Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 110
pfam00403 62
pfam00403, HMA, Heavy-metal-associated domain
5e-06 cd00371 63
cd00371, HMA, Heavy-metal-associated domain (HMA)
0.003
>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain
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Score = 40.3 bits (95), Expect = 5e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C C +V + +SKL G+ VD+ +VTV D
Sbjct: 6 GMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGD 43
>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones
Back Show alignment and domain information
Score = 33.3 bits (77), Expect = 0.003
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 27 ANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLN 69
M C C ++ + + KL G+E VD+ + TV+ D ++
Sbjct: 5 EGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVS 47
HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
110
PF00403 62
HMA: Heavy-metal-associated domain; InterPro: IPR0
99.64 COG2608 71
CopZ Copper chaperone [Inorganic ion transport and
99.55 KOG4656 247
consensus Copper chaperone for superoxide dismutas
99.41 KOG1603 73
consensus Copper chaperone [Inorganic ion transpor
99.31 PRK10671 834
copA copper exporting ATPase; Provisional
98.76 PLN02957 238
copper, zinc superoxide dismutase
98.66 COG2217 713
ZntA Cation transport ATPase [Inorganic ion transp
98.62 KOG0207 951
consensus Cation transport ATPase [Inorganic ion t
98.17 TIGR00003 68
copper ion binding protein. This model describes a
98.16 KOG0207 951
consensus Cation transport ATPase [Inorganic ion t
98.07 PRK11033 741
zntA zinc/cadmium/mercury/lead-transporting ATPase
97.65 PRK10671 834
copA copper exporting ATPase; Provisional
97.63 PRK13748 561
putative mercuric reductase; Provisional
95.32 PF01206 70
TusA: Sulfurtransferase TusA; InterPro: IPR001455
94.98 TIGR02052 92
MerP mercuric transport protein periplasmic compon
93.96 PRK11018 78
hypothetical protein; Provisional
91.68 cd03420 69
SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like
91.48 PRK00299 81
sulfur transfer protein SirA; Reviewed
90.4 COG0425 78
SirA Predicted redox protein, regulator of disulfi
90.33 COG1888 97
Uncharacterized protein conserved in archaea [Func
89.65 cd00291 69
SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered a
89.58 cd03421 67
SirA_like_N SirA_like_N, a protein of unknown func
88.87 cd03423 69
SirA SirA (also known as UvrY, and YhhP) belongs t
88.87 cd03422 69
YedF YedF is a bacterial SirA-like protein of unkn
88.63 cd00371 63
HMA Heavy-metal-associated domain (HMA) is a conse
87.12 PF02680 95
DUF211: Uncharacterized ArCR, COG1888; InterPro: I
86.19 PF01883 72
DUF59: Domain of unknown function DUF59; InterPro:
81.09 PRK14054 172
methionine sulfoxide reductase A; Provisional
80.89
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures
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Probab=99.64 E-value=2.1e-15 Score=90.44 Aligned_cols=61 Identities=26% Similarity=0.403 Sum_probs=56.3
Q ss_pred EEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCc
Q 039056 24 VVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCY 87 (110)
Q Consensus 24 ~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~ 87 (110)
+|.+ ||+|++|+++|+++|.+++||.++.+|+.+++++|.++.+ .+++++|.++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~---~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPD---KTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTT---TSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecC---CCCHHHHHHHHHHhCcC
Confidence 4788 9999999999999999999999999999999999999843 36789999999999985
These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.55 E-value=4.5e-14 Score=87.74 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=59.8
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
...|.+ ||+|++|+++|+++|.+++||.++++|+..+++.|.++. ..++.++|.++++.+||....
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~---~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS---NKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC---CcCCHHHHHHHHHHcCCCeee
Confidence 468899 999999999999999999999999999999999999883 357899999999999998654
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.41 E-value=1.7e-12 Score=95.30 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=70.6
Q ss_pred eEEEEEeeccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEeeCChhHH-
Q 039056 21 QVIVVTANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFISVSGLFAS- 99 (110)
Q Consensus 21 ~~~~~~Vgm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~~~g~~~~- 99 (110)
.+.+|.|.|+|++|++.|++.|..++||.+++||+..+.+.|.+. .++.+|...|+.+|.++++.+.++-.+.
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts------~p~s~i~~~le~tGr~Avl~G~G~psava 80 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETS------VPPSEIQNTLENTGRDAVLRGAGKPSAVA 80 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEcc------CChHHHHHHHHhhChheEEecCCchhHHH
Confidence 457899999999999999999999999999999999999999976 7889999999999999999887755443
Q ss_pred --HHHHhhh
Q 039056 100 --AAFLRFK 106 (110)
Q Consensus 100 --a~~~~~~ 106 (110)
|++++|.
T Consensus 81 l~at~a~~~ 89 (247)
T KOG4656|consen 81 LLATVAKYT 89 (247)
T ss_pred HHHHHHHhc
Confidence 6666654
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.31 E-value=2e-11 Score=76.02 Aligned_cols=66 Identities=27% Similarity=0.498 Sum_probs=59.5
Q ss_pred eeEEEEEeeccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcC-CceEEE
Q 039056 20 FQVIVVTANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISG-CYQFFI 91 (110)
Q Consensus 20 ~~~~~~~Vgm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G-~~~~~~ 91 (110)
.+..++.++|||.+|..+|++.|+.++||+++++|..+++++|.+. .+|..+.+.+.+.| ..+.+|
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~------~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN------VDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe------cCHHHHHHHHHhcCCCceEEe
Confidence 4567888899999999999999999999999999999999999997 67899999999988 555554
>PRK10671 copA copper exporting ATPase; Provisional
Back Show alignment and domain information
Probab=98.76 E-value=4.5e-08 Score=83.95 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.0
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
+++++.| ||+|++|+.+|+++|++++||.+++||+. +.++.++ .+++.+.+++++.||....
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~------~~~~~i~~~i~~~Gy~~~~ 65 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT------ASAEALIETIKQAGYDASV 65 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec------CCHHHHHHHHHhcCCcccc
Confidence 4689999 99999999999999999999999999994 4555544 4678999999999997543
>PLN02957 copper, zinc superoxide dismutase
Back Show alignment and domain information
Probab=98.66 E-value=2.6e-07 Score=69.16 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=65.4
Q ss_pred eEEEEEeeccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEeeCChh---
Q 039056 21 QVIVVTANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFISVSGLF--- 97 (110)
Q Consensus 21 ~~~~~~Vgm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~~~g~~--- 97 (110)
+++.|.++|+|++|+.+|++.|++++||..+.+|+..++++|.++ ..++.+.+.+++.||...+++...-.
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~------~~~~~I~~aIe~~Gy~a~~~~~~~~~~~~ 79 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS------SPVKAMTAALEQTGRKARLIGQGDPEDFL 79 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec------CCHHHHHHHHHHcCCcEEEecCCCccccc
Confidence 457788899999999999999999999999999999999999874 46788999999999998777765443
Q ss_pred HHHHHHhh
Q 039056 98 ASAAFLRF 105 (110)
Q Consensus 98 ~~a~~~~~ 105 (110)
+.+|++.+
T Consensus 80 ~~~av~~~ 87 (238)
T PLN02957 80 VSAAVAEF 87 (238)
T ss_pred cceEEEEe
Confidence 24454443
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=98.62 E-value=1.2e-07 Score=80.46 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=56.7
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCC-hHHHHHHHHhcCCceE
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVK-DDPTRSRVKISGCYQF 89 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~-~~~I~~~i~~~G~~~~ 89 (110)
+..|.+ ||+|..|+.+|| .|++++||.++.||+.++++.+.++.. ..+ ++++...+++.||+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~---~~~~~~~~~~~v~~~gy~~~ 68 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPE---EVDLPADIVAAVEKAGYSAR 68 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEeccc---ccccHHHHHHHHHhcCcccc
Confidence 468899 999999999999 999999999999999999999999842 234 7899999999999654
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=98.17 E-value=5.1e-06 Score=71.77 Aligned_cols=72 Identities=22% Similarity=0.447 Sum_probs=64.6
Q ss_pred eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE------------EEeeCC
Q 039056 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF------------FISVSG 95 (110)
Q Consensus 28 gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~------------~~~~~g 95 (110)
||+|..|.+.|++++.+.+|+.++.|++.+++.+|.++ ...+++.+.+.+++.|++.. .+.+.|
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~----~~~~~~~i~~~ied~gf~~~~~~~~~~~~~~~~l~v~G 77 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD----NIVSPESIKETIEDMGFEASLLSDSEITASKCYLSVNG 77 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe----eccCHHHHHHHhhcccceeeecccCccccceeEEEecC
Confidence 89999999999999999999999999999999999998 35899999999999999854 456779
Q ss_pred hhHHHHHH
Q 039056 96 LFASAAFL 103 (110)
Q Consensus 96 ~~~~a~~~ 103 (110)
|+|..|..
T Consensus 78 mtC~scv~ 85 (951)
T KOG0207|consen 78 MTCASCVA 85 (951)
T ss_pred ceeHHHHH
Confidence 98887764
>TIGR00003 copper ion binding protein
Back Show alignment and domain information
Probab=98.16 E-value=4.3e-05 Score=42.31 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=51.2
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCc
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCY 87 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~ 87 (110)
+..+.+ +++|..|...+++.+++.+++....+++...++.+.++. .......+...+...||.
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~ 66 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDA---PQATEICIAEAILDAGYE 66 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCC---CCCCHHHHHHHHHHcCCC
Confidence 356888 999999999999999999999999999999999998752 123556666667777763
This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=98.07 E-value=1.5e-05 Score=69.06 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=65.8
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEeeCCh
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFISVSGL 96 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~~~g~ 96 (110)
++++|.+ ||.|.+|..+|++.|.+++||.++.+++.++++.|.++. ....|-.+.+.++..|+.+.+.+..+.
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~---~~~~pr~i~k~ie~~~~~~~~~~~~~~ 219 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDP---EITGPRDIIKAIEETGFEASVRPYGDT 219 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecc---cccChHHHHHHHHhhcccceeeecccc
Confidence 5789999 999999999999999999999999999999999999984 457889999999999999877775543
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Back Show alignment and domain information
Probab=97.65 E-value=0.00031 Score=60.14 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=53.6
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCce
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~ 88 (110)
++..+.+ ||+|++|..++++.+.+++|+..+.+++.++++.+.++.+ .. +++.+.+++.||..
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~----~~-~~I~~aI~~~Gy~a 116 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADND----IR-AQVESAVQKAGFSL 116 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEeccc----ch-HHHHHHHHhccccc
Confidence 4577889 9999999999999999999999999999999999887632 22 67778888899864
>PRK10671 copA copper exporting ATPase; Provisional
Back Show alignment and domain information
Probab=97.63 E-value=0.00023 Score=61.37 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=53.4
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF 89 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~ 89 (110)
++.+.+ ||+|.+|..++++.+.+++|+..+.+|+.+++..+.+. .+++.+.+.+++.||...
