Citrus Sinensis ID: 039138

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTSSGTG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHccEEEEEccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEccccc
Coil and Loop (DISEMBL)
mkddeslpttttlnvtkkessdssafgkgRYKFWALAAILLLAFWSMFTGTVTLRWSAgnlnrlsddlgspihddldvLEMEEREKVVKHMWDVytnsrrirlPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRslvnidsppfhstsahqFSKSLKLAERGRALLTSSGTG
Flexible Loop (DISEMBL)
mkddeslpttttlnvtkkessdssafgkGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNrlsddlgspihDDLDVLEMEEREKVVKHMwdvytnsrrirlPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRAlltssgtg
Low Complexity Region (SEG)
MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWalaailllaFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTSSGTG
Disordered region (IsUnstruct)
*************************FGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVN**********************************
Disordered Region (DISOPRED)
**************************GKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVN**********************************
Disordered Region (DISEMBL)
**********TTLN***********FGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTSSGTG
Disordered Region (DISPRO)
*************************FGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHST*************RG**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTSSGTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
255561142	382	sugar transporter, putative [Ricinus com	0.983	0.455	0.752	2e-65
356496751	331	PREDICTED: putative polyol transporter 2	0.920	0.492	0.785	6e-65
357483369	171	hypothetical protein MTR_5g019900 [Medic	0.949	0.982	0.789	1e-64
356540751	373	PREDICTED: probable polyol transporter 6	0.943	0.447	0.771	2e-64
255646709	168	unknown [Glycine max]	0.926	0.976	0.779	1e-63
388509002	176	unknown [Lotus japonicus]	0.937	0.943	0.775	2e-62
118483265	171	unknown [Populus trichocarpa]	0.960	0.994	0.728	2e-61
224094739	162	predicted protein [Populus trichocarpa]	0.915	1.0	0.768	3e-61
224134354	171	predicted protein [Populus trichocarpa]	0.966	1.0	0.739	6e-61
297735178	178	unnamed protein product [Vitis vinifera]	0.994	0.988	0.700	4e-60

>gi|255561142|ref|XP_002521583.1| sugar transporter, putative [Ricinus communis] gi|223539261|gb|EEF40854.1| sugar transporter, putative [Ricinus communis]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 153/182 (84%), Gaps = 8/182 (4%)

Query: 3   DDESLPTTTTLNVT-------KKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLR 55
           DD+SLPT+T    T       KKESSDSS FGKGRYKFWALAAILLLAFWSMFTGTVTLR
Sbjct: 201 DDDSLPTSTIAATTTTSATNSKKESSDSSVFGKGRYKFWALAAILLLAFWSMFTGTVTLR 260

Query: 56  WSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAY 115
           WSAGNLNRLSDD+ +PIHDDLDVLEMEERE+VVKHMWDVYTNS RIRLPRFWQEAFEAAY
Sbjct: 261 WSAGNLNRLSDDIDAPIHDDLDVLEMEERERVVKHMWDVYTNSHRIRLPRFWQEAFEAAY 320

Query: 116 EELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTSSG 175
           E+L+SDV  ++DAAI+EIAKMSVRS++ +D PP  STSA + SKSLKL  +  A  TS G
Sbjct: 321 EDLTSDVPGIKDAAISEIAKMSVRSII-LDPPPVQSTSARELSKSLKLVGKDGAARTSKG 379

Query: 176 TG 177
           +G
Sbjct: 380 SG 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496751|ref|XP_003517229.1| PREDICTED: putative polyol transporter 2-like [Glycine max]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 132/168 (78%), Positives = 147/168 (87%), Gaps = 5/168 (2%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MKD++ LPTT     TKKES DSS FGKGRYKFWALAAILLLAFWSMFTGTV+LRWS G 
Sbjct: 165 MKDEDGLPTTAA---TKKESMDSSLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWS-GT 220

