Citrus Sinensis ID: 039114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MNGFEFGRGSIRACSNHESDHSAMNEFMDHPTDHHLSINSAPSLASSSDGASRYNFENVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPSPNQYSHCFNPNGNSPDDDIDSSSSIDNNNSCDATNNASDEEVRHYSLKGSRGRKIHQIDDRDFLDEGRSNKQLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARNRAARNLPCDKTKIKGSNSRILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKPVQDSQN
cccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccEEEEcccEEEEEEcccEEEEEEEEEEcccccc
cccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHHHHHccccccccEEEccccccHHHHHHEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccccEcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEHHHHccHccccHHHcccccccEEEEEHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEccccEEEEcccccEEEEEEEEcccccccc
mngfefgrgsiracsnhesdhsamnefmdhptdhhlsinsapslasssdgasrynfenvnFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDvlgqqyppspnqyshcfnpngnspdddidssssidnnnscdatnnasdeevrhyslkgsrgrkihqiddrdfldegrsnkqlvPLLEEAVRCDMFvevmipkggsydsvqcplFEAARNRAarnlpcdktkikgsNSRILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIrqhsspdgdgtQRLAHYFANGLEarlsgtrtpyfspafiskTSVADVLKAYIVYISaspfrkasNFLTNRMIGKTTEKATKVHIIDFgisygfqwpcfiqrqsfrpggppkiritgielpepgfrpaerVEETGHRLKKAAERCNVPFEYSAIAQKWETIklddlkidrdeVTVVTCMYRlnylpddtqvKDSLRDAVLRLIKRInpdlfvhgvangtynspffVSRFKEAMFHFSALFDMleatvptedqgrliYEREVFGRHAMNVLAcegleridnpetyRQWQSRNLragfrqlpVDQELLRRVKKMVKMDyhkdfdvdengqWMLQGWKGKILYALSFwkpvqdsqn
MNGFEFGRGSIRACSNHESDHSAMNEFMDHPTDHHLSINSAPSLASSSDGASRYNFENVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPSPNQYSHCFNPNGNSPDDDIDSSSSIDNNNScdatnnasdeevrhyslkgsrgrkihqiddrdfldegrsnkqlvplleEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARnraarnlpcdktkikgsnsriLRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRqhsspdgdgTQRLAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYIsaspfrkasnfLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRItgielpepgfrPAERVEETGHRLKkaaercnvpFEYSAIAQKwetiklddlkidrDEVTVVTCMYrlnylpddtqvkDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSrnlragfrqlpvdqELLRRVKKMVKMDYHkdfdvdengqWMLQGWKGKILYALSFWKPVQDSQN
MNGFEFGRGSIRACSNHESDHSAMNEFMDHPTDHHLsinsapslasssdgasRYNFENVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPSPNQYSHCFnpngnspdddidssssidnnnscdATNNASDEEVRHYSLKGSRGRKIHQIDDRDFLDEGRSNKQLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARNRAARNLPCDKTKIKGSNSRILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKPVQDSQN
*****************************************************YNFENVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQ***************************************************************************QLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARNRA***********************************LLT**********************************LAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRP****KIRITGI**********************AAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKP******
MNGFEFGR*******************************************************AVFKYINDILMEEDVASNTCMLQDCLAL*AT**************************GN*P*********************************************************************MFVEVMIP******************************************************SLLTQCAQAAASNDQRVAIELSKQIRQH******GTQRLAHYFANGLEARLSGTRTPY***********ADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQS*****PPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFW*PVQ****
MNGFEFGRGSIRACSNHESDHSAMNEFMDHPTDHHLSINSA********GASRYNFENVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPSPNQYSHCFNPNGNSPDDDIDSSSSIDNNNSCDATNNASDEEVRHYSLKGSRGRKIHQIDDRDFLDEGRSNKQLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARNRAARNLPCDKTKIKGSNSRILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQ*********DGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKPVQDSQN
**G**FGRGSIRACS******************************************NVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPSPNQY*H********************************************************FLDEGRSNKQLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARNR********************RMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKPV*****
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MNGFEFGRGSIRACSNHESDHSAMNEFMDHPTDHHLSINSAPSLASSSDGASRYNFENVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPSPNQYSHCFNPNGNSPDDDIDSSSSIDNNNSCDATNNASDEEVRHYSLKGSRGRKIHQIDDRDFLDEGRSNKQLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARNRAARNLPCDKTKIKGSNSRILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKPVQDSQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
Q9LTI5610 Scarecrow-like protein 11 yes no 0.930 0.963 0.433 1e-139
Q9XE58769 Scarecrow-like protein 14 no no 0.824 0.677 0.474 1e-138
Q9SNB8583 Scarecrow-like protein 30 no no 0.900 0.975 0.434 1e-137
O80933718 Scarecrow-like protein 9 no no 0.601 0.529 0.562 1e-129
P0C884630 Scarecrow-like protein 34 no no 0.857 0.860 0.408 1e-123
P0C883694 Scarecrow-like protein 33 no no 0.729 0.664 0.475 1e-122
Q3EDH0695 Scarecrow-like protein 31 no no 0.632 0.575 0.474 1e-109
Q8H125597 Scarecrow-like protein 5 no no 0.588 0.623 0.302 1e-51
Q9LDL7490 Scarecrow-like transcript no no 0.588 0.759 0.294 2e-49
Q8GVE1544 Chitin-inducible gibberel no no 0.587 0.681 0.282 1e-47
>sp|Q9LTI5|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1 Back     alignment and function desciption
 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/641 (43%), Positives = 385/641 (60%), Gaps = 53/641 (8%)

