHHHHH-HHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHcCCchhHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            100   0000 111111    012345678999999999999999999999999999988774

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=98.46  E-value=5.7e-07  Score=78.46  Aligned_cols=227  Identities=11%  Similarity=0.145  Sum_probs=127.2

Q ss_pred             CcccCCcHHHHHHHHHHHhhcCCChhHHHHHhhhhhcCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhh---ccCCC
Q 039000            2 ARIRDRTEDFKDVVRHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESVGALEQFILNHRKDYV---EMHRT   78 (262)
Q Consensus         2 ~~~~D~T~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl---~~~~m   78 (262)
                      .+|.|||.+|+.+...........           .......-++|..++.+|...|..+...+.++...+-   .....
T Consensus        11 g~mkDr~~el~~~~~~~~~~~~~~-----------~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~   79 (279)
T 3c98_B           11 GSMKDRTQELRTAKDSDDDDDVTV-----------TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP   79 (279)
T ss_dssp             ---CCCCTTTC----------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             CchHHHHHHHHHhhhcccccchhh-----------hcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            358899999998876544321100           0112344579999999999999999999877655432   22333


Q ss_pred             ChHHHhhhHH---HHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000           79 SEQERDSIEH---EVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQM  155 (262)
Q Consensus        79 td~erD~ID~---e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~  155 (262)
                      ...-+..++.   ++......|...+..++........ .         ........++..++..|...+..+...|.+.
T Consensus        80 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~-i---------~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~  149 (279)
T 3c98_B           80 DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-L---------NRSSADLRIRKTQHSTLSRKFVEVMSEYNAT  149 (279)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---------TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h---------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444443   4444567777777777665543110 0         1123456788889999999999999999888


Q ss_pred             HHHHHHHHHHHhcchhhhhhhcccC--C-CCCCCCCCCCcccccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039000          156 RAIRFQDAINRAMPRRKLKRETVSK--Y-ADTSNPNKSDMRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTE  232 (262)
Q Consensus       156 ~e~R~~r~~e~~~~~~~l~~~~~~~--~-~~~~~s~~~~~~~~~~ls~~~~q~Q~Q~~E~En~~ll~~l~~~l~~V~~iE  232 (262)
                      +........+.-+........+...  . .................+...           ....+.+.+...+.+..|+
T Consensus       150 ~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~i~~I~  218 (279)
T 3c98_B          150 QSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSI-----------SKQALSEIETRHSEIIKLE  218 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTTTSCSCSSS-----------TTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence            7766655544432111111110000  0 000000000000000001111           1223345778888999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          233 TKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       233 ~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      .+|.+|..++..|+..|.+|++.|++|.
T Consensus       219 ~~i~ei~~~~~~ia~~v~eQ~~~~~~I~  246 (279)
T 3c98_B          219 NSIRELHDMFMDMAMLVESQGEMIDRIE  246 (279)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998874

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=98.08  E-value=9.6e-06  Score=57.15  Aligned_cols=43  Identities=14%  Similarity=0.171  Sum_probs=40.5

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      |++++.+.++|++||++|.||..||..|+..|.+|++.|++|-
T Consensus         4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie   46 (68)
T 1n7s_B            4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE   46 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            5678899999999999999999999999999999999999984

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.08  E-value=9.9e-06  Score=57.26  Aligned_cols=43  Identities=16%  Similarity=0.259  Sum_probs=40.4

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      |++++.+.+++++||++|.|+..||..|+..|.+|++.||+|-
T Consensus         2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie   44 (69)
T 3b5n_B            2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVID   44 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4678899999999999999999999999999999999999984

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=98.01  E-value=1.5e-05  Score=57.51  Aligned_cols=43  Identities=14%  Similarity=0.171  Sum_probs=40.3

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      |++.+.+.++|++||++|.|+..||..|+..|.+|++.||+|-
T Consensus         2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie   44 (77)
T 1jth_B            2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE   44 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4678889999999999999999999999999999999999983

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=97.78  E-value=6.4e-05  Score=54.96  Aligned_cols=43  Identities=14%  Similarity=0.171  Sum_probs=39.7

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          218 QVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       218 l~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      +.+...+..++.+||++|.|+..||..|+..|.+|++.|++|-
T Consensus        13 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie   55 (83)
T 1sfc_B           13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE   55 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4568888888999999999999999999999999999999983

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=97.77  E-value=4.4e-05  Score=53.27  Aligned_cols=41  Identities=12%  Similarity=0.242  Sum_probs=36.8