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN LS D+ +PIHDDLDVLEMEEREKVV+HMWDVYTNSRR+RLPRFWQEAFEAAYE+L+S
Sbjct: 221 LNSLSSDIDTPIHDDLDVLEMEEREKVVRHMWDVYTNSRRVRLPRFWQEAFEAAYEDLTS 280

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGR 168
           DV EVRDAA+TEIAKMSVRS ++ D PP  STSA +FSKSLK AE+G+
Sbjct: 281 DVTEVRDAAVTEIAKMSVRS-IHFDPPPLQSTSAREFSKSLKQAEKGK 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483369|ref|XP_003611971.1| hypothetical protein MTR_5g019900 [Medicago truncatula] gi|358344391|ref|XP_003636273.1| hypothetical protein MTR_036s0057 [Medicago truncatula] gi|355502208|gb|AES83411.1| hypothetical protein MTR_036s0057 [Medicago truncatula] gi|355513306|gb|AES94929.1| hypothetical protein MTR_5g019900 [Medicago truncatula] gi|388512483|gb|AFK44303.1| unknown [Medicago truncatula]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/171 (78%), Positives = 146/171 (85%), Gaps = 3/171 (1%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MKDD+ LPTTT   + KKE+ DS  FGKGRYKFWALAAILLLAFWSMFTGTV+LRWS GN
Sbjct: 1   MKDDDGLPTTTAA-INKKENMDSGLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWS-GN 58

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN LS DL +PIHDDLDVLEMEEREKVV+HMWDVYTNSRRIRLPRFWQEAFEAAYEEL+S
Sbjct: 59  LNTLSSDLDTPIHDDLDVLEMEEREKVVRHMWDVYTNSRRIRLPRFWQEAFEAAYEELTS 118

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALL 171
           DV  VRD AITEIAKMSVRS VN D PP  ST A +FSKSLK AE+G+  +
Sbjct: 119 DVPGVRDDAITEIAKMSVRS-VNYDPPPIQSTRAQEFSKSLKQAEKGKEAM 168

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540751|ref|XP_003538848.1| PREDICTED: probable polyol transporter 6-like [Glycine max]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/171 (77%), Positives = 149/171 (87%), Gaps = 4/171 (2%)

Query: 3   DDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLN 62
           D++ LPTTT   VTKKE+ DSS FGKGRYKFWALAAILLLAFWSMFTGTV+LRWS G LN
Sbjct: 204 DEDGLPTTTA--VTKKENLDSSLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWS-GTLN 260

Query: 63  RLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDV 122
            LS+D+ +PIHDDLDVLEMEEREKVV+HMWDVYTNSR +RLPRFWQEAFEAAYE+L+SDV
Sbjct: 261 SLSNDIDTPIHDDLDVLEMEEREKVVRHMWDVYTNSRSVRLPRFWQEAFEAAYEDLTSDV 320

Query: 123 AEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTS 173
           AEVRDAA+ EIAKMSVRS ++ D PP  STSA +FSKSLK AE+G+   TS
Sbjct: 321 AEVRDAAVAEIAKMSVRS-IHFDPPPLQSTSAREFSKSLKQAEKGKDATTS 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646709|gb|ACU23828.1| unknown [Glycine max]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 148/168 (88%), Gaps = 4/168 (2%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MKD++ LPTTT   VTKKE+ DSS FGKGRYKFWALAAILLLAFWSMFTGTV+LRWS G 
Sbjct: 1   MKDEDGLPTTTA--VTKKENLDSSLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWS-GT 57

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN LS+D+ +PIHDDLDVLEMEEREKVV+HMWDVYTNSR +RLPRFWQEAFEAAYE+L+ 
Sbjct: 58  LNSLSNDIDTPIHDDLDVLEMEEREKVVRHMWDVYTNSRSVRLPRFWQEAFEAAYEDLTG 117

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGR 168
           DVAEVRDAA+ EIAKMSVRS ++ D PP  STSA +FSKSLK AE+G+
Sbjct: 118 DVAEVRDAAVAEIAKMSVRS-IHFDPPPLQSTSAREFSKSLKQAEKGK 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509002|gb|AFK42567.1| unknown [Lotus japonicus]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 144/169 (85%), Gaps = 3/169 (1%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MKDD+ LPTTT     KK++ DS  FGKGRYKFWALAAILLLAFWSMFTGTV+LRWS GN
Sbjct: 1   MKDDDGLPTTTA-PTAKKDNLDSGLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWS-GN 58

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN LS+DL +PIHDDLDVLEMEEREKVV+HMWDVYTNSRRIRLPRFWQEAFEAAYEEL+S
Sbjct: 59  LNSLSNDLDTPIHDDLDVLEMEEREKVVRHMWDVYTNSRRIRLPRFWQEAFEAAYEELTS 118

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRA 169
           D   VRDAAITEIAKMSVRS ++ D PP  ST A +FSKSLK  E+ R+
Sbjct: 119 DAPGVRDAAITEIAKMSVRS-IDFDPPPIQSTRAQEFSKSLKQVEKERS 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483265|gb|ABK93535.1| unknown [Populus trichocarpa]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/177 (72%), Positives = 149/177 (84%), Gaps = 7/177 (3%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MKDD+SLPTTT  +V KKE+SDS  FGKGRYKFWALAAILLLAFWSM TGTVTLRWSAGN
Sbjct: 1   MKDDDSLPTTTAPSV-KKETSDSVLFGKGRYKFWALAAILLLAFWSMLTGTVTLRWSAGN 59

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN L DD+ +PI DDLDVLEME+REKVVKHMWD+YTNSRRIRLP+FWQEAFEAAYEEL+S
Sbjct: 60  LNSLVDDIDTPIRDDLDVLEMEDREKVVKHMWDIYTNSRRIRLPKFWQEAFEAAYEELTS 119

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTSSGTG 177
           D ++V++AAI EIAKMS+RS +++D  P  ST A + SKSLKLA      + S G+G
Sbjct: 120 DASDVKEAAIAEIAKMSIRS-IDLDPLPVQSTRARELSKSLKLAA-----VASKGSG 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094739|ref|XP_002310215.1| predicted protein [Populus trichocarpa] gi|222853118|gb|EEE90665.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 144/164 (87%), Gaps = 2/164 (1%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MKDD+SLPTTT  +V KKE+SDS  FGKGRYKFWALAAILLLAFWSM TGTVTLRWSAGN
Sbjct: 1   MKDDDSLPTTTAPSV-KKETSDSVLFGKGRYKFWALAAILLLAFWSMLTGTVTLRWSAGN 59

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN L DD+ +PI DDLDVLEME+REKVVKHMWD+YTNSRRIRLP+FWQEAFEAAYEEL+S
Sbjct: 60  LNSLVDDIDTPIRDDLDVLEMEDREKVVKHMWDIYTNSRRIRLPKFWQEAFEAAYEELTS 119

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLA 164
           D ++V++AAI EIAKMS+RS +++D  P  ST A + SKSLKLA
Sbjct: 120 DASDVKEAAIAEIAKMSIRS-IDLDPLPVQSTRARELSKSLKLA 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134354|ref|XP_002327817.1| predicted protein [Populus trichocarpa] gi|222836902|gb|EEE75295.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 146/173 (84%), Gaps = 2/173 (1%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MK D SLPTTT   V KKE+SDS  FGK RYKFWALAAILLLAFWSMFTGTVTLRWSAGN
Sbjct: 1   MKVDVSLPTTTAPTV-KKETSDSGLFGKVRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 59

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN L+DD+ +PI DD DVLEMEEREK VKHMWD+YTNSRRIRLP+FWQEAFEAAYEEL+S
Sbjct: 60  LNSLADDIDTPIRDDRDVLEMEEREKAVKHMWDIYTNSRRIRLPKFWQEAFEAAYEELTS 119

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTS 173
           D  +V++AAITEIAKMS+RS +++D  P  ST A + SKSLK+AE+  A +TS
Sbjct: 120 DAPDVKEAAITEIAKMSIRS-IDLDPLPVQSTRARELSKSLKVAEKDGAAMTS 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735178|emb|CBI17540.3| unnamed protein product [Vitis vinifera]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 144/177 (81%), Gaps = 1/177 (0%)