Query: 1   MNGFEFGRGSIRACSNHESDHSAMNEFMD-HPTDHHLSINSAPSLASSSDGASRYNFENV 59
           ++GF F  GS   C    +  S  N F D H + +  S N +P      +          
Sbjct: 9   VDGFRFENGSGSCCKPRNNLESGNNLFPDFHESQNQSSPNDSPPTVCLDNSP-------- 60

Query: 60  NFSYAVFKYINDILM-EEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPSPNQYSHCFN 118
                V KYIND+LM EED      + +D LALQA E+SFY+++ QQ P S    S   +
Sbjct: 61  -----VLKYINDMLMDEEDFVG---ISRDDLALQAAERSFYEIIQQQSPESDQNTSS--S 110

Query: 119 PNGNSPDDDIDSSSSIDNNNSCDATNNASDEEVRHYSLKGSRGRKIHQIDDRDFLDEGRS 178
            + NS D D    S+  ++++      +S E  R Y          H+ D+ D L+  R 
Sbjct: 111 SDQNSGDQDFCFPSTTTDSSAL----VSSGESQRKYR---------HRNDEEDDLENNRR 157

Query: 179 NKQ---LVPLLEE-AVRCDMFVEVMIPKGGSYDSVQCPLFEAARNRAARNLPCDKTKIKG 234
           NKQ    V  +EE AV+ +  + V        +       ++  NRA R         KG
Sbjct: 158 NKQPAIFVSEMEELAVKLEHVLLVCKTNQEEEEERTVITKQSTPNRAGR--------AKG 209

Query: 235 SNSRILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRL 294
           S+++      + + +  VDL SLLTQCAQA AS DQR A +  K+IR HSS +GDGTQRL
Sbjct: 210 SSNK-----SKTHKTNTVDLRSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRL 264

Query: 295 AHYFANGLEARLSGTRTPYFSPAF-ISKTSVADVLKAYIVYISASPFRKASNFLTNRMIG 353
           A YFA  LEAR++G  +P  S  F  S TS+ D+LKAY +++   P      F  N+ I 
Sbjct: 265 AFYFAEALEARITGNISPPVSNPFPSSTTSMVDILKAYKLFVHTCPIYVTDYFAANKSIY 324

Query: 354 KTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEET 413
           +   KATK+HI+DFG+ YGFQWPC ++  S RPGGPP +R+TGIELP+ GFRP++RVEET
Sbjct: 325 ELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEET 384

Query: 414 GHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDS 473
           G RLK+  ++ NVPFE++ IA+KWETI LD+L I+  E TVV C++RL Y PD+T   DS
Sbjct: 385 GRRLKRFCDQFNVPFEFNFIAKKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLDS 444

Query: 474 LRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQ-- 531
            RD VL+L + INPDLFV    NG YNSPFF++RF+EA+FH+S+LFDM + T+  ED+  
Sbjct: 445 PRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYK 504

Query: 532 GRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKM 591
            R + ERE+  R AM+V++CEG ER   PETY+QW+ R LRAGF+   + +++++  K++
Sbjct: 505 NRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEI 564