Q ss_pred             HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          220 ELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       220 ~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      ++..+-.++++||++|.|+..||..|+..|.+|++.|++|=
T Consensus         3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie   43 (65)
T 1gl2_B            3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIE   43 (65)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999983

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=97.75  E-value=6.5e-05  Score=57.76  Aligned_cols=46  Identities=13%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          215 RALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       215 ~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      ...|++.+++.+++++||++|.|+..||..|+.+|.+|++.||+|-
T Consensus        10 ~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie   55 (109)
T 3hd7_B           10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE   55 (109)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4567889999999999999999999999999999999999999984

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=97.69  E-value=7.1e-05  Score=53.05  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039000          223 SLLDAVQQTETKMVEMSALNHLMSTHILHQAKQIEHLY  260 (262)
Q Consensus       223 ~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q~e~I~~i~  260 (262)
                      .+.++|++||++|.||..||..|+..|.+|++.||+|-
T Consensus         3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie   40 (71)
T 2nps_B            3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIE   40 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            46788999999999999999999999999999999984

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=96.07  E-value=0.29  Score=37.50  Aligned_cols=108  Identities=10%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHHHhHHHHHHHHHHhhhhh---hccCCCChHHHhhhHHH---HHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000           45 SSFTKAALKTLESVGALEQFILNHRKDY---VEMHRTSEQERDSIEHE---VTAFIKTCKEKIDILQNSINDDEANSKGW  118 (262)
Q Consensus        45 d~F~keA~~I~~~I~~L~~fL~~~R~~Y---l~~~~mtd~erD~ID~e---~~~~i~~~~~~I~~L~~~~~~~~~~~~~~  118 (262)
                      +.|..++.+|-..|..|...+.+++..+   |+...-.+..++++|..   +......|..+|+.|+........ .   
T Consensus         8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~-~---   83 (127)
T 1ez3_A            8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG-L---   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---
Confidence            4799999999999999999987655544   44333344556666654   445577788888888766542110 0   


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000          119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQD  162 (262)
Q Consensus       119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r  162 (262)
                            ........-|.+++..|..+|..+-..|..++..--++
T Consensus        84 ------~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~  121 (127)
T 1ez3_A           84 ------NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRER  121 (127)
T ss_dssp             ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  01122335678899999999999999999877664433

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=93.02  E-value=2  Score=34.95  Aligned_cols=104  Identities=11%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHhHHHHHHHHHHhhhhh---hccCCCChHHHhhhH---HHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 039000           45 SSFTKAALKTLESVGALEQFILNHRKDY---VEMHRTSEQERDSIE---HEVTAFIKTCKEKIDILQNSINDDEANSKGW  118 (262)
Q Consensus        45 d~F~keA~~I~~~I~~L~~fL~~~R~~Y---l~~~~mtd~erD~ID---~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~  118 (262)
                      +.|..++..|-..|..+...+.++++.+   |....-...-|++++   .++....+.|..+|+.|+..........   
T Consensus        39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~---  115 (180)
T 1s94_A           39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN---  115 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---
Confidence            4799999999999999999987765554   332211122244444   5556668888888888887654311000   


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000          119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAI  158 (262)
Q Consensus       119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~  158 (262)
                             .......-|.+++..|..+|..+...|...+..
T Consensus       116 -------~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~  148 (180)
T 1s94_A          116 -------KSSADLRIRKTQYSTISRKFVEVMSDYNTTQID  148 (180)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111123456788889999999999999887654

>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}

Probab=91.30  E-value=0.056  Score=35.36  Aligned_cols=20  Identities=30%  Similarity=0.401  Sum_probs=17.6

Q ss_pred             cccCCcHHHHHHHHHHHhhc
Q 039000            3 RIRDRTEDFKDVVRHTAVSL   22 (262)
Q Consensus         3 ~~~D~T~~F~~~v~~~~~~~   22 (262)
                      ++.|||++|+.+|..+++..
T Consensus         7 SiqDRT~EF~siv~~lqkr~   26 (50)
T 1mqs_B            7 NIKDRTSEFQQSVLSYKKRN   26 (50)
T ss_dssp             HHHBCHHHHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHHhcc
Confidence            36899999999999999865

