Citrus Sinensis ID: 039013

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGGPDPQHH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHccccccHHccccccHHHHHHHHcccHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLtklkhyerlsstihresdrvspggpdpqhh
Flexible Loop (DISEMBL)
MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYErlsstihresdrvspggpdpqhh
Low Complexity Region (SEG)
MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGGPDPQHH
Disordered region (IsUnstruct)
*LMLFFIVFSLLFMSFQARILHDEQ******SNIDSQLLLRELGFDLTKLKHYE***********************
Disordered Region (DISOPRED)
MLMLFFIVFSLLFMSFQARIL****************LLLRELGFDLTKLKH*************************
Disordered Region (DISEMBL)
MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTI*****************
Disordered Region (DISPRO)
MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKH*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGGPDPQHH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q8S8N3	81	CLAVATA3/ESR (CLE)-relate	yes	no	0.935	0.888	0.460	6e-11
Q8S8N2	81	CLAVATA3/ESR (CLE)-relate	no	no	0.831	0.790	0.571	8e-11
Q8S8N1	86	CLAVATA3/ESR (CLE)-relate	no	no	0.922	0.825	0.394	4e-08

>sp|Q8S8N3|CLE6_ARATH CLAVATA3/ESR (CLE)-related protein 6 OS=Arabidopsis thaliana GN=CLE6 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 4/76 (5%)

Query: 2  LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIH 61
          L++  I++S   +S QARIL   +       ++DSQ+LLRELG DL+K K  +     + 
Sbjct: 10 LIILLIIYSTPILSSQARILRTYRPTT--MGDMDSQVLLRELGIDLSKFKGQDERRFLV- 66

Query: 62 RESDRVSPGGPDPQHH 77
           +S+RVSPGGPDPQHH
Sbjct: 67 -DSERVSPGGPDPQHH 81

Extracellular signal peptide that regulates cell fate.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8N2|CLE5_ARATH CLAVATA3/ESR (CLE)-related protein 5 OS=Arabidopsis thaliana GN=CLE5 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 9  FSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLK-HYERLSSTIHRESDRV 67
          FSL  +S QARIL   +  +    N+DSQ+LL ELGFDL+K K H ER        SDRV
Sbjct: 17 FSLQTLSSQARILRSYRAVS--MGNMDSQVLLHELGFDLSKFKGHNER---RFLVSSDRV 71

Query: 68 SPGGPDPQHH 77
          SPGGPDPQHH
Sbjct: 72 SPGGPDPQHH 81

Extracellular signal peptide that regulates cell fate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8N1|CLE7_ARATH CLAVATA3/ESR (CLE)-related protein 7 OS=Arabidopsis thaliana GN=CLE7 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 5/76 (6%)

Query: 2  LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIH 61
          L+LF ++  LL +  + RIL    + N+   + +S  LL+ LG+++++LK   R   ++ 
Sbjct: 6  LLLFVMLTFLLVIEMEGRIL----RVNSKTKDGESNDLLKRLGYNVSELKRIGR-ELSVQ 60

Query: 62 RESDRVSPGGPDPQHH 77
           E DR SPGGPDPQHH
Sbjct: 61 NEVDRFSPGGPDPQHH 76

Extracellular signal peptide that regulates cell fate.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
359485428	921	PREDICTED: pentatricopeptide repeat-cont	0.883	0.073	0.545	4e-15
255568315	88	CLE7, putative [Ricinus communis] gi|223	0.948	0.829	0.55	6e-14
147853495	954	hypothetical protein VITISV_021279 [Viti	0.883	0.071	0.532	2e-13
224146491	85	predicted protein [Populus trichocarpa]	0.948	0.858	0.538	3e-13
359485272	89	PREDICTED: CLAVATA3/ESR (CLE)-related pr	0.948	0.820	0.467	2e-11
297822843	81	hypothetical protein ARALYDRAFT_482035 [	0.922	0.876	0.545	3e-11
147770952	85	hypothetical protein VITISV_019983 [Viti	0.909	0.823	0.486	5e-11
20197330	114	CLE7 [Arabidopsis thaliana]	0.831	0.561	0.571	2e-09
18402551	81	protein CLAVATA3/ESR-related 6 [Arabidop	0.935	0.888	0.460	2e-09
42570343	81	protein CLAVATA3/ESR-related 5 [Arabidop	0.831	0.790	0.571	3e-09