Query: 592 VKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKPVQDSQN 632
           V+  YH+DF +D +  WMLQGWKG+++YA S WKP +   N
Sbjct: 565 VRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPAEKFTN 605
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2 Back     alignment and function description
>sp|Q9SNB8|SCL30_ARATH Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1 Back     alignment and function description
>sp|O80933|SCL9_ARATH Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1 Back     alignment and function description
>sp|P0C884|SCL34_ARATH Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1 Back     alignment and function description
>sp|P0C883|SCL33_ARATH Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1 Back     alignment and function description
>sp|Q3EDH0|SCL31_ARATH Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=3 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
255586180688 transcription factor, putative [Ricinus 0.971 0.892 0.528 0.0
224106447656 GRAS family transcription factor [Populu 0.925 0.891 0.509 0.0
255586184662 Chitin-inducible gibberellin-responsive 0.976 0.932 0.497 0.0
302399055684 SCL domain class transcription factor [M 0.966 0.893 0.487 1e-179
224059474652 GRAS family transcription factor [Populu 0.912 0.884 0.510 1e-178
255586178663 Chitin-inducible gibberellin-responsive 0.985 0.939 0.490 1e-174
302399039672 SCL domain class transcription factor [M 0.981 0.922 0.489 1e-173
224059472712 GRAS family transcription factor [Populu 0.764 0.678 0.590 1e-172
225434903658 PREDICTED: scarecrow-like protein 14 [Vi 0.933 0.896 0.473 1e-167
356544570687 PREDICTED: scarecrow-like protein 9-like 0.958 0.882 0.482 1e-167
>gi|255586180|ref|XP_002533749.1| transcription factor, putative [Ricinus communis] gi|223526337|gb|EEF28636.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/692 (52%), Positives = 456/692 (65%), Gaps = 78/692 (11%)

Query: 1   MNGFEFGRGSIRACSN------HESDHSAMNEFMDHPTDHHLSINS-APS-LASSSDGAS 52
           MN F+F  G I   SN      +E +H+  N   + P    LS NS AP+ L  SS  +S
Sbjct: 12  MNRFKFDHGPISFPSNRNLLNGYELNHNLSNPISNLP---FLSFNSQAPNDLTQSSPSSS 68

Query: 53  RYNFENVNFSYAVFKYINDILMEEDVASNTCMLQDCLALQATEKSFYDVLGQQYPPS--- 109
             +  N N   AV KYI+D+LMEED+   TCMLQDCLALQA EKS YDVLGQ+YP S   
Sbjct: 69  EGHDPNNN---AVLKYISDMLMEEDLEGKTCMLQDCLALQAAEKSLYDVLGQEYPHSLSH 125

Query: 110 --------------------PNQYSHCFNPNGNSPDDDIDSSSSIDNNNSC--------- 140
                                N Y    N +   P   +D   ++D  ++          
Sbjct: 126 CPQIVGSPDDNSLWSSSFDRRNCYPGAVNSSVEKPSWTLDQIHNLDLYSTLTGPDFHSVR 185

Query: 141 ----DATN-----------------NASDEEVRHYSLKGSRGRKIHQIDDRDFLDEG--R 177
               DA+                    SD+E   YS   SRGRK HQ +D D+L+E   R
Sbjct: 186 QGIGDASKFFSDGDPLVVAPNSSSPTCSDKEESDYSPSSSRGRKNHQREDSDYLEEEEER 245

Query: 178 SNKQLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLFEAARNRAARNLPCDKTKIKGSNS 237
           SNK     L E+ + +MF EV++   G ++S  C   + +RN A+         +KGSN 
Sbjct: 246 SNKHSALSLAESEQSEMFDEVLLCPSGKHESETCAFQDKSRNGAS---------LKGSNG 296

Query: 238 RILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHY 297
           R  R  RQ N  EVVDLS+LL QCAQ+ + +D R A EL +QIRQHSSP GDG QRLAHY
Sbjct: 297 RTARGRRQGNKGEVVDLSTLLAQCAQSVSISDHRTATELLRQIRQHSSPYGDGNQRLAHY 356

Query: 298 FANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTE 357
           FAN LE RL+GT TP +SP   SKT V+D+LKAY VY+ A PF++ SNF  N+ I K  E
Sbjct: 357 FANALETRLAGTGTPAYSPLLSSKTPVSDILKAYQVYVKACPFKRMSNFFANQTIFKLAE 416