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=82.83  E-value=13  Score=28.78  Aligned_cols=101  Identities=14%  Similarity=0.121  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHHhHHHHHHHHHHhhhhhhccCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 039000           42 RERSSFTKAALKTLESVGALEQFILNHRKDYVEMHRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGL  121 (262)
Q Consensus        42 ~~~d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~  121 (262)
                      ...|+|..-+.+|.+.|..|..++.....-.-..+..+-.|.+..-.+....++.+..-|..|+..+..-. ..+.+||+
T Consensus        24 s~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE-~np~kF~l  102 (130)
T 4dnd_A           24 SLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE-ANPGKFKL  102 (130)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHCC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHhcCC
Confidence            45799999999999999999999876322111112223356666677777778888899999998887411 22333342


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHH
Q 039000          122 KVDRSNADTIAHKHGVVLILSEKLHSV  148 (262)
Q Consensus       122 ~~~~~~~~~~~Hr~~Vl~~L~~~L~~v  148 (262)
                           ......-|...|.-++..+..+
T Consensus       103 -----~~~Ei~~Rr~fV~~~r~~I~~m  124 (130)
T 4dnd_A          103 -----PAGDLQERKVFVERMREAVQEM  124 (130)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHH
Confidence                 2333334445555566665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.67
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	91.9

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=2.1e-07  Score=75.17  Aligned_cols=183  Identities=11%  Similarity=0.121  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhhhhhcc-CCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Q 039000           46 SFTKAALKTLESVGALEQFILNHRKDYVEM-HRTSEQERDSIEHEVTAFIKTCKEKIDILQNSINDDEANSKGWLGLKVD  124 (262)
Q Consensus        46 ~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~-~~mtd~erD~ID~e~~~~i~~~~~~I~~L~~~~~~~~~~~~~~~~~~~~  124 (262)
                      +|..++.+|...|..+..-+..+..-+-.. ...+..+.+++...+..+...+...++.++...+.-..           
T Consensus         6 ~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~-----------   74 (196)
T d1fioa_           6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQR-----------   74 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------
Confidence            799999999999999988876655322111 23456666777777777766666666666665543110           


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCCCCCcccccCCC---Cc
Q 039000          125 RSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKYADTSNPNKSDMRELDEIQ---PE  201 (262)
Q Consensus       125 ~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~R~~r~~e~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~ls---~~  201 (262)
                        ......++.+++..|...|..+...|..++....++.+....+.......... +          ...+....   ..
T Consensus        75 --~~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~-~----------~~~~~~~~~~~~~  141 (196)
T d1fioa_          75 --DGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEAT-E----------DEVEAAISDVGGQ  141 (196)
T ss_dssp             --HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC-H----------HHHHHHTSHHHHH
T ss_pred             --cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc-c----------hhhhHhhccccch
Confidence              11123567888999999999999999999998887776554321111110000 0          00000000   00


Q ss_pred             hhHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039000          202 PLTVQ---QQLLDDETRALQVELTSLLDAVQQTETKMVEMSALNHLMSTHILHQ  252 (262)
Q Consensus       202 ~~q~Q---~Q~~E~En~~ll~~l~~~l~~V~~iE~si~EIs~Lq~~la~~l~~Q  252 (262)
                      ....+   ......+-...+.++..+-.+|++||++|.|+..||..|++.|.+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ  195 (196)
T d1fioa_         142 QIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ  195 (196)
T ss_dssp             HHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence            00000   0011123345567789999999999999999999999999998876

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.90  E-value=1.5  Score=31.47  Aligned_cols=104  Identities=11%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHhHHHHHHHHHHhhhhhhcc---CCCChHHHhhhHHHHHHH---HHHHHHHHHHHHHHhhhhccccccc
Q 039000           45 SSFTKAALKTLESVGALEQFILNHRKDYVEM---HRTSEQERDSIEHEVTAF---IKTCKEKIDILQNSINDDEANSKGW  118 (262)
Q Consensus        45 d~F~keA~~I~~~I~~L~~fL~~~R~~Yl~~---~~mtd~erD~ID~e~~~~---i~~~~~~I~~L~~~~~~~~~~~~~~  118 (262)
                      +.|..++..|-..|..+..-+..++..+-..   ...-..-+++++..+..+   -..|..+|+.|+..........   
T Consensus         6 ~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~---   82 (124)
T d1ez3a_           6 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN---   82 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---
Confidence            3799999999999999999987776655322   222234466666555544   5556666776665543211100   


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039000          119 LGLKVDRSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAI  158 (262)
Q Consensus       119 ~~~~~~~~~~~~~~Hr~~Vl~~L~~~L~~vs~~f~~~~e~  158 (262)
                             ......--|.+.+..|..+|..+=..|.+++..
T Consensus        83 -------~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~  115 (124)
T d1ez3a_          83 -------RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD  115 (124)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   122334567888899999999999999887764