>gi|359485428|ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 9/77 (11%)

Query: 1   MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTI 60
           +L+LF +VFS  FMS QARI         M+  IDSQ+LLR+LG+D +KL H +R+ ST+
Sbjct: 847 VLILFLVVFSTFFMSLQARI--------RMRMRIDSQILLRDLGYDESKLHHLQRM-STL 897

Query: 61  HRESDRVSPGGPDPQHH 77
              ++RVSPGGPDPQHH
Sbjct: 898 DAGANRVSPGGPDPQHH 914

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568315|ref|XP_002525132.1| CLE7, putative [Ricinus communis] gi|223535591|gb|EEF37259.1| CLE7, putative [Ricinus communis]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 7/80 (8%)

Query: 1  MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNID---SQLLLRELGFDLTKLKHYERLS 57
          +L+   I+FS+LF+  QARIL  +Q   AMQ + D   S  LL ELGFDL+KLK Y++LS
Sbjct: 12 VLLFLIIMFSILFLGCQARILKVQQ---AMQKDRDASSSSFLLHELGFDLSKLKRYQKLS 68

Query: 58 STIHRESDRVSPGGPDPQHH 77
          + +H   DRVSPGGPDP HH
Sbjct: 69 A-LHASGDRVSPGGPDPHHH 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853495|emb|CAN82291.1| hypothetical protein VITISV_021279 [Vitis vinifera]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 9/77 (11%)

Query: 1   MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTI 60
           +L+LF +VFS  FMS Q RI         M   IDSQ+LLR+LG+D +KL H +R+ ST+
Sbjct: 880 VLILFLVVFSTFFMSLQXRI--------RMXMRIDSQILLRDLGYDESKLXHLQRM-STL 930

Query: 61  HRESDRVSPGGPDPQHH 77
              ++RVSPGGPDPQHH
Sbjct: 931 DAGANRVSPGGPDPQHH 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146491|ref|XP_002326025.1| predicted protein [Populus trichocarpa] gi|222862900|gb|EEF00407.1| predicted protein [Populus trichocarpa]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 5/78 (6%)

Query: 1  MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNID-SQLLLRELGFDLTKLKHYERLSST 59
          M++L  ++FS +F++ +ARIL   Q   A+Q N + S+ LL ELGFDL+KL+HY RLS T
Sbjct: 12 MILLLMVLFSAIFLTSEARILKGGQ---ALQGNANNSRHLLLELGFDLSKLEHYRRLS-T 67

Query: 60 IHRESDRVSPGGPDPQHH 77
          +   SDR+SPGGPDP HH
Sbjct: 68 LSVASDRLSPGGPDPHHH 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485272|ref|XP_003633252.1| PREDICTED: CLAVATA3/ESR (CLE)-related protein 6-like [Vitis vinifera]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 4/77 (5%)

Query: 1  MLMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTI 60
          + +LF +V+ +LF     RILH       M+ NI+S+L+L ELG+DL KL    ++ +T 
Sbjct: 9  VWILFLVVYPVLFKGSHGRILHGPP---VMKKNINSRLILLELGYDLAKLNSI-KVGTTG 64

Query: 61 HRESDRVSPGGPDPQHH 77
             SDRVSPGGPDPQH+
Sbjct: 65 GVGSDRVSPGGPDPQHN 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822843|ref|XP_002879304.1| hypothetical protein ARALYDRAFT_482035 [Arabidopsis lyrata subsp. lyrata] gi|297325143|gb|EFH55563.1| hypothetical protein ARALYDRAFT_482035 [Arabidopsis lyrata subsp. lyrata]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 51/77 (66%), Gaps = 6/77 (7%)