Query: 358 KATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRL 417
           KAT++HIIDFG+ YGFQWPC IQR S RPGGPPK+RITGIELP+PGFRPAERVEETG RL
Sbjct: 417 KATRLHIIDFGVLYGFQWPCLIQRLSQRPGGPPKLRITGIELPQPGFRPAERVEETGRRL 476

Query: 418 KKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDA 477
           ++  ER NVPF+Y A+AQKWETIK +DL IDR E+TVV C+YRL  LPDDT V +S RDA
Sbjct: 477 QRYCERFNVPFKYHAVAQKWETIKYEDLNIDRGEMTVVNCLYRLRNLPDDTVVANSARDA 536

Query: 478 VLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYE 537
           VL+LI++I PD+F+HGV NGTYN+PFFV+RF+EA+F++SALFDM E  VP ED  R++YE
Sbjct: 537 VLKLIRKIRPDIFIHGVINGTYNAPFFVTRFREALFYYSALFDMFEINVPREDDQRMLYE 596

Query: 538 REVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYH 597
           + +FGR  MNV+ACEG ER++ PETY+QWQ RNLRAGFRQL +DQE+L++V+  V+ +YH
Sbjct: 597 KAIFGRDIMNVIACEGAERVERPETYKQWQVRNLRAGFRQLSLDQEILKKVRCTVRSEYH 656

Query: 598 KDFDVDENGQWMLQGWKGKILYALSFWKPVQD 629
           KDF VDENG+WMLQGWKG+++ ALS WKPVQD
Sbjct: 657 KDFVVDENGRWMLQGWKGRVISALSVWKPVQD 688

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224106447|ref|XP_002314169.1| GRAS family transcription factor [Populus trichocarpa] gi|222850577|gb|EEE88124.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586184|ref|XP_002533751.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223526339|gb|EEF28638.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302399055|gb|ADL36822.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|224059474|ref|XP_002299864.1| GRAS family transcription factor [Populus trichocarpa] gi|222847122|gb|EEE84669.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586178|ref|XP_002533748.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223526336|gb|EEF28635.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302399039|gb|ADL36814.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|224059472|ref|XP_002299863.1| GRAS family transcription factor [Populus trichocarpa] gi|222847121|gb|EEE84668.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225434903|ref|XP_002280780.1| PREDICTED: scarecrow-like protein 14 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544570|ref|XP_003540722.1| PREDICTED: scarecrow-like protein 9-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.729 0.599 0.510 1.5e-140
TAIR|locus:2040701718 AT2G37650 [Arabidopsis thalian 0.734 0.646 0.495 2.9e-131
TAIR|locus:2075155583 AT3G46600 [Arabidopsis thalian 0.625 0.677 0.546 3.8e-127
TAIR|locus:2148293610 AT5G59450 [Arabidopsis thalian 0.731 0.757 0.478 7.9e-117
TAIR|locus:2025032695 AT1G07520 "AT1G07520" [Arabido 0.708 0.644 0.443 7.2e-107
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.583 0.618 0.319 5.2e-49
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.588 0.759 0.294 1.8e-48
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.594 0.634 0.309 2.6e-47
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.574 0.878 0.293 8.1e-44
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.596 0.737 0.295 8.4e-42
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1238 (440.9 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
 Identities = 240/470 (51%), Positives = 335/470 (71%)

Query:   161 GRKIHQID-DRDFLDEGRSNKQLVPLLEEAVRCDMFVEVMIPKGGSYDSVQCPLF--EAA 217
             G+K H  D D DF++E RSNKQ    +EE+   +MF ++++   G    +    F  E+A
Sbjct:   302 GKKSHWRDEDEDFVEE-RSNKQSAVYVEESELSEMFDKILVCGPGKPVCILNQNFPTESA 360

Query:   218 RNRAARNLPCDKTKIKGSNSRILRMMRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELS 277
             +   A++   +  KI+G  S        D+  E  DL +LL  CAQA + +D+R A E+ 
Sbjct:   361 KVVTAQS---NGAKIRGKKSTSTSHSN-DSKKETADLRTLLVLCAQAVSVDDRRTANEML 416

Query:   278 KQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTSVADVLKAYIVYISA 337
             +QIR+HSSP G+G++RLAHYFAN LEARL+GT T  ++     KTS AD+LKAY  Y+S 
Sbjct:   417 RQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYMSV 476