Query: 1   MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60
           MKDD+SLPTT      KK+SSD+S FG+GRYKFWALAAILLLAFWSMFTGTVTLRWSAGN
Sbjct: 1   MKDDDSLPTTAPTTNAKKDSSDASVFGRGRYKFWALAAILLLAFWSMFTGTVTLRWSAGN 60

Query: 61  LNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSS 120
           LN +SDDL S IHDDLDVLEMEEREKVVKHMWDVYTNSRR RLPRFWQEAFEAAYE+L++
Sbjct: 61  LNHISDDLDSHIHDDLDVLEMEEREKVVKHMWDVYTNSRRSRLPRFWQEAFEAAYEDLTN 120

Query: 121 DVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRALLTSSGTG 177
           D   VR+ AI+EI +MSVR+ +++D P   ST + +  KSLK + +    +TSSG  
Sbjct: 121 DDPGVREDAISEIVRMSVRN-IDLDPPLIQSTVSQELGKSLKQSTKDMVAVTSSGNN 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2155735	185	AT5G65650 "AT5G65650" [Arabido	0.949	0.908	0.660	3.6e-57
TAIR|locus:2115225	179	AT4G36660 "AT4G36660" [Arabido	0.909	0.899	0.670	1.6e-54
TAIR|locus:2016372	147	AT1G19380 "AT1G19380" [Arabido	0.779	0.938	0.469	1.2e-24

TAIR|locus:2155735 AT5G65650 "AT5G65650" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 115/174 (66%), Positives = 136/174 (78%)

Query:     1 MKDDESLPTTTT----LNVT-KKESSDSSAFGKGRYKFWXXXXXXXXXFWSMFTGTVTLR 55
             MKD +SLP +T+      VT KKE+  S+ F KGRYKFW         FWSM TGTV LR
Sbjct:     1 MKDGDSLPISTSSVAATTVTGKKETGYSALFSKGRYKFWALAAILLLAFWSMLTGTVNLR 60

Query:    56 WSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAY 115
             WSAGN+N  +DDL  PIH+DLDVLEMEEREKVVKHMWDVY N RRIRLPRFWQEAFEAAY
Sbjct:    61 WSAGNINHFTDDLVFPIHEDLDVLEMEEREKVVKHMWDVYNNGRRIRLPRFWQEAFEAAY 120

Query:   116 EELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLKLAERGRA 169
             EEL+SDV +V +AAI+EIA+MS+RS+V ID PP HST+  + +K+LKLA++GRA
Sbjct:   121 EELTSDVPDVVEAAISEIARMSIRSIV-IDPPPLHSTNVRELTKTLKLADKGRA 173

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115225 AT4G36660 "AT4G36660" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 114/170 (67%), Positives = 129/170 (75%)

Query:     1 MKDDESLPTTTTLNV--------TKKESSDSSAFGKGRYKFWXXXXXXXXXFWSMFTGTV 52
             MK+D++LPTTTT           +KKESSDS  FG+GRYKFW         FWSMFTGTV
Sbjct:     1 MKEDDALPTTTTTGTATGTAMANSKKESSDSVLFGRGRYKFWAFAAILLLAFWSMFTGTV 60

Query:    53 TLRWSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFE 112
             TLR S GNLNRLS+DLG P +D+LDVLEMEEREKVVKHMWDVYTNSRRI+LPRFWQEAF 
Sbjct:    61 TLRLSTGNLNRLSEDLGIPNYDNLDVLEMEEREKVVKHMWDVYTNSRRIKLPRFWQEAFV 120

Query:   113 AAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHSTSAHQFSKSLK 162
             AAYEEL+SDV  VR+AAI EIAKMS RS + +D PP  S SA    ++LK
Sbjct:   121 AAYEELTSDVPGVREAAIGEIAKMSARS-ITLDPPPSRSMSARDLGRNLK 169

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2016372 AT1G19380 "AT1G19380" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 69/147 (46%), Positives = 90/147 (61%)

Query:     1 MKDDESLPTTTTLNVTKKESSDSSAFGKGRYKFWXXXXXXXXXFWSMFTGTVTLRWSAGN 60
             MK DES    T L V K  + +    G   YK W         F SM TG+V+L+   G 
Sbjct:     1 MKFDES---KTLLPVRKPVNGNRKTAG---YKLWVLIAVLLLAFGSMLTGSVSLK-GIG- 52

Query:    61 LNRLSDDLGS-PIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELS 119
             L   +D + +    DDLDVLE+EEREKVV+ MWDVY  S  +++PRFW+EAFEAAYE L 
Sbjct:    53 LFHSADGVNAFSFGDDLDVLEIEEREKVVRQMWDVYGRSGGVKVPRFWREAFEAAYEFLI 112

Query:   120 SDVAEVRDAAITEIAKMSVRSLVNIDS 146
             SD A VR+AA+++IAK+S+   V  +S
Sbjct:   113 SDSAAVRNAAVSDIAKLSLVRFVKSES 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       168   0.00079  108 3  11 23  0.42    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.44u 0.20s 16.64t   Elapsed:  00:00:00
  Total cpu time:  16.44u 0.20s 16.64t   Elapsed:  00:00:00
  Start:  Fri May 10 10:48:43 2013   End:  Fri May 10 10:48:43 2013

GO:0008150 "biological_process" evidence=ND

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
pfam06708	156	pfam06708, DUF1195, Protein of unknown function (D	8e-86

>gnl|CDD|191590 pfam06708, DUF1195, Protein of unknown function (DUF1195)

 Score =  249 bits (636), Expect = 8e-86
 Identities = 114/157 (72%), Positives = 133/157 (84%), Gaps = 6/157 (3%)

Query: 1   MKDDESLPTTTTLNVT-----KKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLR 55
           MKDD+S  +T +         KKE++ S+ FGKGRYKFWALAAILLLAFWSMFTG+VTLR
Sbjct: 1   MKDDDSPISTPSPATKITMNSKKETAGSALFGKGRYKFWALAAILLLAFWSMFTGSVTLR 60

Query: 56  WSAGNLNRLSDDLGSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAY 115
           WSAGNLNR SDDL  P+HDDLDVLEMEEREK+V+HMWDVYT S R+RLPRFWQEAFEAAY
Sbjct: 61  WSAGNLNRASDDLDFPLHDDLDVLEMEEREKLVRHMWDVYTRSGRVRLPRFWQEAFEAAY 120

Query: 116 EELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHST 152
           EEL+SDV +VR+AA++EIAKMSVRS+  ++ PP HST
Sbjct: 121 EELASDVPQVREAAVSEIAKMSVRSIE-LEPPPLHST 156

This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PF06708	157	DUF1195: Protein of unknown function (DUF1195); In	100.0
TIGR02574	63	stabl_TIGR02574 putative addiction module componen	83.07

>PF06708 DUF1195: Protein of unknown function (DUF1195); InterPro: IPR010608 This family consists of several plant specific hypothetical proteins of around 160 residues in length

Probab=100.00  E-value=1.5e-93  Score=574.14  Aligned_cols=151  Identities=81%  Similarity=1.275  Sum_probs=148.1

Q ss_pred             CCCCCCCCccccc------ccccccCCCccccCCchhHHHHHHHHHHHHHHhhhhceEEEEeccCCcccccCCCCCCCCC
Q 039138            1 MKDDESLPTTTTL------NVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDLGSPIHD   74 (177)
Q Consensus         1 Mkddd~lp~st~t------~~~kkes~~~~l~GkgrYKfWaLaAIlLLAfWSMftgsVtLrwSag~Ln~~s~dld~p~~d   74 (177)
                      |||+|++|++|++      .++|+++++++|||||||||||||||+|||||||||||||||||+||||++++|+|+|++|
T Consensus         1 mk~~~~~~~~t~~~at~~~~~~~~~~~~~~l~gKgrYK~WaLaAIlLLAfWSM~tgsvtLrwS~g~l~~~~~dl~~~~~d   80 (157)
T PF06708_consen    1 MKDDDSLPTSTPTPATTTTASSKKESSESALFGKGRYKFWALAAILLLAFWSMFTGSVTLRWSAGNLNSVSDDLDFPIHD   80 (157)
T ss_pred             CCccccCCcCCCCCcccceeeecccccccccccCchhHHHHHHHHHHHHHHHHhheeeEEEeccCcccccccccCCcccc
Confidence            9999999988885      4889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHhHhhhhhcCCCCcCcchHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhhhhccccCCCCCCCcc
Q 039138           75 DLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEVRDAAITEIAKMSVRSLVNIDSPPFHST  152 (177)
Q Consensus        75 DlDvLEmEeREKvVr~MWDvYt~s~~vrLprFWqEAFeAAYeeL~sD~~~vrdaAisEIAkmS~r~li~~dp~p~~S~  152 (177)
                      |||||||||||||||||||||||++++|||||||||||||||+|+||+|+|||||||||||||+|+ |++||||.||+
T Consensus        81 DlDvLEmEeREKvVr~MWDvYt~s~~vrLPrFWqEAFeAAYe~L~sD~~~VrdaAisEIAkmS~r~-~~~~~~~~~st  157 (157)
T PF06708_consen   81 DLDVLEMEEREKVVRHMWDVYTRSRRVRLPRFWQEAFEAAYEELASDVPQVRDAAISEIAKMSVRS-IELDPPPNQST  157 (157)
T ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCCccCchHHHHHHHHHHHHHhccCcchhHHHHHHHHHHhhcc-ccCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999 99999999986

The function of this family is unknown.

>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family

Probab=83.07  E-value=3.5  Score=28.11  Aligned_cols=44  Identities=18%  Similarity=0.414  Sum_probs=37.8

Q ss_pred             hhHHHHHHHHhHhhhhhcC-CCCcCcchHHHHHHHHHHHHhhcch
Q 039138           79 LEMEEREKVVKHMWDVYTN-SRRIRLPRFWQEAFEAAYEELSSDV  122 (177)
Q Consensus        79 LEmEeREKvVr~MWDvYt~-s~~vrLprFWqEAFeAAYeeL~sD~  122 (177)
                      |..+||-.||.+.||=-.+ ...+.+|.-|++-.+.-++++.++-
T Consensus         3 L~~~ERl~Lve~LwdSL~~~~~~~~~~~~~~~el~~R~~~~~~g~   47 (63)
T TIGR02574         3 LSPDERIQLVEDIWDSIAAEAKHLILTEAQKAELDRRLADYKADP   47 (63)
T ss_pred             CCHHHHHHHHHHHHHHhccCcccCCCCHHHHHHHHHHHHHHHcCC
Confidence            5678999999999999985 5789999999999998888776653

Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 26/202 (12%), Positives = 46/202 (22%), Gaps = 57/202 (28%)

Query: 12  TLNVTKKESSDSSAFGKGRYKFWALAAILLLAFWSMFTGTVTLRWSAGNLNRLSDDL--- 68
            L +T +    +               I L       T           L+    DL   
Sbjct: 268 IL-LTTRFKQVTDFLSAATTT-----HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 69  ---GSPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELSSDVAEV 125
               +P    +    + +        WD   N + +   +      E++   L     E 
Sbjct: 322 VLTTNPRRLSIIAESIRDG----LATWD---NWKHVNCDKL-TTIIESSLNVLEPA--EY 371

Query: 126 R-----------DAAITE------------------IAKMSVRSLVNIDSPPFHSTSAH- 155
           R            A I                    + K+   SLV        + S   
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPS 430

Query: 156 -QFSKSLKLAERG---RALLTS 173
                 +KL       R+++  
Sbjct: 431 IYLELKVKLENEYALHRSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00