Query: 2  LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLK-HYERLSSTI 60
          L++  I+FS   +  QARIL   +  +   SN+DSQ+LLRELGFDL+K K H ER     
Sbjct: 10 LIILLIIFSSQTLRSQARILRSYRVVS--MSNVDSQVLLRELGFDLSKFKGHNER---RF 64

Query: 61 HRESDRVSPGGPDPQHH 77
             SDRVSPGGPDPQHH
Sbjct: 65 LVSSDRVSPGGPDPQHH 81

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770952|emb|CAN62990.1| hypothetical protein VITISV_019983 [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 4/74 (5%)

Query: 4  LFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIHRE 63
          LF +V S+L  S ++R+ H    A   Q  IDS L+LRE+GFD  K+++Y R  S +  E
Sbjct: 9  LFIVVLSMLGPSLESRLYHVPSMA---QKGIDSHLILREMGFDTPKMEYY-RKRSLLDAE 64

Query: 64 SDRVSPGGPDPQHH 77
          + RVSPGGPDP+HH
Sbjct: 65 TTRVSPGGPDPEHH 78

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20197330|gb|AAM15027.1|AC005311_15 CLE7 [Arabidopsis thaliana]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 9   FSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLK-HYERLSSTIHRESDRV 67
           FSL  +S QARIL   +  +    N+DSQ+LL ELGFDL+K K H ER        SDRV
Sbjct: 50  FSLQTLSSQARILRSYRAVS--MGNMDSQVLLHELGFDLSKFKGHNER---RFLVSSDRV 104

Query: 68  SPGGPDPQHH 77
           SPGGPDPQHH
Sbjct: 105 SPGGPDPQHH 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402551|ref|NP_565713.1| protein CLAVATA3/ESR-related 6 [Arabidopsis thaliana] gi|75160486|sp|Q8S8N3.1|CLE6_ARATH RecName: Full=CLAVATA3/ESR (CLE)-related protein 6; Contains: RecName: Full=CLE6p; Flags: Precursor gi|20197326|gb|AAM15025.1| CLE4 [Arabidopsis thaliana] gi|21618196|gb|AAM67246.1| unknown [Arabidopsis thaliana] gi|330253397|gb|AEC08491.1| protein CLAVATA3/ESR-related 6 [Arabidopsis thaliana]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 4/76 (5%)

Query: 2  LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIH 61
          L++  I++S   +S QARIL   +       ++DSQ+LLRELG DL+K K  +     + 
Sbjct: 10 LIILLIIYSTPILSSQARILRTYRPTT--MGDMDSQVLLRELGIDLSKFKGQDERRFLV- 66

Query: 62 RESDRVSPGGPDPQHH 77
           +S+RVSPGGPDPQHH
Sbjct: 67 -DSERVSPGGPDPQHH 81

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570343|ref|NP_850159.2| protein CLAVATA3/ESR-related 5 [Arabidopsis thaliana] gi|313471280|sp|Q8S8N2.2|CLE5_ARATH RecName: Full=CLAVATA3/ESR (CLE)-related protein 5; Contains: RecName: Full=CLE5p; Flags: Precursor gi|330253396|gb|AEC08490.1| protein CLAVATA3/ESR-related 5 [Arabidopsis thaliana]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 9  FSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLK-HYERLSSTIHRESDRV 67
          FSL  +S QARIL   +  +    N+DSQ+LL ELGFDL+K K H ER        SDRV
Sbjct: 17 FSLQTLSSQARILRSYRAVS--MGNMDSQVLLHELGFDLSKFKGHNER---RFLVSSDRV 71

Query: 68 SPGGPDPQHH 77
          SPGGPDPQHH
Sbjct: 72 SPGGPDPQHH 81

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
TAIR|locus:504955982	81	CLE5 "AT2G31083" [Arabidopsis	0.922	0.876	0.571	3e-14
TAIR|locus:505006281	81	CLE6 "AT2G31085" [Arabidopsis	0.935	0.888	0.460	5e-12
TAIR|locus:504955981	86	CLE7 "AT2G31082" [Arabidopsis	0.922	0.825	0.407	4.7e-09