Query:   338 SPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSF-RPGGPPKIRITG 396
              PF+KA+    N  + + T  A  +HIIDFGISYGFQWP  I R S  RPGG PK+RITG
Sbjct:   477 CPFKKAAIIFANHSMMRFTANANTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITG 536

Query:   397 IELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVT 456
             IELP+ GFRPAE V+ETGHRL +  +R NVPFEY+AIAQKWETI+++DLK+ + E  VV 
Sbjct:   537 IELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIQVEDLKLRQGEYVVVN 596

Query:   457 CMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFS 516
              ++R   L D+T + +S RDAVL+LI++INP++F+  + +G YN+PFFV+RF+EA+FH+S
Sbjct:   597 SLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYS 656

Query:   517 ALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFR 576
             A+FDM ++ +  ED+ RL+YE+E +GR  +NV+ACEG ER++ PETY+QWQ+R +RAGFR
Sbjct:   657 AVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFR 716

Query:   577 QLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWKP 626
             QLP+++EL++ +K  ++  Y K+FDVD+NG W+LQGWKG+I+YA S W P
Sbjct:   717 QLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWKGRIVYASSLWVP 766
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0009410 "response to xenobiotic stimulus" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2040701 AT2G37650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075155 AT3G46600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025032 AT1G07520 "AT1G07520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LTI5SCL11_ARATHNo assigned EC number0.43360.93030.9639yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GRAS21
GRAS family transcription factor (538 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-135
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  400 bits (1031), Expect = e-135
 Identities = 146/376 (38%), Positives = 224/376 (59%), Gaps = 8/376 (2%)

Query: 254 LSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPY 313
           L  LL  CA+A +S D  +A  +  ++ Q +SP GD  QRLA YF   L ARL+ + +  
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 314 FSPAFISKTS---VADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGIS 370
           +S    S ++     +VL AY ++   SP+ K  +F  N+ I +  E   +VHIIDF I 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 371 YGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEY 430
            G QWP  IQ  + RPGGPP +RITGI  P+  F  AE +EETG RL + A+   VPFE+
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQ--FSSAEELEETGDRLAQFADSLGVPFEF 178

Query: 431 SA-IAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDL 489
           +  +A++ E + L+ L +   E   V C++ L+ L D++   +S     LRL+K +NP +
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLES--PTFLRLVKSLNPKV 236

Query: 490 FVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVL 549
                    +NS  F++RF EA+ ++SALFD LEAT+P + + R   ERE+ GR  +NV+
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 550 ACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWM 609
           ACEG ER++  ET+ +W+ R  RAGFR +P+ +  +++ K ++++ Y   + V+E+   +
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSL 356

Query: 610 LQGWKGKILYALSFWK 625
           + GWKG+ L A S W+
Sbjct: 357 VLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.06
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.98
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.8
PLN02233261 ubiquinone biosynthesis methyltransferase 94.63
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 94.28
PRK06202232 hypothetical protein; Provisional 94.11
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 93.92
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 92.83
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 92.03
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.75
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 90.38
PRK08317241 hypothetical protein; Provisional 88.4
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 86.98
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 86.1
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 86.07
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 86.01
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 85.72
COG2227243 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- 82.07
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 81.9
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 81.83
PLN02336475 phosphoethanolamine N-methyltransferase 81.42
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 81.34
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 81.33
PRK11207197 tellurite resistance protein TehB; Provisional 80.7
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=3e-112  Score=910.09  Aligned_cols=370  Identities=42%  Similarity=0.714  Sum_probs=357.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCC---hHHHHHH
Q 039114          254 LSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTS---VADVLKA  330 (632)
Q Consensus       254 L~~LLl~CAqAVa~~d~~~A~~lL~~I~q~sSp~Gd~~QRLA~yFaeAL~aRL~gtg~~~y~~l~s~~~s---~~~~lkA  330 (632)
                      |++||++||+||++||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+.....+   ..+.+.|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999877554443   6789999


Q ss_pred             HHHHHhcCcchhhhHHHhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHH
Q 039114          331 YIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERV  410 (632)
Q Consensus       331 y~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~l  410 (632)
                      |++|+++|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++  +.+.+
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l  158 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL  158 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887  67899