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~------~s~~~I~~~I~~~Gy~a~ 162 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGS------ASPQDLVQAVEKAGYGAE 162 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEcc------CCHHHHHHHHHhcCCCcc
Confidence 467889 99999999999999999999999999999999888643 456778888899998754
>PRK13748 putative mercuric reductase; Provisional
Back Show alignment and domain information
Probab=95.32 E-value=0.32 Score=39.89 Aligned_cols=41 Identities=20% Similarity=0.445 Sum_probs=35.3
Q ss_pred EEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEe
Q 039056 24 VVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKA 64 (110)
Q Consensus 24 ~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~ 64 (110)
.+.+ +|+|.+|..+++..+...+++....+++..+...+.+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~ 44 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAI 44 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEE
Confidence 3557 8999999999999999999988888898888877764
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase
Back Show alignment and domain information
Probab=94.98 E-value=0.21 Score=29.90 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=40.9
Q ss_pred EEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 24 VVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 24 ~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
++.+ |+.||....++.++|.+++ .+..+.|..+ ++.....|...++..|+.-+-
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~---------~G~~l~v~~d----~~~~~~di~~~~~~~g~~~~~ 56 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELP---------PGEVLEVLVD----DPAAVEDIPRWCEENGYEVVE 56 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSG---------TT-EEEEEES----STTHHHHHHHHHHHHTEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcC---------CCCEEEEEEC----CccHHHHHHHHHHHCCCEEEE
Confidence 5777 9999999999999999875 3356667766 345668899999999986333
This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
>TIGR02052 MerP mercuric transport protein periplasmic component
Back Show alignment and domain information
Probab=93.96 E-value=0.75 Score=27.38 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=46.1
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCc
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCY 87 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~ 87 (110)
...+.+ +++|..|...++..+...+++....+++...+..+.... .......+...+...|+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~ 87 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDD---EKTNVKALTEATTDAGYP 87 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECC---CCCCHHHHHHHHHhcCCC
Confidence 346667 899999999999999999998888888888887666431 112445555555667765
This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
>PRK11018 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=91.68 E-value=2.1 Score=26.57 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=43.1
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF 89 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~ 89 (110)
..++.+ |+.||...-+.+++|.+++ ..+.+.|..+ ++.....|...+++.|+.-+
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~---------~G~~L~V~~d----~~~a~~di~~~~~~~G~~v~ 63 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLK---------KGEILEVVSD----CPQSINNIPLDARNHGYTVL 63 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCC---------CCCEEEEEeC----CccHHHHHHHHHHHcCCEEE
Confidence 468888 9999999999999998875 3345666655 34566889999999998744
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox
Back Show alignment and domain information
Probab=91.48 E-value=1.5 Score=26.39 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=41.6
Q ss_pred EEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEE
Q 039056 25 VTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFI 91 (110)
Q Consensus 25 ~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~ 91 (110)
+.+ |+.||.-.-+.+++|.+++ ..+.+.|..+ ++.....|....+..|+.-+..
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~---------~G~~l~V~~d----~~~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQ---------DGEQLEVKAS----DPGFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEEC----CccHHHHHHHHHHHcCCEEEEE
Confidence 456 8999999999999998875 3355666665 3466788999999999875433
SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
>PRK00299 sulfur transfer protein SirA; Reviewed
Back Show alignment and domain information
Probab=90.40 E-value=3 Score=26.03 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=43.1
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF 89 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~ 89 (110)
..++.. |+.||.-.-+.+++|.+++ ..+.+.|..+ ++.....|....+..|++-+
T Consensus 9 ~~~lD~~Gl~CP~Pll~~kk~l~~l~---------~G~~l~V~~d----d~~~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 9 DHTLDALGLRCPEPVMMVRKTVRNMQ---------PGETLLIIAD----DPATTRDIPSFCRFMDHELL 64 (81)
T ss_pred CeEEecCCCCCCHHHHHHHHHHHcCC---------CCCEEEEEeC----CccHHHHHHHHHHHcCCEEE
Confidence 467888 9999999999999998875 3355666665 34567889999999998644
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=90.33 E-value=2.4 Score=26.44 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=40.0
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcC
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISG 85 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G 85 (110)
..++.+ |++|+.-...+.++|.+++ ....+.|..+ ++.....|...+++.|
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~---------~Ge~LeV~~d----dp~~~~dIp~~~~~~~ 56 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLK---------PGEILEVIAD----DPAAKEDIPAWAKKEG 56 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCC---------CCCEEEEEec----CcchHHHHHHHHHHcC
Confidence 468889 9999999999999999876 4566677665 3455678888888555
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Back Show alignment and domain information
Probab=89.65 E-value=3.3 Score=27.04 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=40.3
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceE-------EEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCC
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEY-------IVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGC 86 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v-------~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~ 86 (110)
..+++.+ --|-+.-.-.+.+.|.+++||+.+ +++..+-++++.+. .++.++|.+.+++.|.
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~-----~ldydei~~~iE~~Gg 74 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGT-----NLDYDEIEEVIEELGG 74 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcC-----CCCHHHHHHHHHHcCC
Confidence 4456666 333333344555668888888764 33334556777765 5899999999999995
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD
Back Show alignment and domain information
Probab=89.58 E-value=2.8 Score=24.59 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=40.0
Q ss_pred EEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE
Q 039056 25 VTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF 89 (110)
Q Consensus 25 ~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~ 89 (110)
+.+ |+.||.-..++.++|.+++ ....+.|..+ .+.....|...++..||.-+
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~---------~g~~l~v~~d----~~~~~~~i~~~~~~~g~~~~ 54 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLK---------SGEVLEVLLD----DPGAVEDIPAWAKETGHEVL 54 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCC---------CCCEEEEEec----CCcHHHHHHHHHHHcCCEEE
Confidence 455 8999999999999998864 3455666665 23567889999999998744
Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain
Back Show alignment and domain information
Probab=88.87 E-value=2.6 Score=24.91 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=37.9
Q ss_pred EEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 25 VTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 25 ~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
+.+ |+.||...-+.+++| ++. .++.+.|..+ .+.....|...+++.||.-..
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~---------~g~~l~v~~d----~~~s~~~i~~~~~~~G~~~~~ 54 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELE---------AGGEIEVLVD----NEVAKENVSRFAESRGYEVSV 54 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcC---------CCCEEEEEEc----ChhHHHHHHHHHHHcCCEEEE
Confidence 456 899999999999999 543 2345566554 234567899999999987533
The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence
Back Show alignment and domain information
Probab=88.87 E-value=3.5 Score=24.71 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=40.5
Q ss_pred EEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 25 VTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 25 ~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
+.+ |..||.-.-+.+++|.+++ ..+.+.|..+ ++.....|...+++.||.-+.
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~---------~G~~l~V~~d----d~~s~~di~~~~~~~g~~~~~ 55 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMK---------PGDTLLVLAT----DPSTTRDIPKFCTFLGHELLA 55 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCC---------CCCEEEEEeC----CCchHHHHHHHHHHcCCEEEE
Confidence 345 8999999999999998864 3345666665 346778899999999987543
The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function
Back Show alignment and domain information
Probab=88.63 E-value=3.6 Score=24.75 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=40.7
Q ss_pred EEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 25 VTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 25 ~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
+.+ |..||.-.-+.+++|++++ ....+.|..+ ++.....|.+.++..|+.-+.
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~---------~G~~l~V~~d----~~~s~~ni~~~~~~~g~~v~~ 55 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLK---------PGEILEVISD----CPQSINNIPIDARNHGYKVLA 55 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEec----CchHHHHHHHHHHHcCCEEEE
Confidence 345 8999999999999999875 3355666665 346778899999999987543
SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones
Back Show alignment and domain information
Probab=87.12 E-value=2.3 Score=20.52 Aligned_cols=38 Identities=32% Similarity=0.625 Sum_probs=30.6
Q ss_pred eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEec
Q 039056 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65 (110)
Q Consensus 28 gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~ 65 (110)
++.|..|...++..+...+++.....++......+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 78999999999999888888777777777776666543
HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function
Back Show alignment and domain information
Probab=86.19 E-value=6.6 Score=25.73 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=39.7
Q ss_pred eeEEEEEe-eccChhHHHHHHHHHhcCCCcceEE-----EeCCCC--EEEEEecCCCCCCCChHHHHHHHHhcCC
Q 039056 20 FQVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYI-----VDVPNK--RVTVKADFGLNKNVKDDPTRSRVKISGC 86 (110)
Q Consensus 20 ~~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~-----Vdl~~~--kv~V~~~~~~~~~~~~~~I~~~i~~~G~ 86 (110)
...++|.| --|-+. .-.+.+.|.+++||+.+. +|..+. ++++.|+ .++.++|.+++++.|.
T Consensus 4 irRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~-----~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGD-----DIDFDEIKEAIEELGG 72 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEES-----SE-HHHHHHHHHHTT-
T ss_pred eeEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeC-----CCCHHHHHHHHHHcCC
Confidence 34567777 335444 445666799999988753 444544 4555564 5899999999999994
; PDB: 3BPD_I 2RAQ_F 2X3D_E.
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function
Back Show alignment and domain information
Probab=81.09 E-value=3.8 Score=24.49 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=21.3
Q ss_pred EEEEEeeccChhHH------HHHHHHHhcCCCcceEEE
Q 039056 22 VIVVTANMGCTRCR------GRVSQIISKLTGLEEYIV 53 (110)
Q Consensus 22 ~~~~~Vgm~C~~C~------~~Vek~L~~i~GV~~v~V 53 (110)
++.+.+.+..++|. ..|+++|..++|+.+++|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 45566655555554 678888999999988875
The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
>PRK14054 methionine sulfoxide reductase A; Provisional
Back Show alignment and domain information
Probab=80.89 E-value=3.7 Score=29.53 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCCCcceEEEeCCCCE-------------------EEEEecCCCCCCCChHHHHHHH
Q 039056 32 TRCRGRVSQIISKLTGLEEYIVDVPNKR-------------------VTVKADFGLNKNVKDDPTRSRV 81 (110)
Q Consensus 32 ~~C~~~Vek~L~~i~GV~~v~Vdl~~~k-------------------v~V~~~~~~~~~~~~~~I~~~i 81 (110)
++|=+-++..+.+++||.++.+-+.++. |.|.+|+ ..++.++|.+..
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp---~~isy~~Ll~~f 75 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDP---AVISYRELLELF 75 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECC---CcCCHHHHHHHH
Confidence 6788888999999999999998877665 8888984 468888887543
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 110
d1mwza_ 73
d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,
0.001 d1osda_ 72
d.58.17.1 (A:) Mercuric ion binding protein MerP {
0.001 d1p6ta1 72
d.58.17.1 (A:1-72) Potential copper-translocating
0.002 d2ggpb1 72
d.58.17.1 (B:1-72) Copper transporter domain ccc2a
0.002 d1fe0a_ 66
d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX
0.002 d2qifa1 69
d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt
0.002 d1kvja_ 79
d.58.17.1 (A:) Menkes copper-transporting ATPase {
0.002 d1qupa2 72
d.58.17.1 (A:2-73) Copper chaperone for superoxide
0.003 d1cpza_ 68
d.58.17.1 (A:) Copper chaperone {Enterococcus hira
0.003
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]
Score = 33.2 bits (76), Expect = 0.001
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C C +V + +L G+ + V +++ V AD
Sbjct: 11 GMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDAD 48
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]
Score = 32.8 bits (75), Expect = 0.001
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C+ C V + ISK+ G+ + V ++ V D
Sbjct: 11 GMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFD 48
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]
Score = 32.4 bits (74), Expect = 0.002
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 29 MGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C C R+ + + ++ G+ + V++ + V V D
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYD 51
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 32.4 bits (74), Expect = 0.002
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 21 QVIVVTANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
+VI+ M C+ C ++ + L G+ + + + V D
Sbjct: 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYD 47
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]
Score = 32.1 bits (73), Expect = 0.002
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
+M C C VS++++KL G +Y +D+PNK+V ++++
Sbjct: 8 DMTCGGCAEAVSRVLNKLGG-VKYDIDLPNKKVCIESE 44
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]
Score = 32.1 bits (73), Expect = 0.002
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C C V + +L G+ V++ +V V D
Sbjct: 10 GMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFD 47
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]
Score = 32.1 bits (73), Expect = 0.002
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C C + Q I K+ G+ V + K T+ D
Sbjct: 16 GMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYD 53
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 31.7 bits (72), Expect = 0.003
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 23 IVVTANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C C + + + G+ D+ + ++V++
Sbjct: 8 ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS 50
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]
Score = 31.7 bits (72), Expect = 0.003
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
M C C R+ + + +++G+++ V + ++ VK D
Sbjct: 8 GMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFD 45
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 110
d1fe0a_ 66
ATX1 metallochaperone protein (ATOX1) {Human (Homo
99.77 d1qupa2 72
Copper chaperone for superoxide dismutase, N-termi
99.76 d2aw0a_ 72
Menkes copper-transporting ATPase {Human (Homo sap
99.72 d1osda_ 72
Mercuric ion binding protein MerP {Ralstonia metal
99.72 d1cpza_ 68
Copper chaperone {Enterococcus hirae [TaxId: 1354]
99.72 d2ggpb1 72
Copper transporter domain ccc2a {Baker's yeast (Sa
99.72 d1cc8a_ 72
ATX1 metallochaperone protein (ATOX1) {Baker's yea
99.71 d2qifa1 69
Copper chaperone {Bacillus subtilis, CopZ [TaxId:
99.71 d1q8la_ 84
Menkes copper-transporting ATPase {Human (Homo sap
99.69 d1p6ta1 72
Potential copper-translocating P-type ATPase CopA
99.69 d1kvja_ 79
Menkes copper-transporting ATPase {Human (Homo sap
99.67 d1p6ta2 79
Potential copper-translocating P-type ATPase CopA
99.65 d1sb6a_ 64
Copper chaperone {Synechocystis sp. pcc 6803, Scat
99.65 d1mwza_ 73
Metal ion-transporting ATPase ZntA, N-terminal dom
99.63 d1je3a_ 97
hypothetical protein YedF (EC005) {Escherichia col
95.43 d1dcja_ 81
SirA {Escherichia coli [TaxId: 562]}
94.49 d1jdqa_ 98
Hypothetical protein TM0983 {Thermotoga maritima [
93.46 d3bpda1 91
Uncharacterized protein AF1549 {Archaeoglobus fulg
88.8 d1uwda_ 102
Hypothetical protein TM0487 {Thermotoga maritima [
86.28 d1pava_ 78
Hypothetical protein Ta1170/Ta1414 {Archaeon Therm
85.83 d2raqa1 93
Uncharacterized protein MTH889 {Methanobacterium t
84.87 d2cu6a1 91
Hypothetical protein TTHB138 {Thermus thermophilus
80.14
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]
Probab=99.77 E-value=1.4e-18 Score=104.39 Aligned_cols=65 Identities=26% Similarity=0.519 Sum_probs=60.9
Q ss_pred EEEEEeeccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEee
Q 039056 22 VIVVTANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFISV 93 (110)
Q Consensus 22 ~~~~~Vgm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~~ 93 (110)
+++|+|+|+|++|+++|+++|++++|+ ++++|+.+++++|.++ ++++.|.++|+++||++.++++
T Consensus 2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~------~~~~~i~~~I~~~Gy~a~lig~ 66 (66)
T d1fe0a_ 2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE------HSMDTLLATLKKTGKTVSYLGL 66 (66)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES------SCHHHHHHHHHTTTSCEEEEEC
T ss_pred CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEee------CCHHHHHHHHHHhCCeEEEeeC
Confidence 579999999999999999999999998 6999999999999987 6889999999999999998874
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=1.9e-18 Score=105.39 Aligned_cols=65 Identities=12% Similarity=0.280 Sum_probs=61.1
Q ss_pred EEEEEeeccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEe
Q 039056 22 VIVVTANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFIS 92 (110)
Q Consensus 22 ~~~~~Vgm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~ 92 (110)
+.+|.|+|+|++|+.+|++.|++++||.+++||+.+++++|.++ .++++|.++|++.||++++.+
T Consensus 7 ~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~------~~~~~i~~~I~~~G~~A~l~g 71 (72)
T d1qupa2 7 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS------VAPSTIINTLRNCGKDAIIRG 71 (72)
T ss_dssp EEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES------SCHHHHHHHHHHTTCCCEEEC
T ss_pred EEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEee------CCHHHHHHHHHHhCCCEEEec
Confidence 47899999999999999999999999999999999999999986 688999999999999998854
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2e-17 Score=100.35 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=62.1
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
++.+|.| ||+|++|+.+|++.|.+++||.+++||+.+++++|.+++ ..+++++|.++|+++||++.+
T Consensus 3 ~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~---~~~~~~~i~~~i~~~Gy~a~l 70 (72)
T d2aw0a_ 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDP---LLTSPETLRGAIEDMGFDATL 70 (72)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECT---TTCCHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECC---CCCCHHHHHHHHHhhCCCcEe
Confidence 5688999 999999999999999999999999999999999999984 457899999999999998755
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]
Probab=99.72 E-value=1.8e-17 Score=100.66 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=63.5
Q ss_pred eeEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEE
Q 039056 20 FQVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFI 91 (110)
Q Consensus 20 ~~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~ 91 (110)
.+++.|.| ||+|++|+.+|++.|+++|||.+++||+.++++.|.+++ ..+++++|.++|++.||++.+.
T Consensus 2 tqt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~---~~~~~~~i~~~i~~~Gy~a~v~ 71 (72)
T d1osda_ 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDD---AKTSVQKLTKATADAGYPSSVK 71 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEET---TTCCHHHHHHHHHHTTCCCEEC
T ss_pred CeEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECC---CCCCHHHHHHHHHhcCCCeEeC
Confidence 46789999 999999999999999999999999999999999999984 3578999999999999998753
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]
Probab=99.72 E-value=1.7e-17 Score=99.83 Aligned_cols=64 Identities=19% Similarity=0.385 Sum_probs=59.6
Q ss_pred EEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEE
Q 039056 24 VVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFF 90 (110)
Q Consensus 24 ~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~ 90 (110)
+|.| ||+|++|+.+|++.|++++||.+++||+.+++++|.+++ ..+++++|.++|+++||++.+
T Consensus 3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~---~~~~~~~i~~~i~~~Gy~a~v 67 (68)
T d1cpza_ 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDE---ANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT---TTCCHHHHHHHHHTTSSCEEE
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECC---CCCCHHHHHHHHHhhCCCcEE
Confidence 6889 999999999999999999999999999999999999984 457899999999999998765
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.6e-17 Score=100.88 Aligned_cols=68 Identities=15% Similarity=0.333 Sum_probs=62.4
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEe
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFIS 92 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~ 92 (110)
+++.|.| ||+|++|+.+|++.|.+++||.+++||+.+++++|.++. .+++++|.++|+++||.+.++.
T Consensus 2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~----~~~~~~i~~~i~~~Gy~a~~~~ 70 (72)
T d2ggpb1 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDN----EVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECS----SCCHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECC----CCCHHHHHHHHHHhCCCeEEcc
Confidence 4689999 999999999999999999999999999999999999973 3688999999999999987754
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=3.2e-17 Score=99.87 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=59.5
Q ss_pred eeEEEEEeeccChhHHHHHHHHHhcC-CCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE
Q 039056 20 FQVIVVTANMGCTRCRGRVSQIISKL-TGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF 89 (110)
Q Consensus 20 ~~~~~~~Vgm~C~~C~~~Vek~L~~i-~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~ 89 (110)
.++++|+|+|||++|+++|++.|.++ +||.++++|+.+++++|.++ +++++|.++|+++||++.
T Consensus 3 ~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~------~~~~~i~~~i~~~G~~~~ 67 (72)
T d1cc8a_ 3 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT------LPYDFILEKIKKTGKEVR 67 (72)
T ss_dssp CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEES------SCHHHHHHHHHTTSSCEE
T ss_pred cEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeec------CCHHHHHHHHHHHCCccC
Confidence 57899999999999999999999999 59999999999999999986 688999999999999864
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]
Probab=99.71 E-value=4.8e-17 Score=97.96 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=60.0
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCce
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~ 88 (110)
++.+|.| ||+|++|+.+|+++|++++||.++++|+.+++++|.+++ ..+++++|.+.|+++||+.
T Consensus 2 ~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~---~~~~~~~i~~~i~~~Gy~~ 67 (69)
T d2qifa1 2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDA---DKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT---TTCCHHHHHHHHHHTTCEE
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECC---CCCCHHHHHHHHHHhCCcc
Confidence 4678999 999999999999999999999999999999999999984 3578999999999999864
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.3e-17 Score=101.85 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=66.0
Q ss_pred CCCceeEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEe
Q 039056 16 TLPSFQVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFIS 92 (110)
Q Consensus 16 ~~~~~~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~ 92 (110)
+.+....+.|.| ||+|++|+.+|++.|++++||.++++|+.+++++|.+++ ..++++.|.++|+++||++.+..
T Consensus 4 ~~~~~~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~---~~~~~~~i~~~I~~~Gy~a~~~~ 78 (84)
T d1q8la_ 4 AQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQP---HLISVEEMKKQIEAMGFPAFVKK 78 (84)
T ss_dssp SSSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECT---TTCCHHHHHHHHHHTTCCEECSC
T ss_pred CCCCCEEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecc---cccCHHHHHHHHHHhCCccEEcC
Confidence 344556789999 999999999999999999999999999999999999984 35789999999999999877654
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=7e-17 Score=97.87 Aligned_cols=66 Identities=17% Similarity=0.343 Sum_probs=60.7
Q ss_pred eeEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCce
Q 039056 20 FQVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88 (110)
Q Consensus 20 ~~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~ 88 (110)
..+++|.| ||+|++|+.+|++.|.+++||.+++||+.+++++|.+++ ...++++|.++|+++||+.
T Consensus 5 ~~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~---~~~~~~~i~~~i~~~Gy~v 71 (72)
T d1p6ta1 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDP---AETGTAAIQEKIEKLGYHV 71 (72)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECT---TTSCHHHHHHHHHHHTCEE
T ss_pred ceEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECC---CCCCHHHHHHHHHHhCCcc
Confidence 45789999 999999999999999999999999999999999999974 3578999999999999864
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.7e-16 Score=96.93 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=63.3
Q ss_pred eeEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEE
Q 039056 20 FQVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFI 91 (110)
Q Consensus 20 ~~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~ 91 (110)
..++.|.| ||+|++|+.+|++.|++++||.++++|+.+++++|.++. ..+++++|.++|+++||++.+.
T Consensus 7 ~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~---~~~~~~~i~~~i~~~GY~~~~~ 76 (79)
T d1kvja_ 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDP---KLQTPKTLQEAIDDMGFDAVIH 76 (79)
T ss_dssp CEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECT---TTCCHHHHHHHHHHHTCEEEEC
T ss_pred ceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECC---CCCCHHHHHHHHHhcCCCcEeC
Confidence 46789999 999999999999999999999999999999999999973 4589999999999999987664
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=2.1e-16 Score=97.38 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=63.6
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceEEEee
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFISV 93 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~~~~~ 93 (110)
+++.|.| ||+|++|+.+|++.|.+++||.++++|+.+++++|.+++ ..+++++|.++|+++||++.+.+.
T Consensus 2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~---~~~~~~~i~~~i~~~Gy~~~~~~~ 72 (79)
T d1p6ta2 2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNP---KEASVSDLKEAVDKLGYKLKLKGE 72 (79)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECT---TTCCHHHHHHHHHHHTCCEEESCS
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECC---CCCCHHHHHHHHHHHCCceEECCc
Confidence 4688999 999999999999999999999999999999999999974 357899999999999999776543
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]
Probab=99.65 E-value=9e-17 Score=95.56 Aligned_cols=61 Identities=20% Similarity=0.402 Sum_probs=56.8
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCce
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~ 88 (110)
+++|.| ||+|++|+.+|++.|++++||.++++|+.+++++|.++ +++++|.++|.++||+.
T Consensus 2 t~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~------~~~~~i~~~i~~~GY~v 63 (64)
T d1sb6a_ 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA------LGEEQLRTAIASAGHEV 63 (64)
T ss_dssp EEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESS------SCHHHHHHHHHHHCCCC
T ss_pred eEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccC------CCHHHHHHHHHHcCCCC
Confidence 368999 99999999999999999999999999999999999865 68899999999999864
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=7.1e-16 Score=93.69 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=57.5
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCce
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~ 88 (110)
++++|.| ||+|++|+.+|++.|.+++||.+++||+.+++++|.++. ...++|.++|.++||..
T Consensus 3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~-----~~~~~i~~~i~~~GY~v 66 (73)
T d1mwza_ 3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADN-----DIRAQVESALQKAGYSL 66 (73)
T ss_dssp CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESS-----CCHHHHHHHHHHHTCCC
T ss_pred CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECC-----CCHHHHHHHHHHcCCcc
Confidence 4588999 999999999999999999999999999999999999873 35689999999999864
>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: hypothetical protein YedF (EC005)
species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.041 Score=33.32 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=45.4
Q ss_pred ceeEEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE
Q 039056 19 SFQVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF 89 (110)
Q Consensus 19 ~~~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~ 89 (110)
.....++.+ |+.||....++.+.|.+++ ..+.+.|..+ ++.....|...+++.||.-+
T Consensus 24 ~~~d~~LD~~G~~CP~Pll~~k~~l~~l~---------~Ge~L~V~~d----d~~a~~di~~~~~~~g~~v~ 82 (97)
T d1je3a_ 24 IVPDYRLDMVGEPCPYPAVATLEAMPQLK---------KGEILEVVSD----CPQSINNIPLDARNHGYTVL 82 (97)
T ss_dssp CCEEEEECSBCCSSSSSTHHHHHHTTTCC---------SSCEEEEEEB----CSSSSCHHHHHHHHHTCSEE
T ss_pred CCCceEEeCCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEeC----CccHHHHHHHHHHHcCCEEE
Confidence 345578888 9999999999999998764 3355677766 34566889999999998743
>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.075 Score=30.78 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=44.0
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCceE
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQF 89 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~~ 89 (110)
..++.+ |+.|+....+++++|.+++ ....+.|..+ ++.....|...++..|+.-+
T Consensus 9 ~~~lD~~G~~CP~P~l~~k~al~~~~---------~G~~l~v~~d----d~~a~~di~~~~~~~g~~~~ 64 (81)
T d1dcja_ 9 DHTLDALGLRCPEPVMMVRKTVRNMQ---------PGETLLIIAD----DPATTRDIPGFCTFMEHELV 64 (81)
T ss_dssp SEEECCTTCCTTHHHHHHHHHHHHCC---------TTCCEEEEEC----STTHHHHHHHHHHHTTCEEE
T ss_pred CeEEECCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEeC----CCcHHHHHHHHHHHcCCEEE
Confidence 478899 9999999999999999865 3355667665 34677889999999997633
>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein TM0983
species: Thermotoga maritima [TaxId: 2336]
Probab=93.46 E-value=0.4 Score=28.68 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=43.6
Q ss_pred EEEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCce
Q 039056 22 VIVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88 (110)
Q Consensus 22 ~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~~ 88 (110)
+.++.+ |+.||....+++++|..++ ....+.|..+ ++.....|.+.+++.|+.-
T Consensus 26 ~~~LD~rG~~CP~Pll~~kkal~~l~---------~Ge~L~V~~d----d~~a~~dI~~~~~~~g~~i 80 (98)
T d1jdqa_ 26 TKTLDVRGEVCPVPDVETKRALQNMK---------PGEILEVWID----YPMSKERIPETVKKLGHEV 80 (98)
T ss_dssp CEEEECSSCCSSHHHHHHHHHHHTCC---------TTCEEEEEES----SCTHHHHHHHHHHHSSCCE
T ss_pred CeeEECCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEeC----CcchHHHHHHHHHHcCCEE
Confidence 467888 9999999999999999875 3346677765 3466788999999999864
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.80 E-value=0.98 Score=26.93 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=44.1
Q ss_pred eeEEEEEe-eccChhHHHHHHHHHhcCCCcceEE-----EeCCCC--EEEEEecCCCCCCCChHHHHHHHHhcCC
Q 039056 20 FQVIVVTA-NMGCTRCRGRVSQIISKLTGLEEYI-----VDVPNK--RVTVKADFGLNKNVKDDPTRSRVKISGC 86 (110)
Q Consensus 20 ~~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~-----Vdl~~~--kv~V~~~~~~~~~~~~~~I~~~i~~~G~ 86 (110)
...++|.| --|-|.-.. +.+.|.+++||+.+. +|..+. ++++.++ .++.++|.+++++.|.
T Consensus 4 irRlVLDVlKPh~p~~~~-~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~-----~idyd~i~~~IE~~Gg 72 (91)
T d3bpda1 4 LRRLVLDVLKPHEPKTIV-FALKLSELENVDGVNIHLSEIDQATENIKITILGN-----NLDYEQIKGVIEDMGG 72 (91)
T ss_dssp EEEEEEEEEEESCSCHHH-HHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEE-----EECHHHHHHHHHTTTC
T ss_pred eeEEEEEeecCCCCCHHH-HHHHHhccCCcceEEEEEEEecccceEEEEEEEec-----CCCHHHHHHHHHHcCC
Confidence 45678888 446665555 778899999998763 444444 4445554 4889999999999994
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]
Probab=86.28 E-value=0.43 Score=28.82 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=24.2
Q ss_pred EEEEeeccChhH------HHHHHHHHhcCCCcceEEEeCC
Q 039056 23 IVVTANMGCTRC------RGRVSQIISKLTGLEEYIVDVP 56 (110)
Q Consensus 23 ~~~~Vgm~C~~C------~~~Vek~L~~i~GV~~v~Vdl~ 56 (110)
+.+.+.+++++| ...++++|.+++||.+++|++.
T Consensus 43 V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i~ 82 (102)
T d1uwda_ 43 VKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 82 (102)
T ss_dssp EEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred eEEEEecCCCCCchHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence 444444444444 5678889999999999988763
>d1pava_ d.68.3.3 (A:) Hypothetical protein Ta1170/Ta1414 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
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class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein Ta1170/Ta1414
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=85.83 E-value=0.17 Score=28.94 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=40.9
Q ss_pred EEEEe-eccChhHHHHHHHHHhcCCCcceEEEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCCc
Q 039056 23 IVVTA-NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCY 87 (110)
Q Consensus 23 ~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~~ 87 (110)
.++.+ |+.|+....+++++|.+++. ...+.|..+ ++.....|...++..||.
T Consensus 7 ~~lD~~G~~CP~Pvl~~k~~l~~l~~---------G~~l~v~~d----d~~a~~di~~~~~~~g~~ 59 (78)
T d1pava_ 7 RVIDARGSYCPGPLMELIKAYKQAKV---------GEVISVYST----DAGTKKDAPAWIQKSGQE 59 (78)
T ss_dssp CCCCBSSCSSCTTHHHHHHHHTTSCT---------TCCEECCBS----SSCHHHHHHHHHHHHTEE
T ss_pred eEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEeC----CccHHHHHHHHHHHcCCE
Confidence 46778 99999999999999998753 345566655 346778899999999975
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.87 E-value=2.6 Score=25.09 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=44.2
Q ss_pred eEEEEEe-eccChhHHHHHHHHHhcCCCcceE-----EEeCCCCEEEEEecCCCCCCCChHHHHHHHHhcCC
Q 039056 21 QVIVVTA-NMGCTRCRGRVSQIISKLTGLEEY-----IVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGC 86 (110)
Q Consensus 21 ~~~~~~V-gm~C~~C~~~Vek~L~~i~GV~~v-----~Vdl~~~kv~V~~~~~~~~~~~~~~I~~~i~~~G~ 86 (110)
..++|.| --|-+ -.-.+.+.|.+++||+.+ ++|..+..+.++-+ ...++.++|.+.+++.|.
T Consensus 5 RRlVLDVlKPh~P-~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiE---G~~idyd~i~~~IE~~Gg 72 (93)
T d2raqa1 5 IRIVLDILKPHEP-IIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQ---GNDLDFDEITRAIESYGG 72 (93)
T ss_dssp EEEEEEEECCSCS-CHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEE---CSSCCHHHHHHHHHHTTC
T ss_pred EEEEEEeecCCCC-CHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEE---ecCCCHHHHHHHHHHcCC
Confidence 4577777 34655 566777889999998875 45556665555443 235899999999999994
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]
Probab=80.14 E-value=1.2 Score=26.02 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=25.1
Q ss_pred EEEEeeccChhH------HHHHHHHHhcCCCcceEEEeCC
Q 039056 23 IVVTANMGCTRC------RGRVSQIISKLTGLEEYIVDVP 56 (110)
Q Consensus 23 ~~~~Vgm~C~~C------~~~Vek~L~~i~GV~~v~Vdl~ 56 (110)
+.+.+-++.++| ...++++|.+++|+.+++|++.
T Consensus 38 v~v~l~lt~~~cp~~~~i~~~i~~al~~l~gv~~V~V~~~ 77 (91)
T d2cu6a1 38 AYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 77 (91)
T ss_dssp EEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence 445455555555 5788999999999999888763