TAIR|locus:504955982 CLE5 "AT2G31083" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 44/77 (57%), Positives = 53/77 (68%)

Query:     2 LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLK-HYERLSSTI 60
             L++  I+FSL  +S QARIL    +A +M  N+DSQ+LL ELGFDL+K K H ER     
Sbjct:    10 LIILLIIFSLQTLSSQARILRS-YRAVSM-GNMDSQVLLHELGFDLSKFKGHNERRFLV- 66

Query:    61 HRESDRVSPGGPDPQHH 77
                SDRVSPGGPDPQHH
Sbjct:    67 --SSDRVSPGGPDPQHH 81

GO:0005102 "receptor binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0048046 "apoplast" evidence=RCA

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

TAIR|locus:505006281 CLE6 "AT2G31085" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 35/76 (46%), Positives = 49/76 (64%)

Query:     2 LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIH 61
             L++  I++S   +S QARIL   +       ++DSQ+LLRELG DL+K K  +     + 
Sbjct:    10 LIILLIIYSTPILSSQARILRTYRPTT--MGDMDSQVLLRELGIDLSKFKGQDERRFLV- 66

Query:    62 RESDRVSPGGPDPQHH 77
              +S+RVSPGGPDPQHH
Sbjct:    67 -DSERVSPGGPDPQHH 81

GO:0005102 "receptor binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0048046 "apoplast" evidence=RCA

TAIR|locus:504955981 CLE7 "AT2G31082" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 31/76 (40%), Positives = 47/76 (61%)

Query:     2 LMLFFIVFSLLFMSFQARILHDEQQANAMQSNIDSQLLLRELGFDLTKLKHYERLSSTIH 61
             L+LF ++  LL +  + RIL    + N+   + +S  LL+ LG+++++LK   R  S + 
Sbjct:     6 LLLFVMLTFLLVIEMEGRIL----RVNSKTKDGESNDLLKRLGYNVSELKRIGRELS-VQ 60

Query:    62 RESDRVSPGGPDPQHH 77
              E DR SPGGPDPQHH
Sbjct:    61 NEVDRFSPGGPDPQHH 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       77        77   0.00091  102 3  11 22  0.45    28
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  480 (51 KB)
  Total size of DFA:  86 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.46u 0.17s 10.63t   Elapsed:  00:00:01
  Total cpu time:  10.46u 0.17s 10.63t   Elapsed:  00:00:01
  Start:  Fri May 10 04:57:05 2013   End:  Fri May 10 04:57:06 2013

GO:0005102 "receptor binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0048046 "apoplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8N3	CLE6_ARATH	No assigned EC number	0.4605	0.9350	0.8888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00190826 hypothetical protein (85 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
PF06806	72	DUF1233: Putative excisionase (DUF1233); InterPro:	83.34

>PF06806 DUF1233: Putative excisionase (DUF1233); InterPro: IPR009634 This family consists of several putative phage and prophage excisionase proteins of around 80 residues in length

Probab=83.34  E-value=1  Score=28.54  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=24.3

Q ss_pred             HHHHHHHhhhhhhhhhhcccccccCCCCCccCCCC-CCC
Q 039013           37 QLLLRELGFDLTKLKHYERLSSTIHRESDRVSPGG-PDP   74 (77)
Q Consensus        37 ~~lLrelg~~~sk~k~~~r~~~~~~~~s~RlSPGG-PDP   74 (77)
                      +.|.--.|......+++++..++.|..=+++||.| |||
T Consensus        13 ~~L~a~tGls~~~I~~yR~~~WieG~hyk~vs~dg~p~~   51 (72)
T PF06806_consen   13 ELLMAITGLSPGTIKRYRKKSWIEGRHYKKVSPDGQPKP   51 (72)
T ss_dssp             HHHHHHH---HHHHHHHHTTT--TTTSEEEE-SSSS--T
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhhccceeEecCCCCCcCC
Confidence            44666678888888888887898999999999998 655

; PDB: 2KVV_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00