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEee-cccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCE
Q 039114          411 EETGHRLKKAAERCNVPFEYSAI-AQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDL  489 (632)
Q Consensus       411 eeTGrRL~~fA~~~gVpFeF~~I-a~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~V  489 (632)
                      ++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||.+++....+||+.||+.||+|+|+|
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            99999999999999999999996 58999999999999999999999999999999998888889999999999999999


Q ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhHhHhhhhhccCCCccCCccchhhHHHH
Q 039114          490 FVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSR  569 (632)
Q Consensus       490 fv~~e~n~~~nsp~F~~RF~EAL~yYsAlFDsLda~~pr~~~eR~~iEr~~~greI~NvVAcEG~eRvER~E~~~qWq~R  569 (632)
                      ||++|++++||+|+|++||.|||+||+|+|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccccCCHHHHHHHHHHHhhcCCCCcEEEecCCEEEEEECCceeEEEeeee
Q 039114          570 NLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWK  625 (632)
Q Consensus       570 ~~rAGF~~lpLs~~~~~qak~ll~~~y~~~f~v~ed~~~LlLgWKgr~L~a~SaW~  625 (632)
                      |.+|||+++||++.++.|||.+|+.++++||.|+++++||+|||||+||+++|+||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            99999999999999999999999976668999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 85/570 (14%), Positives = 156/570 (27%), Gaps = 166/570 (29%)

Query: 69  INDILMEEDVASNTCMLQDCLALQATE--KSFY-DVLGQQYPPSPNQYSHCFNPNGNSPD 125
           I+ I+M +D  S T  L   L  +  E  + F  +VL   Y    +              
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK----------T 100

Query: 126 DDIDSSSSIDNNNSC-DATNNASDEEVRHYSLKGSRGRKIHQIDDRDFLDEGRSNKQLVP 184
           +    S          D   N  ++    Y++  SR +   ++  R  L E R  K ++ 
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNV--SRLQPYLKL--RQALLELRPAKNVL- 154

Query: 185 LLEEAVRCDMFVEVMIPKGGSYDSVQCPL-FEAARNRAARNLPCDKTKIKGSNSRILRM- 242
                      ++ +    GS  +    +  +                    + +I  + 
Sbjct: 155 -----------IDGV---LGSGKTW---VALDVCL---------SYKVQCKMDFKIFWLN 188

Query: 243 MRQDNTSEVVDLSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGL 302
           ++  N+ E V L  L     Q   +   R   + S  I+            L     +  
Sbjct: 189 LKNCNSPETV-LEMLQKLLYQIDPNWTSR--SDHSSNIKLRIH---SIQAELRRLLKSKP 242

Query: 303 EAR----LSGTRTPYFSPAF-IS-KT-------SVADVLKAYIV-YISASPFRKA----- 343
                  L   +      AF +S K         V D L A    +IS            
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 344 -----SNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIE 398
                  +L  R       +    +                         P ++ I    
Sbjct: 303 VKSLLLKYLDCR-PQDLPREVLTTN-------------------------PRRLSIIAES 336

Query: 399 LPEPGFRPAERVEETGH-RLKKAAERC-NV--PFEYSAIAQKWETIKLDDLKIDRDEVTV 454
           + +      +  +     +L    E   NV  P EY  +         D L +      +
Sbjct: 337 IRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKM--------FDRLSVFPPSAHI 387

Query: 455 ---VTCMYRLNYLPDDTQ-VKDSLRDAVLRLIKRINPD--LFVHGVANGTYNSPFFVSRF 508
              +  +   + +  D   V + L      L+++   +  + +  +        +   + 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPSI--------YLELKV 437

Query: 509 K---EAMFHFSAL--------FDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERI 557
           K   E   H S +        FD  +   P  DQ    Y     G H         L+ I
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----YFYSHIGHH---------LKNI 484

Query: 558 DNPETYRQWQSRNLRAGFRQLPVDQELLRR 587
           ++PE             FR + +D   L +
Sbjct: 485 EHPERM---------TLFRMVFLDFRFLEQ 505

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.2
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.31
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.24
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.59
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.46
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.28
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 94.9
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.8
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.53
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.39
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.88
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.86
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.78
3f4k_A257 Putative methyltransferase; structural genomics, P 92.72
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 92.2
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 92.13
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.11
2r3s_A335 Uncharacterized protein; methyltransferase domain, 92.1
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 92.1
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 91.86
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 91.71
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 91.06
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 90.39
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 90.17
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 89.55
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 89.46
3hnr_A220 Probable methyltransferase BT9727_4108; structural 89.24
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 88.68
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 88.58
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 88.14
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 87.8
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 87.69
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 87.25
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 87.04
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 86.51
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 85.68
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 85.01
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 83.96
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 83.63
3ocj_A305 Putative exported protein; structural genomics, PS 83.63
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 83.52
3lcc_A235 Putative methyl chloride transferase; halide methy 83.19
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 83.1
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 82.84
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 82.41
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 82.21
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 81.06
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 81.03
3gu3_A284 Methyltransferase; alpha-beta protein, structural 80.7
3m70_A286 Tellurite resistance protein TEHB homolog; structu 80.46
3i9f_A170 Putative type 11 methyltransferase; structural gen 80.21
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.20  E-value=0.002  Score=64.92  Aligned_cols=107  Identities=19%  Similarity=0.262  Sum_probs=63.5

Q ss_pred             eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeeccccccc
Q 039114          361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETI  440 (632)
Q Consensus       361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l  440 (632)
                      .-+|+|+|.|.|.    +...|+.+- ++|..+|||||..      .+.|+.+.+++.++.  ...+++|..  ...+++
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s------~~ml~~A~~~~~~~~--~~~~v~~~~--~D~~~~  135 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNS------PAMIERCRRHIDAYK--APTPVDVIE--GDIRDI  135 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESC------HHHHHHHHHHHHTSC--CSSCEEEEE--SCTTTC
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECC------HHHHHHHHHHHHhhc--cCceEEEee--cccccc
Confidence            3579999999993    445566442 4467899999973      355777766665432  223445432  233333


Q ss_pred             CcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCE-EEEEee
Q 039114          441 KLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDL-FVHGVA  495 (632)
Q Consensus       441 ~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~V-fv~~e~  495 (632)
                           ...+  .=+|-|.+.|||+.++      -|..+|+.| |.|+|.- |++.+.
T Consensus       136 -----~~~~--~d~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          136 -----AIEN--ASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             -----CCCS--EEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----cccc--cccceeeeeeeecCch------hHhHHHHHHHHHcCCCcEEEEEec
Confidence                 2222  2234455678888642      256788877 5589986 445544
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.08
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.71
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.44
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.42
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.23
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.22
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.52
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 94.18
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 94.02
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 93.87
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 92.92
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.81
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 91.63
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 90.84
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 90.68
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 90.25
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 87.14
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 86.97
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 84.17
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 80.18
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.08  E-value=0.0084  Score=55.72  Aligned_cols=108  Identities=19%  Similarity=0.335  Sum_probs=64.6

Q ss_pred             CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccc
Q 039114          360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWET  439 (632)
Q Consensus       360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~  439 (632)
                      +.-||+|+|-|.|    .+...|+.. -..|..+|||||..      .+.++.+.+++.    ..+....++.+..... 
T Consensus        39 ~~~~vLDlGCGtG----~~~~~l~~~-~~~~~~~v~giD~S------~~ml~~A~~~~~----~~~~~~~~~~~~~d~~-  102 (225)
T d1im8a_          39 ADSNVYDLGCSRG----AATLSARRN-INQPNVKIIGIDNS------QPMVERCRQHIA----AYHSEIPVEILCNDIR-  102 (225)
T ss_dssp             TTCEEEEESCTTC----HHHHHHHHT-CCCSSCEEEEECSC------HHHHHHHHHHHH----TSCCSSCEEEECSCTT-
T ss_pred             CCCEEEEeccchh----hHHHHHHHh-hcCCCCceEEeCCC------HHHHHHHHHHhH----hhcccchhhhccchhh-
Confidence            3458999999998    333445533 23467999999973      455666665664    3333333333332221 


Q ss_pred             cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCE-EEEEee
Q 039114          440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDL-FVHGVA  495 (632)
Q Consensus       440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~V-fv~~e~  495 (632)
                            ....+..-+|.|.+.|||+..+.      +..+|+.| |.|+|.- |++.+.
T Consensus       103 ------~~~~~~~d~i~~~~~l~~~~~~d------~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         103 ------HVEIKNASMVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             ------TCCCCSEEEEEEESCGGGSCGGG------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------ccccccceeeEEeeeccccChhh------HHHHHHHHHHhCCCCceeecccc
Confidence                  22234455677888899886431      34677777 6689997 455443
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure