Citrus Sinensis ID: 039154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mamvdeplypiavltdelknddiQLRLNSIRRLSTIARAlgeertpkelipflsanndddDEVLLAMAEELGVFipyvggvehahvllppletlctveeTCMRDKAVESLCRIGsqmresdlvdwFIPLVKRLAAGEWFTARVSACGLfhiaypsapdILKTELRSIYTQLcqddmpmvRRSAASNLRKFAAtvepahlktDIMSIFEDLT
Flexible Loop (DISEMBL)
mamvdeplYPIAVLtdelknddiqlRLNSIRRLSTIaralgeertpkelipflsaNNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAtvepahlktdiMSIFEDLT
Low Complexity Region (SEG)
MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT
Disordered region (IsUnstruct)
*******LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGE****KELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR*****NLRKFAATVEPAHLKTDIM*******
Disordered Region (DISOPRED)
****DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT
Disordered Region (DISEMBL)
MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT
Disordered Region (DISPRO)
*****EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	0.966	0.347	0.900	1e-109
Q38951	587	Serine/threonine-protein	no	no	0.966	0.347	0.857	1e-103
Q38845	588	Serine/threonine-protein	no	no	0.995	0.357	0.805	1e-98
P30153	589	Serine/threonine-protein	yes	no	0.971	0.348	0.592	8e-65
Q32PI5	589	Serine/threonine-protein	yes	no	0.971	0.348	0.592	8e-65
P54612	589	Serine/threonine-protein	yes	no	0.971	0.348	0.592	9e-65
Q76MZ3	589	Serine/threonine-protein	yes	no	0.971	0.348	0.592	9e-65
Q4QQT4	601	Serine/threonine-protein	no	no	0.909	0.319	0.587	3e-63
P54613	602	Serine/threonine-protein	no	no	0.909	0.318	0.582	7e-63
P30154	601	Serine/threonine-protein	no	no	0.895	0.314	0.586	1e-62

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/211 (90%), Positives = 203/211 (96%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+M+DEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETC+R+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD FI LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           R+AA+NL KFAATVE AHLKTD+MS+FEDLT
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLT 211

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/211 (85%), Positives = 197/211 (93%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+MVDEPLYPIAVL DELKNDDIQ RLNSI+RLS IARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETC+R+KAV+SLCRIG+QMRES
Sbjct: 61  DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ F PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           R+AA+NL KFAAT+E AHLKTDIMS+FEDLT
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFEDLT 211

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score =  358 bits (919), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/211 (80%), Positives = 192/211 (90%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           MAMVDEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS N+DDD
Sbjct: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETC+R+KAVESLC+IGSQM+E+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ F+PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct: 121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           R+AASNL KFA TVE   L  +IM++F+DLT
Sbjct: 181 RAAASNLGKFATTVESTFLIAEIMTMFDDLT 211

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  246 bits (628), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  246 bits (628), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  246 bits (628), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  246 bits (628), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/206 (58%), Positives = 154/206 (74%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 19  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET +RDKAVESL +I  +     L  
Sbjct: 79  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E   +KT+I+ +F +L
Sbjct: 199 SKLGEFAKVLELDSVKTEIVPLFTNL 224

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  239 bits (611), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 120/206 (58%), Positives = 154/206 (74%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 20  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 79

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET +RDKAVESL +I  +     L  
Sbjct: 80  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 139

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 140 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 199

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E   +K++I+ +F +L
Sbjct: 200 SKLGEFAKVLELDSVKSEIVPLFTNL 225

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|P30154|2AAB_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Homo sapiens GN=PPP2R1B PE=1 SV=3

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 151/203 (74%)

Query: 8   LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAM 67
           LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVLLA+
Sbjct: 22  LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 81

Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFI 127
           AE+LG F   VGG + AH LLPPLE L TVEET +RDKAVESL +I  +     L  +F+
Sbjct: 82  AEQLGNFTGLVGGPDFAHCLLPPLENLATVEETVVRDKAVESLRQISQEHTPVALEAYFV 141

Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AAS L
Sbjct: 142 PLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQQFRSLCSDDTPMVRRAAASKL 201

Query: 188 RKFAATVEPAHLKTDIMSIFEDL 210
            +FA  +E   +K++I+ +F  L
Sbjct: 202 GEFAKVLELDSVKSEIVPLFTSL 224

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
255576493	587	serine/threonine protein phosphatase 2a	0.966	0.347	0.952	1e-114
449434642	587	PREDICTED: serine/threonine-protein phos	0.966	0.347	0.943	1e-113
353259711	587	serine/threonine protein phosphatase 2a	0.966	0.347	0.933	1e-111
224101693	586	predicted protein [Populus trichocarpa]	0.966	0.348	0.928	1e-111
224108518	587	predicted protein [Populus trichocarpa]	0.995	0.357	0.905	1e-109
225455902	587	PREDICTED: serine/threonine-protein phos	0.966	0.347	0.909	1e-108
15230896	587	protein phosphatase 2A subunit A2 [Arabi	0.966	0.347	0.900	1e-107
683502	587	protein phosphatase 2A 65 kDa regulatory	0.966	0.347	0.900	1e-107
219888447	587	unknown [Zea mays]	0.966	0.347	0.890	1e-107
297734191	642	unnamed protein product [Vitis vinifera]	0.966	0.317	0.909	1e-107

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/211 (95%), Positives = 205/211 (97%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+ VDEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSTVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC+RDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD+LK ELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDVLKAELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           RSAASNL KFAATVEPAHLKTDIMSIFEDLT
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/211 (94%), Positives = 206/211 (97%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+MVDEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC+RDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP++LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           RSAA+NL KFAAT+EPAHLKTDIM+IFEDLT
Sbjct: 181 RSAATNLGKFAATIEPAHLKTDIMTIFEDLT 211

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/211 (93%), Positives = 203/211 (96%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+MVDEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGE+RT KELIPFLS NNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEDRTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC+RDKAVESLCRIGSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREG 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV WFIPLVKRLAAGEWFTARVSACGLFHIAYPSA + LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVSWFIPLVKRLAAGEWFTARVSACGLFHIAYPSASETLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           RSAA+NL KFAATVEPAHLKTDIMSIFEDLT
Sbjct: 181 RSAATNLGKFAATVEPAHLKTDIMSIFEDLT 211

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101693|ref|XP_002312385.1| predicted protein [Populus trichocarpa] gi|222852205|gb|EEE89752.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/211 (92%), Positives = 205/211 (97%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+ V+EPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSTVEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGGV++AHVLLPPLETLCTVEETC+RDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGVDYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVEWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDTLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           RSAASNL KFAATVEPAHLKTDIMSIFEDLT
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108518|ref|XP_002314877.1| predicted protein [Populus trichocarpa] gi|118484366|gb|ABK94060.1| unknown [Populus trichocarpa] gi|222863917|gb|EEF01048.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/211 (90%), Positives = 203/211 (96%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+ ++EPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSTMEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLA+AEELGVFIPYVGGVE+AHVLLPPLETLCTVEETC+RDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLALAEELGVFIPYVGGVEYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDWFIPLVKRLAAGEWFT+RVSACGLFHIAYPSAP++LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTSRVSACGLFHIAYPSAPEMLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           RSAASNL KFAATVE  HLK DI+SIFEDLT
Sbjct: 181 RSAASNLGKFAATVESVHLKADILSIFEDLT 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/211 (90%), Positives = 202/211 (95%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           MAM+DEPLYPIAVL DELKN+DIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETC+RDKAVESLCRIG+QMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ FIPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 121 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           RSAASNL KFAATVE AHLK DIMSIFEDLT
Sbjct: 181 RSAASNLGKFAATVEAAHLKADIMSIFEDLT 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/211 (90%), Positives = 203/211 (96%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+M+DEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETC+R+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD FI LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           R+AA+NL KFAATVE AHLKTD+MS+FEDLT
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLT 211

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|683502|emb|CAA57528.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/211 (90%), Positives = 203/211 (96%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           M+M+DEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETC+R+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD FI LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           R+AA+NL KFAATVE AHLKTD+MS+FEDLT
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLT 211

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219888447|gb|ACL54598.1| unknown [Zea mays]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/211 (89%), Positives = 202/211 (95%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           MAM+DEPLYPIAVL DELKN+DIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDD+
Sbjct: 1   MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDE 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC+RDKAVESLCRIG+QM+E+
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMKET 120

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           D+VDWFIP+VKRLAAGEWFTARVS+CGLFHIAYPSA D LKTELR+IY QLCQDDMPMVR
Sbjct: 121 DIVDWFIPVVKRLAAGEWFTARVSSCGLFHIAYPSASDQLKTELRTIYGQLCQDDMPMVR 180

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           R+AASNL KFAATVE  HLKT+IMSIF+DLT
Sbjct: 181 RAAASNLGKFAATVEQNHLKTEIMSIFDDLT 211

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/211 (90%), Positives = 202/211 (95%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
           MAM+DEPLYPIAVL DELKN+DIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct: 56  MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 115

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETC+RDKAVESLCRIG+QMRE 
Sbjct: 116 DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 175

Query: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ FIPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 176 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 235

Query: 181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           RSAASNL KFAATVE AHLK DIMSIFEDLT
Sbjct: 236 RSAASNLGKFAATVEAAHLKADIMSIFEDLT 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	1.0	0.359	0.900	2.2e-98
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	1.0	0.359	0.857	7e-93
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	1.0	0.358	0.805	7.5e-89
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.976	0.349	0.592	8.1e-60
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.976	0.349	0.592	8.1e-60
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.976	0.349	0.592	8.1e-60
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.976	0.349	0.592	8.1e-60
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.976	0.349	0.592	8.1e-60
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.976	0.349	0.592	8.1e-60
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.976	0.349	0.592	8.1e-60

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 190/211 (90%), Positives = 203/211 (96%)

Query:     1 MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
             M+M+DEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS NNDDD
Sbjct:     1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETC+R+KAVESLCR+GSQMRES
Sbjct:    61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query:   121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLVD FI LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct:   121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query:   181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
             R+AA+NL KFAATVE AHLKTD+MS+FEDLT
Sbjct:   181 RAAATNLGKFAATVESAHLKTDVMSMFEDLT 211

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 181/211 (85%), Positives = 197/211 (93%)

Query:     1 MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
             M+MVDEPLYPIAVL DELKNDDIQ RLNSI+RLS IARALGEERT KELIPFLS NNDDD
Sbjct:     1 MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETC+R+KAV+SLCRIG+QMRES
Sbjct:    61 DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query:   121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ F PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct:   121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query:   181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
             R+AA+NL KFAAT+E AHLKTDIMS+FEDLT
Sbjct:   181 RAAATNLGKFAATIESAHLKTDIMSMFEDLT 211

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 170/211 (80%), Positives = 192/211 (90%)

Query:     1 MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDD 60
             MAMVDEPLYPIAVL DELKNDDIQLRLNSIRRLSTIARALGEERT KELIPFLS N+DDD
Sbjct:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETC+R+KAVESLC+IGSQM+E+
Sbjct:    61 DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query:   121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ F+PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct:   121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query:   181 RSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
             R+AASNL KFA TVE   L  +IM++F+DLT
Sbjct:   181 RAAASNLGKFATTVESTFLIAEIMTMFDDLT 211

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query:     5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
             D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
             S L +FA  +E  ++K++I+ +F +L
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query:     5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
             D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
             S L +FA  +E  ++K++I+ +F +L
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query:     5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
             D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
             S L +FA  +E  ++K++I+ +F +L
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query:     5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
             D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
             S L +FA  +E  ++K++I+ +F +L
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query:     5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
             D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
             S L +FA  +E  ++K++I+ +F +L
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query:     5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
             D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
             S L +FA  +E  ++K++I+ +F +L
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query:     5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
             D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
             S L +FA  +E  ++K++I+ +F +L
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38950	2AAB_ARATH	No assigned EC number	0.9004	0.9668	0.3475	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	99.91
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	99.82
PRK09687	280	putative lyase; Provisional	99.58
PRK09687	280	putative lyase; Provisional	99.57
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.3
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.26
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.2
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.09
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.07
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.04
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.97
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.96
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.95
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.92
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.91
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.79
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.78
KOG1243	690	consensus Protein kinase [General function predict	98.77
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.76
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.74
PTZ00429	746	beta-adaptin; Provisional	98.74
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.72
PTZ00429	746	beta-adaptin; Provisional	98.65
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.65
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.62
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.62
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.62
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.62
TIGR02270	410	conserved hypothetical protein. Members are found	98.6
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.58
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.55
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.55
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.53
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.49
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.48
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.48
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.48
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.47
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.46
TIGR02270	410	conserved hypothetical protein. Members are found	98.46
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.44
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.43
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.42
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.36
KOG1243	690	consensus Protein kinase [General function predict	98.36
KOG2956	516	consensus CLIP-associating protein [General functi	98.36
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.34
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.32
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.3
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.25
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.24
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.21
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.19
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.18
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.17
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.15
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.15
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.06
KOG2956	516	consensus CLIP-associating protein [General functi	98.04
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.01
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.97
PF05004	309	IFRD: Interferon-related developmental regulator (	97.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.92
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.91
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.91
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.9
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.89
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.87
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.87
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.84
KOG2025	892	consensus Chromosome condensation complex Condensi	97.83
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.82
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.82
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.8
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.79
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.73
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.62
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.59
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	97.58
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.56
PF05004	309	IFRD: Interferon-related developmental regulator (	97.51
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.48
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.44
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.4
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.39
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.31
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	97.28
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.25
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.23
KOG0567	289	consensus HEAT repeat-containing protein [General	97.23
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.2
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.18
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.17
KOG0567	289	consensus HEAT repeat-containing protein [General	97.17
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.11
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.1
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.08
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.07
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.03
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.0
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	96.99
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.97
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.94
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.86
KOG2025	892	consensus Chromosome condensation complex Condensi	96.85
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	96.73
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	96.68
KOG0413	1529	consensus Uncharacterized conserved protein relate	96.65
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.61
KOG1293	678	consensus Proteins containing armadillo/beta-caten	96.46
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.46
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	96.41
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	96.4
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.4
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.28
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	96.19
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	96.19
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.19
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.11
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.1
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	96.04
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.01
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.98
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.97
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.94
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.83
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.8
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.79
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.77
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	95.76
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.7
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.65
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.62
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	95.61
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.59
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.35
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.32
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.23
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	95.22
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	95.13
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.11
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	95.11
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.08
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.06
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	95.06
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	94.87
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	94.84
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.74
KOG2149	393	consensus Uncharacterized conserved protein [Funct	94.73
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.73
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	94.52
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	94.33
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	94.32
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.15
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.13
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	94.07
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.07
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	94.02
PF05804	708	KAP: Kinesin-associated protein (KAP)	93.97
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.94
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.86
KOG2149	393	consensus Uncharacterized conserved protein [Funct	93.74
PF05804	708	KAP: Kinesin-associated protein (KAP)	93.68
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.63
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	93.53
KOG2081	559	consensus Nuclear transport regulator [Intracellul	93.44
KOG0413	1529	consensus Uncharacterized conserved protein relate	93.34
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.16
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	93.03
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	93.01
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	92.99
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	92.64
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	92.55
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	92.47
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	92.42
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	92.25
COG5098	1128	Chromosome condensation complex Condensin, subunit	91.75
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.71
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	91.71
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	91.53
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	91.43
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	90.97
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	90.81
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.58
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	90.55
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	90.54
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.16
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	90.08
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.89
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.87
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	89.85
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	89.81
KOG2005	878	consensus 26S proteasome regulatory complex, subun	89.71
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	89.54
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	89.14
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	88.6
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	88.35
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	88.03
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.57
KOG1837	1621	consensus Uncharacterized conserved protein [Funct	87.56
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.53
KOG2549	576	consensus Transcription initiation factor TFIID, s	87.48
KOG1293	678	consensus Proteins containing armadillo/beta-caten	87.41
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	86.82
PF05536	543	Neurochondrin: Neurochondrin	86.59
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	86.34
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	86.14
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	85.8
KOG4413	524	consensus 26S proteasome regulatory complex, subun	85.66
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.52
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	85.37
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	85.08
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	85.05
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	84.87
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	84.27
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.14
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	84.02
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	83.92
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	83.87
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	83.76
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	83.25
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	83.06
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.92
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	82.78
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	82.56
KOG2081	559	consensus Nuclear transport regulator [Intracellul	82.38
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	82.06
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	81.9
KOG2973	353	consensus Uncharacterized conserved protein [Funct	81.75
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	81.74
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	80.85
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	80.85
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	80.74
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	80.39
PHA02861	149	uncharacterized protein; Provisional	80.26

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=99.91  E-value=7.1e-24  Score=191.65  Aligned_cols=205  Identities=57%  Similarity=0.891  Sum_probs=197.5

Q ss_pred             CcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccc
Q 039154            7 PLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (211)
Q Consensus         7 ~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~   86 (211)
                      ...|++.++++++.++.+.|.+....+..+|..+|.+.|+.+|+|++.++.+++.+|+.+++.++|++.+.+|++++...
T Consensus        80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~  159 (759)
T KOG0211|consen   80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHM  159 (759)
T ss_pred             ccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHH
Confidence            48899999999999999999999999999999999999999999999994499999999999999999999999999999


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELR  165 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~  165 (211)
                      ++|.++.++.+++..||+++++++.+++...+++....++.|.+.++..++|+.-|.++|.+|+..+..+.++ .+.++.
T Consensus       160 ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr  239 (759)
T KOG0211|consen  160 LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELR  239 (759)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988899999999999999999966 789999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhhC
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT  211 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L~  211 (211)
                      |.+.++|+|..|+||++++++++.+++.++.+...+.++|.+.+|.
T Consensus       240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~  285 (759)
T KOG0211|consen  240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLL  285 (759)
T ss_pred             HHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhh
Confidence            9999999999999999999999999999999999999999998773

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=99.82  E-value=4.5e-20  Score=167.17  Aligned_cols=192  Identities=21%  Similarity=0.240  Sum_probs=179.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccc
Q 039154           19 KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV   97 (211)
Q Consensus        19 ~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d   97 (211)
                      .+|-.+.|..+|+.++..+..+.....+.++.|.+.+ |+|++++||++++++++.+++.++.....+.++|.+.++..|
T Consensus       208 ~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D  287 (759)
T KOG0211|consen  208 TGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD  287 (759)
T ss_pred             chhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc
Confidence            3455677999999999988888878899999999999 999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCC
Q 039154           98 EETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDD  175 (211)
Q Consensus        98 ~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~  175 (211)
                      ++++||+.|++++..+.+.+..+ ...+.+.+.+.+..+|.+|++|++++..+..++..+|++ .+..+.+.+..+++|+
T Consensus       288 dqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~  367 (759)
T KOG0211|consen  288 DQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDE  367 (759)
T ss_pred             chhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcch
Confidence            99999999999999999999998 899999999999999999999999999999999999998 6788999999999999


Q ss_pred             CHHHHHHHHHhhHHHHhhhC----chhhHHHHHHHHHhh
Q 039154          176 MPMVRRSAASNLRKFAATVE----PAHLKTDIMSIFEDL  210 (211)
Q Consensus       176 ~~~VR~aaa~~l~~~~~~~~----~~~~~~~llp~~~~L  210 (211)
                      .++||.+++...+++...+.    ++.+.+.++|.+..|
T Consensus       368 ~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l  406 (759)
T KOG0211|consen  368 EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL  406 (759)
T ss_pred             hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence            99999999999999999999    778888889988765

>PRK09687 putative lyase; Provisional

Probab=99.58  E-value=4.6e-14  Score=116.32  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=61.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-ccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-HAHVL   87 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-~~~~l   87 (211)
                      .++.|++.|.++|..+|..++..|..+    |.    ...++.+.+ ++|+++.||..++..|+.+..    +. .....
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~----~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~----~~~~~~~a   91 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLR----GG----QDVFRLAIELCSSKNPIERDIGADILSQLGM----AKRCQDNV   91 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhc----Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CccchHHH
Confidence            356677777888888888887777643    43    334555555 677778888888888777543    11 12345


Q ss_pred             chHHhhh-ccchhhHHHHHHHHHHHHHHh
Q 039154           88 LPPLETL-CTVEETCMRDKAVESLCRIGS  115 (211)
Q Consensus        88 lp~l~~l-~~d~~~~VR~~a~~~l~~l~~  115 (211)
                      +|.|..+ .+|+++.||..|+.+|+.++.
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~  120 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCK  120 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence            5666554 667777788888877777653

>PRK09687 putative lyase; Provisional

Probab=99.57  E-value=1.2e-13  Score=113.76  Aligned_cols=161  Identities=15%  Similarity=0.067  Sum_probs=124.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-hhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-TPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      +..+...++|+|+.+|..++..|+.+    |... .....+|.+..  .+|+++.||..++..||.+..  +........
T Consensus        56 ~~~l~~ll~~~d~~vR~~A~~aLg~l----g~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~--~~~~~~~~a  129 (280)
T PRK09687         56 FRLAIELCSSKNPIERDIGADILSQL----GMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCK--KNPLYSPKI  129 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhc----CCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc--cccccchHH
Confidence            45566678999999999999999875    4322 23567788876  588999999999999999753  111112334


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  167 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~  167 (211)
                      +..+.....|+++.||..++.+|+.+..        ...+|.+..+.+|+.|.||..++..++.+..  +.   ....+.
T Consensus       130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~--~~---~~~~~~  196 (280)
T PRK09687        130 VEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY--DN---PDIREA  196 (280)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC--CC---HHHHHH
Confidence            5667777889999999999999976542        3466778888889999999999999998822  11   257788


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHH
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      ++++++|+.+.||+.|+..|+++
T Consensus       197 L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        197 FVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             HHHHhcCCChHHHHHHHHHHHcc
Confidence            89999999999999999999863

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.36  E-value=1.5e-11  Score=116.14  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=80.5

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA  135 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~  135 (211)
                      +.|++++||.++++.|+.+..    ..  ..-++.+..+++|+++.||.+|+.+|..+...       ..+.+.+....+
T Consensus       751 l~D~~~~VR~~aa~aL~~~~~----~~--~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~aL~  817 (897)
T PRK13800        751 ATDENREVRIAVAKGLATLGA----GG--APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAALR  817 (897)
T ss_pred             hcCCCHHHHHHHHHHHHHhcc----cc--chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHHhc
Confidence            455555666666665555432    11  11256677777888888888888888777543       223344666678


Q ss_pred             CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       136 d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      |+.|.||..++..++.+..       ..-.+.+..+++|+++.||++|+..|+.+
T Consensus       818 d~d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        818 ASAWQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             CCChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            8899999999999987642       13468888999999999999999999885

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.30  E-value=1.4e-11  Score=114.32  Aligned_cols=187  Identities=13%  Similarity=0.108  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc------cccccccchHHhhhc
Q 039154           23 IQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG------VEHAHVLLPPLETLC   95 (211)
Q Consensus        23 ~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~------~~~~~~llp~l~~l~   95 (211)
                      .+.|+.|+..|..++..+..|..-..++||+.. +.|....||.++.+.|-.+...+..      .-+-++|+|-|..|+
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~  516 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL  516 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence            566889999999999999999999999999999 9999999999999999877765542      345689999999999


Q ss_pred             cc-hhhHHHHHHHHHHHHHHhhcCh-------------------------------hHHHHhhHHHHHHhhcCCCchHHH
Q 039154           96 TV-EETCMRDKAVESLCRIGSQMRE-------------------------------SDLVDWFIPLVKRLAAGEWFTARV  143 (211)
Q Consensus        96 ~d-~~~~VR~~a~~~l~~l~~~l~~-------------------------------~~~~~~l~p~i~~l~~d~~~~vR~  143 (211)
                      .| ....||.+-+.+++.++.....                               ..+.+.+-..+..|..|+.--||.
T Consensus       517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr  596 (1431)
T KOG1240|consen  517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR  596 (1431)
T ss_pred             ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            99 6778999999999988876310                               123345667778899999999999


Q ss_pred             hHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154          144 SACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED  209 (211)
Q Consensus       144 ~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~  209 (211)
                      +..+.+..+|-.+|++ .-+-+++.+...++|.+|..|.+...++..++-.+|+-.+.+.|+|++..
T Consensus       597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q  663 (1431)
T KOG1240|consen  597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ  663 (1431)
T ss_pred             HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence            9999999999999998 56789999999999999999999999999999999998889999999853

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.26  E-value=8.5e-11  Score=111.02  Aligned_cols=59  Identities=25%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhcccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIP   76 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~   76 (211)
                      .++.|++.|+|+++.+|..|++.|..+    |+    ...+|.|.+ +.|+++.||.++++.|..+.+
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~----~~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~  681 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTET----TP----PGFGPALVAALGDGAAAVRRAAAEGLRELVE  681 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhh----cc----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            467889999999999999999998765    33    335666667 788889999999888877643

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.20  E-value=6.8e-10  Score=88.76  Aligned_cols=179  Identities=16%  Similarity=0.181  Sum_probs=129.3

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhh-------hhhh-cCCChHHHHHHHHHHHhccccccCcc--ccccc
Q 039154           17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-------FLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EHAHV   86 (211)
Q Consensus        17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p-------~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~~~~   86 (211)
                      .-.+.|=+.|..++..|..+...-.+......+.+       .+.. +.|...-|-+.++..+..++..+|..  .....
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~   94 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI   94 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            34678899999999999998865523333333333       3334 66667778899999999999988764  23466


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---hH----
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DI----  159 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~---~~----  159 (211)
                      ++|.|...+.|....||.+|..+|..+++..+.  ....+.+.+....++.++.+|..++..+..+....+   ..    
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~  172 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY--SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS  172 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence            889999999999999999999999999999871  123457888889999999999999999999988888   22    


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                       ..+.+.+.+.++++|..++||.+|-..+..+.+.+|..
T Consensus       173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence             23679999999999999999999999999999998864

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2.6e-09  Score=99.29  Aligned_cols=179  Identities=14%  Similarity=0.117  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHH
Q 039154           26 RLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCM  102 (211)
Q Consensus        26 R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~V  102 (211)
                      -..|.+.++.+|..||+...--.++|.+.. ++..++.-|+++.-+|+.+++-.+.  ......|+|..-..++|.++.|
T Consensus       326 ~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprV  405 (1075)
T KOG2171|consen  326 YRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRV  405 (1075)
T ss_pred             HHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence            446889999999999998888888888989 9999999999999999999883332  2245667888889999999999


Q ss_pred             HHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChH----HHHHHHH-HHHHhcC
Q 039154          103 RDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI----LKTELRS-IYTQLCQ  173 (211)
Q Consensus       103 R~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~-~~~~L~~  173 (211)
                      |.+|.++++.+...+.++.-+   +.+.|.+...-.|. +.+|-.++|..+-.+.+...++    +.+.++. .|..|.+
T Consensus       406 r~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~  485 (1075)
T KOG2171|consen  406 RYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ  485 (1075)
T ss_pred             HHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999997543   44666666655554 4588888888888888877776    5667777 7777888


Q ss_pred             CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154          174 DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED  209 (211)
Q Consensus       174 D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~  209 (211)
                      -+.+.||..+..+++.++...+.     +++|||+.
T Consensus       486 ~~~~~v~e~vvtaIasvA~AA~~-----~F~pY~d~  516 (1075)
T KOG2171|consen  486 SSKPYVQEQAVTAIASVADAAQE-----KFIPYFDR  516 (1075)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhh-----hhHhHHHH
Confidence            88899999999999999987665     55566554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=9.5e-09  Score=95.65  Aligned_cols=196  Identities=16%  Similarity=0.151  Sum_probs=156.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHA   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~   84 (211)
                      .+.+-.-+.|.+...|-+++..|+.++.=.+.-  ..-..++|++.. ++|..|.||.+++.++|++...+++   +.+.
T Consensus       350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~  429 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH  429 (1075)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence            445556689999999999999998886422211  133456777778 9999999999999999999998875   4566


Q ss_pred             cccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHHHHhhHH----HHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           85 HVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDLVDWFIP----LVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        85 ~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~~~~l~p----~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      +.++|.|.....+.+ ..|...|+.++..+.+..+.+.+..++-+    .+..|-+.+.-.||..+...++.++...+..
T Consensus       430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~  509 (1075)
T KOG2171|consen  430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK  509 (1075)
T ss_pred             HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence            778888888888874 79999999999999999999988877544    4456777888899999999999999998887


Q ss_pred             ---HHHHHHHHHHHhcC----CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHH
Q 039154          160 ---LKTELRSIYTQLCQ----DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSI  206 (211)
Q Consensus       160 ---~~~~l~~~~~~L~~----D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~  206 (211)
                         +.+.++|.+.+.++    ++-..+|.....++.-++..+|++.+...--++
T Consensus       510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~el  563 (1075)
T KOG2171|consen  510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEEL  563 (1075)
T ss_pred             hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHH
Confidence               56777777776655    344888999999999999999988665544333

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=2.9e-09  Score=94.33  Aligned_cols=198  Identities=18%  Similarity=0.194  Sum_probs=146.4

Q ss_pred             HHHHHHH----hcCCCHHHHHHHHHHHHHHHHHhCCcchhh---chhhhhhh-cCCChHHHHHHHHHHHhccccccCccc
Q 039154           11 IAVLTDE----LKNDDIQLRLNSIRRLSTIARALGEERTPK---ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE   82 (211)
Q Consensus        11 l~~l~~~----l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~---~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~   82 (211)
                      |+.+++.    ..++++++|...|+.+.-+-... +++...   -++.|..+ .+|.+++|-..|++=+..+++.--.++
T Consensus       213 iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~  291 (885)
T KOG2023|consen  213 IDKFLEILFALANDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKE  291 (885)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHH
Confidence            4455554    46888999999999997664322 222222   23455556 889999999999999988887311000


Q ss_pred             ----cccccchHHhh----------hcc-ch---------------------------------------------hhHH
Q 039154           83 ----HAHVLLPPLET----------LCT-VE---------------------------------------------ETCM  102 (211)
Q Consensus        83 ----~~~~llp~l~~----------l~~-d~---------------------------------------------~~~V  102 (211)
                          +...|+|+|.+          |++ ++                                             +|..
T Consensus       292 ~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNL  371 (885)
T KOG2023|consen  292 VLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNL  371 (885)
T ss_pred             HHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccH
Confidence                11222333221          222 11                                             1667


Q ss_pred             HHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHH
Q 039154          103 RDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMV  179 (211)
Q Consensus       103 R~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~V  179 (211)
                      |.-.+.+|.-++..++.+- -.+++|+++.....+.|.||.+..-.+++++++.-+-   +...++|.+++++.|..|-|
T Consensus       372 RkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV  450 (885)
T KOG2023|consen  372 RKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV  450 (885)
T ss_pred             hhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence            8888888888888887654 6789999999999999999999999999999886554   56789999999999999999


Q ss_pred             HHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154          180 RRSAASNLRKFAATVEPAHLKTDIMSIFEDL  210 (211)
Q Consensus       180 R~aaa~~l~~~~~~~~~~~~~~~llp~~~~L  210 (211)
                      |+..+=.|..+++.+-.+...+.+.|++..|
T Consensus       451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~l  481 (885)
T KOG2023|consen  451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGL  481 (885)
T ss_pred             eeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence            9999999999999998877778888887654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.97  E-value=5.7e-09  Score=72.44  Aligned_cols=82  Identities=18%  Similarity=0.157  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC
Q 039154          102 MRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM  176 (211)
Q Consensus       102 VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~  176 (211)
                      -|..++-+|..++-.++..  ...+.++|.+....+|+.|+||+++|+.+..++...+.+   +..++++.+.+++.|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3788888888888888775  456778999999999999999999999999999888877   56788888899999999


Q ss_pred             HHHHHHH
Q 039154          177 PMVRRSA  183 (211)
Q Consensus       177 ~~VR~aa  183 (211)
                      +.||.+|
T Consensus        82 ~~Vr~~a   88 (97)
T PF12755_consen   82 ENVRSAA   88 (97)
T ss_pred             hhHHHHH
Confidence            9999987

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=2.1e-08  Score=88.23  Aligned_cols=197  Identities=17%  Similarity=0.189  Sum_probs=159.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc--cccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~ll   88 (211)
                      +..++...-|..+.+|..|......+-+.+.....+.-+.|.+..+.+..+.=..++.+-+|.++.....  +.+...++
T Consensus       218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~ii  297 (569)
T KOG1242|consen  218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLI  297 (569)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhh
Confidence            5667777778889999999999999999999888876666666665555777777888888876663321  44667889


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH--------------------------------------HHhhHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDL--------------------------------------VDWFIPLV  130 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~--------------------------------------~~~l~p~i  130 (211)
                      |.+.+-+.|..+.||+++.+++.+++...+..++                                      -..++|.+
T Consensus       298 P~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL  377 (569)
T KOG1242|consen  298 PVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPIL  377 (569)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHH
Confidence            9999999999999999999999999988644322                                      23478888


Q ss_pred             HHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHH
Q 039154          131 KRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS  205 (211)
Q Consensus       131 ~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp  205 (211)
                      .+-..+.+...++.++..+..++..+..+     +...|+|-+..-..|..|+||..+++.|+.+.+-+|...+ ..++|
T Consensus       378 ~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p  456 (569)
T KOG1242|consen  378 KRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIP  456 (569)
T ss_pred             HHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-ccccc
Confidence            88888888888899999999999988443     6788999999999999999999999999999999987665 66666


Q ss_pred             HHH
Q 039154          206 IFE  208 (211)
Q Consensus       206 ~~~  208 (211)
                      .+.
T Consensus       457 ~l~  459 (569)
T KOG1242|consen  457 ELS  459 (569)
T ss_pred             HHH
Confidence            654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.95  E-value=6.9e-09  Score=96.83  Aligned_cols=181  Identities=14%  Similarity=0.084  Sum_probs=150.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhC---Cc---chhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccC-----
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALG---EE---RTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVG-----   79 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg---~~---~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig-----   79 (211)
                      -+.-.+.+....+|..|+..|.++-..+.   +.   ...++|+|-+.. ++| ....||.+-|.+|+.++...-     
T Consensus       466 Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~  545 (1431)
T KOG1240|consen  466 YFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL  545 (1431)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH
Confidence            34556778889999999877766654332   22   377899999999 888 667799999999999988421     


Q ss_pred             -----------c-----------cc----cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh
Q 039154           80 -----------G-----------VE----HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL  133 (211)
Q Consensus        80 -----------~-----------~~----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l  133 (211)
                                 .           ++    ..+.+-.....|+.|+++-||.+-++++..+|..||.+...+.+++.+...
T Consensus       546 ~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf  625 (1431)
T KOG1240|consen  546 TQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF  625 (1431)
T ss_pred             HHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Confidence                       0           01    112233456679999999999999999999999999999999999999999


Q ss_pred             hcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          134 AAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       134 ~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .+|..|+.|.+.-..+..++-.+|.. ..+.++|++.+-+.|.++.|=..|..++.-+++.
T Consensus       626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~  686 (1431)
T KOG1240|consen  626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL  686 (1431)
T ss_pred             hcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999988 6789999999999999999999998888888775

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.92  E-value=2.3e-08  Score=89.10  Aligned_cols=176  Identities=21%  Similarity=0.178  Sum_probs=125.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      -++.+.+.++|+|+..|..|++.++.++    .....+.+.|.+.+ +.|++|.||+.|+..+..+.+. .++.....+.
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~  154 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDELI  154 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence            3778889999999999999999998765    55666888999999 8999999999999999998874 3333222278


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhH---HH---------------------------------------Hhh
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESD---LV---------------------------------------DWF  126 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~---~~---------------------------------------~~l  126 (211)
                      |.+..++.|.++.|+.+|+..+..+  ..+++.   ..                                       ..+
T Consensus       155 ~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~  232 (526)
T PF01602_consen  155 PKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRI  232 (526)
T ss_dssp             HHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHH
T ss_pred             HHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHH
Confidence            9999999999999999999999888  222221   11                                       123


Q ss_pred             HHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       127 ~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      ++.+..+..+.++.|+..++..+..+.+...  ....+.+.+.++++++++.||..+...+..++...
T Consensus       233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  233 IEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence            3333333334444455555555554433221  45667777778888888888888888777777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=2.6e-08  Score=88.42  Aligned_cols=185  Identities=17%  Similarity=0.182  Sum_probs=137.0

Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHHH---------------------------------H-hCCcchhhchhhhh
Q 039154            8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIAR---------------------------------A-LGEERTPKELIPFL   53 (211)
Q Consensus         8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~---------------------------------~-lg~~~~~~~L~p~l   53 (211)
                      +--+..++++-.|+|..+|.++...+...-.                                 . -+.....++..-|+
T Consensus        12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yi   91 (885)
T KOG2023|consen   12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYI   91 (885)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHH
Confidence            3446666666668888888888777664421                                 0 00011112222333


Q ss_pred             hh-----cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-------H
Q 039154           54 SA-----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-------D  121 (211)
Q Consensus        54 ~~-----~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-------~  121 (211)
                      .+     +.|.++.+|.+...-+..++. .|+-..+..++|.|.+++..++....+.|..+|.++++.....       .
T Consensus        92 Ks~~l~~lgd~~~lIr~tvGivITTI~s-~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r  170 (885)
T KOG2023|consen   92 KSECLHGLGDASPLIRATVGIVITTIAS-TGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR  170 (885)
T ss_pred             HHHHHhhccCchHHHHhhhhheeeeeec-ccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence            22     346666677666555555555 3455678899999999999999999999999999999885432       1


Q ss_pred             HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          122 LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       122 ~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      --+.++|.+.++.+.++...|..+..++..+...-.+.   .-++++..++.|.+|++|+||+..+.++.-+...
T Consensus       171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence            23679999999999999999999999999888877776   4688999999999999999999999999887764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.79  E-value=1.9e-07  Score=83.31  Aligned_cols=167  Identities=21%  Similarity=0.197  Sum_probs=116.0

Q ss_pred             HHHhcCC--CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154           15 TDELKND--DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (211)
Q Consensus        15 ~~~l~s~--~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l   91 (211)
                      .+-+++.  +...|..+++.+-- ...+|.+-  ..+.+-+.+ +..++.+.|+.+--.+..+...  .++..-.+.+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~l~kli~-~~~~G~~~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l~~n~l   84 (526)
T PF01602_consen   10 AKILNSFKIDISKKKEALKKLIY-LMMLGYDI--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLILIINSL   84 (526)
T ss_dssp             HHHHHCSSTHHHHHHHHHHHHHH-HHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHH-HHHcCCCC--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHHHHHHH
Confidence            3344444  77788888877744 45777643  366666666 6778888888776666665541  222233344556


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHh
Q 039154           92 ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL  171 (211)
Q Consensus        92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L  171 (211)
                      .+=++++++.+|..|+.++..++    ..+..+.+.|.+.++..|+++.||+.|+..+..++...+......+.+.+.++
T Consensus        85 ~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~l  160 (526)
T PF01602_consen   85 QKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQL  160 (526)
T ss_dssp             HHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHH
T ss_pred             HHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh
Confidence            56667778888988888888877    34555678888888888888889998888888887774443322278888888


Q ss_pred             cCCCCHHHHHHHHHhhHHH
Q 039154          172 CQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       172 ~~D~~~~VR~aaa~~l~~~  190 (211)
                      ++|+++.|+.+|+..+.++
T Consensus       161 L~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  161 LSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             TTHSSHHHHHHHHHHHHHH
T ss_pred             ccCCcchhHHHHHHHHHHH
Confidence            8988899998888888887

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=2.9e-07  Score=81.26  Aligned_cols=194  Identities=18%  Similarity=0.201  Sum_probs=146.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-hhhchhhhhhh-cCCChHH-HHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-TPKELIPFLSA-NNDDDDE-VLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~p~l~~-~~D~~~~-VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      +..+.+.+++.....|..+...+.-+.+-.|.+. ....++--+.+ .+|..+- .|..+.-++......+| .....++
T Consensus       136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyi  214 (569)
T KOG1242|consen  136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYI  214 (569)
T ss_pred             HHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchH
Confidence            3445555666777777777666665555555443 22333444455 6676544 44456666666666777 3445566


Q ss_pred             chHHhhh---ccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HH
Q 039154           88 LPPLETL---CTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LK  161 (211)
Q Consensus        88 lp~l~~l---~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~  161 (211)
                      +|++-.+   ..|....||.+|..+...+...++...++..+.+.+..+-++ .|+-+.++.+.++.+....+.+   +.
T Consensus       215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l  293 (569)
T KOG1242|consen  215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL  293 (569)
T ss_pred             HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence            6555444   457788999999999999999999999999999999988777 9999999999999998888877   67


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      .+++|...+-+.|..++||+++...+.+++..++-.. .+.++|.+
T Consensus       294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~L  338 (569)
T KOG1242|consen  294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTL  338 (569)
T ss_pred             hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHH
Confidence            8999999999999999999999999999999998554 45555654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.77  E-value=2.7e-08  Score=88.83  Aligned_cols=164  Identities=14%  Similarity=0.193  Sum_probs=143.8

Q ss_pred             hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH
Q 039154           45 TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV  123 (211)
Q Consensus        45 ~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~  123 (211)
                      ....++|.+.+ ..-.+.-||.-+.+++.++++++.++...+.|+|-+.....|.++.+|+.+++++..++.+++...+.
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln  406 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN  406 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence            34446666666 55666779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHH
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTD  202 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~  202 (211)
                      ..++.++.++..|+.-..|+...-+++++++.+.... ..-+...|.+-++|+-+--|.+....+......++...+...
T Consensus       407 ~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~k  486 (690)
T KOG1243|consen  407 GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANK  486 (690)
T ss_pred             HHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhh
Confidence            9999999999999999999999999999999887774 345667788888999988899999999999999998888888


Q ss_pred             HHHHHH
Q 039154          203 IMSIFE  208 (211)
Q Consensus       203 llp~~~  208 (211)
                      |+|.+.
T Consensus       487 Ilp~l~  492 (690)
T KOG1243|consen  487 ILPSLV  492 (690)
T ss_pred             cccccc
Confidence            888764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.76  E-value=2.1e-07  Score=78.56  Aligned_cols=159  Identities=26%  Similarity=0.355  Sum_probs=104.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      ++.+...+++.+..+|..+...+..+    |    ....+|.+.. +.|.++.||..++..|+.+    |.+..    .|
T Consensus        45 ~~~~~~~l~~~~~~vr~~aa~~l~~~----~----~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----~~~~a----~~  108 (335)
T COG1413          45 ADELLKLLEDEDLLVRLSAAVALGEL----G----SEEAVPLLRELLSDEDPRVRDAAADALGEL----GDPEA----VP  108 (335)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhh----c----hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----CChhH----HH
Confidence            67788889899999999888776543    2    2455777777 8899999999999988884    33332    23


Q ss_pred             HHhhhcc-chhhHHHHHHHHHHHHHHhhcC---------hhH--------------H------------HHhhHHHHHHh
Q 039154           90 PLETLCT-VEETCMRDKAVESLCRIGSQMR---------ESD--------------L------------VDWFIPLVKRL  133 (211)
Q Consensus        90 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~---------~~~--------------~------------~~~l~p~i~~l  133 (211)
                      .+..+++ |++..||..|+.+|..+...-.         .+.              .            .....+.+..+
T Consensus       109 ~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~  188 (335)
T COG1413         109 PLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIEL  188 (335)
T ss_pred             HHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence            3333333 8899999999999888866531         100              0            01134444555


Q ss_pred             hcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          134 AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       134 ~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      ..|....||..++..++.+....     ..+.+.|.+...|+.+.||..++..++.+
T Consensus       189 l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~  240 (335)
T COG1413         189 LEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI  240 (335)
T ss_pred             HhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence            55556666666666666554433     24566777777777777777777766543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.74  E-value=1.9e-06  Score=66.49  Aligned_cols=115  Identities=17%  Similarity=0.100  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhh
Q 039154           22 DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEET  100 (211)
Q Consensus        22 ~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~  100 (211)
                      |+.+|.+++-.++.++...+  ..-+..+|.+.. +.|+++.||+.+...|..+.. -|--.....++.-+..++.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~-~d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL-EDMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCceeehhhhhHHHHHHHcCCCH
Confidence            67899999999999987776  445677888888 999999999999999988776 23334455665666678899999


Q ss_pred             HHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCc
Q 039154          101 CMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWF  139 (211)
Q Consensus       101 ~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~  139 (211)
                      .||..|...+.++....+++.+.+.+.+.+..+.+...|
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~  116 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH  116 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence            999999999999999999999999999999999876544

>PTZ00429 beta-adaptin; Provisional

Probab=98.74  E-value=8.3e-07  Score=82.02  Aligned_cols=175  Identities=15%  Similarity=0.130  Sum_probs=139.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      .+..+.+.|+|.+...|..+++.+-. .-.+|.+  -..++|-+.+ ...++.++|+-+--.+...++.  .++..-..+
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa-~mt~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI  107 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIA-NMTMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV  107 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHH-HHHCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence            57888999999999999999988733 3467853  3578888888 7888999999998888776652  122233445


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI  167 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~  167 (211)
                      +.|.+=++|.++.||-.|+.+|..+.    ...+.+.+++.+++...|++.-||+.++-++.+++...+.- ....+.+.
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~  183 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD  183 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence            77888888999999999999887753    34567788888999999999999999999999998765543 23467888


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      +..|+.|+++.|...|...|.++...
T Consensus       184 L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        184 LVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            88899999999999999999888754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.72  E-value=4.6e-07  Score=81.63  Aligned_cols=197  Identities=18%  Similarity=0.221  Sum_probs=145.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHH-HHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDE-VLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~-VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      |-.++-..|+..+--|.++++.|..=|...|.+-.=+.++|++.+  +.|++.. +-+.+-.-|..+-...  .-..+.|
T Consensus       365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlv--rpYVhkI  442 (1172)
T KOG0213|consen  365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV--RPYVHKI  442 (1172)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccc--hhceeee
Confidence            445566677888999999999999999999999888999999988  6777654 3233333333332211  1234456


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcCh---------h------HH----------------HHhhHHHHHHhhcC
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRE---------S------DL----------------VDWFIPLVKRLAAG  136 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---------~------~~----------------~~~l~p~i~~l~~d  136 (211)
                      |-.+.-++-|++.-.|...-+.+.+++...|.         +      .+                -..++|+++..|++
T Consensus       443 LvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~S  522 (1172)
T KOG0213|consen  443 LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGS  522 (1172)
T ss_pred             EEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc
Confidence            66667777777777776554444444333221         1      11                13489999999999


Q ss_pred             C-CchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc---hhhHHHHHHHHHh
Q 039154          137 E-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP---AHLKTDIMSIFED  209 (211)
Q Consensus       137 ~-~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~---~~~~~~llp~~~~  209 (211)
                      . +|.-|..+.++...++..+|-.   +...++.+..+++.|+...||..+|.++..+++..+|   +.+-+-+-|+|+.
T Consensus       523 kkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg  602 (1172)
T KOG0213|consen  523 KKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG  602 (1172)
T ss_pred             ccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            8 9999999999999988888776   5678899999999999999999999999999999776   6666677787764

>PTZ00429 beta-adaptin; Provisional

Probab=98.65  E-value=1.8e-06  Score=79.87  Aligned_cols=182  Identities=15%  Similarity=0.125  Sum_probs=129.9

Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-cccc
Q 039154            9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-HAHV   86 (211)
Q Consensus         9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-~~~~   86 (211)
                      .-++.+.+.++|.|+.+|-.|++.++.|    .....-+.+++.+.+ +.|.+|.||++++-++..+-.. .++. ....
T Consensus       105 LaINtl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pelv~~~~  179 (746)
T PTZ00429        105 LAVNTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQLFYQQD  179 (746)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccccccccc
Confidence            4588999999999999999999988764    344555677778888 9999999999999999998763 2322 2345


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l  164 (211)
                      +++.+.+++.|.+..|...|+..|..+.+.-+..  ....++..++..+-+-..| -...+.+.+....+. ..+....+
T Consensus       180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW-~Qi~IL~lL~~y~P~-~~~e~~~i  257 (746)
T PTZ00429        180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEW-GQLYILELLAAQRPS-DKESAETL  257 (746)
T ss_pred             hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChH-HHHHHHHHHHhcCCC-CcHHHHHH
Confidence            7788889999999999999999999998765432  2233333333334333445 234445555332222 12234677


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          165 RSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      +......++...+.|--+|++.+-.+....+++
T Consensus       258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~  290 (746)
T PTZ00429        258 LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE  290 (746)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence            888888888899999999999988887665544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.65  E-value=1.4e-06  Score=73.54  Aligned_cols=160  Identities=21%  Similarity=0.209  Sum_probs=105.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhcccccc---------Cc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYV---------GG   80 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~i---------g~   80 (211)
                      -+..+.+.+.+.++.+|-.++..|+.    +|.+.....++.++..  |.+..||..++..|+.+...-         ..
T Consensus        75 av~~l~~~l~d~~~~vr~~a~~aLg~----~~~~~a~~~li~~l~~--d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~  148 (335)
T COG1413          75 AVPLLRELLSDEDPRVRDAAADALGE----LGDPEAVPPLVELLEN--DENEGVRAAAARALGKLGDERALDPLLEALQD  148 (335)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHc--CCcHhHHHHHHHHHHhcCchhhhHHHHHHhcc
Confidence            36677778888888888887775543    3444443333333332  778888888888887754311         00


Q ss_pred             cc--------------------------cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh
Q 039154           81 VE--------------------------HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA  134 (211)
Q Consensus        81 ~~--------------------------~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~  134 (211)
                      +.                          ......+.+..++.|+...||..|+.++..++...      ..+.+.+.+..
T Consensus       149 ~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~  222 (335)
T COG1413         149 EDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKAL  222 (335)
T ss_pred             chhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHh
Confidence            00                          01122344555555555555555555555555443      46778899999


Q ss_pred             cCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154          135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLR  188 (211)
Q Consensus       135 ~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~  188 (211)
                      +|++|.||..++..++.+...       .-.+.+...+.|.++.+|..++..++
T Consensus       223 ~~~~~~vr~~~~~~l~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         223 SDESLEVRKAALLALGEIGDE-------EAVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             cCCCHHHHHHHHHHhcccCcc-------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence            999999999999998876433       45677788899999999998888776

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.62  E-value=3e-07  Score=62.14  Aligned_cols=85  Identities=27%  Similarity=0.239  Sum_probs=65.1

Q ss_pred             hHHhhhc-cchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154           89 PPLETLC-TVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  167 (211)
Q Consensus        89 p~l~~l~-~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~  167 (211)
                      |.|.+.+ +|+++.||..|+..|.++.        ....+|.+.++.+|++|.||..++..++.+    |   ..+..+.
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~---~~~~~~~   66 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRI----G---DPEAIPA   66 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H---HHHTHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C---CHHHHHH
Confidence            4444544 8889999999999988442        235678888888999999999999999877    2   2467778


Q ss_pred             HHHhcCC-CCHHHHHHHHHhhH
Q 039154          168 YTQLCQD-DMPMVRRSAASNLR  188 (211)
Q Consensus       168 ~~~L~~D-~~~~VR~aaa~~l~  188 (211)
                      +.++++| +++.||.+|+.+|+
T Consensus        67 L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   67 LIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcHHHHHHHHhhcC
Confidence            8887766 45778999998875

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=2.4e-06  Score=77.44  Aligned_cols=170  Identities=17%  Similarity=0.207  Sum_probs=134.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~   90 (211)
                      +.++..|.|........|++++-.+   +....-.+.++|-+.+ ....+.+|++-+=-.|-..++.  .++..-.=+..
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~---iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt  112 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIAL---IAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT  112 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHH---HhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence            4567778788888888898877543   3455557899999999 8889999999998888887762  22222122456


Q ss_pred             HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHH
Q 039154           91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (211)
Q Consensus        91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~  170 (211)
                      |.+-++|.+..+|..|+..|..+    .-..+...++-.+++.+.|.+..||..+|..+++++..-.. .+..|......
T Consensus       113 fQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-~k~qL~e~I~~  187 (968)
T KOG1060|consen  113 FQKALKDPNQLIRASALRVLSSI----RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-QKDQLEEVIKK  187 (968)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-hHHHHHHHHHH
Confidence            89999999999999999888765    22334556677789999999999999999999999876444 45699999999


Q ss_pred             hcCCCCHHHHHHHHHhhHHHH
Q 039154          171 LCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       171 L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      |+.|.+|.|=-+|+.++.+++
T Consensus       188 LLaD~splVvgsAv~AF~evC  208 (968)
T KOG1060|consen  188 LLADRSPLVVGSAVMAFEEVC  208 (968)
T ss_pred             HhcCCCCcchhHHHHHHHHhc
Confidence            999999999999998886654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.62  E-value=3.2e-07  Score=62.03  Aligned_cols=85  Identities=34%  Similarity=0.440  Sum_probs=55.6

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      |+.+++.| ++.++.+|..++..++.    +|    ..+.+|.+.+ +.|+++.||..++..|+.+    |.    ....
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~----~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~----~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGE----LG----DPEAIPALIELLKDEDPMVRRAAARALGRI----GD----PEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHC----CT----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH----HHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHH----cC----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----HHHH
Confidence            45667777 77778888777777762    22    2356777777 7778888888888888875    32    2355


Q ss_pred             hHHhhhccch-hhHHHHHHHHHHH
Q 039154           89 PPLETLCTVE-ETCMRDKAVESLC  111 (211)
Q Consensus        89 p~l~~l~~d~-~~~VR~~a~~~l~  111 (211)
                      +.+.+++.++ +..||..|+.+|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            5666655544 4567777777764

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.62  E-value=2.2e-06  Score=79.39  Aligned_cols=191  Identities=14%  Similarity=0.071  Sum_probs=155.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhC--Ccchhhchh-hhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccc
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALG--EERTPKELI-PFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHV   86 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg--~~~~~~~L~-p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~   86 (211)
                      .+.+++.|.+-..|.+|+..+..+-..-+  .......++ .++.. ..|.+-.|-..++..|..++..++.  ..+...
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~  336 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN  336 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence            46778889999999999999888776555  333334444 44444 7899999999999999999998775  334556


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LK  161 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~  161 (211)
                      ++|.+-.-+.+....+|+.+.+++..+++.-+    ...+.+.+..+.++.+...|..|...+.......+..     ..
T Consensus       337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~  412 (815)
T KOG1820|consen  337 VFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV  412 (815)
T ss_pred             hcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence            77888888899999999999999999999433    3457778888899999999999988888887776622     57


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      ..+.|......+|.+..||.++...++.+.+++|.+.+...|-++.
T Consensus       413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~  458 (815)
T KOG1820|consen  413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD  458 (815)
T ss_pred             HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence            8899999999999999999999999999999999988877776655

>TIGR02270 conserved hypothetical protein

Probab=98.60  E-value=1.2e-06  Score=75.84  Aligned_cols=149  Identities=18%  Similarity=0.048  Sum_probs=107.7

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      +..++..+ .+++..+|..++..+...      +.  ...+..+.+ +.|.++.||.+++++|+.    ++.+.    ..
T Consensus        56 ~~~L~~aL~~d~~~ev~~~aa~al~~~------~~--~~~~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~----a~  119 (410)
T TIGR02270        56 TELLVSALAEADEPGRVACAALALLAQ------ED--ALDLRSVLAVLQAGPEGLCAGIQAALGW----LGGRQ----AE  119 (410)
T ss_pred             HHHHHHHHhhCCChhHHHHHHHHHhcc------CC--hHHHHHHHHHhcCCCHHHHHHHHHHHhc----CCchH----HH
Confidence            66778888 466788887665554221      11  122566666 778888899999999998    44443    34


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      +.|..+++++++.||..++..+.....         .-.+.+..+.+|++..||..++..++.+...       ...+.+
T Consensus       120 ~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L  183 (410)
T TIGR02270       120 PWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPRR-------LSESTL  183 (410)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHH
Confidence            556667789999999999977776221         1234566666799999999999999988643       345566


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHH
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      ...+.|.++.||.+|+..+..+.
T Consensus       184 ~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       184 RLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHcC
Confidence            77799999999999999986663

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.58  E-value=5e-07  Score=72.13  Aligned_cols=145  Identities=19%  Similarity=0.182  Sum_probs=107.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-cccccccc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-GVEHAHVL   87 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~~~l   87 (211)
                      ..+...++|.+..+-..|+.-+..++..+|..-  .-..++|.+.+ +.|....||.++...|..+.+.++ ..   ..+
T Consensus        56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~  132 (228)
T PF12348_consen   56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KIL  132 (228)
T ss_dssp             HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHH
Confidence            356667777788888899999999999999863  34567787777 889999999999999999999776 22   234


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcC--hhH-----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMR--ESD-----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~--~~~-----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      .+.+...+++.++.||..++..+..+.+..+  ...     ..+.+.+.+.++.+|+...||.++-..+..++..+|..
T Consensus       133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            7888999999999999999999999999998  222     23568999999999999999999999999998877765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.55  E-value=3.1e-06  Score=75.50  Aligned_cols=185  Identities=18%  Similarity=0.173  Sum_probs=142.9

Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccc
Q 039154            9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHA   84 (211)
Q Consensus         9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~   84 (211)
                      +|...+.+.|.+.+.+.=..+|..|..+-....+......+.|++.. +.++++.||.-++.+++.++..-++   --..
T Consensus        38 ~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~  117 (503)
T PF10508_consen   38 LPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD  117 (503)
T ss_pred             chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence            44445777787777766667788888888877777778888899999 9999999999999999888764322   1134


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-HH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-DL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---  159 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---  159 (211)
                      ..+++.+...+.|++..|...|++.|..+++.-..- .+ ...+.+.+..+...++-.+|.-+.+.+..++..-...   
T Consensus       118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~  197 (503)
T PF10508_consen  118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA  197 (503)
T ss_pred             ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            568899999999999999999999999999753221 12 3334777788777766667777777887776554333   


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                       ....+++.+++.+++++..||.+|+.-+.+++..
T Consensus       198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~  232 (503)
T PF10508_consen  198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAET  232 (503)
T ss_pred             HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence             2234899999999999999999999999999983

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=1.8e-06  Score=77.95  Aligned_cols=178  Identities=16%  Similarity=0.128  Sum_probs=134.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhCC---cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccc-------cCc------
Q 039154           18 LKNDDIQLRLNSIRRLSTIARALGE---ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPY-------VGG------   80 (211)
Q Consensus        18 l~s~~~~~R~~a~~~l~~ia~~lg~---~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~-------ig~------   80 (211)
                      -.++|.++|..|.+-|.+|....=.   ....+.|+++... ...++++|...+.+-|.++++-       .|.      
T Consensus       226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~  305 (859)
T KOG1241|consen  226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGL  305 (859)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            4588899999998888887643211   1233446666666 7788999998888888766552       110      


Q ss_pred             c--------ccccccchHHhh-hcc------chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH
Q 039154           81 V--------EHAHVLLPPLET-LCT------VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA  145 (211)
Q Consensus        81 ~--------~~~~~llp~l~~-l~~------d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~  145 (211)
                      +        ...+.++|.|.+ |.+      |++|.+-++|-.+|.-+++..+.+.+. +++|+|++-.+.++|+-|.++
T Consensus       306 ~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaa  384 (859)
T KOG1241|consen  306 PPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAA  384 (859)
T ss_pred             CchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHH
Confidence            0        112367777544 444      224677788888887777777766654 999999999999999999999


Q ss_pred             HhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          146 CGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       146 a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      +-.|+.+-.+-.+.    .....+|..+++..|++-+||.+++-+|+.+++.++.
T Consensus       385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e  439 (859)
T KOG1241|consen  385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE  439 (859)
T ss_pred             HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence            99999998877766    4577889999999999999999999999999999864

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.53  E-value=4.9e-06  Score=73.88  Aligned_cols=185  Identities=17%  Similarity=0.241  Sum_probs=151.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l   91 (211)
                      .|++.|||-|.+.|.+|...++-|++++||.    +++-.+.. +.-++..-|..-+-.++.++++.|+-    .++|.+
T Consensus       734 eLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~l  805 (975)
T COG5181         734 ELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTL  805 (975)
T ss_pred             HHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHH
Confidence            5789999999999999999999999999984    44556665 77778888888888888888888763    467887


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc---CCChH-HHHHHH
Q 039154           92 ETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP---SAPDI-LKTELR  165 (211)
Q Consensus        92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~---~~~~~-~~~~l~  165 (211)
                      ..=..-.+..|+....+++.-+.+-.+..  +.-..+.|++.....|...-.|..++..+--++.   ..|.+ ..-.|+
T Consensus       806 m~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLl  885 (975)
T COG5181         806 MSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLL  885 (975)
T ss_pred             HhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHH
Confidence            77777788999999999999988887764  4446688999999999999899998888876644   44444 456777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHH
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS  205 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp  205 (211)
                      +++..-.-|++|.|-.+.-..+..++..+|+..+..++..
T Consensus       886 NllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~q  925 (975)
T COG5181         886 NLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQ  925 (975)
T ss_pred             HHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            7777778899999999999999999999999877776654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.49  E-value=1.3e-06  Score=77.46  Aligned_cols=197  Identities=18%  Similarity=0.206  Sum_probs=143.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHH-HHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDE-VLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~-VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      +-.++-..|+.++--|.++++.|..-|...|++..-+.++|++.+  +.|++.. |-+.+-.-|..+-..  ..-..+.|
T Consensus       170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl--~~pyvhkI  247 (975)
T COG5181         170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDL--KVPYVHKI  247 (975)
T ss_pred             HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccc--cccceeeE
Confidence            445566677888999999999999999999999999999999987  7777654 334443334333321  12234455


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcCh---------------hHH----------------HHhhHHHHHHhhcC
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRE---------------SDL----------------VDWFIPLVKRLAAG  136 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---------------~~~----------------~~~l~p~i~~l~~d  136 (211)
                      +-....++-|++.-+|...-+.+.+++...|.               +.+                -+.++|++..+|.+
T Consensus       248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~S  327 (975)
T COG5181         248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGS  327 (975)
T ss_pred             EEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC
Confidence            55556666777777776553333333333211               000                24589999999999


Q ss_pred             C-CchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc---hhhHHHHHHHHHh
Q 039154          137 E-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP---AHLKTDIMSIFED  209 (211)
Q Consensus       137 ~-~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~---~~~~~~llp~~~~  209 (211)
                      . +|.-|..+..+...++..+|-.   ....++.+.-+++.|+..-||..+|.++..+++..+|   +.+-.-+-|+|+.
T Consensus       328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g  407 (975)
T COG5181         328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG  407 (975)
T ss_pred             ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            8 9999999999999999888876   5677889999999999999999999999999999876   5665667777653

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.48  E-value=7.2e-06  Score=74.14  Aligned_cols=185  Identities=18%  Similarity=0.162  Sum_probs=146.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCccc--cccccchHHhh
Q 039154           18 LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLET   93 (211)
Q Consensus        18 l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~   93 (211)
                      +.+.|+-+|.-..+....+|+++|-    ..|+||+.. |... +++-|++..+...+++-+.|-.-  +...++.++..
T Consensus       485 idn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~  560 (1172)
T KOG0213|consen  485 IDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH  560 (1172)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence            4577888999999999999999995    678999999 8765 89999999888888888777432  34456778899


Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHH
Q 039154           94 LCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS  166 (211)
Q Consensus        94 l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~  166 (211)
                      .+.|++..||.-++.++..+++..++   +.+...+-|+-+.......- +-.+..+.++-+++.+.++    +..+.+-
T Consensus       561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevml  639 (1172)
T KOG0213|consen  561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVML  639 (1172)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence            99999999999999999999888765   55556666776666555432 2345556677777777776    4556677


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhHHHHhhhC--chhhHHHHHHHH
Q 039154          167 IYTQLCQDDMPMVRRSAASNLRKFAATVE--PAHLKTDIMSIF  207 (211)
Q Consensus       167 ~~~~L~~D~~~~VR~aaa~~l~~~~~~~~--~~~~~~~llp~~  207 (211)
                      ++.+=.+-++.+.++...+-+.+.+..-|  ++++..+++|.|
T Consensus       640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~f  682 (1172)
T KOG0213|consen  640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEF  682 (1172)
T ss_pred             HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHH
Confidence            77777888999999999999999999876  679999999987

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=1.3e-05  Score=70.56  Aligned_cols=180  Identities=16%  Similarity=0.149  Sum_probs=137.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      +...+..+.|++.+.+..+...+..+.+.-...    -...-++|.+.+ + .++++.++..+|-+|.+++.  |..+..
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs--gtse~T  145 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS--GTSEQT  145 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc--Cchhhc
Confidence            677788899999999998888887664332221    144567899988 4 58889999999999999987  333322


Q ss_pred             -----cccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hHHH--HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           85 -----HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SDLV--DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        85 -----~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~--~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                           .--+|+|..++...+..||+.|+.+|++++..-+.  +.+-  ..+.|++.-+..+........+.-.+..+|..
T Consensus       146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG  225 (514)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence                 23479999999999999999999999999988654  2222  23556666666665556666777788888877


Q ss_pred             CChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          156 APDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       156 ~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      -.+.    ....++|.+..|+++.+++|..-++-++.-+++
T Consensus       226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd  266 (514)
T KOG0166|consen  226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD  266 (514)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            6332    568899999999999999999999998877765

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.48  E-value=3.1e-06  Score=78.03  Aligned_cols=193  Identities=13%  Similarity=0.189  Sum_probs=140.6

Q ss_pred             CCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhh-hh-cCCChHHHHHHHHHHHhccccccCc
Q 039154            3 MVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFL-SA-NNDDDDEVLLAMAEELGVFIPYVGG   80 (211)
Q Consensus         3 ~~~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l-~~-~~D~~~~VR~~~a~~L~~l~~~ig~   80 (211)
                      |++.+..-+.-++.++.|....+|..++..|+.+|...+.+.. .+++.-+ .+ .+...+.--++..+.|+.++...|.
T Consensus       168 l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~  246 (1233)
T KOG1824|consen  168 LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH  246 (1233)
T ss_pred             CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence            3444444588889999999999999999999999988887654 3444433 44 4445555556777889998887774


Q ss_pred             --cccccccchHHhhhc---cchhhHHHHHHHHHHHHHHhhcChhHH------HHhhHHHHHH---------------hh
Q 039154           81 --VEHAHVLLPPLETLC---TVEETCMRDKAVESLCRIGSQMRESDL------VDWFIPLVKR---------------LA  134 (211)
Q Consensus        81 --~~~~~~llp~l~~l~---~d~~~~VR~~a~~~l~~l~~~l~~~~~------~~~l~p~i~~---------------l~  134 (211)
                        ..+...+.|.+.+.+   +-++++.|++++.++..+....+.+..      .+.++.++.-               ..
T Consensus       247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~  326 (1233)
T KOG1824|consen  247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL  326 (1233)
T ss_pred             hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence              345677899999988   666789999999999999999877632      2333333310               00


Q ss_pred             ---------------cCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          135 ---------------AGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       135 ---------------~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                                     +|-+|.||+++|+++..+...-.+-   +...+-|..+.=.+|.+..||.-....+-.+.+..++
T Consensus       327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP  406 (1233)
T ss_pred             hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence                           0235999999999998876554432   5667778888888899999998888888777776654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.47  E-value=3.2e-06  Score=65.24  Aligned_cols=109  Identities=18%  Similarity=0.178  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHH
Q 039154          100 TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMV  179 (211)
Q Consensus       100 ~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~V  179 (211)
                      +.||..++-+++.++...+.  +-+..+|.+....+|+++.||..+...+..+...---..+..++..+..++.|++++|
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~I   79 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEI   79 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHH
Confidence            56777777777777777653  2244556666666777778888777777666433111134566666777778888888


Q ss_pred             HHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154          180 RRSAASNLRKFAATVEPAHLKTDIMSIFEDL  210 (211)
Q Consensus       180 R~aaa~~l~~~~~~~~~~~~~~~llp~~~~L  210 (211)
                      |..|...+.++...-+|+.+.+.+..++..|
T Consensus        80 r~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l  110 (178)
T PF12717_consen   80 RSLARSFFSELLKKRNPNIIYNNFPELISSL  110 (178)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            8888888888877777776666666665544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.47  E-value=1.1e-06  Score=62.40  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=83.1

Q ss_pred             ccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---
Q 039154           86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---  159 (211)
Q Consensus        86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---  159 (211)
                      .++|.+.+++.+.++.+|..++.++..++...+.   ..+...++|.+.++..|+..++|..++..+..++...+..   
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            4677777788888888999999999998876322   2334478888888888888899999999999998765432   


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                       ....+++.+.+++++.+..||+.++..|..++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             23457889999999999999999998887765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.46  E-value=4e-07  Score=56.30  Aligned_cols=52  Identities=27%  Similarity=0.215  Sum_probs=46.5

Q ss_pred             chHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          139 FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       139 ~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      |+||..++..++.++...+..   +..+++|.+..+++|+++.||.+|+..|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            789999999999987776665   6789999999999999999999999999864

...

>TIGR02270 conserved hypothetical protein

Probab=98.46  E-value=6.5e-06  Score=71.38  Aligned_cols=156  Identities=17%  Similarity=0.071  Sum_probs=106.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~   90 (211)
                      ++.+++.|.+.+..+|..+++.|++    +|.......|++.   +.++++.||.++...++....         .-.+.
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~a~~~L~~~---L~~~~p~vR~aal~al~~r~~---------~~~~~  151 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGW----LGGRQAEPWLEPL---LAASEPPGRAIGLAALGAHRH---------DPGPA  151 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhc----CCchHHHHHHHHH---hcCCChHHHHHHHHHHHhhcc---------ChHHH
Confidence            7899999999999999999888875    3554444444443   467888899888877776221         12345


Q ss_pred             HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc------------CCCh
Q 039154           91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP------------SAPD  158 (211)
Q Consensus        91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~------------~~~~  158 (211)
                      +..+++|+++.||..|+.+++.+...        ...|.+.....|.+..||..++..+..+..            .-|.
T Consensus       152 L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~  223 (410)
T TIGR02270       152 LEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGG  223 (410)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCc
Confidence            66667788888999988888887654        334445566778888888887766654422            1111


Q ss_pred             H--------H----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          159 I--------L----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       159 ~--------~----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      .        .    ....++.+..+++|+.  ||.+++..++.+..
T Consensus       224 ~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~  267 (410)
T TIGR02270       224 PHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGD  267 (410)
T ss_pred             cHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence            1        0    1245666777888865  89999988886654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=3e-06  Score=74.29  Aligned_cols=177  Identities=19%  Similarity=0.137  Sum_probs=139.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccc--cccccchHHh
Q 039154           18 LKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLE   92 (211)
Q Consensus        18 l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~   92 (211)
                      ..|.+-..|.-..-.+..++-.+|.+.   +++-+-|.+.-+.|.+..||..+++.+.++++...++.  +.+.|...+.
T Consensus        52 a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~  131 (675)
T KOG0212|consen   52 AYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLC  131 (675)
T ss_pred             ccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            456666667666667777777899987   65666666666889999999999999999999776643  3455777788


Q ss_pred             hhccchhhHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHH
Q 039154           93 TLCTVEETCMRDKAVESLCRIGSQMRESDL----VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELR  165 (211)
Q Consensus        93 ~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~  165 (211)
                      ++..|.+..||.+ ++-+..+.+....+..    -..++|.+..-..+-+...|.....-+.-+...-+-+   +...++
T Consensus       132 klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~l  210 (675)
T KOG0212|consen  132 KLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLL  210 (675)
T ss_pred             HHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHH
Confidence            8999999999865 4667777776655433    3558888888777778889999999888887766655   678999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +-+++.+.|+..+||.-+-..+.++...+.
T Consensus       211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~  240 (675)
T KOG0212|consen  211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIR  240 (675)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998888888764

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.43  E-value=3.5e-07  Score=49.80  Aligned_cols=30  Identities=40%  Similarity=0.430  Sum_probs=25.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      ++|.+.++++|++|+||.+|+.+|+++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            578899999999999999999999998875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.42  E-value=9.6e-06  Score=81.18  Aligned_cols=194  Identities=14%  Similarity=0.121  Sum_probs=148.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh-----hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP-----KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      -|..|++.|++.+...|.+|+-.|..++.  +++..+     ...+|.+.+ +.+.+++++..++..|.++... |..  
T Consensus       489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~--~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~--  563 (2102)
T PLN03200        489 GIPPLVQLLETGSQKAKEDSATVLWNLCC--HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADA--  563 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cch--
Confidence            46778888899999999999999999875  233222     245677777 8888899999999999998762 221  


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH------HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV------DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~------~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                        ..++.+..++..++..++..++..+..+....+.++..      +--+|.+.+|.++++-+++..++..+..++..-.
T Consensus       564 --~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~  641 (2102)
T PLN03200        564 --ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ  641 (2102)
T ss_pred             --hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence              23356667777777889999999999998877665432      3478999999999999999999999999987554


Q ss_pred             hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh----hHHHHHHHHHhh
Q 039154          158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH----LKTDIMSIFEDL  210 (211)
Q Consensus       158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~----~~~~llp~~~~L  210 (211)
                      +.    .....+|.++.+++.....||+.++..|..+......+.    +..-.+|.+.+|
T Consensus       642 d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L  702 (2102)
T PLN03200        642 DLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL  702 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence            43    346778999999999999999999999999997544432    223345555443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.36  E-value=3.6e-06  Score=75.72  Aligned_cols=152  Identities=14%  Similarity=0.137  Sum_probs=109.6

Q ss_pred             ChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC-C
Q 039154           59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG-E  137 (211)
Q Consensus        59 ~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d-~  137 (211)
                      +..+++..+.+++..+.+-...++..+.++|+|..-.+|.+.++++.++..+..+++.++-..+++.++|.+..++-- .
T Consensus       362 ~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt  441 (700)
T KOG2137|consen  362 DPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT  441 (700)
T ss_pred             CcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc
Confidence            344456666777777777777888888999998888889899999999999999999999888889999999888554 4


Q ss_pred             CchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh--CchhhHHHHHHHHHhhC
Q 039154          138 WFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV--EPAHLKTDIMSIFEDLT  211 (211)
Q Consensus       138 ~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~--~~~~~~~~llp~~~~L~  211 (211)
                      ...||..|.-+++.+.+.+... ..+.+.|+ .+-.+-.+|.+--.+..-...++-..  |.+.+.+.++|+++-|+
T Consensus       442 ~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi-~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls  517 (700)
T KOG2137|consen  442 NLYVKVNVLPCLAGLIQRLDKAAVLDELLPI-LKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS  517 (700)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence            4678888888888888666655 34455555 44444445555555555444444333  34778888888887653

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.36  E-value=9.5e-07  Score=79.13  Aligned_cols=186  Identities=18%  Similarity=0.189  Sum_probs=169.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      +.-+....++.|-++|..-++++......|.++.....++|-+.. ..|.++-+|......+..++..+|....-..++-
T Consensus       332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr  411 (690)
T KOG1243|consen  332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLR  411 (690)
T ss_pred             hhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHH
Confidence            455677889999999999999999999999999999999999999 9999999999999999999999988777778899


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIY  168 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~  168 (211)
                      .|..+..|++..+|-...-+++++++.+.+......+.-.+.+-..|+...-|.+....+......+... ...+++|..
T Consensus       412 ~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l  491 (690)
T KOG1243|consen  412 YLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSL  491 (690)
T ss_pred             HHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccc
Confidence            9999999999999999999999999999998888777777777889999999999999999998888877 678999999


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      .-+.-|++..||..+-..+..+...+..
T Consensus       492 ~pl~vd~e~~vr~~a~~~i~~fl~kl~~  519 (690)
T KOG1243|consen  492 VPLTVDPEKTVRDTAEKAIRQFLEKLEK  519 (690)
T ss_pred             cccccCcccchhhHHHHHHHHHHhhhhh
Confidence            9999999999999999999888776654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.36  E-value=2.5e-05  Score=67.37  Aligned_cols=191  Identities=13%  Similarity=0.070  Sum_probs=129.7

Q ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc---c
Q 039154           11 IAVLTDELKND-DIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG---V   81 (211)
Q Consensus        11 l~~l~~~l~s~-~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~---~   81 (211)
                      +..++.++.+. ..+.|..|+..|..+.-.=+..   +.-.+|+-.+.+ +.| .++..|+-+-..|..+.+.-..   +
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            45555666544 6888999999998875332222   223455555566 777 5555677777777777663211   1


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--  159 (211)
                      .....+...| +-.+|.++.|=..|.+.+..++....+...-..+.|.|..    .....-.++.+.+-.+++.+..+  
T Consensus       368 stE~ai~K~L-eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL  442 (516)
T KOG2956|consen  368 STEIAICKVL-EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL  442 (516)
T ss_pred             hHHHHHHHHH-HHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence            1112233333 4456777766666777767777777777666777888877    22233446667888899999988  


Q ss_pred             --HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154          160 --LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL  210 (211)
Q Consensus       160 --~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L  210 (211)
                        ...++.|.+++-++..+..|||+|..+|..+...+|-+.    +.|++..|
T Consensus       443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~----mePhL~~L  491 (516)
T KOG2956|consen  443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE----MEPHLEQL  491 (516)
T ss_pred             HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh----hhhHhhhc
Confidence              468999999999999999999999999999999999653    45555544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.34  E-value=1.7e-05  Score=79.51  Aligned_cols=181  Identities=13%  Similarity=0.111  Sum_probs=130.0

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhCCcch------hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-----c
Q 039154           16 DELKNDDIQLRLNSIRRLSTIARALGEERT------PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-----H   83 (211)
Q Consensus        16 ~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~------~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-----~   83 (211)
                      +.|.++++..+..++..++.+......+..      ...-+|.+.+ +..+++.+++.++..|.++..  |..+     .
T Consensus       571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a--~~~d~~~avv  648 (2102)
T PLN03200        571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS--SRQDLCESLA  648 (2102)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CChHHHHHHH
Confidence            334444444444444444444332222211      1245677777 777888899999988888776  2222     2


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESD----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      ....+|++..+++..+..+|..|+.+|..+......+.    +..-.+|.+.++.++.+-.++..++..+..++..-...
T Consensus       649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~  728 (2102)
T PLN03200        649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA  728 (2102)
T ss_pred             HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence            33457788888888889999999999999987544432    23447888888889998899999999998887765333


Q ss_pred             ---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154          160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH  198 (211)
Q Consensus       160 ---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~  198 (211)
                         .....++.+.+++++..+++|+.|+..|.++++..+.+.
T Consensus       729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~  770 (2102)
T PLN03200        729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD  770 (2102)
T ss_pred             HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence               345678999999999999999999999999999988765

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.32  E-value=7.7e-06  Score=73.67  Aligned_cols=191  Identities=14%  Similarity=0.142  Sum_probs=151.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHh---ccccccCccccccccch
Q 039154           14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELG---VFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~---~l~~~ig~~~~~~~llp   89 (211)
                      +++.+---|+.+.-.-.+.|..+-..+++.-....++|.+.+ +.++ ..|    ...|+   .|++-....++...++|
T Consensus       278 fLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~-~~v----p~~LP~v~~i~~~~s~~~~~~~~~p  352 (700)
T KOG2137|consen  278 FLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT-KMV----PIVLPLVLLIAEGLSQNEFGPKMLP  352 (700)
T ss_pred             hcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc-ccc----ccccchhhhhhhccchhhhhhhhhH
Confidence            444444457777777888899888888888888999999987 5322 111    11122   22222223445667788


Q ss_pred             HHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHH
Q 039154           90 PLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI  167 (211)
Q Consensus        90 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~  167 (211)
                      .+....+ -....++.-.++.+.-|.++.+++++.+.++|++.+-.+|..-.+-..+...++.+.+.+... .++.++|.
T Consensus       353 ~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~  432 (700)
T KOG2137|consen  353 ALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPR  432 (700)
T ss_pred             HHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHH
Confidence            8877777 556788889999999999999999999999999999999999988899999999999999877 57889999


Q ss_pred             HHHhcC-CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154          168 YTQLCQ-DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED  209 (211)
Q Consensus       168 ~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~  209 (211)
                      +-+++. .....||..++-+++.+++.++.-.+.++++|++..
T Consensus       433 l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~  475 (700)
T KOG2137|consen  433 LKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC  475 (700)
T ss_pred             hhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            988865 455899999999999999999999999999999864

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2.7e-06  Score=75.80  Aligned_cols=94  Identities=18%  Similarity=0.111  Sum_probs=58.5

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--------hHHHHhhH
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--------SDLVDWFI  127 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--------~~~~~~l~  127 (211)
                      +.|.++.||..+++.|-.+.+   +-+....+..-..+.++|++..||.+|++.+.-.++..+.        .......+
T Consensus       207 ~~~~D~~Vrt~A~eglL~L~e---g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF  283 (823)
T KOG2259|consen  207 EHDQDFRVRTHAVEGLLALSE---GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAF  283 (823)
T ss_pred             hcCCCcchHHHHHHHHHhhcc---cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHH
Confidence            566677777777777766665   2334445556666777777777777777777666666521        12233345


Q ss_pred             HHHHHhhcCCCchHHHhHHhHHHhh
Q 039154          128 PLVKRLAAGEWFTARVSACGLFHIA  152 (211)
Q Consensus       128 p~i~~l~~d~~~~vR~~~a~~l~~l  152 (211)
                      ..+.....|-+|.||.-+++.|+.+
T Consensus       284 ~~vC~~v~D~sl~VRV~AaK~lG~~  308 (823)
T KOG2259|consen  284 SSVCRAVRDRSLSVRVEAAKALGEF  308 (823)
T ss_pred             HHHHHHHhcCceeeeehHHHHhchH
Confidence            5555566677777777777766654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.25  E-value=2.5e-05  Score=71.73  Aligned_cols=174  Identities=19%  Similarity=0.227  Sum_probs=134.7

Q ss_pred             HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           11 IAVLTDE-LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      ++.+-.. ++|.+...|+.|++.+-. .-..|.+  -..|+|-+.+ ..-.+.|+++-+=-.|..+++.-+  +..-.-+
T Consensus        20 ~~~~~sg~l~s~n~~~kidAmK~iIa-~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLav   94 (757)
T COG5096          20 VAALSSGRLESSNDYKKIDAMKKIIA-QMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAV   94 (757)
T ss_pred             HhhhccccccccChHHHHHHHHHHHH-HHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHH
Confidence            4445555 889999999999988732 2345654  5778888777 668889999999888888877433  2222334


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH-HHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSI  167 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~-l~~~  167 (211)
                      +.+.+=++|+++.+|-.|+..+..+    +...+-..+++.++++.+|+...||+.|+.++.+++..-..-+.+. +...
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~  170 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI  170 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence            6666777899999999999887754    4557778899999999999999999999999999987644334444 7888


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      +..|+.|++|.|-.+|..+|..+-.-
T Consensus       171 l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         171 LKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHhhCCCchHHHHHHHHHHHhchh
Confidence            89999999999999999999766543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.24  E-value=3.9e-06  Score=58.21  Aligned_cols=65  Identities=22%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH--HHhhHHHHHHhhcCCCchHHHhHH
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL--VDWFIPLVKRLAAGEWFTARVSAC  146 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~--~~~l~p~i~~l~~d~~~~vR~~~a  146 (211)
                      ...+.|+|++...+.|+++.||.+|.++|.++++....+.+  .+.+++.+.+++.|+..+||.++.
T Consensus        23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~   89 (97)
T PF12755_consen   23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE   89 (97)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence            34455666666777777777777777777777777665543  456777777788888888887664

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.21  E-value=5.5e-06  Score=58.63  Aligned_cols=107  Identities=17%  Similarity=0.031  Sum_probs=76.1

Q ss_pred             hchhhhhhh-cCCChHHHHHHHHHHHhcccccc---CccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h
Q 039154           47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYV---GGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S  120 (211)
Q Consensus        47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~i---g~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~  120 (211)
                      ..++|.+.+ +.+.++.+|..++..++.++..-   ........++|.+..++.|+++.||..|+.+|..++...+.  +
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            446777777 77777888888888888877631   11112336778888888888888888888888888876533  1


Q ss_pred             H-HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhc
Q 039154          121 D-LVDWFIPLVKRLAAGEWFTARVSACGLFHIAY  153 (211)
Q Consensus       121 ~-~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~  153 (211)
                      . ...-++|.+.++.++...++|..++..+..++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            2 22347888888888888888888888877665

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.19  E-value=6.2e-05  Score=69.77  Aligned_cols=194  Identities=14%  Similarity=0.189  Sum_probs=136.7

Q ss_pred             CCCCcch--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhh----------------------------------
Q 039154            4 VDEPLYP--IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPK----------------------------------   47 (211)
Q Consensus         4 ~~~~~~p--l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~----------------------------------   47 (211)
                      .|++-+|  +..++..|.+.|.++..-|++=++-+++.++.++.+.                                  
T Consensus        40 Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~  119 (1233)
T KOG1824|consen   40 LDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS  119 (1233)
T ss_pred             ccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence            3455555  8899999999999999999999998887776654221                                  


Q ss_pred             -----------chhhhhhh---cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHH
Q 039154           48 -----------ELIPFLSA---NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLC  111 (211)
Q Consensus        48 -----------~L~p~l~~---~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~  111 (211)
                                 .+.|.+.+   .+.+..-++..+.+.++.+....|+  .++...++..+.--+......||..|+.+++
T Consensus       120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~  199 (1233)
T KOG1824|consen  120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALG  199 (1233)
T ss_pred             cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence                       11122222   1122222444444444443333332  2234445555555556666789999999999


Q ss_pred             HHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhc---CCCCHHHHHHHHH
Q 039154          112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLC---QDDMPMVRRSAAS  185 (211)
Q Consensus       112 ~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~---~D~~~~VR~aaa~  185 (211)
                      .++...+.+-....+--.+++|.+......-..-..+++.++...|..   ....++|...+.|   +-.+-+.|..+.+
T Consensus       200 ~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQ  279 (1233)
T KOG1824|consen  200 HLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQ  279 (1233)
T ss_pred             HHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHH
Confidence            999999999888888888889988766543334457788888888876   4678999999999   7778899999999


Q ss_pred             hhHHHHhhhCch
Q 039154          186 NLRKFAATVEPA  197 (211)
Q Consensus       186 ~l~~~~~~~~~~  197 (211)
                      .++.|....+.+
T Consensus       280 ale~fl~rcp~e  291 (1233)
T KOG1824|consen  280 ALESFLRRCPKE  291 (1233)
T ss_pred             HHHHHHHhChhh
Confidence            999999988774

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=8.6e-05  Score=67.38  Aligned_cols=182  Identities=21%  Similarity=0.181  Sum_probs=142.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHH-------HhCCc--------------chhhchhhhhhh-c-C------CChH
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIAR-------ALGEE--------------RTPKELIPFLSA-N-N------DDDD   61 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~-------~lg~~--------------~~~~~L~p~l~~-~-~------D~~~   61 (211)
                      .+..+..++|+|.++.+.++.-=+.|+.       ..|..              ..-..++|.+.+ + +      ||++
T Consensus       261 faitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW  340 (859)
T KOG1241|consen  261 FAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDW  340 (859)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccC
Confidence            4556788999999999988877665442       22211              122377888876 2 2      3456


Q ss_pred             HHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCC
Q 039154           62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEW  138 (211)
Q Consensus        62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~  138 (211)
                      .+-++++..|.-+++.+| ++...+++|.+++=++.++|.=|++|+-+++.+.+--.+....   +..+|.+..+-.|++
T Consensus       341 np~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s  419 (859)
T KOG1241|consen  341 NPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS  419 (859)
T ss_pred             cHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence            699999999999999776 4567799999999999999999999999999998887776554   457899988888999


Q ss_pred             chHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          139 FTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       139 ~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      -.||.+++-.|+.++..+...     .....++.+..-++| +|.|-..++-.+..+++.+
T Consensus       420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~  479 (859)
T KOG1241|consen  420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAA  479 (859)
T ss_pred             hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHH
Confidence            999999999999998887654     445677777777777 4788888888888888665

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=1.5e-05  Score=71.73  Aligned_cols=140  Identities=20%  Similarity=0.162  Sum_probs=115.8

Q ss_pred             hhhhh-cCCChHHHHHHHHHHHhccccccCccccc---ccc----chHHhhhccchhhHHHHHHHHHHHHHHhh----cC
Q 039154           51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA---HVL----LPPLETLCTVEETCMRDKAVESLCRIGSQ----MR  118 (211)
Q Consensus        51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~---~~l----lp~l~~l~~d~~~~VR~~a~~~l~~l~~~----l~  118 (211)
                      |++.. ++-.+.+||..|+.-+-++-+..|++.+.   ..+    ...+..|++|+-+.||..|++.+.++...    ++
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP  256 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP  256 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence            77888 88899999999999999999988875532   223    35678899999999999999988877655    58


Q ss_pred             hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          119 ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       119 ~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      +..+.+.+-..+-.++.|.+-.||.++.+.++.+...-... ..+.++|.+-.+++|++..||-|+..-|-.+
T Consensus       257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            88888888888899999999999999999999885442222 5788999999999999999999998876544

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=5.1e-05  Score=66.81  Aligned_cols=179  Identities=17%  Similarity=0.172  Sum_probs=138.1

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc
Q 039154           11 IAVLTDELK-NDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus        11 l~~l~~~l~-s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      +..+.+-|+ ++++..|.+|+-.|..||.-- ++.    ...--+|.|.. +...++.|+..+.-+||+++..  ++...
T Consensus       111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~R  187 (514)
T KOG0166|consen  111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCR  187 (514)
T ss_pred             HHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHH
Confidence            566777886 666999999999999998421 122    23344699888 8999999999999999998862  23333


Q ss_pred             cc------cchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           85 HV------LLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        85 ~~------llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      .+      +.|++..+..+........++.+|.++|..-.+   -..-..++|.+.++..+....|..-+|-.+..+...
T Consensus       188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            22      335555555555568888999999999988743   255678999999999999999999898888888766


Q ss_pred             CChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          156 APDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       156 ~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      -.+.    ......|.++.|+...++.|+..|.+.+|+++.
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence            5544    356788999999999999999999999999654

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=5.9e-05  Score=69.21  Aligned_cols=184  Identities=16%  Similarity=0.150  Sum_probs=133.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCC-ChHHHHHHHHHHHhccccccCc--ccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D-~~~~VR~~~a~~L~~l~~~ig~--~~~~~~l   87 (211)
                      ++..++.++++|+-+=++|++.+..++...+ +..-..+..++.+..+ ..++-|.-+.++++++++-.|.  ......|
T Consensus       770 l~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~L  848 (982)
T KOG4653|consen  770 LAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVL  848 (982)
T ss_pred             HHHHHHHhcccCceeeHHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHH
Confidence            7889999999999999999998888876643 3444455555555223 3356666777888888887764  2334467


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcC---hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----H
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMR---ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----L  160 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~---~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~  160 (211)
                      +..+.....|++...|.++..+++.++....   .+.+.+.+.-.+.-...|++.-||++|+..+..+-...|.+    .
T Consensus       849 i~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil  928 (982)
T KOG4653|consen  849 INTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL  928 (982)
T ss_pred             HHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence            7778888888888899999999999999876   34444444444444566999999999999999999988876    1


Q ss_pred             HHHHHHHHHH----hcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          161 KTELRSIYTQ----LCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       161 ~~~l~~~~~~----L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +..+...+..    .+.+++-.+|..+..++.++-..+.
T Consensus       929 r~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~  967 (982)
T KOG4653|consen  929 RLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE  967 (982)
T ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence            2222333222    3567778899999999888877765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.06  E-value=0.00055  Score=59.75  Aligned_cols=198  Identities=15%  Similarity=0.103  Sum_probs=141.9

Q ss_pred             HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccc--cCcccccc
Q 039154           11 IAVLTDE-LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPY--VGGVEHAH   85 (211)
Q Consensus        11 l~~l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~--ig~~~~~~   85 (211)
                      ++.+++. .++.+...|..+++.+..+.+..+.+..-+.++..+.+ . ....+.-|..+.+.+.-+.+-  +-+.....
T Consensus       191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~  270 (415)
T PF12460_consen  191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT  270 (415)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH
Confidence            3445555 44566899999999999999998776644555555544 3 344555555555555433332  12333455


Q ss_pred             ccchHHhhhccchhhHHHHHHHHHHHHHHhhcC---------------hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154           86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMR---------------ESDLVDWFIPLVKRLAAGEWFTARVSACGLFH  150 (211)
Q Consensus        86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~---------------~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~  150 (211)
                      .++.-|..++.|  +.+...+++++.-+....+               ++.+..+++|.+.+..++..-..|......+.
T Consensus       271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence            566667777777  7788999999998877732               24567788999988877766667877778888


Q ss_pred             hhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH---HHHHHHHhhC
Q 039154          151 IAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT---DIMSIFEDLT  211 (211)
Q Consensus       151 ~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~---~llp~~~~L~  211 (211)
                      .+...++.+    ....++|++++-+.=+++.||.++...+..+...- ++.+.+   .|+|.+-+||
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~ls  415 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLKLS  415 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhcC
Confidence            888888887    56889999999999999999999999999998876 444443   6777777664

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.04  E-value=6.5e-05  Score=64.85  Aligned_cols=145  Identities=15%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccc
Q 039154           11 IAVLTDELKN-DDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (211)
Q Consensus        11 l~~l~~~l~s-~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~   86 (211)
                      |..+.+-|.+ .+...|..|.+.|.++.+.=...   .+.-.+-..+....|..++|-+.+++..-..+....+......
T Consensus       331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~  410 (516)
T KOG2956|consen  331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN  410 (516)
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH
Confidence            3445555655 67888999999999887544332   2333333344447888888888888876665555556666667


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHH---hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD---WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~---~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      |.|++..    +++..-.++++-+-++++.++.|+..+   .+.|.+.+-+.+.+-.||+.+.+++..++..+|.+
T Consensus       411 i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~  482 (516)
T KOG2956|consen  411 ISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME  482 (516)
T ss_pred             HhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence            7777655    445566688899999999999998765   57899999999999999999999999999999943

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=7.7e-05  Score=71.98  Aligned_cols=200  Identities=18%  Similarity=0.183  Sum_probs=135.9

Q ss_pred             CCCCcch-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh---cCCCh-HHHHHHHHHHHhcccccc
Q 039154            4 VDEPLYP-IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA---NNDDD-DEVLLAMAEELGVFIPYV   78 (211)
Q Consensus         4 ~~~~~~p-l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~---~~D~~-~~VR~~~a~~L~~l~~~i   78 (211)
                      ||+-+.. ++.|+.+|.|..--+|.++|-.|..+-+-=..+...+++-.++..   ..||- +.||.++-.....+.+.+
T Consensus      1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444 678888898999999999999888876544444555555544443   45665 448887755444444421


Q ss_pred             ----------CccccccccchHHhh-hccchhhHHHHHHHHHHHHHHhhcChhH--------------------------
Q 039154           79 ----------GGVEHAHVLLPPLET-LCTVEETCMRDKAVESLCRIGSQMRESD--------------------------  121 (211)
Q Consensus        79 ----------g~~~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~l~~~~--------------------------  121 (211)
                                .+.+....++|.+.. -.-..-.+||..++..+.++.+.-|...                          
T Consensus      1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred             hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence                      134566778887533 2225567899999999888877754310                          


Q ss_pred             ---------------------------------------HHHhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChH--
Q 039154          122 ---------------------------------------LVDWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--  159 (211)
Q Consensus       122 ---------------------------------------~~~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~--  159 (211)
                                                             .-..++|.+.++.... .-..|.+||..+..+...+|.+  
T Consensus      1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred             HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence                                                   0122444444443332 2446777888888888888887  


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI  203 (211)
Q Consensus       160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l  203 (211)
                       +..+++...+...+|..+.||++.+.+.+.+++.-.++..+..+
T Consensus      1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI 1317 (1702)
T ss_pred             cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence             67889999999999999999999999999999988776654443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.97  E-value=8.2e-06  Score=44.30  Aligned_cols=29  Identities=14%  Similarity=0.147  Sum_probs=15.5

Q ss_pred             hHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154          126 FIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (211)
Q Consensus       126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~  154 (211)
                      ++|.+.++.+|++|+||.+++..++.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            34555555555555555555555555543

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.94  E-value=0.0012  Score=55.33  Aligned_cols=201  Identities=15%  Similarity=0.103  Sum_probs=132.0

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC----c
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIAR-ALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG----G   80 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~-~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig----~   80 (211)
                      .|...++.+.+.....|..+++.+..+-. ..-++   ..+..|+..+.. +.....+-+..++..++-++=.+|    .
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            48899999998899999999988876542 22222   234556666666 555444555667777887777776    2


Q ss_pred             cccccccchHHhhhccchh--hHHHHHHHHHHHHHHhhcCh--hHHHH--hhHH-HHHH--hhcCC---------CchHH
Q 039154           81 VEHAHVLLPPLETLCTVEE--TCMRDKAVESLCRIGSQMRE--SDLVD--WFIP-LVKR--LAAGE---------WFTAR  142 (211)
Q Consensus        81 ~~~~~~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~~l~~--~~~~~--~l~p-~i~~--l~~d~---------~~~vR  142 (211)
                      ++....+.|.|...+.|..  ..+|.+++.+|+-++-..+.  +.+..  ..+. .+..  ...|.         ...+.
T Consensus       124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            4556678899999999885  46788888888876555433  33221  1222 1111  11122         24577


Q ss_pred             HhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc---h---hhHHHHHHHHHhh
Q 039154          143 VSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP---A---HLKTDIMSIFEDL  210 (211)
Q Consensus       143 ~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~---~---~~~~~llp~~~~L  210 (211)
                      .++....+-+...++..    .....+|.|..+++.++.+||.+|..++.-+......   +   .-...|+..+..|
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~L  281 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLREL  281 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence            77777777777777763    3566889999999999999999999999866554431   1   2344455555554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=2.3e-05  Score=65.93  Aligned_cols=175  Identities=14%  Similarity=0.108  Sum_probs=124.6

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchh---hhhhhcCCChHHHHHHHHHHHhccccccCccc----cccccch
Q 039154           17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELI---PFLSANNDDDDEVLLAMAEELGVFIPYVGGVE----HAHVLLP   89 (211)
Q Consensus        17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~---p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~----~~~~llp   89 (211)
                      .++|.++.....+...++.+|-..|.......+.   |++.+...+.-+|+..+...+.+++.. ....    +.-- +.
T Consensus        93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGa-L~  170 (550)
T KOG4224|consen   93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGA-LE  170 (550)
T ss_pred             HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccc-hh
Confidence            3567777777777777777766665544333333   466666666777887777777777764 2111    1112 34


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKT  162 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~  162 (211)
                      ++..|.+-++..||..+..+|..+-+.-...  -+..--+|++..+.+.....||+.|+..++.++-.--..     ...
T Consensus       171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep  250 (550)
T KOG4224|consen  171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP  250 (550)
T ss_pred             hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence            4555888889999999999998886654322  223335899999999999999999999998875432211     235


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      +++|.++.|..|.++.|+.-|..+|+.++.-
T Consensus       251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd  281 (550)
T KOG4224|consen  251 KLVPALVDLMDDGSDKVKCQAGLALRNLASD  281 (550)
T ss_pred             chHHHHHHHHhCCChHHHHHHHHHHhhhccc
Confidence            6999999999999999999999999998864

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=97.91  E-value=0.0008  Score=60.19  Aligned_cols=187  Identities=18%  Similarity=0.181  Sum_probs=124.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE---ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EHA   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~---~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~~   84 (211)
                      ...+...|+++++.+|..+++.+..++..-+.   --....++|.+.. +.|++.+|...+++.|..+++.-.+-  -+.
T Consensus        79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~  158 (503)
T PF10508_consen   79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD  158 (503)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence            46677889999999999999998776532211   0244678899988 89999999999999999998743221  112


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-H-
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-I-  159 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-~-  159 (211)
                      +.+.+.|..++...++.+|..+.+.+..++..-+.-  .+ .+-+++.+.+..+++.--+|.++++.+..++..-.. + 
T Consensus       159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~y  238 (503)
T PF10508_consen  159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQY  238 (503)
T ss_pred             cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHH
Confidence            333777888888878899999999988887654331  11 223677777766777778999999999999883222 1 


Q ss_pred             -HHHHHHHHHHHh----cCCC-CHHHHH-HHHHhhHHHHhhhCchh
Q 039154          160 -LKTELRSIYTQL----CQDD-MPMVRR-SAASNLRKFAATVEPAH  198 (211)
Q Consensus       160 -~~~~l~~~~~~L----~~D~-~~~VR~-aaa~~l~~~~~~~~~~~  198 (211)
                       .+..+++.+.++    -.|+ ...+.- .....+++++.. +|..
T Consensus       239 L~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~  283 (503)
T PF10508_consen  239 LEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQE  283 (503)
T ss_pred             HHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHH
Confidence             223344444444    4455 233332 222455555554 4433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.91  E-value=9.6e-06  Score=50.01  Aligned_cols=53  Identities=25%  Similarity=0.162  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHHHH
Q 039154           61 DEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLCRI  113 (211)
Q Consensus        61 ~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l  113 (211)
                      |.||..++..||.++...+.  ......++|.|..+++|+++.||..|+.+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            57888888888887764332  234556778888888888778888888887654

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.90  E-value=0.0003  Score=64.79  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc-
Q 039154            9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV-   86 (211)
Q Consensus         9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~-   86 (211)
                      ..++.+.+.+++.|+..|-.|++-++.+    +-...-..+++-+.+ ..|.+++||+.|+-++..+-+ ++.+...+. 
T Consensus        92 LavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g  166 (757)
T COG5096          92 LAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELG  166 (757)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhccc
Confidence            3466677777777777777777666543    333333444555555 677777777777777776655 444444444 


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~  116 (211)
                      ..-.+..+..|+++.|-..|+-+|..+.+.
T Consensus       167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         167 LIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            555566777777777777777777666655

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.89  E-value=8.4e-05  Score=65.96  Aligned_cols=163  Identities=13%  Similarity=0.041  Sum_probs=120.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      .-++-.+.|.|..+|..+++.|..+...+|+  +..-+-|+.-+.+ .-|-++-||+.|...|-.+.+.-|.++  ..+.
T Consensus        94 ~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~  171 (885)
T COG5218          94 YHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIV  171 (885)
T ss_pred             HHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHH
Confidence            3445567899999999999999999999998  5566667766777 889999999999999999887555433  3455


Q ss_pred             hHHhhhc-cchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH-HhHHHhhccCCChHHHHHHHH
Q 039154           89 PPLETLC-TVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA-CGLFHIAYPSAPDILKTELRS  166 (211)
Q Consensus        89 p~l~~l~-~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~-a~~l~~l~~~~~~~~~~~l~~  166 (211)
                      .+|..+. .|+...||..|.-.+.          +.+.-.|++..-+.|.+-..|+++ +.++|.++....-+..+.++ 
T Consensus       172 n~l~~~vqnDPS~EVRr~allni~----------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~-  240 (885)
T COG5218         172 NLLKDIVQNDPSDEVRRLALLNIS----------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL-  240 (885)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHee----------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh-
Confidence            5655544 5778999999886653          235667888888888886666554 67777775544433333333 


Q ss_pred             HHHHhcCCCCHHHHHHHHHhh
Q 039154          167 IYTQLCQDDMPMVRRSAASNL  187 (211)
Q Consensus       167 ~~~~L~~D~~~~VR~aaa~~l  187 (211)
                      ++.--+.|.+..||.+++..+
T Consensus       241 l~ewgl~dRe~sv~~a~~d~i  261 (885)
T COG5218         241 LMEWGLLDREFSVKGALVDAI  261 (885)
T ss_pred             hhhhcchhhhhhHHHHHHHHH
Confidence            556668889999998888765

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=9e-05  Score=66.40  Aligned_cols=171  Identities=17%  Similarity=0.146  Sum_probs=125.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CC-cc--hhh----chhhhhhh-cCCChHHHHHHHHHHHhccccc----
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL-GE-ER--TPK----ELIPFLSA-NNDDDDEVLLAMAEELGVFIPY----   77 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l-g~-~~--~~~----~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~----   77 (211)
                      -+...+.|++++..+|.+|++.+.-.++.. ++ ++  +..    ..+.-+.. ..|-+..||..+++.||.+-++    
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~  315 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI  315 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence            345678899999999999999999888877 22 22  222    22233444 6788999999999999988763    


Q ss_pred             ---------cC------------------c-----------------cccccccc-----hHHhhhccchhhHHHHHHHH
Q 039154           78 ---------VG------------------G-----------------VEHAHVLL-----PPLETLCTVEETCMRDKAVE  108 (211)
Q Consensus        78 ---------ig------------------~-----------------~~~~~~ll-----p~l~~l~~d~~~~VR~~a~~  108 (211)
                               .+                  |                 ++....|+     ..|..-++||=.+||.+|+.
T Consensus       316 i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~  395 (823)
T KOG2259|consen  316 IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVA  395 (823)
T ss_pred             HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHH
Confidence                     00                  0                 00111222     45677788999999999999


Q ss_pred             HHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039154          109 SLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS  185 (211)
Q Consensus       109 ~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~  185 (211)
                      ++..++..-+.  +...-+.++..+.+|+...||--+.+.+..++..+.  .+++-++.+..-+.|.++.||.++-.
T Consensus       396 Sl~~La~ssP~--FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i~eeql~~il~~L~D~s~dvRe~l~e  468 (823)
T KOG2259|consen  396 SLCSLATSSPG--FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--IREEQLRQILESLEDRSVDVREALRE  468 (823)
T ss_pred             HHHHHHcCCCC--cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999876443  234556778888999999999999999888876632  45677888999999999999987644

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.00064  Score=65.94  Aligned_cols=198  Identities=15%  Similarity=0.125  Sum_probs=139.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-   84 (211)
                      ++.+...+.|.||+.|.+.+==|-.+...+|...    ..+++.-.|.. +.|+++-+.-.+++=||-+-+ +|+.... 
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~~~k~  898 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDSSLKK  898 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCchhHH
Confidence            4556666779999999998877777778888543    34555566666 778888888777777665544 2211111 


Q ss_pred             --------------------------------------------------------cccchHHhhhccch-hhHHHHHHH
Q 039154           85 --------------------------------------------------------HVLLPPLETLCTVE-ETCMRDKAV  107 (211)
Q Consensus        85 --------------------------------------------------------~~llp~l~~l~~d~-~~~VR~~a~  107 (211)
                                                                              ..++.-|++|++.. -|.-|..|+
T Consensus       899 ~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaA  978 (1702)
T KOG0915|consen  899 SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAA  978 (1702)
T ss_pred             HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchh
Confidence                                                                    11233345555544 366677788


Q ss_pred             HHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHH
Q 039154          108 ESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRS  182 (211)
Q Consensus       108 ~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~a  182 (211)
                      -.++.|++.-+.+  .....++|.+-+.-=||.-.|+.+...+-..+...-..-   +.++++.-++.-|.+.+|.||.+
T Consensus       979 fGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVRea 1058 (1702)
T KOG0915|consen  979 FGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREA 1058 (1702)
T ss_pred             hchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            8888877776443  344667888888888999889998888888886653332   66777777788899999999999


Q ss_pred             HHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154          183 AASNLRKFAATVEPAHLKTDIMSIFED  209 (211)
Q Consensus       183 aa~~l~~~~~~~~~~~~~~~llp~~~~  209 (211)
                      ++-+|.++..-=+.+.+.+++.-+|..
T Consensus      1059 sclAL~dLl~g~~~~~~~e~lpelw~~ 1085 (1702)
T KOG0915|consen 1059 SCLALADLLQGRPFDQVKEKLPELWEA 1085 (1702)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            999999999987778877777666543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00022  Score=65.60  Aligned_cols=186  Identities=15%  Similarity=0.114  Sum_probs=132.5

Q ss_pred             CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc
Q 039154            6 EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE   82 (211)
Q Consensus         6 ~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~   82 (211)
                      -+..|++.-+.++.++-+..|..++..+..+.+.-.+  -.....++-++.+ +.|+++.|-..+.+-+..+++.     
T Consensus       724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-----  798 (982)
T KOG4653|consen  724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-----  798 (982)
T ss_pred             ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----
Confidence            4567899999999999999999999999888763222  2345667777788 9999999999998877777774     


Q ss_pred             cccccchHHhhhccch----hhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           83 HAHVLLPPLETLCTVE----ETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~----~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                      .-+.++|.+.+....+    ...-|...=+++.+++...|.=  .....++..+.+...|+.-+-|.+.+.+++.++...
T Consensus       799 y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  799 YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence            2345666655422222    1234555557777777777652  334466777777777888888999999999998765


Q ss_pred             ChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          157 PDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       157 ~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      .-.    +-+-+..+..-.-.|.++-||++|+.-+..+....|.
T Consensus       879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence            422    2233333333334599999999999999999998885

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=0.00052  Score=62.15  Aligned_cols=164  Identities=12%  Similarity=0.017  Sum_probs=111.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      +.-++...+|.+..+|-.+++.|..+.-..+.  +..-+.|..-+.. +.|-+|.||..|..+|..+..--+.+  .-.+
T Consensus        87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e~~v  164 (892)
T KOG2025|consen   87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--ECPV  164 (892)
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--cccH
Confidence            34556677899999999999988766542222  2333444444555 88999999999999999887532322  2345


Q ss_pred             chHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH-HhHHHhhccCCChHHHHHHH
Q 039154           88 LPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA-CGLFHIAYPSAPDILKTELR  165 (211)
Q Consensus        88 lp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~-a~~l~~l~~~~~~~~~~~l~  165 (211)
                      ..++..+++ |+++.||.+|..++..          .+.-+|+|..-+.|.+-.+|+.+ ..+++++ . +-....++..
T Consensus       165 ~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d-~r~lsi~krv  232 (892)
T KOG2025|consen  165 VNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-D-LRSLSIDKRV  232 (892)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-h-hhhhhHHHHH
Confidence            556666555 6689999999877643          35567888888888887777765 4555665 2 1111234666


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhH
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLR  188 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~  188 (211)
                      .++..-++|.+..||+|+...+.
T Consensus       233 ~LlewgLnDRe~sVk~A~~d~il  255 (892)
T KOG2025|consen  233 LLLEWGLNDREFSVKGALVDAIL  255 (892)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHH
Confidence            67777788888888888876553

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.00022  Score=60.17  Aligned_cols=184  Identities=18%  Similarity=0.158  Sum_probs=125.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--cc--
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GV--   81 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~--   81 (211)
                      +..+.+.++|.|+.+|-.++..++.||-.--..    ++.-.++|-+.+ ..|.++.|+..++.+|++++..-.  -+  
T Consensus       210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv  289 (550)
T KOG4224|consen  210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV  289 (550)
T ss_pred             chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence            556888999999999999999999887211111    233448898888 778889999999999998876210  00  


Q ss_pred             ---------------------------------------ccccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcCh--
Q 039154           82 ---------------------------------------EHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRE--  119 (211)
Q Consensus        82 ---------------------------------------~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~--  119 (211)
                                                             ....-++.+|..++... +..++..|+..|-.++..-..  
T Consensus       290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~  369 (550)
T KOG4224|consen  290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV  369 (550)
T ss_pred             hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh
Confidence                                                   00111222344444433 455677777777777664322  


Q ss_pred             -hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC-ChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          120 -SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA-PDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       120 -~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~-~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                       ..+..--+|.+..|.-|....||.-...+|..++..- .++  ....+.|+++.+..|++.+||-.+|.+|.++..-.
T Consensus       370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence             2344557899999999998877776666665553322 122  23567899999999999999999999999987654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00098  Score=62.77  Aligned_cols=197  Identities=16%  Similarity=0.124  Sum_probs=134.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--cccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~~~~~~l   87 (211)
                      ++.+++.+++-|..+|=+|++.++.++..++++-..+.+-..+.- .--+++..++.++-.|+.++. -|  .......+
T Consensus       343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~-rGlLlps~l~dV  421 (1133)
T KOG1943|consen  343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL-RGLLLPSLLEDV  421 (1133)
T ss_pred             HHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh-cCCcchHHHHHH
Confidence            677888899999999999999999999999976543333222221 223367889999999988876 12  23345577


Q ss_pred             chHHhhhccchh--------hHHHHHHHHHHHHHHhhcChhHHHHhhHH----HHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           88 LPPLETLCTVEE--------TCMRDKAVESLCRIGSQMRESDLVDWFIP----LVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        88 lp~l~~l~~d~~--------~~VR~~a~~~l~~l~~~l~~~~~~~~l~p----~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      +|++..-+..++        ..||.+|...+=.++..-++...+..+-.    ++....=|+...+|++++..|.+....
T Consensus       422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR  501 (1133)
T KOG1943|consen  422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR  501 (1133)
T ss_pred             HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence            888777666553        35899999999999999888776653322    233345588889999998888776554


Q ss_pred             CCh-------------------------------HHHHHHHHHHHHhcC----CCCHHHHHHHHHhhHHHHhhhCchhhH
Q 039154          156 APD-------------------------------ILKTELRSIYTQLCQ----DDMPMVRRSAASNLRKFAATVEPAHLK  200 (211)
Q Consensus       156 ~~~-------------------------------~~~~~l~~~~~~L~~----D~~~~VR~aaa~~l~~~~~~~~~~~~~  200 (211)
                      .|+                               ++-....|.|-.|..    .=++.+|.-++.+|++++..-+ +...
T Consensus       502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p-k~~a  580 (1133)
T KOG1943|consen  502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP-KYLA  580 (1133)
T ss_pred             CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH-Hhhc
Confidence            332                               011223445555544    3457899999999999766544 4444


Q ss_pred             -HHHHHHHHh
Q 039154          201 -TDIMSIFED  209 (211)
Q Consensus       201 -~~llp~~~~  209 (211)
                       ..+.|+++.
T Consensus       581 ~~~L~~lld~  590 (1133)
T KOG1943|consen  581 DYVLPPLLDS  590 (1133)
T ss_pred             ccchhhhhhh
Confidence             456666643

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.80  E-value=0.00077  Score=56.23  Aligned_cols=178  Identities=18%  Similarity=0.248  Sum_probs=118.9

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc-----------cc
Q 039154           16 DELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV-----------EH   83 (211)
Q Consensus        16 ~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~-----------~~   83 (211)
                      ..++|.++.+|..+++-++..+ .+..+.. .+-++.+.+ ++.++++||..+.+.+-++.-.-|.+           ..
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~-Lld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCC-LLDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHH-HhChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            5688999999999999997654 5666554 455666666 76669999999999998888766632           12


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHH--HhhcCh-hHH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRI--GSQMRE-SDL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l--~~~l~~-~~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      ...++.++..++.++++.+|..|++.+.++  ...+.. ..+ ...++-++.- ...++.+.|.+...-|+..+..-...
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p-~t~~~~~LrQ~L~~Ffp~y~~s~~~~  190 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNP-STEDNQRLRQCLSVFFPVYASSSPEN  190 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCc-ccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence            346778889999999999999999999995  455555 333 3333333332 33345688988888888776543322


Q ss_pred             ---HHHHHHHHHHHhcCCCC----HHHHHHHHHhhHHHHhhhCc
Q 039154          160 ---LKTELRSIYTQLCQDDM----PMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       160 ---~~~~l~~~~~~L~~D~~----~~VR~aaa~~l~~~~~~~~~  196 (211)
                         ..+-+.|.|..+++.+.    +.-.-.+.+-...++...++
T Consensus       191 Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~  234 (298)
T PF12719_consen  191 QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP  234 (298)
T ss_pred             HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence               45667777777766433    23233333444444444443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.79  E-value=0.00061  Score=60.49  Aligned_cols=166  Identities=13%  Similarity=0.054  Sum_probs=115.1

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhc-CCChHHHHHHHHHHHhccccccCccccccccchHHhhh
Q 039154           16 DELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSAN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL   94 (211)
Q Consensus        16 ~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l   94 (211)
                      .-+||.|.++...++.--+.|+.   .+.-.+.-+.++.+. -...---|.+++..++.+.+.+....-          =
T Consensus       270 ~~mks~nd~va~qavEfWstice---Eeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e----------d  336 (858)
T COG5215         270 RFMKSQNDEVAIQAVEFWSTICE---EEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE----------D  336 (858)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHH---HHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC----------C
Confidence            34777777777777766665542   122222222333331 112223455555566655544322110          0


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHH
Q 039154           95 CTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQ  170 (211)
Q Consensus        95 ~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~  170 (211)
                      ..+++|.+-++|..+|.-+++..+...... ++.++.+-...++|+-|.+++-.|+.+-..-...    ...+.+|-.+.
T Consensus       337 ~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n  415 (858)
T COG5215         337 YYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN  415 (858)
T ss_pred             ccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence            134568899999999988888887776665 7888888889999999999999999998776666    46788899999


Q ss_pred             hcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          171 LCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       171 L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +..|+.-+|+.+.|-+++.+++++.
T Consensus       416 ~m~D~~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         416 EMSDSCLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             hcccceeehhhHHHHHHHHHHHHHH
Confidence            9999999999999999999998764

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.00052  Score=62.74  Aligned_cols=102  Identities=18%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             CCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhh----hh-cCCChHHHHHHHHHHHhccccccC
Q 039154            5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFL----SA-NNDDDDEVLLAMAEELGVFIPYVG   79 (211)
Q Consensus         5 ~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l----~~-~~D~~~~VR~~~a~~L~~l~~~ig   79 (211)
                      |..+.-|+-+...|++.|+..|-.|++-+..|-        -.-+.|+.    .+ ..|..+.||+.+|.+++.+-. ++
T Consensus       104 dLALLSIntfQk~L~DpN~LiRasALRvlSsIR--------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld  174 (968)
T KOG1060|consen  104 DLALLSINTFQKALKDPNQLIRASALRVLSSIR--------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LD  174 (968)
T ss_pred             CceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CC
Confidence            566777999999999999999999999887651        12344553    45 789999999999999999877 55


Q ss_pred             ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154           80 GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        80 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~  116 (211)
                      ++. ...|...++.|+.|..+-|--+|+-++..+|..
T Consensus       175 ~e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe  210 (968)
T KOG1060|consen  175 PEQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE  210 (968)
T ss_pred             hhh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence            554 448999999999999999988888888877654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.0032  Score=57.31  Aligned_cols=177  Identities=10%  Similarity=0.130  Sum_probs=126.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC--CChHHHHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN--DDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~--D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      ...|.+.|.++||.+.-+|++-++++|+.-+...  -.|-|.|.+ +.  +.+++. .-+.+-++.+.++ . +.....+
T Consensus       183 FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--L~LAP~ffkllttSsNNWmL-IKiiKLF~aLtpl-E-PRLgKKL  257 (877)
T KOG1059|consen  183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--LQLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPL-E-PRLGKKL  257 (877)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--ccccHHHHHHHhccCCCeeh-HHHHHHHhhcccc-C-chhhhhh
Confidence            5678888888889888888888888887766443  356687777 33  344543 4455666666663 2 2344567


Q ss_pred             chHHhhhccchh-hHHHHHHHHHHHHHHhhcC---hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154           88 LPPLETLCTVEE-TCMRDKAVESLCRIGSQMR---ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE  163 (211)
Q Consensus        88 lp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~---~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~  163 (211)
                      +|.+-++..... .++=..|++++....-.-|   .+..-+.++..+..+++|+....||-.+-++.++...=... ...
T Consensus       258 ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~-Vqa  336 (877)
T KOG1059|consen  258 IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA-VQA  336 (877)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH-HHH
Confidence            777777777664 5677777777766522222   23334567788888999999999999999999987765443 344


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      ...+.++++.|.++.+|--|..-+..++..
T Consensus       337 ~kdlIlrcL~DkD~SIRlrALdLl~gmVsk  366 (877)
T KOG1059|consen  337 HKDLILRCLDDKDESIRLRALDLLYGMVSK  366 (877)
T ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence            567788999999999999998888777664

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.003  Score=55.19  Aligned_cols=106  Identities=19%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh----hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP----KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH   85 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~----~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~   85 (211)
                      +..+.+..+|.+-..|..|++.|..+|.- -|...+    ..+.-++.. +.+.+.+|-..+...|..+.+.+...+...
T Consensus       260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~  338 (533)
T KOG2032|consen  260 LLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLES  338 (533)
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhh
Confidence            44555667788888999999999999876 344332    233455556 556678899999998888888777777778


Q ss_pred             ccchH---HhhhccchhhHHHHHHHHHHHHHHhhc
Q 039154           86 VLLPP---LETLCTVEETCMRDKAVESLCRIGSQM  117 (211)
Q Consensus        86 ~llp~---l~~l~~d~~~~VR~~a~~~l~~l~~~l  117 (211)
                      +++++   +..+..++++.+|.+|.-.++.++..-
T Consensus       339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~  373 (533)
T KOG2032|consen  339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA  373 (533)
T ss_pred             hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence            88877   566888999999999888777776664

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.00042  Score=62.74  Aligned_cols=139  Identities=13%  Similarity=0.034  Sum_probs=106.4

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhh-------hhh-cCCChHHHHHHHHHHHhcc----ccccCcc
Q 039154           14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPF-------LSA-NNDDDDEVLLAMAEELGVF----IPYVGGV   81 (211)
Q Consensus        14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~-------l~~-~~D~~~~VR~~~a~~L~~l----~~~ig~~   81 (211)
                      +--.|+-.|.++|.+|+..+.+.-...|++.++++.-.+       +.. +.|+.|+||..+.+-+-.+    =..+.+.
T Consensus       179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~  258 (1005)
T KOG1949|consen  179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT  258 (1005)
T ss_pred             HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence            344688899999999999999998899998765554433       345 7899999999886655432    2223333


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA  152 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l  152 (211)
                      .....+-.++..++.|...+||.+..+.+..++..-....+.++++|.+.-+..|.+-+||.++...+-.+
T Consensus       259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            33333334567788888889999999999999888777788899999999999999999999988777655

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.56  E-value=0.0013  Score=58.58  Aligned_cols=52  Identities=17%  Similarity=0.133  Sum_probs=43.1

Q ss_pred             hHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          140 TARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       140 ~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .||.++..++.+++...+.. .......++.+.++|.+-+||-.|+..+..+-
T Consensus       502 ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         502 IVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            47888889998888777666 45678888899999999999999998887664

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.51  E-value=0.0023  Score=53.72  Aligned_cols=166  Identities=22%  Similarity=0.249  Sum_probs=118.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCCh--HHHHHHHHHHHhccccccCcc-c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDD--DEVLLAMAEELGVFIPYVGGV-E   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~--~~VR~~~a~~L~~l~~~ig~~-~   82 (211)
                      +..+...+|....+.+.-|++.++-++-.+|+.    ..-+.+.|.+.+ +.|..  +.+|.+++.+|+-..=+.|.+ +
T Consensus        88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~  167 (309)
T PF05004_consen   88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE  167 (309)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh
Confidence            566777788888788888999999999999843    355577788888 77754  468888888888655432321 2


Q ss_pred             cccccchHHhhh-----cc-c---------hhhHHHHHHHHHHHHHHhhcChhHHHH---hhHHHHHHhhcCCCchHHHh
Q 039154           83 HAHVLLPPLETL-----CT-V---------EETCMRDKAVESLCRIGSQMRESDLVD---WFIPLVKRLAAGEWFTARVS  144 (211)
Q Consensus        83 ~~~~llp~l~~l-----~~-d---------~~~~VR~~a~~~l~~l~~~l~~~~~~~---~l~p~i~~l~~d~~~~vR~~  144 (211)
                      ....++..++.+     .+ |         ++..|..+|+.+-.-++..++...+..   ..+|.+..+...+.-.||.+
T Consensus       168 ~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiA  247 (309)
T PF05004_consen  168 ETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIA  247 (309)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            222222333311     11 2         235789999999999999999855543   46888999988999999999


Q ss_pred             HHhHHHhhccCCCh-------HHHHHHHHHHHHhcCCCC
Q 039154          145 ACGLFHIAYPSAPD-------ILKTELRSIYTQLCQDDM  176 (211)
Q Consensus       145 ~a~~l~~l~~~~~~-------~~~~~l~~~~~~L~~D~~  176 (211)
                      +.+.+.-+++....       +....+...+..|.+|..
T Consensus       248 AGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS~  286 (309)
T PF05004_consen  248 AGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDSS  286 (309)
T ss_pred             HHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence            99999888765443       145678888888888764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.48  E-value=0.013  Score=48.07  Aligned_cols=197  Identities=19%  Similarity=0.175  Sum_probs=119.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhhcCCChHHHHHHHHHHHhccccc--cCcccccc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSANNDDDDEVLLAMAEELGVFIPY--VGGVEHAH   85 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~--ig~~~~~~   85 (211)
                      +.+-+.|.|+|+..|..+++-|..+...++++.    ..+-|+.++..--+|..-+..+ ...+..+.+.  ++++. ..
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~~~~~~~~-~~   79 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKMKNFSPES-AV   79 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhCcCCChhh-HH
Confidence            356678999999999999999999999999753    3355667777722566666554 5666555532  22222 22


Q ss_pred             ccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCC------------------chHHH
Q 039154           86 VLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEW------------------FTARV  143 (211)
Q Consensus        86 ~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~------------------~~vR~  143 (211)
                      .++..+.+-....  -..+|..+.+-+..+.+.....  .....++..+.++++.+.                  |....
T Consensus        80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~  159 (262)
T PF14500_consen   80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISE  159 (262)
T ss_pred             HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccch
Confidence            2222222211211  2457888888888777765332  112223333333333221                  11111


Q ss_pred             hHHhHHHhhccCC-----------------------------ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          144 SACGLFHIAYPSA-----------------------------PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       144 ~~a~~l~~l~~~~-----------------------------~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      .+-..|..++.++                             .+.+....+|.++.=+..+.+.|+.-+.+.|..-+..+
T Consensus       160 ~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  160 FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY  239 (262)
T ss_pred             hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence            1111111111111                             11155678888888888889999999999999999999


Q ss_pred             CchhhHHHHHHHHHhh
Q 039154          195 EPAHLKTDIMSIFEDL  210 (211)
Q Consensus       195 ~~~~~~~~llp~~~~L  210 (211)
                      |++.+..++.++|..|
T Consensus       240 ~~~~~~~~~~~iw~~l  255 (262)
T PF14500_consen  240 GADSLSPHWSTIWNAL  255 (262)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988765

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.44  E-value=0.0071  Score=50.44  Aligned_cols=153  Identities=13%  Similarity=0.103  Sum_probs=115.5

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH-----------HH
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL-----------VD  124 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~-----------~~  124 (211)
                      .+..++.||..+.+.||-++- ++. +....-++.+...++.++..||..|++++-.+.-..|.+..           ..
T Consensus        36 v~~~~~~vR~~al~cLGl~~L-ld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~  113 (298)
T PF12719_consen   36 VQSSDPAVRELALKCLGLCCL-LDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK  113 (298)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH-hCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence            667788999999999998775 444 34444566666655666899999999999999988776432           24


Q ss_pred             hhHHHHHHhhcCCCchHHHhHHhHHHhh--ccCCCh-H-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC--chh
Q 039154          125 WFIPLVKRLAAGEWFTARVSACGLFHIA--YPSAPD-I-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE--PAH  198 (211)
Q Consensus       125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l--~~~~~~-~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~--~~~  198 (211)
                      .+...+.+...+.+..+|..+++.+.++  ...+.. + ....|+-.|++=-..+...+|+....-++.++..-.  ++.
T Consensus       114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~  193 (298)
T PF12719_consen  114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQER  193 (298)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5777788887888888999999999996  455555 4 566777777777777778999999988888887544  466


Q ss_pred             hHHHHHHHHHhh
Q 039154          199 LKTDIMSIFEDL  210 (211)
Q Consensus       199 ~~~~llp~~~~L  210 (211)
                      +..-++|.+..+
T Consensus       194 l~~~f~~~l~~~  205 (298)
T PF12719_consen  194 LAEAFLPTLRTL  205 (298)
T ss_pred             HHHHHHHHHHHH
Confidence            667777877654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.40  E-value=0.0055  Score=49.95  Aligned_cols=187  Identities=10%  Similarity=0.032  Sum_probs=130.5

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc-ccccc
Q 039154           11 IAVLTDELK-NDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG-VEHAH   85 (211)
Q Consensus        11 l~~l~~~l~-s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~-~~~~~   85 (211)
                      ++.++..|+ ++||..+..+.-.++..|..-....  ..-..++.+.. +.++++.||..+..++.+++..... .....
T Consensus        14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~   93 (254)
T PF04826_consen   14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM   93 (254)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence            788888888 5678888888888877653211111  12244588888 8999999999999999988775432 23344


Q ss_pred             ccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC--hH-HH
Q 039154           86 VLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--DI-LK  161 (211)
Q Consensus        86 ~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~--~~-~~  161 (211)
                      ++-..+.....+. +..++.++.+.|..+.-.-.....-...+|.+..+....+-.+|..+.+.+..++..-.  .+ ..
T Consensus        94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~  173 (254)
T PF04826_consen   94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS  173 (254)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence            5555566555554 67899999999998864443333333356667778777888889999999888866533  22 34


Q ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHhhHHHHhhhCch
Q 039154          162 TELRSIYTQLCQDD-MPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       162 ~~l~~~~~~L~~D~-~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      .+....|+.|.+.+ ..++-..+..-+.++.+.+.++
T Consensus       174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            45667788888876 4777888888888887777654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.39  E-value=0.0087  Score=53.72  Aligned_cols=121  Identities=15%  Similarity=0.230  Sum_probs=65.9

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      .++.+++..+++|..+|..|++.|+.+++.-+  .....+.-.+.+ ++-+++..+.++-++|-.+.. .   +....|-
T Consensus        60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~-~---d~k~tL~  133 (556)
T PF05918_consen   60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLK-Q---DPKGTLT  133 (556)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-H----HHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-c---CcHHHHH
Confidence            37888888999999999999999988876532  333455666667 666666655666666655544 1   2222344


Q ss_pred             hHHhhhc--cchhhHHHHHHHHHHHHHHhhcCh------hHHHHhhHHHHHHhhcC
Q 039154           89 PPLETLC--TVEETCMRDKAVESLCRIGSQMRE------SDLVDWFIPLVKRLAAG  136 (211)
Q Consensus        89 p~l~~l~--~d~~~~VR~~a~~~l~~l~~~l~~------~~~~~~l~p~i~~l~~d  136 (211)
                      .++..+.  ..+++.||+.+++=+..=...++.      ++.++++...+++..+|
T Consensus       134 ~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D  189 (556)
T PF05918_consen  134 GLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD  189 (556)
T ss_dssp             HHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence            4444444  133456788777666444333322      34445555555555444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.0011  Score=60.35  Aligned_cols=135  Identities=19%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh
Q 039154           47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW  125 (211)
Q Consensus        47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~  125 (211)
                      ++--|++.+ +.|.+|..|..-.-.+.-  .++|.. ....|-.+|.--.+|.++.||.+|+-+++=++-.-+     +.
T Consensus       518 e~Ad~lI~el~~dkdpilR~~Gm~t~al--Ay~GTg-nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-----~~  589 (929)
T KOG2062|consen  518 EDADPLIKELLRDKDPILRYGGMYTLAL--AYVGTG-NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-----EQ  589 (929)
T ss_pred             hhhHHHHHHHhcCCchhhhhhhHHHHHH--HHhccC-chhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----hh
Confidence            355588888 889999999876554432  123321 122333444455689999999999999887665522     33


Q ss_pred             hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      +...+.-|+++=+..||+.+|-.++-.|..-|..   .-+.++..|.+|+.--||+.|.-++.-+.-
T Consensus       590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence            4444555677778899999999999999998876   556667778889999999999887765543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=97.28  E-value=0.0026  Score=59.50  Aligned_cols=138  Identities=14%  Similarity=0.122  Sum_probs=117.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhh
Q 039154           18 LKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL   94 (211)
Q Consensus        18 l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l   94 (211)
                      ++|-|..+=..+++.|..||+.+++.  ......+|.+.. +.+.-..+|-++...+..+++    ......+.+.+..+
T Consensus       304 ~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n----s~~l~~~~~~I~e~  379 (815)
T KOG1820|consen  304 LKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN----STPLSKMSEAILEA  379 (815)
T ss_pred             ccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh----cccHHHHHHHHHHH
Confidence            56778888889999999999999986  344556677777 888999999999998888776    33455677888899


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           95 CTVEETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        95 ~~d~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      +++.++.+|..+..-+.......++    ....+.+.|.+....+|..-.||.++.+.+..+....|.+
T Consensus       380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~  448 (815)
T KOG1820|consen  380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE  448 (815)
T ss_pred             hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999988888888773    4556789999999999999999999999999999999987

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.0029  Score=52.25  Aligned_cols=170  Identities=15%  Similarity=0.156  Sum_probs=123.7

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc--c
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH--A   84 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~--~   84 (211)
                      .|...+..|.|+|=......+..+..++..=...  ..-.+++..+.+ +......|-++++..++++...++....  .
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l  168 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL  168 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3777788899999888888888887665433211  112234445555 8888888999999999999987764221  1


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----  159 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----  159 (211)
                      ..++..|-.=..+++..||+.|-++|..+.....+..+...++|..    ...+.++|..++.+++.....+|-.     
T Consensus       169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~----~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~  244 (334)
T KOG2933|consen  169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL----QHSNPRVRAKAALCFSRCVIRLGVLPVLLQ  244 (334)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH----hhhchhhhhhhhccccccceeccccchhhH
Confidence            2222333333456678999999999999999999988888888874    4456789999999999988887633     


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHH
Q 039154          160 LKTELRSIYTQLCQDDMPMVRRSA  183 (211)
Q Consensus       160 ~~~~l~~~~~~L~~D~~~~VR~aa  183 (211)
                      +-.++.+...+-+.|+-|.+|.++
T Consensus       245 ~~~dl~~a~~~~~~d~Lp~~~~~a  268 (334)
T KOG2933|consen  245 GSCDLSRAAQEQGSDKLPELREAA  268 (334)
T ss_pred             hHHHHHHHHHhhhcccccccccch
Confidence            345778888888889998888544

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0014  Score=59.79  Aligned_cols=110  Identities=15%  Similarity=0.194  Sum_probs=83.5

Q ss_pred             CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchh-hhhhhcCCChHHHHHHHHHHHhccccccCccccc
Q 039154            6 EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELI-PFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus         6 ~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~-p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      ..+..++.+...-+++|+..|..|++.++.+    +-+...+.+. |+.....|+++.||++++-....+-..=..-...
T Consensus        83 ~a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~  158 (734)
T KOG1061|consen   83 LAILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED  158 (734)
T ss_pred             HHHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc
Confidence            3445578888999999999999998887643    3444444444 4444489999999999988887765522223345


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE  119 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~  119 (211)
                      .-+++.|..+..|+++.|=..|+.+|..+.+.-..
T Consensus       159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence            67888999999999999999999999999887653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.23  E-value=0.0034  Score=50.82  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=12.4

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhh
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNL  187 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l  187 (211)
                      -++.+.+.++|+++.||..|..+|
T Consensus       252 ~~~vL~e~~~D~~~vv~esc~val  275 (289)
T KOG0567|consen  252 CVEVLKEYLGDEERVVRESCEVAL  275 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHH
Confidence            444455555555555555555444

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.011  Score=51.67  Aligned_cols=184  Identities=18%  Similarity=0.161  Sum_probs=121.0

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhCCcchh--hchhhh---hhh-cCCChHHHHHHHHHHHhccccccCc--cccccccc
Q 039154           17 ELKNDDIQLRLNSIRRLSTIARALGEERTP--KELIPF---LSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLL   88 (211)
Q Consensus        17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~--~~L~p~---l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~ll   88 (211)
                      .+.|.-++.|+.-+.-+   |...++....  ..+-..   +.+ ..|.+.-+|..++..|++.+.....  ..+.+.++
T Consensus       225 s~ts~~~~~ritd~Af~---ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l  301 (533)
T KOG2032|consen  225 SITSEKENGRITDIAFF---AELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL  301 (533)
T ss_pred             ccchhcccchHHHHHHH---HHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence            34444455565544444   4455554322  112222   223 7899999999999999999884221  12333444


Q ss_pred             -hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHH---hhcCCCchHHHhHHhHHHhhccCCChH----H
Q 039154           89 -PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKR---LAAGEWFTARVSACGLFHIAYPSAPDI----L  160 (211)
Q Consensus        89 -p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~---l~~d~~~~vR~~~a~~l~~l~~~~~~~----~  160 (211)
                       -++-.|..+.+..|...+++.|..+.++....++..+++|.-.+   +..|..-..|.++..+|+.+....|..    +
T Consensus       302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~F  381 (533)
T KOG2032|consen  302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFF  381 (533)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence             34566777778999999999999999999999998888887654   566778889999999999998887765    2


Q ss_pred             HHHHH---HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          161 KTELR---SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       161 ~~~l~---~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      .+...   ..|.--++|+.|-|=+||-..+    ..++|.....++..+|
T Consensus       382 te~v~k~~~~lllhl~d~~p~va~ACr~~~----~~c~p~l~rke~~~~~  427 (533)
T KOG2032|consen  382 TEQVKKRLAPLLLHLQDPNPYVARACRSEL----RTCYPNLVRKELYHLF  427 (533)
T ss_pred             HHHHHhccccceeeeCCCChHHHHHHHHHH----HhcCchhHHHHHHHHH
Confidence            32333   2234457899998877665444    3444444444444333

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0059  Score=55.80  Aligned_cols=152  Identities=18%  Similarity=0.153  Sum_probs=100.6

Q ss_pred             HHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154           14 LTDE-LKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (211)
Q Consensus        14 l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~   90 (211)
                      +|++ +.+.||.-|-.-+-.+  --.-.|..+  ....|+++-  ..|.+++||+++...||-+.-  ..    ...+|-
T Consensus       523 lI~el~~dkdpilR~~Gm~t~--alAy~GTgnnkair~lLh~a--VsD~nDDVrRaAVialGFVl~--~d----p~~~~s  592 (929)
T KOG2062|consen  523 LIKELLRDKDPILRYGGMYTL--ALAYVGTGNNKAIRRLLHVA--VSDVNDDVRRAAVIALGFVLF--RD----PEQLPS  592 (929)
T ss_pred             HHHHHhcCCchhhhhhhHHHH--HHHHhccCchhhHHHhhccc--ccccchHHHHHHHHHheeeEe--cC----hhhchH
Confidence            4444 5677888885443333  223445543  333333332  569999999999999998653  12    223444


Q ss_pred             Hhh-hccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHH
Q 039154           91 LET-LCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRS  166 (211)
Q Consensus        91 l~~-l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~  166 (211)
                      ..+ |.+.-++.||..++-+|+-.|.--|.....+.+-|    |.+|+.--||..++-.+.-+--+..++   ....+..
T Consensus       593 ~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLep----l~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk  668 (929)
T KOG2062|consen  593 TVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEP----LTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRK  668 (929)
T ss_pred             HHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhh----hhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence            444 44555899999999999999988777766555555    556988889999876666554333333   3567888


Q ss_pred             HHHHhcCCCCHHH
Q 039154          167 IYTQLCQDDMPMV  179 (211)
Q Consensus       167 ~~~~L~~D~~~~V  179 (211)
                      .|.+...|....+
T Consensus       669 ~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  669 QLEKVINDKHEDG  681 (929)
T ss_pred             HHHHHhhhhhhHH
Confidence            8888888877554

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.035  Score=49.49  Aligned_cols=183  Identities=14%  Similarity=0.112  Sum_probs=131.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--c-hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc--
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--R-TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA--   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~-~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~--   84 (211)
                      ++++..-|.++..++|.-+=.-++++-..+.+.  . -..+.++.+.. ++..+++.+..+..++..|++.-| .+..  
T Consensus       210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~  288 (675)
T KOG0212|consen  210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLY  288 (675)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhh
Confidence            788889998999999976655454444444332  2 34677888888 999999999999999999999544 3332  


Q ss_pred             -cccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHHH-----HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           85 -HVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDLV-----DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        85 -~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~~-----~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                       +.++..+-..+.|.+ .++++.+...=..+...++.+...     ..++..+.+...++....|.++.+-+..++...+
T Consensus       289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p  368 (675)
T KOG0212|consen  289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP  368 (675)
T ss_pred             hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence             223333333445554 478888776554555544443322     3567777888889999999999999999999998


Q ss_pred             hH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       158 ~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      .+   ..+.+++.+++-+.|++-+|---+..-+..+++.-
T Consensus       369 ~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~  408 (675)
T KOG0212|consen  369 GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS  408 (675)
T ss_pred             chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence            88   45778888888889999998887777777776643

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.17  E-value=0.0018  Score=52.41  Aligned_cols=79  Identities=20%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL  133 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l  133 (211)
                      +.+++...|..+|-.||++..    +.    =+|.+.+-+.|+  ++-||..|+++|+.++.-        ..++.+++.
T Consensus       196 l~~~SalfrhEvAfVfGQl~s----~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--------~~~~vL~e~  259 (289)
T KOG0567|consen  196 LADDSALFRHEVAFVFGQLQS----PA----AIPSLIKVLLDETEHPMVRHEAAEALGAIADE--------DCVEVLKEY  259 (289)
T ss_pred             cccchHHHHHHHHHHHhhccc----hh----hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--------HHHHHHHHH
Confidence            555566666666666666432    11    123333333333  345666666666666663        455556666


Q ss_pred             hcCCCchHHHhHHhHHH
Q 039154          134 AAGEWFTARVSACGLFH  150 (211)
Q Consensus       134 ~~d~~~~vR~~~a~~l~  150 (211)
                      ++|+.--||.+|...+.
T Consensus       260 ~~D~~~vv~esc~vald  276 (289)
T KOG0567|consen  260 LGDEERVVRESCEVALD  276 (289)
T ss_pred             cCCcHHHHHHHHHHHHH
Confidence            66666666666655554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.031  Score=53.61  Aligned_cols=188  Identities=15%  Similarity=0.124  Sum_probs=128.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhcccc--c---cCc---c
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIP--Y---VGG---V   81 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~--~---ig~---~   81 (211)
                      .+.+.+++-....|..+++-+..|-..++.+-  ....++|-+.= ..+.+..-|+.+-+.|..++.  .   .|.   +
T Consensus       701 ~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~  780 (1176)
T KOG1248|consen  701 SLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPAS  780 (1176)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchH
Confidence            44455556566667777777777777777432  23333444333 567777788888777776662  1   121   2


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhc---ChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQM---RESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l---~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                      ...+..++.+...+-.++..++...+-++..+...+   ..+..-..++..+..+....+-.+|.+|...+..++..++.
T Consensus       781 ~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe  860 (1176)
T KOG1248|consen  781 AILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE  860 (1176)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence            233444455444444444555544344444444443   23455566778888888889999999999999888888888


Q ss_pred             H----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhH
Q 039154          159 I----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLK  200 (211)
Q Consensus       159 ~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~  200 (211)
                      .    ..+.|+|..+.|.+|....||..+-.-|..++..+|.+.++
T Consensus       861 ~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe  906 (1176)
T KOG1248|consen  861 ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE  906 (1176)
T ss_pred             HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            7    56789999999999999999999999999999999998754

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.10  E-value=0.0055  Score=55.64  Aligned_cols=164  Identities=20%  Similarity=0.197  Sum_probs=91.1

Q ss_pred             HHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCCcch------hhchhhhhhh-c----CCChHHHHHHHHHHHhccc
Q 039154           11 IAVLTDELKND----DIQLRLNSIRRLSTIARALGEERT------PKELIPFLSA-N----NDDDDEVLLAMAEELGVFI   75 (211)
Q Consensus        11 l~~l~~~l~s~----~~~~R~~a~~~l~~ia~~lg~~~~------~~~L~p~l~~-~----~D~~~~VR~~~a~~L~~l~   75 (211)
                      ++.+.+.++++    .+..|..|+-.++.+++....+..      .++++|++.+ +    .+.+.+.+....++||++ 
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~-  473 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA-  473 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc-
Confidence            55555555554    344566666666666664433221      2456666554 2    233445566677777763 


Q ss_pred             cccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           76 PYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        76 ~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                         |-......+.|.+. --......+|..|+.+|..++... ++.+.+.++|.+..-.  ....+|.+|...+...-+.
T Consensus       474 ---g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i~~n~~--e~~EvRiaA~~~lm~t~P~  546 (574)
T smart00638      474 ---GHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD-PRKVQEVLLPIYLNRA--EPPEVRMAAVLVLMETKPS  546 (574)
T ss_pred             ---CChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcCCC
Confidence               33443334444433 111224567888888888776543 3445666666664433  3344777777766554333


Q ss_pred             CChHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 039154          156 APDILKTELRSIYTQLCQDDMPMVRRSAASNL  187 (211)
Q Consensus       156 ~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l  187 (211)
                           ...|..+...+-.|++..|+..+.+.|
T Consensus       547 -----~~~l~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      547 -----VALLQRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             -----HHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence                 235555556666677777777666554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.014  Score=53.42  Aligned_cols=179  Identities=16%  Similarity=0.184  Sum_probs=132.9

Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc
Q 039154            8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (211)
Q Consensus         8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~   86 (211)
                      ...+..+..++.|.-+..|..|++.+-. +-.+|  ..-..|.|-+.+ .+-.+-+.++-+=..+.+.++  +.++-.-.
T Consensus        12 k~ei~elks~l~s~~~~kr~~a~kkvIa-~Mt~G--~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~~   86 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQSKEKRKDAVKKVIA-YMTVG--KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAIL   86 (734)
T ss_pred             hhhchHHHHHhhhhhhhhHHHHHHHHHh-cCccC--cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHHh
Confidence            3456777888888878889888877621 23566  344678888888 555567788877777777665  23333334


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELR  165 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~  165 (211)
                      -.+.+..=++|+++.+|.-|+..+..+    +.+.+.+++..-+.+..+|...-||+.++.+..+++..-... ...-+.
T Consensus        87 avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~  162 (734)
T KOG1061|consen   87 AVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLV  162 (734)
T ss_pred             hhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchh
Confidence            456677777899999999999877543    445666777777777889999899999999988887665444 356788


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +.+..++.|++|.|=..|..++.++...-.
T Consensus       163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  163 DALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            888999999999999999999999988653

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.07  E-value=0.04  Score=49.59  Aligned_cols=157  Identities=15%  Similarity=0.100  Sum_probs=92.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      -..+++.-|. +...+.-|.+-++...+..+  ...++-+..+.. |.|++..||+.+...|+.+++.  .++....+..
T Consensus        25 y~~il~~~kg-~~k~K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaD   99 (556)
T PF05918_consen   25 YKEILDGVKG-SPKEKRLAAQFIPKFFKHFP--DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVAD   99 (556)
T ss_dssp             HHHHHHGGGS--HHHHHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHH
T ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHH
Confidence            4556677766 46666668888888776665  345666777777 9999999999999999999983  3566778889


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHh----HHHhhcc-CCC--hHHHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACG----LFHIAYP-SAP--DILKT  162 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~----~l~~l~~-~~~--~~~~~  162 (211)
                      +|.+|+.-++...+...=++|..+...-+...+...+-.....-.+|+  .+|.-+..    -+..+-. .+.  ++..+
T Consensus       100 vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de--~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~  177 (556)
T PF05918_consen  100 VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDE--QVRERALKFLREKLKPLKPELLTPQKEMEE  177 (556)
T ss_dssp             HHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-H--HHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCch--HHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence            999999988888888888888888776444333222211111112343  34443332    2222222 222  33556


Q ss_pred             HHHHHHHHhcCC
Q 039154          163 ELRSIYTQLCQD  174 (211)
Q Consensus       163 ~l~~~~~~L~~D  174 (211)
                      .+.....+.++|
T Consensus       178 ~i~~~ikkvL~D  189 (556)
T PF05918_consen  178 FIVDEIKKVLQD  189 (556)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHh
Confidence            677777777777

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.03  E-value=0.014  Score=47.58  Aligned_cols=135  Identities=10%  Similarity=0.068  Sum_probs=87.0

Q ss_pred             CChHHHHHHHHHHHhccccccCcccc--ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154           58 DDDDEVLLAMAEELGVFIPYVGGVEH--AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA  135 (211)
Q Consensus        58 D~~~~VR~~~a~~L~~l~~~ig~~~~--~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~  135 (211)
                      .++|.++..+.-.+++.+.+-...+.  ..-.++++..++.++++.||..|+.++..++..-.....-+..++.+.+...
T Consensus        24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~  103 (254)
T PF04826_consen   24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV  103 (254)
T ss_pred             CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence            46788999998999987764322222  2235789999999999999999999999997776544333444555555433


Q ss_pred             CCCc--hHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          136 GEWF--TARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       136 d~~~--~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      +..|  .+..+....+..+.-.-... ....-+|.|+.|+...+..+|.-+.+.|..++.
T Consensus       104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen  104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            3333  45556667776664332222 223345566666666666666666666665554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.024  Score=47.59  Aligned_cols=202  Identities=17%  Similarity=0.188  Sum_probs=126.1

Q ss_pred             CcchHHHHHHHhcCC-------CHHHHHH---HHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccc
Q 039154            7 PLYPIAVLTDELKND-------DIQLRLN---SIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFI   75 (211)
Q Consensus         7 ~~~pl~~l~~~l~s~-------~~~~R~~---a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~   75 (211)
                      .++||......|+-+       |.++|..   ++.-|..+-+...+-.....+.|-+.. +..++..|+.-++++++.+.
T Consensus        31 dlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcil  110 (524)
T KOG4413|consen   31 DLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCIL  110 (524)
T ss_pred             ccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHH
Confidence            456777777777654       3344544   445555555555554555667788888 88999999999999999998


Q ss_pred             cccCcccc-------ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-hHH--HHhhHHH-HHHhhcCCCchHHHh
Q 039154           76 PYVGGVEH-------AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-SDL--VDWFIPL-VKRLAAGEWFTARVS  144 (211)
Q Consensus        76 ~~ig~~~~-------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-~~~--~~~l~p~-i~~l~~d~~~~vR~~  144 (211)
                      +.......       -..|+|.+...+..++++|-.+|++++..++-.-.. +.+  ++.+-|. ...++.-.+--+|+-
T Consensus       111 EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvR  190 (524)
T KOG4413|consen  111 EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVR  190 (524)
T ss_pred             hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHH
Confidence            86553332       234678888888999999999999999998754211 111  0111111 122322223234555


Q ss_pred             HHhHHHhhccCCChH----HHHHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhh-CchhhHH-HHHHHHH
Q 039154          145 ACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLRKFAATV-EPAHLKT-DIMSIFE  208 (211)
Q Consensus       145 ~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~-~~~~~~~-~llp~~~  208 (211)
                      +-+++.+++..-...    .+.-|+..+..=++- ++-.||..|..-...++..- |.+.+.+ .++..++
T Consensus       191 VleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlic  261 (524)
T KOG4413|consen  191 VLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLIC  261 (524)
T ss_pred             HHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHH
Confidence            566666665543332    345677776665555 77899999998888887764 3443322 2444443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=96.99  E-value=0.0059  Score=55.89  Aligned_cols=161  Identities=18%  Similarity=0.247  Sum_probs=102.4

Q ss_pred             HHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCCc------------chhhchhhhhhh-cC----CChHHHHHHHHH
Q 039154           11 IAVLTDELKND----DIQLRLNSIRRLSTIARALGEE------------RTPKELIPFLSA-NN----DDDDEVLLAMAE   69 (211)
Q Consensus        11 l~~l~~~l~s~----~~~~R~~a~~~l~~ia~~lg~~------------~~~~~L~p~l~~-~~----D~~~~VR~~~a~   69 (211)
                      |+.+.+.++++    ++..|..|+-.++.++...-..            ...+++++.+.+ +.    ..+.+.+..+.+
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  512 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK  512 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence            44454555543    4567778888887777544333            355566666665 33    456678888999


Q ss_pred             HHhccccccCccccccccchHHhhhccch---hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHH
Q 039154           70 ELGVFIPYVGGVEHAHVLLPPLETLCTVE---ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSAC  146 (211)
Q Consensus        70 ~L~~l~~~ig~~~~~~~llp~l~~l~~d~---~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a  146 (211)
                      +||++    |-+    ..+|.+..++.+.   ...+|.+|+.+|.++... .++.+.+.++|++..-.++.  .+|.+|.
T Consensus       513 aLgN~----g~~----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-~~~~v~~~l~~I~~n~~e~~--EvRiaA~  581 (618)
T PF01347_consen  513 ALGNL----GHP----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-CPEKVREILLPIFMNTTEDP--EVRIAAY  581 (618)
T ss_dssp             HHHHH----T-G----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-H--HHHHHHH
T ss_pred             Hhhcc----CCc----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-CcHHHHHHHHHHhcCCCCCh--hHHHHHH
Confidence            99985    333    3455555555655   678999999999988444 46677888888887665543  4999998


Q ss_pred             hHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 039154          147 GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL  187 (211)
Q Consensus       147 ~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l  187 (211)
                      ..+...-+.     ...|..+...+-.|++..|+..+...|
T Consensus       582 ~~lm~~~P~-----~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  582 LILMRCNPS-----PSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHT--------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHhcCCC-----HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            777654232     346667777778899999999888766

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.97  E-value=0.0066  Score=56.65  Aligned_cols=149  Identities=13%  Similarity=0.183  Sum_probs=111.4

Q ss_pred             chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc---ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154           44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV---EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE  119 (211)
Q Consensus        44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~---~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~  119 (211)
                      +.=..+.|.+.+ ..-..-.+|..--..|..+...+..+   .....|+|+|-+-++-++..||.++...+..+....++
T Consensus       863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence            444566788877 44333334444444444443333211   13467899999999999999999999998887766655


Q ss_pred             --hHHHHhhHHHHHHhhcCCC---chHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          120 --SDLVDWFIPLVKRLAAGEW---FTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       120 --~~~~~~l~p~i~~l~~d~~---~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                        .+.-.+++|.+..+..|..   -.||..+..+++.+.+..+..    ++++.+..+.+-+.|+-..||+.|+..=++.
T Consensus       943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence              2335789999999999877   579999999999999877765    7899999999999999999999999876665


Q ss_pred             Hh
Q 039154          191 AA  192 (211)
Q Consensus       191 ~~  192 (211)
                      ..
T Consensus      1023 ~~ 1024 (1030)
T KOG1967|consen 1023 YM 1024 (1030)
T ss_pred             hh
Confidence            43

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=96.97  E-value=0.051  Score=45.90  Aligned_cols=177  Identities=18%  Similarity=0.189  Sum_probs=118.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-------hhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-------TPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGG   80 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-------~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~   80 (211)
                      .+..+...|-|+|.+....+.-.+..+   |..|.       ...-.+|-|.+ + ..+..+....+|=.|.+++.  |.
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~---LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaS--Gt  146 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKL---LSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS--GT  146 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHH---hccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhcc--Cc
Confidence            456778889999999888777666544   44432       23345688888 5 55667788889999999886  32


Q ss_pred             cccccc-----cchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hHH-H-HhhHHHHHHhhcCCC-chHHHhHHhHHH
Q 039154           81 VEHAHV-----LLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SDL-V-DWFIPLVKRLAAGEW-FTARVSACGLFH  150 (211)
Q Consensus        81 ~~~~~~-----llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~-~-~~l~p~i~~l~~d~~-~~vR~~~a~~l~  150 (211)
                      ......     -.|.|.+++.+.+..||+.++.+|+.++..-+.  +.+ . ..+-|.+.-+-++.. ...-..+.-.+.
T Consensus       147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS  226 (526)
T COG5064         147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS  226 (526)
T ss_pred             ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence            222222     369999999999999999999999999876433  111 1 123344433333322 122234455667


Q ss_pred             hhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          151 IAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       151 ~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .+|..-.++    .....+|++.+|..-.+++|---|+=++.=++
T Consensus       227 NlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls  271 (526)
T COG5064         227 NLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS  271 (526)
T ss_pred             HhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence            777765554    45788999999999999998887776664443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.94  E-value=0.023  Score=49.65  Aligned_cols=159  Identities=17%  Similarity=0.185  Sum_probs=116.9

Q ss_pred             HHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--------
Q 039154           12 AVLTDEL-KNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--------   79 (211)
Q Consensus        12 ~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--------   79 (211)
                      +.+.+.+ .+.+...|..++..+..|++.+=-.  ....+++..+.+ +.|  +++...+|+.++.+..-..        
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~  309 (415)
T PF12460_consen  232 DSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENH  309 (415)
T ss_pred             HHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcccc
Confidence            3333334 4667888889999999988865322  233455666666 444  8899999999988776421        


Q ss_pred             -------ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHH
Q 039154           80 -------GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLF  149 (211)
Q Consensus        80 -------~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l  149 (211)
                             ...+...++|.+.+..+..+..+|.....+|..+.+..+.+.+.   ..++|++.+-..-++..+|.++...+
T Consensus       310 a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL  389 (415)
T PF12460_consen  310 ANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL  389 (415)
T ss_pred             chhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                   13344567888888888777779999999999999999998765   45899998888888889999999999


Q ss_pred             HhhccCCChH---HHHHHHHHHHHhc
Q 039154          150 HIAYPSAPDI---LKTELRSIYTQLC  172 (211)
Q Consensus       150 ~~l~~~~~~~---~~~~l~~~~~~L~  172 (211)
                      ..+...-++-   +...++|.+++++
T Consensus       390 ~~~l~~~~~~i~~hl~sLI~~LL~ls  415 (415)
T PF12460_consen  390 KMILEEAPELISEHLSSLIPRLLKLS  415 (415)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHhcC
Confidence            8887766443   4567777777653

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.019  Score=54.91  Aligned_cols=155  Identities=16%  Similarity=0.108  Sum_probs=114.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHH-----HHhCCcc---hhhchhhhhhh-cCCChHHHHHH----HHHHHhccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIA-----RALGEER---TPKELIPFLSA-NNDDDDEVLLA----MAEELGVFIPY   77 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia-----~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~----~a~~L~~l~~~   77 (211)
                      |...+-.+|..|...|.++-+-|..|+     ...|.+.   ..++.++.+.. ..-+...++..    +...+-++.. 
T Consensus       740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~-  818 (1176)
T KOG1248|consen  740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN-  818 (1176)
T ss_pred             HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc-
Confidence            555556678889999999988887777     3445444   44555666666 44444444443    2222333333 


Q ss_pred             cCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh---hHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154           78 VGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW---FIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (211)
Q Consensus        78 ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~---l~p~i~~l~~d~~~~vR~~~a~~l~~l~~  154 (211)
                      +++......++..+.-++..+...||.+|+.-+..++..++..-+..+   ++|.+.+|.+|-.-.+|..+=.+|-.++.
T Consensus       819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            334556777888888899999999999999999999999999877654   79999999999999999999999999999


Q ss_pred             CCChHHHHHHHH
Q 039154          155 SAPDILKTELRS  166 (211)
Q Consensus       155 ~~~~~~~~~l~~  166 (211)
                      .+|.+....++|
T Consensus       899 kfg~~eLe~~~p  910 (1176)
T KOG1248|consen  899 KFGAEELESFLP  910 (1176)
T ss_pred             HhCHHHHHhhCH
Confidence            999874444444

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.85  E-value=0.068  Score=48.98  Aligned_cols=168  Identities=17%  Similarity=0.179  Sum_probs=99.7

Q ss_pred             CCCCcch--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhccccccC
Q 039154            4 VDEPLYP--IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVG   79 (211)
Q Consensus         4 ~~~~~~p--l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig   79 (211)
                      .||+++-  +..+..-+++-.|.+|+.|+..|....-.  +.+-.-.+...+..  -+|+++|||+++..++..      
T Consensus       119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d--~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v------  190 (892)
T KOG2025|consen  119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD--PKDEECPVVNLLKDLIQNDPSDEVRRAALSNISV------  190 (892)
T ss_pred             cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc------
Confidence            4555554  56677778899999999999988876421  11223344555555  369999999999776654      


Q ss_pred             ccccccccchHHhhhccchhhHHHHHHHH-HHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           80 GVEHAHVLLPPLETLCTVEETCMRDKAVE-SLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        80 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~-~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                          ...-+|.+.+-+.|-+..+|.-+.. .++++  .+....+. .-.-++.+-.+|..+.||.++...+..=--.+. 
T Consensus       191 ----dnsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~-krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-  262 (892)
T KOG2025|consen  191 ----DNSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSID-KRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-  262 (892)
T ss_pred             ----CcccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-
Confidence                2245677888889998888887764 44445  22222222 223345556678888888887766533111110 


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154          159 ILKTELRSIYTQLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       159 ~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~  189 (211)
                        ...+...+.+|=-....+|+..+..+|=.
T Consensus       263 --dgni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  263 --DGNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             --cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence              11344444444444444555555544433

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=96.73  E-value=0.01  Score=53.84  Aligned_cols=171  Identities=16%  Similarity=0.110  Sum_probs=106.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-----
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL--GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-----   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l--g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-----   82 (211)
                      +..+++.+++...... .+.+.+..+...+  +....-+.+.+++.. -....+.+|.++.-+++.++.......     
T Consensus       359 ~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~  437 (574)
T smart00638      359 LKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD  437 (574)
T ss_pred             HHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh
Confidence            7788888888775432 2333343433333  233445555566554 344577899999999998887332111     


Q ss_pred             -cccccchHHhhhcc----chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           83 -HAHVLLPPLETLCT----VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        83 -~~~~llp~l~~l~~----d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                       ..+.+.|.+...+.    ..+...+..++++|++++..-    ....+.|++. -..+.+-.+|..+...|..++...+
T Consensus       438 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p  512 (574)
T smart00638      438 FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP  512 (574)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc
Confidence             11345555544333    334455677788888766642    3344555554 1123445799999999998877777


Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       158 ~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~  189 (211)
                      ...++.++++|.+  .++.++||.+|+..+-.
T Consensus       513 ~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  542 (574)
T smart00638      513 RKVQEVLLPIYLN--RAEPPEVRMAAVLVLME  542 (574)
T ss_pred             hHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence            7777888888844  45668899999877643

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=96.68  E-value=0.012  Score=53.94  Aligned_cols=168  Identities=17%  Similarity=0.145  Sum_probs=98.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CC-cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc-------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL-GE-ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG-------   80 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l-g~-~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~-------   80 (211)
                      +..+++.+++.....-. +.+.+..++... -| +..-+.+.+++.. -...++.+|.++.-+++.++...-.       
T Consensus       397 v~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~  475 (618)
T PF01347_consen  397 VKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF  475 (618)
T ss_dssp             HHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence            66777777775543332 444444444333 22 2233344444443 3345678999999898887764321       


Q ss_pred             -----cccccccchHHhhhcc----chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC---CchHHHhHHhH
Q 039154           81 -----VEHAHVLLPPLETLCT----VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE---WFTARVSACGL  148 (211)
Q Consensus        81 -----~~~~~~llp~l~~l~~----d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~---~~~vR~~~a~~  148 (211)
                           ....+.+.+.+...+.    ..+..-+..++++|++++..        ..+|.+...+.+.   .-.+|..|...
T Consensus       476 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------~~i~~l~~~i~~~~~~~~~~R~~Ai~A  547 (618)
T PF01347_consen  476 CDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------ESIPVLLPYIEGKEEVPHFIRVAAIQA  547 (618)
T ss_dssp             -----SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------GGHHHHHTTSTTSS-S-HHHHHHHHHT
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------hhhHHHHhHhhhccccchHHHHHHHHH
Confidence                 1334445555554444    33457788889999988753        4556666666665   56899999999


Q ss_pred             HHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154          149 FHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       149 l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~  189 (211)
                      |..+........++.++++|.+--.  .++||.+|+..|-.
T Consensus       548 lr~~~~~~~~~v~~~l~~I~~n~~e--~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  548 LRRLAKHCPEKVREILLPIFMNTTE--DPEVRIAAYLILMR  586 (618)
T ss_dssp             TTTGGGT-HHHHHHHHHHHHH-TTS---HHHHHHHHHHHHH
T ss_pred             HHHHhhcCcHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHh
Confidence            9988666655567777777776443  46799999876643

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=96.65  E-value=0.011  Score=55.54  Aligned_cols=143  Identities=17%  Similarity=0.152  Sum_probs=102.8

Q ss_pred             hhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--------
Q 039154           49 LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--------  119 (211)
Q Consensus        49 L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--------  119 (211)
                      +-.++.. |.|.-+-||..+...+..+.+.-|+.. ...|+-...+-..|+..++|+++...+..=...++.        
T Consensus       473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l  551 (1529)
T KOG0413|consen  473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL  551 (1529)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence            3455666 999999999999999998888666543 335555555566677788888776655443222211        


Q ss_pred             -------------------hHHHHhhHHHHH-HhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHH
Q 039154          120 -------------------SDLVDWFIPLVK-RLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPM  178 (211)
Q Consensus       120 -------------------~~~~~~l~p~i~-~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~  178 (211)
                                         ..+++.++-+|. ++..|+--.||.+++.++...-.....+ ..+..+-++..||+|+...
T Consensus       552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vs  631 (1529)
T KOG0413|consen  552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVS  631 (1529)
T ss_pred             CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchH
Confidence                               112344555554 4555888999999999998887777666 3455588899999999999


Q ss_pred             HHHHHHHhhHHHHh
Q 039154          179 VRRSAASNLRKFAA  192 (211)
Q Consensus       179 VR~aaa~~l~~~~~  192 (211)
                      ||+.++.+|+++--
T Consensus       632 vrk~~~~Sltel~~  645 (1529)
T KOG0413|consen  632 VRKTGADSLTELML  645 (1529)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0084  Score=53.56  Aligned_cols=136  Identities=21%  Similarity=0.192  Sum_probs=93.4

Q ss_pred             hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHH
Q 039154           51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL  129 (211)
Q Consensus        51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~  129 (211)
                      -++.+ ..|.++..|..-+-.++.  .++|.. ....+-.+|.--.+|.++.||.+|+-+|+-+|-.-     .+.+...
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~al--Ay~GTg-n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~t  590 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLAL--AYVGTG-NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGT  590 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHH--HHhcCC-cchhHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHH
Confidence            34555 667777777655444432  123321 12223333444468899999999998888776542     2344445


Q ss_pred             HHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          130 VKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      +.-|+++-++.||+..|..++-.|..-|..   .-..++..|..|...-||++|.-.++-+.-...++
T Consensus       591 velLs~shN~hVR~g~AvaLGiacag~G~~---~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         591 VELLSESHNFHVRAGVAVALGIACAGTGDK---VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             HHHhhhccchhhhhhhHHHhhhhhcCCccH---HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence            555677778999999999999999988876   45566777899999999999998888776665553

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=96.46  E-value=0.17  Score=45.86  Aligned_cols=178  Identities=15%  Similarity=0.127  Sum_probs=124.2

Q ss_pred             HHHhcCCCHHHHHHHHHHH---HHHHHHhCCcchhhchhhhhhh--c----CCChHHHHHHHHHHHhccccccCc---cc
Q 039154           15 TDELKNDDIQLRLNSIRRL---STIARALGEERTPKELIPFLSA--N----NDDDDEVLLAMAEELGVFIPYVGG---VE   82 (211)
Q Consensus        15 ~~~l~s~~~~~R~~a~~~l---~~ia~~lg~~~~~~~L~p~l~~--~----~D~~~~VR~~~a~~L~~l~~~ig~---~~   82 (211)
                      -.+++..+++.|.-++...   .+.+.-.|. ..++++......  .    ...+..++++++..+..+...+..   .-
T Consensus       337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i-~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~  415 (678)
T KOG1293|consen  337 CASLAASDEKYRLILLNETLILNHLEYGLEI-SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL  415 (678)
T ss_pred             HHHHhhcchhhhHHHhhhhhhhhhhhhhcch-hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456677777777665443   233333332 234455544332  2    235667899999999988886531   12


Q ss_pred             cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      ....+...+.+++.|++..|...+..++.++.-.+++   ..+.+-.+..+.++..+..+.+|..+...+-.+.-.....
T Consensus       416 ~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~  495 (678)
T KOG1293|consen  416 KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE  495 (678)
T ss_pred             ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence            2334555566677999999999999999999988876   4566778888999999999999988887776664444433


Q ss_pred             -----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          160 -----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       160 -----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                           ..+-.......+++|++|.|...|.+-+.++..-
T Consensus       496 ~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  496 EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence                 2344456677889999999999999999888653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=0.04  Score=52.46  Aligned_cols=167  Identities=13%  Similarity=0.056  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc----ccccccchHHhhhcc
Q 039154           26 RLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV----EHAHVLLPPLETLCT   96 (211)
Q Consensus        26 R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~----~~~~~llp~l~~l~~   96 (211)
                      |+.|+..|+..- .+|+=    ...--++||+.+ +|....|.|-.++--+..+..+ .+.    -.++..-..+...+.
T Consensus       487 RlRAL~LL~RFL-DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  487 RLRALVLLARFL-DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHh-ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEec
Confidence            555655554331 23331    123456899999 9999999999888777766552 211    111111112222223


Q ss_pred             c-h--hhHHHHHHHHHHHHHHhhcCh--hHH-HHhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChH----HHHHHH
Q 039154           97 V-E--ETCMRDKAVESLCRIGSQMRE--SDL-VDWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI----LKTELR  165 (211)
Q Consensus        97 d-~--~~~VR~~a~~~l~~l~~~l~~--~~~-~~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~----~~~~l~  165 (211)
                      + .  .++=|..|+-.|..++..+..  +.+ ...++.......+|+ .|-.|.=+|-+++.+-+.....    .+..-.
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            3 1  247788999999999888644  322 344666667777775 6889999999999998877665    345566


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      .-+..++.|+.|+||.||..+|+.|....
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence            77788999999999999999999999963

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=96.41  E-value=0.15  Score=51.98  Aligned_cols=191  Identities=10%  Similarity=0.046  Sum_probs=120.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCc------chh-hchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccc
Q 039154           19 KNDDIQLRLNSIRRLSTIARALGEE------RTP-KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLL   88 (211)
Q Consensus        19 ~s~~~~~R~~a~~~l~~ia~~lg~~------~~~-~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~ll   88 (211)
                      -+.|..++..|+..|..+|..+-..      ... .-|-|+-.- ....+.+||..+.+.+.++...-+.  ..-|..++
T Consensus      1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076       1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred             CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence            3557888999999998888655442      123 344465443 3455678999999999888775443  22477788


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcCh------hHHHHhhHHHHHHhhcCCCc-h--------HHHhHHhHHHh--
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRE------SDLVDWFIPLVKRLAAGEWF-T--------ARVSACGLFHI--  151 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~------~~~~~~l~p~i~~l~~d~~~-~--------vR~~~a~~l~~--  151 (211)
                      .+|..-+.+++..+=..|.+++..+...+-.      ......++..+.++++.... .        .|. ++.-+..  
T Consensus      1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~-~~~~La~~~ 1305 (1780)
T PLN03076       1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF-CATKLAEGD 1305 (1780)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH-HHHHHHhcc
Confidence            8888777888877778888888877655221      24445566666666654321 1        111 1111100  


Q ss_pred             hc---c-----------------------CCChH-HHHHHHHHHHHh---cCCCCHHHHHHHHHhhHHHHhhhCchh---
Q 039154          152 AY---P-----------------------SAPDI-LKTELRSIYTQL---CQDDMPMVRRSAASNLRKFAATVEPAH---  198 (211)
Q Consensus       152 l~---~-----------------------~~~~~-~~~~l~~~~~~L---~~D~~~~VR~aaa~~l~~~~~~~~~~~---  198 (211)
                      +.   .                       ..+.+ ....|+|++..|   +.|+.++||..|.+.|-.+....|...   
T Consensus      1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076       1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred             ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence            00   0                       00111 223466666655   889999999999999988888877532   


Q ss_pred             -----hHHHHHHHHHhh
Q 039154          199 -----LKTDIMSIFEDL  210 (211)
Q Consensus       199 -----~~~~llp~~~~L  210 (211)
                           +..-|.|+|..+
T Consensus      1386 ~W~~if~~VLFPIFd~l 1402 (1780)
T PLN03076       1386 LWERVFESVLFPIFDYV 1402 (1780)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence                 455688888654

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=96.40  E-value=0.0056  Score=41.96  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             CCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154          136 GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM--PMVRRSAASNLRKFAATVEPAHLKTDIMSIFE  208 (211)
Q Consensus       136 d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~  208 (211)
                      |+.|..|..+|.++..++..++..   .+..+...|.+.+.|+.  ...+-.|...|..    +|++.+..-++|-++
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~----lG~~~vr~~ilP~l~   90 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSA----LGPEAVRALILPNLK   90 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----HHHHHHHHhhccCcC
Confidence            567899999999999998888865   57788888888888766  4566666666644    377888888888654

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.40  E-value=0.1  Score=51.39  Aligned_cols=140  Identities=15%  Similarity=0.098  Sum_probs=104.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      |..++--+..+-+..|..|++-|..|+.+=+.-.++.+.---+.. ..|....||-+|.+-+|.++-..  ++.......
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--~e~~~qyY~  895 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--PELIFQYYD  895 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc--HHHHHHHHH
Confidence            667777787777999999999999987655544566666666666 89999999999999999876532  333333444


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA  152 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l  152 (211)
                      -+.+-..|....||..+++.+.++|...+.=.....++--+.+-.+|+.-.+...+++.|-++
T Consensus       896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            455666799999999999999999999876444444444455556787777888888888776

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.063  Score=51.13  Aligned_cols=147  Identities=17%  Similarity=0.158  Sum_probs=90.4

Q ss_pred             chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchH-HhhhccchhhHHHHHHHHHHHHHHhh-cChhHHHH
Q 039154           48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCMRDKAVESLCRIGSQ-MRESDLVD  124 (211)
Q Consensus        48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~-l~~~~~~~  124 (211)
                      .++-.+.+ +.|.+-.||-++|+-+|.+..-+.. +.....+.. +.-+.--+++..-..|+-+|++++.. +-.-..-.
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~  419 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE  419 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence            34444555 6777778888888888877765542 222222222 22122222355555777777777654 11222234


Q ss_pred             hhHHHHHHhhc-C-------CCchHHHhHHhHHHhhccCCChH----HHHHH-HHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          125 WFIPLVKRLAA-G-------EWFTARVSACGLFHIAYPSAPDI----LKTEL-RSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       125 ~l~p~i~~l~~-d-------~~~~vR~~~a~~l~~l~~~~~~~----~~~~l-~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .++|.+.+-.+ |       ....||-++|+..=+++...++.    +...| .-.+...+-|++-.+|++|+.++.+.+
T Consensus       420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V  499 (1133)
T KOG1943|consen  420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV  499 (1133)
T ss_pred             HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence            56666654332 2       23579999999999998887766    22222 234445567999999999999999887


Q ss_pred             hhhC
Q 039154          192 ATVE  195 (211)
Q Consensus       192 ~~~~  195 (211)
                      -..|
T Consensus       500 GR~~  503 (1133)
T KOG1943|consen  500 GRQG  503 (1133)
T ss_pred             ccCC
Confidence            6644

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.28  Score=45.99  Aligned_cols=180  Identities=18%  Similarity=0.201  Sum_probs=130.1

Q ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCcc-
Q 039154           11 IAVLTDELKND-DIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGGV-   81 (211)
Q Consensus        11 l~~l~~~l~s~-~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~~-   81 (211)
                      ++.++..|+.. |+...++++..+.++- .+|.|.     -.+.++|-+.. ++++ +.++..-||.+|..+.+++... 
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L-~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEML-SMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHH-hhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            67889999988 8999999999888875 455554     34677888888 6665 6889999999999999977532 


Q ss_pred             --ccccccchH-HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh----hHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154           82 --EHAHVLLPP-LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW----FIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (211)
Q Consensus        82 --~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~----l~p~i~~l~~d~~~~vR~~~a~~l~~l~~  154 (211)
                        -..+.-+|. +.+|..-+--.|-+.+..+|.+|...-+...++.-    ++.++-=++.    .+-..+...-..+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi----~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI----HAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence              122345566 57788888889999999999999999887655421    2222221111    122333444445666


Q ss_pred             CCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          155 SAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       155 ~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      .+..+   +.-+-+|++-.+++-++..+=..++-++..++..+-
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            66665   677889999999998888888888888888888764

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.19  E-value=0.018  Score=56.26  Aligned_cols=161  Identities=13%  Similarity=0.056  Sum_probs=106.4

Q ss_pred             hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH
Q 039154           47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV  123 (211)
Q Consensus        47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~  123 (211)
                      .-++|.+.. +.-++.++|..+..-+|.+...-+..  +.-..++..+-.-+.|-...||.+++++.......-+.-.-.
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~  337 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA  337 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence            345688888 88999999999988888776643321  223344555555667888999999999988877664333333


Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh-h--------
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT-V--------  194 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~-~--------  194 (211)
                      ..+.-.+.....|...++|.-++.....+... .-.+...++......+.|.-|.||+-|.+.|.++-+. +        
T Consensus       338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~-~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k  416 (1266)
T KOG1525|consen  338 STILLALRERDLDEDVRVRTQVVIVACDVMKF-KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGK  416 (1266)
T ss_pred             HHHHHHHHhhcCChhhhheeeEEEEEeehhHh-hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence            34444455566777777776554332222111 0112223777888889999999999999999999884 1        


Q ss_pred             ----CchhhHHHHHHHHH
Q 039154          195 ----EPAHLKTDIMSIFE  208 (211)
Q Consensus       195 ----~~~~~~~~llp~~~  208 (211)
                          .-+|+..+|+-++.
T Consensus       417 ~~t~~~swIp~kLL~~~y  434 (1266)
T KOG1525|consen  417 EITPPFSWIPDKLLHLYY  434 (1266)
T ss_pred             cccccccccchhHHhhHh
Confidence                12577777776653

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.068  Score=47.99  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=103.0

Q ss_pred             HHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154           14 LTDE-LKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (211)
Q Consensus        14 l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~   90 (211)
                      +|++ +-|+|+.-|-.-+-.+  -..-.|..+  ....++++-  ..|.+++||+++.-+||-++=  .   ....+...
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~--alAy~GTgn~~vv~~lLh~a--vsD~nDDVrRAAViAlGfvc~--~---D~~~lv~t  590 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSL--ALAYVGTGNLGVVSTLLHYA--VSDGNDDVRRAAVIALGFVCC--D---DRDLLVGT  590 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHH--HHHHhcCCcchhHhhhheee--cccCchHHHHHHHHheeeeEe--c---CcchhhHH
Confidence            4444 5677788885444333  223455543  233333332  468899999999999998763  1   12244455


Q ss_pred             HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHH
Q 039154           91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSI  167 (211)
Q Consensus        91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~  167 (211)
                      ++-|.+..+..||...+-+|+-.|.--+....    ...+..|..|..--||.+++-..+-+.-+..++   ..+.+..-
T Consensus       591 velLs~shN~hVR~g~AvaLGiacag~G~~~a----~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~  666 (926)
T COG5116         591 VELLSESHNFHVRAGVAVALGIACAGTGDKVA----TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKK  666 (926)
T ss_pred             HHHhhhccchhhhhhhHHHhhhhhcCCccHHH----HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHH
Confidence            55566666899999999999988887766544    445667788999889999988877776665555   46778888


Q ss_pred             HHHhcCCCCH
Q 039154          168 YTQLCQDDMP  177 (211)
Q Consensus       168 ~~~L~~D~~~  177 (211)
                      |.++..|...
T Consensus       667 f~~vI~~Khe  676 (926)
T COG5116         667 FNRVIVDKHE  676 (926)
T ss_pred             HHHHHhhhhH
Confidence            8888887654

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.11  E-value=0.2  Score=38.74  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHH
Q 039154           25 LRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMR  103 (211)
Q Consensus        25 ~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR  103 (211)
                      +|+.|+.-|..+++..++    ..+..+... +-|.                 ...+.   ..-.+++.-++.|.+..||
T Consensus         2 vR~~Al~~L~al~k~~~~----r~l~~yW~~llP~~-----------------~~~~~---~~~~sLlt~il~Dp~~kvR   57 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDK----RSLFGYWPALLPDS-----------------VLQGR---PATPSLLTCILKDPSPKVR   57 (182)
T ss_pred             hhHHHHHHHHHHHHhcCC----ceeHhhHHHHCCCC-----------------CCcCC---CCCcchhHHHHcCCchhHH
Confidence            688889999888887764    344555555 3333                 01111   1223445667788889999


Q ss_pred             HHHHHHHHHHHhhcCh-----hH----------HHHhhHHH--------HHHhhcCCCchHHHhHHhHHHhhccCCC---
Q 039154          104 DKAVESLCRIGSQMRE-----SD----------LVDWFIPL--------VKRLAAGEWFTARVSACGLFHIAYPSAP---  157 (211)
Q Consensus       104 ~~a~~~l~~l~~~l~~-----~~----------~~~~l~p~--------i~~l~~d~~~~vR~~~a~~l~~l~~~~~---  157 (211)
                      .+|+..+..+.+...+     ++          ....+-..        +..+....+..+-..+.+++..+....+   
T Consensus        58 ~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r  137 (182)
T PF13251_consen   58 AAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR  137 (182)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh
Confidence            9998888888776422     00          01111111        1223334455566666777776655544   


Q ss_pred             --hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          158 --DILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       158 --~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                        .+....++.....++.+.++.||-++...++.+...-++
T Consensus       138 L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~~  178 (182)
T PF13251_consen  138 LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQPP  178 (182)
T ss_pred             cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCC
Confidence              446677777788888899999999999999999887553

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.16  Score=46.69  Aligned_cols=178  Identities=12%  Similarity=0.010  Sum_probs=94.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l   91 (211)
                      .+...|.|..+-+|..|+..+..+--..+  ..-..-+|-+.+ +.|++|.|.-++...+=.+++-  .+...-.+-|.|
T Consensus       148 Dv~tLL~sskpYvRKkAIl~lykvFLkYP--eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK--nPknyL~LAP~f  223 (877)
T KOG1059|consen  148 DVFTLLNSSKPYVRKKAILLLYKVFLKYP--EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK--NPQNYLQLAPLF  223 (877)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHhhh--HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh--CCcccccccHHH
Confidence            34555666666677777766666643222  222333455555 6777777766666666555552  122223455665


Q ss_pred             hhhccch-hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCch-HHHhHHhHHH--hhccCCChH--HHHHHH
Q 039154           92 ETLCTVE-ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFT-ARVSACGLFH--IAYPSAPDI--LKTELR  165 (211)
Q Consensus        92 ~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~-vR~~~a~~l~--~l~~~~~~~--~~~~l~  165 (211)
                      -+++.+. +-.+=...++-++.+...-+  -..+.++|-+..+.+..+.. +-+-|.....  .+..+.+..  ...--+
T Consensus       224 fkllttSsNNWmLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCv  301 (877)
T KOG1059|consen  224 YKLLVTSSNNWVLIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCV  301 (877)
T ss_pred             HHHHhccCCCeehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHH
Confidence            5554433 33333344444443333222  12344555555565554421 1111222211  222333333  223344


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      .-+..++.|+++..|.-..-+++++++..+.
T Consensus       302 qKLr~fiedsDqNLKYlgLlam~KI~ktHp~  332 (877)
T KOG1059|consen  302 QKLRIFIEDSDQNLKYLGLLAMSKILKTHPK  332 (877)
T ss_pred             HHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence            5566789999999999999999999997664

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=96.04  E-value=0.35  Score=37.87  Aligned_cols=162  Identities=16%  Similarity=0.054  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHH-HHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-h
Q 039154           23 IQLRLNSIRRLSTI-ARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-E   99 (211)
Q Consensus        23 ~~~R~~a~~~l~~i-a~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~   99 (211)
                      ..+|.-.++.+.+= .+.++..   +....+..+ ..++..|.|..++.-++...+...     ...++.+..+..+- +
T Consensus        28 ~GV~~p~lr~lak~~~~~~~~~---~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~   99 (213)
T PF08713_consen   28 LGVRTPDLRKLAKDIYKELKLS---EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDN   99 (213)
T ss_dssp             ----HHHHHHHHHHHHHHHCTS---HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCC
T ss_pred             cCcCcHHHHHHHHHHHhhcccc---hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCc
Confidence            45555554444321 2233333   445555666 677788888888887766443222     22455666666644 4


Q ss_pred             hHHHHH-HHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHH
Q 039154          100 TCMRDK-AVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM  178 (211)
Q Consensus       100 ~~VR~~-a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~  178 (211)
                      +.+-.. |.+.+..+...-      ....+.+.+++++++.-+|.++.-.+...+..   ...+.++.....+..|++.-
T Consensus       100 W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~  170 (213)
T PF08713_consen  100 WATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYY  170 (213)
T ss_dssp             HHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HH
T ss_pred             chhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHH
Confidence            544433 345555554332      66788888998888855555554443333333   44678888989999999999


Q ss_pred             HHHHHHHhhHHHHhhhCchhhHHH
Q 039154          179 VRRSAASNLRKFAATVEPAHLKTD  202 (211)
Q Consensus       179 VR~aaa~~l~~~~~~~~~~~~~~~  202 (211)
                      ||++++-.|.++++. .|+.+.+.
T Consensus       171 vq~ai~w~L~~~~~~-~~~~v~~~  193 (213)
T PF08713_consen  171 VQKAIGWALREIGKK-DPDEVLEF  193 (213)
T ss_dssp             HHHHHHHHHHHHCTT--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-CHHHHHHH
Confidence            999999999999886 45444433

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.01  E-value=0.24  Score=44.71  Aligned_cols=150  Identities=15%  Similarity=0.156  Sum_probs=101.7

Q ss_pred             chhhchhhhhhh-cCCChHHHHHHHHHHHhccccc-cCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--
Q 039154           44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPY-VGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--  119 (211)
Q Consensus        44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~-ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--  119 (211)
                      +....++|++.. +.|.-++|-..+|.++-.++.- +| ++..+.....|..+++......|-+|+..|..++.+-+.  
T Consensus       260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence            566788899999 8999999999999988876653 34 344556667788888888888899999999888877543  


Q ss_pred             -------------------------------hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154          120 -------------------------------SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus       120 -------------------------------~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                                                     ++.-+.++..|..+.+|-+-.-+..+...+..++..++.. +...+..+
T Consensus       339 ~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~s~l~FL  417 (898)
T COG5240         339 SVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KLSYLDFL  417 (898)
T ss_pred             eecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HHHHHHHH
Confidence                                           2223446667777777766555666666666666666655 22222222


Q ss_pred             H-HhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          169 T-QLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       169 ~-~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      . .||+.-..+-++++...+..+.+..+
T Consensus       418 ~~~L~~eGg~eFK~~~Vdaisd~~~~~p  445 (898)
T COG5240         418 GSSLLQEGGLEFKKYMVDAISDAMENDP  445 (898)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhhCc
Confidence            2 34444456667777776666666553

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.053  Score=50.14  Aligned_cols=116  Identities=18%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHH
Q 039154           51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL  129 (211)
Q Consensus        51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~  129 (211)
                      ..+.+ ++..+..|--.|.-.||+    +++++....+.|-.+++++..++-||.+|+-+..++..+.+.-.  ++++|-
T Consensus       110 NslknDL~s~nq~vVglAL~alg~----i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f~~~  183 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGN----ICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHFVIA  183 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhc----cCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHhhHH
Confidence            33444 566666665666666666    44577788999999999999999999999999999998876543  666677


Q ss_pred             HHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhc
Q 039154          130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLC  172 (211)
Q Consensus       130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~  172 (211)
                      ..++.++....|=.+....+-.+|..-...  +.+++.+-|+.-+
T Consensus       184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL  228 (866)
T KOG1062|consen  184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL  228 (866)
T ss_pred             HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            777777777777666666666666653333  2333444444443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.058  Score=49.96  Aligned_cols=164  Identities=14%  Similarity=0.203  Sum_probs=110.4

Q ss_pred             hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChh--H
Q 039154           45 TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRES--D  121 (211)
Q Consensus        45 ~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~--~  121 (211)
                      ..+.++|-+....+...-.||-+|--+|..+.+--..+....+.-.+-++++|. +..||.+++.++..+.......  .
T Consensus       485 l~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds  564 (978)
T KOG1993|consen  485 LQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS  564 (978)
T ss_pred             HHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence            445556666544556677999999999988774444555556666788899999 4679999999999999886543  2


Q ss_pred             HHHh---hHHHHHHhhcC-CCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcC--CCCHHHHHHHHHhhHHHHh
Q 039154          122 LVDW---FIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ--DDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       122 ~~~~---l~p~i~~l~~d-~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~--D~~~~VR~aaa~~l~~~~~  192 (211)
                      +..+   +.-.+.++.+. .....|..+...++.+...+++.   +...++.++-.|-+  .+++..|.+....+.+++.
T Consensus       565 Flp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~  644 (978)
T KOG1993|consen  565 FLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVN  644 (978)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHH
Confidence            2211   11112222221 23456777877777777666654   34455555444433  3679999999999999999


Q ss_pred             hhCc--hhhHHHHHHHHH
Q 039154          193 TVEP--AHLKTDIMSIFE  208 (211)
Q Consensus       193 ~~~~--~~~~~~llp~~~  208 (211)
                      .+|.  .....-++|++.
T Consensus       645 alg~qS~~~~~fL~pVIe  662 (978)
T KOG1993|consen  645 ALGAQSFEFYPFLYPVIE  662 (978)
T ss_pred             HhccCCccchHHHHHHHH
Confidence            9994  466777888774

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=0.12  Score=47.99  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      .+.+++.|+|.|.-+--.|...++.   ..++| ...+|.|.+.+ ++..++.||+-|+-+...+....  ++..+.+++
T Consensus       109 tNslknDL~s~nq~vVglAL~alg~---i~s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~  182 (866)
T KOG1062|consen  109 TNSLKNDLNSSNQYVVGLALCALGN---ICSPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVI  182 (866)
T ss_pred             HHHHHhhccCCCeeehHHHHHHhhc---cCCHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhH
Confidence            4566777888776555455555544   34444 45689999999 99999999999988887766532  334455555


Q ss_pred             HHhhhccchhhHHH
Q 039154           90 PLETLCTVEETCMR  103 (211)
Q Consensus        90 ~l~~l~~d~~~~VR  103 (211)
                      ...+++.+.+.-|=
T Consensus       183 ~~~~lL~ek~hGVL  196 (866)
T KOG1062|consen  183 AFRKLLCEKHHGVL  196 (866)
T ss_pred             HHHHHHhhcCCcee
Confidence            55555555555553

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.83  E-value=0.029  Score=53.79  Aligned_cols=110  Identities=14%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             CccccccccchHHhhhccch----hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154           79 GGVEHAHVLLPPLETLCTVE----ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (211)
Q Consensus        79 g~~~~~~~llp~l~~l~~d~----~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~  154 (211)
                      |.......+.|++.++++..    ++.+|.+|.-+|.++.. ++.+.+..++--++.-|.+.++.++|.++.-.++.++-
T Consensus       912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence            33556667789999988543    57899999999998754 35566666665566667779999999999888888866


Q ss_pred             CCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       155 ~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      .++. ..+.+-+.+..-++|+++.||++|..-+..+
T Consensus       991 ~fpn-lie~~T~~Ly~rL~D~~~~vRkta~lvlshL 1025 (1251)
T KOG0414|consen  991 RFPN-LIEPWTEHLYRRLRDESPSVRKTALLVLSHL 1025 (1251)
T ss_pred             hccc-ccchhhHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            6554 2456677788889999999999998876544

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.80  E-value=0.082  Score=40.02  Aligned_cols=143  Identities=13%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             hchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccccccchHHhhh-ccchhhHHHHHHHHHHHHHHhh-cChhHH
Q 039154           47 KELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL-CTVEETCMRDKAVESLCRIGSQ-MRESDL  122 (211)
Q Consensus        47 ~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~-l~~~~~  122 (211)
                      -+|++.+.+ + .+.++.+|+++.+.+|.++. +.+-.++ .+-.-...- ..+.+......   .+...... -..|..
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~ee~y   83 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDI---SLPMMGISPSSEEYY   83 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhh---HHhhccCCCchHHHH
Confidence            467788888 4 46679999999999999766 3332221 110000000 01111111111   11111111 122334


Q ss_pred             HHhhHHHHHHhhcCCCch-HHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          123 VDWFIPLVKRLAAGEWFT-ARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       123 ~~~l~p~i~~l~~d~~~~-vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      ....+..+.+..+|++.. ...++...+..++...|..   +..+++|.|++.++......|....+.|..++..+
T Consensus        84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv  159 (160)
T PF11865_consen   84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV  159 (160)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            445566667777777742 3334555555555545544   78999999999999888899999999999988765

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.79  E-value=0.32  Score=45.03  Aligned_cols=186  Identities=15%  Similarity=0.203  Sum_probs=124.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-ccccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-GVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~~~ll   88 (211)
                      =..+++.|++.+.++++++++.+  |+..+.-+...+.+.-++.- +--.+-+.++-.---|.-+=+.=+ |.-..+.||
T Consensus        22 ~~~ik~~Lek~~~~~KIeamK~i--i~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMIL   99 (948)
T KOG1058|consen   22 EDEIKEKLEKGDDEVKIEAMKKI--IALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMIL   99 (948)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHH--HHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHH
Confidence            35688889999999999999987  44566667777766666665 666667776666555544333322 222222332


Q ss_pred             --hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHH
Q 039154           89 --PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTEL  164 (211)
Q Consensus        89 --p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l  164 (211)
                        ..+.+=+++++..||-....    +.-++...++-+-++|.+..-.+.+..-||+.+.-.+..++.....=  ...++
T Consensus       100 vcna~RkDLQHPNEyiRG~TLR----FLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeL  175 (948)
T KOG1058|consen  100 VCNAYRKDLQHPNEYIRGSTLR----FLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPEL  175 (948)
T ss_pred             HHHHHhhhccCchHhhcchhhh----hhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHH
Confidence              44556667788889976654    34445555677889999999999999899999988888887762211  23445


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154          165 RSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE  208 (211)
Q Consensus       165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~  208 (211)
                      +.-|  |..+.+|..++.|.-.|    ...+||....++...+.
T Consensus       176 i~~f--L~~e~DpsCkRNAFi~L----~~~D~ErAl~Yl~~~id  213 (948)
T KOG1058|consen  176 IESF--LLTEQDPSCKRNAFLML----FTTDPERALNYLLSNID  213 (948)
T ss_pred             HHHH--HHhccCchhHHHHHHHH----HhcCHHHHHHHHHhhHh
Confidence            4443  56788888888888776    44566666555554443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.77  E-value=0.098  Score=50.34  Aligned_cols=177  Identities=15%  Similarity=0.060  Sum_probs=109.5

Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c----CCChHHHHHHHHHHHhccccccCccc
Q 039154            8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N----NDDDDEVLLAMAEELGVFIPYVGGVE   82 (211)
Q Consensus         8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~----~D~~~~VR~~~a~~L~~l~~~ig~~~   82 (211)
                      .++-..++..-.+||...   ++..+.+---..|+...-..+.|++.+ |    .-.+|+.+.+|.-+|+.+.- ++.+.
T Consensus       882 ~~~e~dlig~tseDd~~d---~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~f  957 (1251)
T KOG0414|consen  882 FTVELDLIGGTSEDDLAD---LISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEF  957 (1251)
T ss_pred             CCccccccCCCcchhHHH---HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHH
Confidence            334444444444444432   333444444456777778888999998 7    45679999999999999987 55444


Q ss_pred             cccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH
Q 039154           83 HAHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (211)
Q Consensus        83 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~  161 (211)
                      + ..=+|.|....+ .+++.||..++-+++.++=.++.-.  +-.-+.+.+...|++..||..|.-.+.-+...--- -.
T Consensus       958 c-es~l~llftimeksp~p~IRsN~VvalgDlav~fpnli--e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi-KV 1033 (1251)
T KOG0414|consen  958 C-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI--EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI-KV 1033 (1251)
T ss_pred             H-HHHHHHHHHHHhcCCCceeeecchheccchhhhccccc--chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh-Hh
Confidence            3 444555555444 7789999999999999887775411  11223344556888888888887665544211000 01


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      +--++-...++.|+++++|--|=.-+.++.+
T Consensus      1034 KGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1034 KGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             cccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            1224445667778888888776644444443

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.76  E-value=0.014  Score=57.09  Aligned_cols=142  Identities=18%  Similarity=0.167  Sum_probs=89.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      +..|..+|.+++..+|..|++.++.+-..-+...  +-..+...+.. +.|..++||..+.+...+..-.=........+
T Consensus       261 ip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~  340 (1266)
T KOG1525|consen  261 IPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTI  340 (1266)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHH
Confidence            5567778999999999999999988765444332  23445555555 99999999999999887655431111122233


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~  154 (211)
                      .-.+....-|++..||.-.+-....+. .+.-..+.. ++..+.....|..|.||.-|...+..+|.
T Consensus       341 ~~~l~~~~~D~~~rir~~v~i~~~~v~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  341 LLALRERDLDEDVRVRTQVVIVACDVM-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHhhcCChhhhheeeEEEEEeehh-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            344555556666666643221111110 111112223 66777777889999999999888888776

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.70  E-value=0.043  Score=51.47  Aligned_cols=140  Identities=15%  Similarity=0.199  Sum_probs=106.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHA   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~   84 (211)
                      ...+....++.+-.+|-.....|+++-..++.+.   .-..|+|.+.+ +.-.+.+||...-..++.+...-+.  .++.
T Consensus       869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~  948 (1030)
T KOG1967|consen  869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL  948 (1030)
T ss_pred             HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH
Confidence            3456667777778888888888888877666542   33578899999 7778899999998888877664443  4567


Q ss_pred             cccchHHhhhccchh---hHHHHHHHHHHHHHHhhcChhHH---HHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154           85 HVLLPPLETLCTVEE---TCMRDKAVESLCRIGSQMRESDL---VDWFIPLVKRLAAGEWFTARVSACGLFH  150 (211)
Q Consensus        85 ~~llp~l~~l~~d~~---~~VR~~a~~~l~~l~~~l~~~~~---~~~l~p~i~~l~~d~~~~vR~~~a~~l~  150 (211)
                      +.+.|.+-.+.+|.+   ..||+.|+++|..+.+..+..-+   ...++..+.+-..|+.--||+.|+..=+
T Consensus       949 ~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  949 STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            789999999999886   68999999999999998887644   3445555556667777778888876533

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.65  E-value=0.29  Score=44.14  Aligned_cols=176  Identities=11%  Similarity=0.091  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCC-----hHHHHHHHHHHHhccccccCc--cccccccchHHhhhc
Q 039154           26 RLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDD-----DDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLC   95 (211)
Q Consensus        26 R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~-----~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~   95 (211)
                      .-+.+.-|..|-+..|+  +.....|+.+|.+ ++..     ..+|-.++    +.+...+|.  +.+.+.+.|.+..-+
T Consensus       573 qSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aI----sal~~sl~e~Fe~y~~~fiPyl~~al  648 (858)
T COG5215         573 QSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAI----SALSTSLEERFEQYASKFIPYLTRAL  648 (858)
T ss_pred             HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence            44677888888888888  5666667777766 4332     34455544    333332322  445677889988888


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcCCCc--hHHHhHHhHHHhhccCCChHH---HHHHHHHH
Q 039154           96 TVEETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAGEWF--TARVSACGLFHIAYPSAPDIL---KTELRSIY  168 (211)
Q Consensus        96 ~d~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d~~~--~vR~~~a~~l~~l~~~~~~~~---~~~l~~~~  168 (211)
                      +..+..|-..|+.-++.++..++.+.  ..+.++..+.+..+++.-  .++-++...|+.++..+|..+   .+.++-+|
T Consensus       649 n~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~  728 (858)
T COG5215         649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF  728 (858)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            88888999999999999999998874  345566666665555542  467788999999999999984   44455555


Q ss_pred             HHhcC-----------CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          169 TQLCQ-----------DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       169 ~~L~~-----------D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      .+..+           |-...+|.....++..++....  ...+.++|++
T Consensus       729 qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~--nr~~~v~Pyv  776 (858)
T COG5215         729 QQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSK--NRVRSVLPYV  776 (858)
T ss_pred             HHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHhhhHH
Confidence            55443           2223566666666666666655  2234455554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.62  E-value=0.66  Score=42.84  Aligned_cols=193  Identities=16%  Similarity=0.172  Sum_probs=125.8

Q ss_pred             HHHHHHhcCCCHHH---HH-HHHHHHHHHHHHhCCcc------------hhhchhhhhhh-cCCChHHHHHHHHHHHhcc
Q 039154           12 AVLTDELKNDDIQL---RL-NSIRRLSTIARALGEER------------TPKELIPFLSA-NNDDDDEVLLAMAEELGVF   74 (211)
Q Consensus        12 ~~l~~~l~s~~~~~---R~-~a~~~l~~ia~~lg~~~------------~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l   74 (211)
                      ..|++.+-..++..   +. -|++.|..++..-|...            ....++.++.- =.-+++.+|...-+.+..+
T Consensus       208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~i  287 (938)
T KOG1077|consen  208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERI  287 (938)
T ss_pred             HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence            44555554444333   22 34667777776666652            22233333333 2345566777777777665


Q ss_pred             ccccC-----------------------------c-cccccccchHHhhhccchhhHHHHHHHHHHHHHHhh-cChhHHH
Q 039154           75 IPYVG-----------------------------G-VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ-MRESDLV  123 (211)
Q Consensus        75 ~~~ig-----------------------------~-~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~-l~~~~~~  123 (211)
                      .....                             . ++....-...|-.++++.|..+|.-|.+++..++.. +..+.++
T Consensus       288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK  367 (938)
T KOG1077|consen  288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVK  367 (938)
T ss_pred             HhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHH
Confidence            54221                             0 011111234566788899999999999999998876 3446677


Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch--hhHH
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA--HLKT  201 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~--~~~~  201 (211)
                      ++.--.+..|-.+....+|.-+..++..+|..-..   +.++.-+++.+..-++..|...+-...-++..+..|  |...
T Consensus       368 ~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na---k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVd  444 (938)
T KOG1077|consen  368 KHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA---KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVD  444 (938)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHhchhhH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence            77555566666688888999999999998876554   355555556666689999999999999999988664  7777


Q ss_pred             HHHHHH
Q 039154          202 DIMSIF  207 (211)
Q Consensus       202 ~llp~~  207 (211)
                      -++.++
T Consensus       445 viLqLi  450 (938)
T KOG1077|consen  445 VILQLI  450 (938)
T ss_pred             HHHHHH
Confidence            666654

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=95.61  E-value=0.84  Score=36.03  Aligned_cols=147  Identities=16%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhH-HHHHHHHHHHHHHhhcChhHHHH
Q 039154           48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETC-MRDKAVESLCRIGSQMRESDLVD  124 (211)
Q Consensus        48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~-VR~~a~~~l~~l~~~l~~~~~~~  124 (211)
                      ++..+..+ .....-|.|..+...+...-+..+..     -++.+..++.+- ++. |-..|-..++.+...      ..
T Consensus        46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~  114 (208)
T cd07064          46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YP  114 (208)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Ch
Confidence            44454555 45556788888887776654433222     144455555443 333 344444444443322      12


Q ss_pred             hhHHHHHHhhcCCC-chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154          125 WFIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI  203 (211)
Q Consensus       125 ~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l  203 (211)
                      ...+.+.+++.|++ |..|.++...+. .....   ..+.+..+...++.|++.-|++++.=.|.++++. .|+++...|
T Consensus       115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~~---~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~fl  189 (208)
T cd07064         115 EFEPVMDEWSTDENFWLRRTAILHQLK-YKEKT---DTDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRDFV  189 (208)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHcc---CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHH
Confidence            33677888888877 666666655443 22221   2357778888999999999999999999999997 888877776


Q ss_pred             HHHHHhh
Q 039154          204 MSIFEDL  210 (211)
Q Consensus       204 lp~~~~L  210 (211)
                      -.....|
T Consensus       190 ~~~~~~m  196 (208)
T cd07064         190 AAHKLRL  196 (208)
T ss_pred             HHhhhhc
Confidence            6554433

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.59  E-value=0.55  Score=37.78  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=27.6

Q ss_pred             CCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhc-CCCCHHHHHHHHHhhHHHH
Q 039154          137 EWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       137 ~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~-~D~~~~VR~aaa~~l~~~~  191 (211)
                      ..|++.++.+..+..+|...+. ...++++.+...+ ++..+.++..+.+.+..+.
T Consensus        96 ~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc  150 (234)
T PF12530_consen   96 EFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC  150 (234)
T ss_pred             chHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            3455555555555555554444 3444555555555 4555555555555555544

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.35  E-value=0.25  Score=42.18  Aligned_cols=129  Identities=13%  Similarity=0.072  Sum_probs=84.3

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchh-hHHH--HHHHHHHHHHHhhc------ChhHHHHhh
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCMR--DKAVESLCRIGSQM------RESDLVDWF  126 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~-~~VR--~~a~~~l~~l~~~l------~~~~~~~~l  126 (211)
                      +.++++.-|..+.+.|..       +...+.|+|.|..++.+.- ..+.  ...+..+.++...+      .-+..-..+
T Consensus       187 ~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~L  259 (343)
T cd08050         187 LVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQL  259 (343)
T ss_pred             HhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHH
Confidence            555667777777666554       3456788999888877762 3343  33344444444443      334445557


Q ss_pred             HHHHHHh------hc----CCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHH
Q 039154          127 IPLVKRL------AA----GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM--PMVRRSAASNLRKFA  191 (211)
Q Consensus       127 ~p~i~~l------~~----d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~  191 (211)
                      +|.+.+.      +.    ++.|..|..+|.++..++..++..   .+..+...+.+-+.|+.  ...+-.|...|..++
T Consensus       260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG  339 (343)
T cd08050         260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG  339 (343)
T ss_pred             HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence            7777543      32    567999999999999999999887   56777777777777665  333666666665543

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.32  E-value=0.26  Score=42.05  Aligned_cols=136  Identities=15%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCC-------hHHHHHHHHHHHhccccc--cCcc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDD-------DDEVLLAMAEELGVFIPY--VGGV   81 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~-------~~~VR~~~a~~L~~l~~~--ig~~   81 (211)
                      ..+.+.+.+++...|..|+..|.       .+.--..|+|+|.. ..+.       +-.+...+.+-...+...  +.-+
T Consensus       181 ~~It~a~~~~~~~~r~~aL~sL~-------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le  253 (343)
T cd08050         181 EEITEALVGSNEEKRREALQSLR-------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLE  253 (343)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchH
Confidence            34556677788888887777663       44556789999886 3221       222222222222222221  1123


Q ss_pred             ccccccchHHhhhc----------cchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCC--CchHHHhHHh
Q 039154           82 EHAHVLLPPLETLC----------TVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGE--WFTARVSACG  147 (211)
Q Consensus        82 ~~~~~llp~l~~l~----------~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~--~~~vR~~~a~  147 (211)
                      -..+.|+|.+...+          .++.|.+|+.|++.+..++..++..  .+...+...+.+...|+  .....+.+..
T Consensus       254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~  333 (343)
T cd08050         254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV  333 (343)
T ss_pred             HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence            34445666655433          3567899999999999999999886  44555554555444443  3556888888


Q ss_pred             HHHhhcc
Q 039154          148 LFHIAYP  154 (211)
Q Consensus       148 ~l~~l~~  154 (211)
                      .+..++.
T Consensus       334 GL~~lG~  340 (343)
T cd08050         334 GLSALGP  340 (343)
T ss_pred             HHHHhCc
Confidence            8887754

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=0.12  Score=47.76  Aligned_cols=58  Identities=19%  Similarity=0.116  Sum_probs=44.2

Q ss_pred             HhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          132 RLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       132 ~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      ....=.+..||.++...+.+++  .+.+ ....+...+.+.+.|++-+||-.|...+..+-
T Consensus       473 NRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  473 NRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            3333355679999988888887  3333 45677888889999999999999998887665

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=95.22  E-value=0.76  Score=38.93  Aligned_cols=46  Identities=24%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhcCCC--CHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154          162 TELRSIYTQLCQDD--MPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE  208 (211)
Q Consensus       162 ~~l~~~~~~L~~D~--~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~  208 (211)
                      ..+...|+.++-.+  .+.||+.|...+.++...-+.. +...++--++
T Consensus       203 ~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~  250 (339)
T PF12074_consen  203 SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLW  250 (339)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHH
Confidence            56777888888888  8999999999999988876653 4444444443

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=95.13  E-value=1.1  Score=34.47  Aligned_cols=73  Identities=19%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             HHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154          128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI  203 (211)
Q Consensus       128 p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l  203 (211)
                      +.+..+..+++.-+|.++...+...+..  ....+.++.....+..|++.-||++++-.|..+++. .|+.+...+
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~--~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l  180 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK--ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFL  180 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence            7788888877744444444443333332  224678899999999999999999999999999998 555544443

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.11  E-value=0.3  Score=45.98  Aligned_cols=143  Identities=14%  Similarity=0.046  Sum_probs=101.0

Q ss_pred             hhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcC-----
Q 039154           46 PKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMR-----  118 (211)
Q Consensus        46 ~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~-----  118 (211)
                      ++.++..+...++.+++||..+..++.++...-|   +..    .|.+.+.+.  .-..|..|.-.|.++.+...     
T Consensus         3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~---f~~----aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E   75 (1005)
T KOG2274|consen    3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEG---FGV----ALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFE   75 (1005)
T ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHhccccchH---HHH----HHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHh
Confidence            4556666677788888898888888888765333   222    233333333  44567777777777776642     


Q ss_pred             --------hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          119 --------ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       119 --------~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                              .+..+.++-..+.++.-|++..+|.++++.+..++..-=++.|.+++|...+++.+....=--.+.+.|.++
T Consensus        76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el  155 (1005)
T KOG2274|consen   76 AFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAEL  155 (1005)
T ss_pred             hccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence                    245566677777777779999999999999999988776778999999999999976655555666667666


Q ss_pred             HhhhC
Q 039154          191 AATVE  195 (211)
Q Consensus       191 ~~~~~  195 (211)
                      ..-+.
T Consensus       156 ~~ev~  160 (1005)
T KOG2274|consen  156 SDEVD  160 (1005)
T ss_pred             HHHHH
Confidence            65543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=95.11  E-value=0.053  Score=45.81  Aligned_cols=148  Identities=14%  Similarity=0.132  Sum_probs=112.7

Q ss_pred             chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc-----cchHHhhhccchhhHHHHHHHHHHHHHHhhc
Q 039154           44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV-----LLPPLETLCTVEETCMRDKAVESLCRIGSQM  117 (211)
Q Consensus        44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~-----llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l  117 (211)
                      .+...-+|++.+ +...+++|..-++=++..+..  |+.+..+.     +.+-|.+++..++..|..-|+.+++.+..--
T Consensus       239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD--g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~  316 (526)
T COG5064         239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSD--GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS  316 (526)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc--CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence            466788999999 777788998888888888776  33332222     3455889999999999888888888876554


Q ss_pred             ChhH--H-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          118 RESD--L-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       118 ~~~~--~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      +.++  + .--.++.+..+.+++..++|+-+|--+..+...-..+    ....|.|.++.|+.--+...|+.|+=++.+.
T Consensus       317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa  396 (526)
T COG5064         317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA  396 (526)
T ss_pred             ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4332  1 1226788888889988899999999888886665554    3568999999999999999999998887765


Q ss_pred             Hhh
Q 039154          191 AAT  193 (211)
Q Consensus       191 ~~~  193 (211)
                      ...
T Consensus       397 tsg  399 (526)
T COG5064         397 TSG  399 (526)
T ss_pred             hcc
Confidence            543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.08  E-value=0.38  Score=32.86  Aligned_cols=78  Identities=10%  Similarity=0.052  Sum_probs=61.4

Q ss_pred             HHHhhcCCCchHHHhHHhHHHhhccCCC-hH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          130 VKRLAAGEWFTARVSACGLFHIAYPSAP-DI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~-~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      .....+|+...+|......+..+...-. .. ....++.+|.+.++|+++=|=-+|.+.|..++...+. .+...++-.|
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-~vl~~L~~~y   86 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-EVLPILLDEY   86 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-HHHHHHHHHH
Confidence            4445578888899998888888877666 33 5678999999999999999999999999999998754 4455555554


Q ss_pred             H
Q 039154          208 E  208 (211)
Q Consensus       208 ~  208 (211)
                      .
T Consensus        87 ~   87 (92)
T PF10363_consen   87 A   87 (92)
T ss_pred             h
Confidence            3

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.06  E-value=0.49  Score=43.68  Aligned_cols=107  Identities=14%  Similarity=0.142  Sum_probs=85.7

Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhH--------HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESD--------LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-  159 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~--------~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-  159 (211)
                      ..+.+|+..+....|...++.++.+...+-.+.        .-+.++..+..-..|.++-+|+-+...+.+++..-++- 
T Consensus       302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~  381 (1128)
T COG5098         302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV  381 (1128)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence            456778899999999999999999988875532        22346666777778999999999999998888765544 


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                       -+.++......-++|.+..||+.|.+-+.++.-..+
T Consensus       382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence             467788888999999999999999998887765544

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=95.06  E-value=0.42  Score=39.54  Aligned_cols=129  Identities=14%  Similarity=0.181  Sum_probs=83.0

Q ss_pred             cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhH---HHH-----hhHHHHHHhhc--------CCCchHHHh
Q 039154           81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESD---LVD-----WFIPLVKRLAA--------GEWFTARVS  144 (211)
Q Consensus        81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~---~~~-----~l~p~i~~l~~--------d~~~~vR~~  144 (211)
                      +..+..++|.+-.++.|.+..+|..++..|..+.+..+...   +..     .+.+.+.....        +++..+=..
T Consensus       114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~  193 (282)
T PF10521_consen  114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA  193 (282)
T ss_pred             HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence            34677889999999999999999999999999999988766   432     24444444433        555444333


Q ss_pred             HHhHHHhhccC---C-ChH----HHHHHHH-HHHHhcCCC---CHHHHHHHHHhhHHHHhhhCchhhH--HHHHHHHHh
Q 039154          145 ACGLFHIAYPS---A-PDI----LKTELRS-IYTQLCQDD---MPMVRRSAASNLRKFAATVEPAHLK--TDIMSIFED  209 (211)
Q Consensus       145 ~a~~l~~l~~~---~-~~~----~~~~l~~-~~~~L~~D~---~~~VR~aaa~~l~~~~~~~~~~~~~--~~llp~~~~  209 (211)
                      +-..+-.++..   - +..    ..+.+.. ++-.+..=.   .+.+|...++.+..+++.+|...++  +.++|.+..
T Consensus       194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~  272 (282)
T PF10521_consen  194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ  272 (282)
T ss_pred             HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            33333333222   1 111    2233333 333333333   4999999999999999999986443  457776643

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=94.87  E-value=0.33  Score=37.49  Aligned_cols=125  Identities=10%  Similarity=0.008  Sum_probs=84.4

Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHHHhh---ccCCC
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLFHIA---YPSAP  157 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l~~l---~~~~~  157 (211)
                      -+++||++.+-+...+.--|..|...+.++.+.-+.+.+.   ..+++-+++..+..+-.|..++...+..+   .+.+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            3567888887777777777888888888888884444332   33444555556667778888888888888   78888


Q ss_pred             hH---HHHHHHHHHHHhcC-----------CCCHHHHHHHHHhhHHHHhhhCchhh--HHHHHHHHH
Q 039154          158 DI---LKTELRSIYTQLCQ-----------DDMPMVRRSAASNLRKFAATVEPAHL--KTDIMSIFE  208 (211)
Q Consensus       158 ~~---~~~~l~~~~~~L~~-----------D~~~~VR~aaa~~l~~~~~~~~~~~~--~~~llp~~~  208 (211)
                      +.   +..+++|.+--+.+           .....++......|..+-..-|++.+  ..+.+|.++
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IPTYe  182 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIPTYE  182 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCCCCC
Confidence            77   56667776553222           23466777777778777777777743  344555543

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.84  E-value=0.3  Score=46.97  Aligned_cols=132  Identities=15%  Similarity=0.119  Sum_probs=93.0

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHH
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVK  131 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~  131 (211)
                      -.|-.|++|..+.+.||...+....--.....|..+-=.+.|.+..||..++++|..+.++-..    +.+.+-+=..+.
T Consensus       296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV  375 (1048)
T KOG2011|consen  296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV  375 (1048)
T ss_pred             cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            4799999999999999999987765545555566666678999999999999999999988211    223333334445


Q ss_pred             Hhh-cCCCchHHHhHHhHHHhh--ccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          132 RLA-AGEWFTARVSACGLFHIA--YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       132 ~l~-~d~~~~vR~~~a~~l~~l--~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .++ .|.+..||......+-..  ...+..   +++.+. ..|.-|..+.||+++...+..-.
T Consensus       376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~d---~di~~V-y~Li~d~~r~~~~aa~~fl~~k~  434 (1048)
T KOG2011|consen  376 EMADRDRNVSVRAVGLVLCLLLSSSGLLSD---KDILIV-YSLIYDSNRRVAVAAGEFLYKKL  434 (1048)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHhcccccCh---hHHHHH-HHHHhccCcchHHHHHHHHHHHh
Confidence            566 566677777655444333  223332   355555 67889999999999998876543

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.74  E-value=0.17  Score=39.20  Aligned_cols=126  Identities=15%  Similarity=0.146  Sum_probs=78.5

Q ss_pred             chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH----
Q 039154           48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL----  122 (211)
Q Consensus        48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~----  122 (211)
                      .-++.+.+ +.+.+..||..+.+-+..+.+ - |=.+=...+|.+..|..|++..+|..|...+..+.++.+.=..    
T Consensus         8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~-q-GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~   85 (187)
T PF12830_consen    8 RYLKNILELCLSSDDSVRLAALQVLELILR-Q-GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS   85 (187)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-c-CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34555666 889999999999999988777 2 2222335678899999999999999999999999998754211    


Q ss_pred             --HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC--hHHHHHHHHHHHHhcCCC
Q 039154          123 --VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--DILKTELRSIYTQLCQDD  175 (211)
Q Consensus       123 --~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~--~~~~~~l~~~~~~L~~D~  175 (211)
                        -..-+.+-.++..|..-..+......+..++..+.  ...+.+|+..+.+...+.
T Consensus        86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~  142 (187)
T PF12830_consen   86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFD  142 (187)
T ss_pred             HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence              12233344445555443221113333344444333  224555555555555543

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.83  Score=39.33  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             hhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHH
Q 039154           93 TLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELR  165 (211)
Q Consensus        93 ~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~  165 (211)
                      ..++..+..||..|...+..+...- +....   ..+++.+..+..|++..||...-..+-.+....+++    ....++
T Consensus        65 ~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~  143 (393)
T KOG2149|consen   65 SQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM  143 (393)
T ss_pred             hhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence            3457888999999999999999884 44333   346677777889999999999888877755544443    567788


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHH--HHHHHH
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTD--IMSIFE  208 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~--llp~~~  208 (211)
                      ++....+....++||.-+..-+.-++..++|.+....  +++.|.
T Consensus       144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~  188 (393)
T KOG2149|consen  144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFK  188 (393)
T ss_pred             HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999998654332  444443

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.73  E-value=0.28  Score=43.78  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=94.1

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchh-hHHHHHHHHHHHHHHhh---c------ChhHHHHh
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQ---M------RESDLVDW  125 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~---l------~~~~~~~~  125 (211)
                      |...++.-|..|.+.|..       +.-.+.++|.|..++.+.- ..|-.....-|..+.+.   +      --+..-..
T Consensus       216 ~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~  288 (576)
T KOG2549|consen  216 CTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQ  288 (576)
T ss_pred             HhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHH
Confidence            667788888888777765       3345678888888876652 23222333333333332   2      22455566


Q ss_pred             hHHHHHH------hhc----CCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCC--CHHHHHHHHHhhHHH
Q 039154          126 FIPLVKR------LAA----GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDD--MPMVRRSAASNLRKF  190 (211)
Q Consensus       126 l~p~i~~------l~~----d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~--~~~VR~aaa~~l~~~  190 (211)
                      ++|.+..      |+.    |..|..|-.+|..+..++..++..   .+..+...+.+-+.|+  .+.-+..+...|..+
T Consensus       289 L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l  368 (576)
T KOG2549|consen  289 LVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL  368 (576)
T ss_pred             HhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence            7777744      333    566999999999999999999987   4567888888888887  478888888888666


Q ss_pred             HhhhCchhhHHHHHHH
Q 039154          191 AATVEPAHLKTDIMSI  206 (211)
Q Consensus       191 ~~~~~~~~~~~~llp~  206 (211)
                      +.    +.+..-|+|-
T Consensus       369 g~----~~I~~~ilp~  380 (576)
T KOG2549|consen  369 GH----EVIRTVILPN  380 (576)
T ss_pred             hh----hhhhheeccc
Confidence            65    4444455543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=2.4  Score=43.28  Aligned_cols=198  Identities=15%  Similarity=0.084  Sum_probs=129.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCccccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      +..+...+-+.||..|-.+...+..+|...|...+-..+..++.. +.+ .++.-|..-.-.+|.+-+++|+--..+++.
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~  957 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN  957 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence            445566688999999999999999999999988766677766555 544 455666777888899888888655555555


Q ss_pred             h---HHhhhccchhh-HHHHHHHHHHHHHHhhcChhH---HHHhhHHHHHHhhcCCCc--hHHHhHHhHHH------hhc
Q 039154           89 P---PLETLCTVEET-CMRDKAVESLCRIGSQMRESD---LVDWFIPLVKRLAAGEWF--TARVSACGLFH------IAY  153 (211)
Q Consensus        89 p---~l~~l~~d~~~-~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i~~l~~d~~~--~vR~~~a~~l~------~l~  153 (211)
                      .   ++..+.+|.+. .|+.-++.++.-+...-++-.   +..++--...-+..++..  .|+.+.-..+.      ++.
T Consensus       958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ali 1037 (2067)
T KOG1822|consen  958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALI 1037 (2067)
T ss_pred             cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHH
Confidence            5   77888888875 999999999999988877743   223333333444455443  44444433333      333


Q ss_pred             cCCChH------------HHHHHHHHHHHhcCCC-CHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154          154 PSAPDI------------LKTELRSIYTQLCQDD-MPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED  209 (211)
Q Consensus       154 ~~~~~~------------~~~~l~~~~~~L~~D~-~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~  209 (211)
                      ..+|++            .+...+ .-..++.++ ++.|-.++...+.++--.-+...-.+.++|.++.
T Consensus      1038 ttlgpeL~~N~~~d~t~~~rts~l-a~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~ 1105 (2067)
T KOG1822|consen 1038 TTLGPELGPNGDKDSTSTLRTSCL-AACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCS 1105 (2067)
T ss_pred             HhcccccCCCCcccchhHHHHHHH-HHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHH
Confidence            333332            112122 222344444 7888999988888887655555445566666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.33  E-value=0.87  Score=43.87  Aligned_cols=148  Identities=22%  Similarity=0.155  Sum_probs=93.0

Q ss_pred             CHHHHHHHHHHHHHHHHHh--CCcc-hhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccc------cCccccccccchH
Q 039154           22 DIQLRLNSIRRLSTIARAL--GEER-TPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPY------VGGVEHAHVLLPP   90 (211)
Q Consensus        22 ~~~~R~~a~~~l~~ia~~l--g~~~-~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~------ig~~~~~~~llp~   90 (211)
                      ++++|..|+--|..|..-.  |.+. +...|+.+-.+ ++|+ .+-.|.=++-.||.+=+.      .|..+...   .-
T Consensus       570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah---ek  646 (1387)
T KOG1517|consen  570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH---EK  646 (1387)
T ss_pred             CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH---HH
Confidence            3689999988888877543  3322 44556666666 7885 788999999999876553      23332221   12


Q ss_pred             HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHHH---
Q 039154           91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELR---  165 (211)
Q Consensus        91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~---  165 (211)
                      +-.+++|+-++||.+|+-+|+.+......+                  +.-++...+-...    +..+  ..+++.   
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~------------------fde~~~~~~~~~~----l~~~~~~~E~~i~~~  704 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSNGSDN------------------FDEQTLVVEEEID----LDDERTSIEDLIIKG  704 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcccccc------------------cchhhhhhhhhhc----chhhhhhHHHHHHhh
Confidence            445668899999999999999988875332                  1111111100000    1111  012222   


Q ss_pred             -HHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          166 -SIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       166 -~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                       -....+.+|-+|.||+..+..|..++.-.
T Consensus       705 ~~~ll~~vsdgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  705 LMSLLALVSDGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence             25678899999999999999998876543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=94.32  E-value=0.35  Score=37.36  Aligned_cols=81  Identities=10%  Similarity=0.047  Sum_probs=60.2

Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH---HhhhCc
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKF---AATVEP  196 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~---~~~~~~  196 (211)
                      ++++|.+..=........|..+...+..+...-+.+    ...++++.+.+.++-.+++|.+++.+.|..+   ...+|+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            567777765445555566777777777776663333    5788999999999999999999999999999   666675


Q ss_pred             hhhHHHHHHHHHh
Q 039154          197 AHLKTDIMSIFED  209 (211)
Q Consensus       197 ~~~~~~llp~~~~  209 (211)
                           .|+|++..
T Consensus       117 -----aLvPyyrq  124 (183)
T PF10274_consen  117 -----ALVPYYRQ  124 (183)
T ss_pred             -----HHHHHHHH
Confidence                 45555544

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=94.15  E-value=0.12  Score=29.37  Aligned_cols=31  Identities=29%  Similarity=0.187  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ...+|.+++|++++++.||+.|+..|+++++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            3468999999999999999999999998863

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.13  E-value=0.15  Score=34.82  Aligned_cols=64  Identities=16%  Similarity=0.045  Sum_probs=42.3

Q ss_pred             cCCChHHHHHHHHHHHhccccccC-ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVG-GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE  119 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~  119 (211)
                      ++|+.+-||..+...|..+.+.-. .......++.++...++|++..|=..|++.+..++...+.
T Consensus        12 L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen   12 LNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             ccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            566666677666666666655333 2234456677777777777777777777777777777654

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.07  E-value=0.49  Score=46.95  Aligned_cols=107  Identities=17%  Similarity=0.045  Sum_probs=81.0

Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  167 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~  167 (211)
                      +..+...+.-+...+|-.|+++|..+.+.=+.=-....+.-.+.+-..|.+..||.++.++++.+.-.... ...+.+..
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e-~~~qyY~~  896 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE-LIFQYYDQ  896 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-HHHHHHHH
Confidence            33444455655688999999999999988554334445555667777899999999999999987655432 34556666


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      ...=..|+...||+-+.+-+.+++...+
T Consensus       897 i~erIlDtgvsVRKRvIKIlrdic~e~p  924 (1692)
T KOG1020|consen  897 IIERILDTGVSVRKRVIKILRDICEETP  924 (1692)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence            6777889999999999999999887654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.07  E-value=0.46  Score=43.04  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=57.7

Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCh--hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHH-
Q 039154           94 LCTVEETCMRDKAVESLCRIGSQMRE--SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ-  170 (211)
Q Consensus        94 l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~-  170 (211)
                      .....+..||..+...+..+....+.  +.+.+.++..+.+-.=|..-.||.-+...+..+-+.-+.+ .......+.. 
T Consensus        99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~~~n~l~~~  177 (885)
T COG5218          99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENRIVNLLKDI  177 (885)
T ss_pred             cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Confidence            33444567777777777777777766  6666666655555556666677777777776665444433 2223333333 


Q ss_pred             hcCCCCHHHHHHHHHhh
Q 039154          171 LCQDDMPMVRRSAASNL  187 (211)
Q Consensus       171 L~~D~~~~VR~aaa~~l  187 (211)
                      +-+|++.+||++|..++
T Consensus       178 vqnDPS~EVRr~allni  194 (885)
T COG5218         178 VQNDPSDEVRRLALLNI  194 (885)
T ss_pred             HhcCcHHHHHHHHHHHe
Confidence            34577778887777665

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=94.02  E-value=1.2  Score=43.74  Aligned_cols=138  Identities=14%  Similarity=0.035  Sum_probs=90.3

Q ss_pred             cCCChHHHHHHHHHHHhccccccCcccc---cc---------ccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHH
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEH---AH---------VLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDL  122 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~---~~---------~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~  122 (211)
                      .-+..+++|+.++-.+-.+.+.-|+.-.   .+         ..+.-+..+..|+- .-||++++..|..+.+.+....+
T Consensus        86 ~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~  165 (1549)
T KOG0392|consen   86 LFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLI  165 (1549)
T ss_pred             hcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhh
Confidence            5566667777666666555553332110   01         11222334445443 46899999999999998877664


Q ss_pred             HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       123 ~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~---~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      .. .+.++.+++..+.|++|..-...+.........   ......++.++.-++|++-.||..|++.+..++...
T Consensus       166 ~~-~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~  239 (1549)
T KOG0392|consen  166 KE-TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ  239 (1549)
T ss_pred             HH-HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence            43 456677788888998876544443322221111   245677889999999999999999999999999888

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=93.97  E-value=0.5  Score=44.06  Aligned_cols=175  Identities=15%  Similarity=0.097  Sum_probs=105.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--ccccccc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GVEHAHV   86 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~~~~~~   86 (211)
                      ..+...++.++.-.|. ++..|..+|.....+  -.+..+++.+.+ +..++.++...+..-|..++-+-.  ..-....
T Consensus       253 kk~~~l~~kQeqLlrv-~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g  331 (708)
T PF05804_consen  253 KKLQTLIRKQEQLLRV-AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG  331 (708)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            3444555566666663 455666766444333  255677788888 777788888877777766653211  1223456


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcC--hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMR--ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LK  161 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~--~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~  161 (211)
                      ++|.|..++..++...+..++..|.++...-.  ...+..-++|.+..+.+|+.+  |..+...+..++..-...   ..
T Consensus       332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r~~f~~  409 (708)
T PF05804_consen  332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNF--REVALKILYNLSMDDEARSMFAY  409 (708)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhHHHHhh
Confidence            78888888888888888888888888765432  234445578888888888764  455666666665432211   22


Q ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHhhHH
Q 039154          162 TELRSIYTQLCQ-DDMPMVRRSAASNLRK  189 (211)
Q Consensus       162 ~~l~~~~~~L~~-D~~~~VR~aaa~~l~~  189 (211)
                      .+-+|...+++- -+...|...++.-+.+
T Consensus       410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iN  438 (708)
T PF05804_consen  410 TDCIPQLMQMLLENSEEEVQLELIALLIN  438 (708)
T ss_pred             cchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence            345566555433 3445555544333333

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.94  E-value=0.45  Score=41.04  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHHHHHhhcCh---------------hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154           99 ETCMRDKAVESLCRIGSQMRE---------------SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE  163 (211)
Q Consensus        99 ~~~VR~~a~~~l~~l~~~l~~---------------~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~  163 (211)
                      +|.-+..|+.-+..++.+...               +.+.++++|-+. -..+...-.|.-|++-+..+...++++....
T Consensus       268 ~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~  346 (370)
T PF08506_consen  268 NWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ  346 (370)
T ss_dssp             -HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH
Confidence            445556666666666665521               223455556555 1122223356666677777766776666666


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHh
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASN  186 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~  186 (211)
                      ++|.+.+++++++.-|+.=||..
T Consensus       347 ~~~~l~~~L~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  347 IFPLLVNHLQSSSYVVHTYAAIA  369 (370)
T ss_dssp             HHHHHHHHTTSS-HHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchhhhhhhh
Confidence            77777777777777777766654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.86  E-value=1.1  Score=38.71  Aligned_cols=138  Identities=13%  Similarity=0.160  Sum_probs=82.5

Q ss_pred             chHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC------CChHHHHHHHHHHHhcccccc--
Q 039154            9 YPIAVLTDELK-NDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN------DDDDEVLLAMAEELGVFIPYV--   78 (211)
Q Consensus         9 ~pl~~l~~~l~-s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~------D~~~~VR~~~a~~L~~l~~~i--   78 (211)
                      +|.+-+-..+. +|....|.+|+.-+..+++..+..- ..-+..++.+ ++      ..++.-+-+|..-++.++...  
T Consensus       210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t  288 (370)
T PF08506_consen  210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST  288 (370)
T ss_dssp             SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred             CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence            35555555555 4446668888888888887766432 2222233333 22      234444444444445544422  


Q ss_pred             ---Cc----------cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH
Q 039154           79 ---GG----------VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA  145 (211)
Q Consensus        79 ---g~----------~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~  145 (211)
                         |.          +-..++++|-|. --.+..+-+|..|++-+..+-..++++... .++|.+.+...+++.-|+..+
T Consensus       289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-~~~~~l~~~L~~~~~vv~tyA  366 (370)
T PF08506_consen  289 TKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-QIFPLLVNHLQSSSYVVHTYA  366 (370)
T ss_dssp             BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-HHHHHHHHHTTSS-HHHHHHH
T ss_pred             ccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHhCCCCcchhhhh
Confidence               11          113456677776 223446789999999999999999887654 488999999999999999999


Q ss_pred             HhHH
Q 039154          146 CGLF  149 (211)
Q Consensus       146 a~~l  149 (211)
                      |..+
T Consensus       367 A~~i  370 (370)
T PF08506_consen  367 AIAI  370 (370)
T ss_dssp             HHHH
T ss_pred             hhhC
Confidence            8753

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.74  E-value=0.71  Score=39.75  Aligned_cols=122  Identities=16%  Similarity=0.158  Sum_probs=88.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh---hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc---c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP---KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE---H   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~---~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~---~   83 (211)
                      +..++..++.-|..+|..|...+-..-..- +....   ..+++-+.+ ..|++..||.+.-+-+..+....+.+.   .
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~  138 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM  138 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence            778899999999999999999998776652 22223   344455555 789999999999888887666555444   2


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh--hHHHHHHh
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW--FIPLVKRL  133 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~--l~p~i~~l  133 (211)
                      ...+.|.+......--+.||.-+.+-|.-++...++....+.  +++.+...
T Consensus       139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~  190 (393)
T KOG2149|consen  139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDV  190 (393)
T ss_pred             HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            334556666677777899999999999999999988654322  44444443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=93.68  E-value=1.7  Score=40.65  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--Ccchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--cccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALG--EERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GVEHAH   85 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg--~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~~~~~   85 (211)
                      +..|++-|++++.+....++.-|.+++-.-.  ..-....++|-+.. +..++.+++..+...|.+++-.-+  ..-...
T Consensus       292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~  371 (708)
T PF05804_consen  292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL  371 (708)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence            4457788899999998888777777651100  01134456666666 566677788888888887765211  122234


Q ss_pred             ccchHHhhhccchhhHHHHHHHHHHHHHHh
Q 039154           86 VLLPPLETLCTVEETCMRDKAVESLCRIGS  115 (211)
Q Consensus        86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~  115 (211)
                      -++|.+..+++|++  .|..+.+.|..++.
T Consensus       372 GlIPkLv~LL~d~~--~~~val~iLy~LS~  399 (708)
T PF05804_consen  372 GLIPKLVELLKDPN--FREVALKILYNLSM  399 (708)
T ss_pred             CCcHHHHHHhCCCc--hHHHHHHHHHHhcc
Confidence            46788888887653  44556666665554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.63  E-value=1.1  Score=42.73  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=87.1

Q ss_pred             cccccccchHHhhhcc------chhhHH--HHHHHHHHHHHHhhcCh-----hHHHHhhHHHHHHhhcCCCchHHHhHHh
Q 039154           81 VEHAHVLLPPLETLCT------VEETCM--RDKAVESLCRIGSQMRE-----SDLVDWFIPLVKRLAAGEWFTARVSACG  147 (211)
Q Consensus        81 ~~~~~~llp~l~~l~~------d~~~~V--R~~a~~~l~~l~~~l~~-----~~~~~~l~p~i~~l~~d~~~~vR~~~a~  147 (211)
                      +++...+++.+...+.      .++..-  .+.|...++.++..+.+     +..+..+.+.+.=..+++.=-.|.-+|.
T Consensus       405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~  484 (1010)
T KOG1991|consen  405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW  484 (1010)
T ss_pred             hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence            4455555665555555      444444  46788888888877654     3444555555555556777668888999


Q ss_pred             HHHhhc-cCCChH-HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhhhCc--hhhHHHHHHHHHhh
Q 039154          148 LFHIAY-PSAPDI-LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAATVEP--AHLKTDIMSIFEDL  210 (211)
Q Consensus       148 ~l~~l~-~~~~~~-~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~--~~~~~~llp~~~~L  210 (211)
                      .++.++ ..+..+ ...+.+..-.+.+. |++--||-.||-+|.-+......  +.+...+-|+.++|
T Consensus       485 vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~l  552 (1010)
T KOG1991|consen  485 VLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQEL  552 (1010)
T ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHH
Confidence            999998 556665 44555555555554 99999999999999999988763  34666666666554

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=93.53  E-value=0.36  Score=37.27  Aligned_cols=79  Identities=16%  Similarity=0.126  Sum_probs=57.9

Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      +.+.....+++.-+|..|...+......   +...+.+++.+..+.+|+.+.||++++-.+..++....+...+.+....
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~  184 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNG  184 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            7788888888887777777777666555   3345778888888888888889999998888888886555444444443


Q ss_pred             HH
Q 039154          169 TQ  170 (211)
Q Consensus       169 ~~  170 (211)
                      ..
T Consensus       185 ~~  186 (197)
T cd06561         185 LS  186 (197)
T ss_pred             Hh
Confidence            33

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.44  E-value=1.8  Score=38.93  Aligned_cols=132  Identities=14%  Similarity=0.051  Sum_probs=92.9

Q ss_pred             CChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC-
Q 039154           58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG-  136 (211)
Q Consensus        58 D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d-  136 (211)
                      ++--+-|..+++.+.+.+-.+|+.+..+...-.+.+  ....|..=++++..+..+++.++++.  +.++|-+.++... 
T Consensus       363 ~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nl  438 (559)
T KOG2081|consen  363 SEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNL  438 (559)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCC
Confidence            344569999999999999999987765554433333  35568899999999999999999886  6667766665432 


Q ss_pred             -CCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          137 -EWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       137 -~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                       ....+|+..+..++.+.+-+...  ...-...+.....++..  .-.+++.+++.+...+-
T Consensus       439 p~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~  498 (559)
T KOG2081|consen  439 PEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACR  498 (559)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHH
Confidence             33459999999999998877665  33334444455555554  55566666666666553

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=93.34  E-value=5.8  Score=38.37  Aligned_cols=171  Identities=11%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHh-ccccc--------------------
Q 039154           20 NDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELG-VFIPY--------------------   77 (211)
Q Consensus        20 s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~-~l~~~--------------------   77 (211)
                      +.-+.+|..|+..+.++-...|..... .++-...+ +.|+--.++.++-..+- ..+..                    
T Consensus       483 DkaaavR~~al~s~tk~l~l~~~~~~~-sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~d~  561 (1529)
T KOG0413|consen  483 DKAAAVRLHALNSLTKILQLQSHREAF-SILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQDF  561 (1529)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccchH-HHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhhhc
Confidence            667889999999999888777764443 33433333 66776667765543331 11110                    


Q ss_pred             ----cC-c-cccccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154           78 ----VG-G-VEHAHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFH  150 (211)
Q Consensus        78 ----ig-~-~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~  150 (211)
                          .| + ..+...++..+..-++ |+...||.+|...+.......+.+......+-++..+|.|+...||+..|..|.
T Consensus       562 ~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Slt  641 (1529)
T KOG0413|consen  562 KLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLT  641 (1529)
T ss_pred             chhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHH
Confidence                00 1 1123344555444444 888899999999999999998888877777888999999999999999999998


Q ss_pred             hhccCCCh--HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          151 IAYPSAPD--ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       151 ~l~~~~~~--~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      ++-..-+.  +..+.|+-.++..++|.+..|-.-+..-+.++.
T Consensus       642 el~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l  684 (1529)
T KOG0413|consen  642 ELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL  684 (1529)
T ss_pred             HHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            87432211  245667777799999999988877766554443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.16  E-value=1.6  Score=36.50  Aligned_cols=114  Identities=19%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcChhHHHH---hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHH
Q 039154           94 LCTVEETCMRDKAVESLCRIGSQMRESDLVD---WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (211)
Q Consensus        94 l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~---~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~  170 (211)
                      .+.+++|.+...+++.+..+...-+ +...+   .++..+.+-+++..-.|-.++|-.+..++...+......+-.+...
T Consensus        96 ~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~  174 (334)
T KOG2933|consen   96 KLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ  174 (334)
T ss_pred             HhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466678888888888877776655 33222   2333444445566666666777777777777776633333333333


Q ss_pred             h---cCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154          171 L---CQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE  208 (211)
Q Consensus       171 L---~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~  208 (211)
                      |   ..++..-||..|-.+|..++....|.-+...|+|+.+
T Consensus       175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~  215 (334)
T KOG2933|consen  175 LLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQ  215 (334)
T ss_pred             HHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence            3   3344466788888888888888888877788887765

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=93.03  E-value=0.17  Score=44.65  Aligned_cols=101  Identities=14%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCh-h------HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-----HHH
Q 039154           94 LCTVEETCMRDKAVESLCRIGSQMRE-S------DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-----ILK  161 (211)
Q Consensus        94 l~~d~~~~VR~~a~~~l~~l~~~l~~-~------~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-----~~~  161 (211)
                      .+.-+++.||..|+.+|+++.+.+++ +      .....+...+-.-.....+.||.++|+.+++++..-.-     +..
T Consensus       492 ~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA  571 (728)
T KOG4535|consen  492 EASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA  571 (728)
T ss_pred             HhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCch
Confidence            34445689999999999999888763 1      11222222222222334578999999999999765322     145


Q ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhhh
Q 039154          162 TELRSIYTQLCQDDM-PMVRRSAASNLRKFAATV  194 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~  194 (211)
                      ..+++.+..|..|-. ..||..||..|..-++-.
T Consensus       572 ~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re  605 (728)
T KOG4535|consen  572 SQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE  605 (728)
T ss_pred             HHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence            788999999988766 899999998886555443

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=93.01  E-value=1.2  Score=43.76  Aligned_cols=165  Identities=18%  Similarity=0.074  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCcchhh------chhhhhhhcCCCh------HHHHHHHHHHHhccccccCccccccccchHH
Q 039154           24 QLRLNSIRRLSTIARALGEERTPK------ELIPFLSANNDDD------DEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (211)
Q Consensus        24 ~~R~~a~~~l~~ia~~lg~~~~~~------~L~p~l~~~~D~~------~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l   91 (211)
                      -.|.-|-.-|..+++.+|+.....      -|+--+.+..|.+      .+|-.+++--.+....-      .-..+|-+
T Consensus       748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~------~~~~l~~l  821 (1549)
T KOG0392|consen  748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP------LGSLLPRL  821 (1549)
T ss_pred             HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh------hhhhhhHH
Confidence            446677777888888898864321      1121122212222      33444444333332221      12456777


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchH-HHhHHhHHHhhccCCChH---HHHHHHHH
Q 039154           92 ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTA-RVSACGLFHIAYPSAPDI---LKTELRSI  167 (211)
Q Consensus        92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~v-R~~~a~~l~~l~~~~~~~---~~~~l~~~  167 (211)
                      ..+.......+|.+|+.++..+.+....+.. ..++..+.-+.+|-.--+ |..+-..+.-+.......   +..-|++.
T Consensus       822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p  900 (1549)
T KOG0392|consen  822 FFFVRSIHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVP  900 (1549)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhh
Confidence            7888888999999999999999888766643 334444444445543334 445555566555554443   55678899


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      ++..+.|+.-.||.++-+.+..+...++
T Consensus       901 llr~msd~~d~vR~aat~~fa~lip~~~  928 (1549)
T KOG0392|consen  901 LLRRMSDQIDSVREAATKVFAKLIPLLP  928 (1549)
T ss_pred             hhcccccchHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999998875

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.99  E-value=7.8  Score=36.16  Aligned_cols=79  Identities=11%  Similarity=0.062  Sum_probs=56.2

Q ss_pred             HHHhhcCCCchHHHhHHhHHHhhccCCC-hH-HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHH
Q 039154          130 VKRLAAGEWFTARVSACGLFHIAYPSAP-DI-LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSI  206 (211)
Q Consensus       130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~-~~-~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~  206 (211)
                      +.++..+..-..|+-+.+.+..++..-. -+ .+.+ ....+..++ +.+..||+-+..-|..|++.=....+.++++.+
T Consensus       334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqY  412 (938)
T KOG1077|consen  334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQY  412 (938)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            3444445555677777777766655422 22 4445 555566666 999999999999999999988888888888888


Q ss_pred             HHh
Q 039154          207 FED  209 (211)
Q Consensus       207 ~~~  209 (211)
                      +..
T Consensus       413 L~t  415 (938)
T KOG1077|consen  413 LET  415 (938)
T ss_pred             Hhh
Confidence            753

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=92.64  E-value=0.98  Score=37.36  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=86.2

Q ss_pred             chhhhhhh-cCCChHHHHHHHHHHHhccccccCccc---c-----ccccchHHhhhcc--------chhhHHHHHHHHHH
Q 039154           48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE---H-----AHVLLPPLETLCT--------VEETCMRDKAVESL  110 (211)
Q Consensus        48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~---~-----~~~llp~l~~l~~--------d~~~~VR~~a~~~l  110 (211)
                      .++|.+.. +-|.++++|...+..|..+.+.+....   .     .+.+.+.+...+.        ++...+=..+..++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            45788888 666789999999999999998776544   1     2233344444444        55666777888888


Q ss_pred             HHHHhhcCh---h----HHHHhhHH-HHHHhhcC---CCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC
Q 039154          111 CRIGSQMRE---S----DLVDWFIP-LVKRLAAG---EWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM  176 (211)
Q Consensus       111 ~~l~~~l~~---~----~~~~~l~p-~i~~l~~d---~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~  176 (211)
                      ..++.....   .    ...+.+-. ++..+..-   +..++|...+..++.+...+|-.   +.+.+++.+.+.++++.
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf  278 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF  278 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence            888776421   1    12222222 22222222   34788899999999999999987   56778888888877764

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=92.55  E-value=0.24  Score=28.60  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHh
Q 039154          161 KTELRSIYTQLCQDDMPMVRRSAASN  186 (211)
Q Consensus       161 ~~~l~~~~~~L~~D~~~~VR~aaa~~  186 (211)
                      .+.+...+.+-+.|+++.||.+|..-
T Consensus        16 ~~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   16 SSDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            45788888999999999999998764

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.47  E-value=3.7  Score=41.31  Aligned_cols=179  Identities=12%  Similarity=0.037  Sum_probs=110.0

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhh-h-cCCChHHHHHHHHHHHhcccc--c-cCccccccccchHHhhhcc
Q 039154           22 DIQLRLNSIRRLSTIARALGEERTPKELIPFLS-A-NNDDDDEVLLAMAEELGVFIP--Y-VGGVEHAHVLLPPLETLCT   96 (211)
Q Consensus        22 ~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~-~-~~D~~~~VR~~~a~~L~~l~~--~-ig~~~~~~~llp~l~~l~~   96 (211)
                      +...+.+++-.--.-....|+..++ +++..+. . ..+.++.||.++.+-+..++=  . +..+...+.|--++..++.
T Consensus      1501 d~a~~~a~~~~~lm~~~~~~~~l~~-e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~ 1579 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIGHHLQP-EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN 1579 (1710)
T ss_pred             hHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc
Confidence            4444544443333445566766554 3444444 3 556678899987665543221  1 2245667788889999999


Q ss_pred             chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh-hcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhc
Q 039154           97 VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL-AAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLC  172 (211)
Q Consensus        97 d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l-~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~  172 (211)
                      |++-+||+.|++.|.-+.+--..+...+..-+..... ++.....-+..+...++++.-.++..   +..+.+..+-...
T Consensus      1580 D~~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1580 DDQIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred             chHHHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhc
Confidence            9999999999999998865533332222222222222 22333344556778888887777665   2334444444455


Q ss_pred             CCCCHHHHHHHHHhhHHHHhhhCchhhHHH
Q 039154          173 QDDMPMVRRSAASNLRKFAATVEPAHLKTD  202 (211)
Q Consensus       173 ~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~  202 (211)
                      +|+ ..+++++-+.+.++-....-+|..++
T Consensus      1660 ~e~-~~i~~tvkktvseFrrth~D~W~~~k 1688 (1710)
T KOG1851|consen 1660 RES-AAIKQTVKKTVSEFRRTHADTWREHK 1688 (1710)
T ss_pred             CCc-hHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            666 67899999999998887766665543

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=92.42  E-value=2  Score=33.54  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChHHHHHHH-HHHHhccccccCccccccccch
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDDEVLLAM-AEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~~VR~~~-a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      ...+..+++..+.|..++..+........     ...++.+.. . .-++..+--.+ ..-++.+..    .  .....+
T Consensus        55 l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~----~--~~~~~~  123 (213)
T PF08713_consen   55 LADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLK----K--HPEALE  123 (213)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH----H--HGGHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHH----h--hHHHHH
Confidence            34445678888888877776654322211     224556665 3 23455544444 333444432    0  156788


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                      .+...+++++.-+|..++-.+......    ...+.++..+....+|+.+.||.+++-.|..++..-.
T Consensus       124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~  187 (213)
T PF08713_consen  124 LLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP  187 (213)
T ss_dssp             HHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence            889999999988888888777666655    3346788888888999999999999999999877744

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.25  E-value=0.38  Score=44.69  Aligned_cols=69  Identities=20%  Similarity=0.151  Sum_probs=53.1

Q ss_pred             chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154           44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIG  114 (211)
Q Consensus        44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~  114 (211)
                      .+.+.-+-++.. ..=++..||.++...|.+|+  .+.+.....+...+...+.|.++.||+.|.-.+..+-
T Consensus       462 ~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  462 PNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            344444555555 66678889999999998887  4556667788888899999999999999888887776

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.75  E-value=1.4  Score=40.82  Aligned_cols=109  Identities=10%  Similarity=0.095  Sum_probs=84.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc-
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG-   80 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~-   80 (211)
                      ...+.+.|.|+...-|.+.+..+..+...+..+-        +-+.|+..+.+ +.|..|.+|.-+.+.+..+...-.. 
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~  380 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT  380 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence            5667788999999999888888887776655442        55678888999 9999999999998888877663211 


Q ss_pred             cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154           81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE  119 (211)
Q Consensus        81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~  119 (211)
                      ....+.+......-++|....||..|++-+.++.-..|.
T Consensus       381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF  419 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF  419 (1128)
T ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence            223445666777788999999999999999999877654

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.71  E-value=4.1  Score=30.84  Aligned_cols=121  Identities=14%  Similarity=0.058  Sum_probs=83.9

Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh----hHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW----FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-  158 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~----l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-  158 (211)
                      .+.+..-+.+++++.+..-|..++.-+..+++..+.+.+.++    +--.+.-+-+.+...++.+++..+..++..... 
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344555677888998899999999999999999888766333    222223334455567888888888777654433 


Q ss_pred             -----H----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc------hhhHHHHHHH
Q 039154          159 -----I----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP------AHLKTDIMSI  206 (211)
Q Consensus       159 -----~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~------~~~~~~llp~  206 (211)
                           +    .-..+++.++++++|  ..+...+...|..+...++.      ..+++.++++
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l  163 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL  163 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence                 1    356688888999998  67777888888888887653      2444445544

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=91.71  E-value=1.2  Score=32.71  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             CcchHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-
Q 039154            7 PLYPIAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-   83 (211)
Q Consensus         7 ~~~pl~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-   83 (211)
                      +-.|+..+++...|+. .+.-...+-.+....+.-  .....+.+..+.+ +.+.++.|..-+..-|..++++.|...+ 
T Consensus         2 ~~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~   79 (140)
T PF00790_consen    2 PSSSITELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHR   79 (140)
T ss_dssp             CCSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             CCChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3467888888877654 222333444444433222  3444666777777 8888888888888888888887764332 


Q ss_pred             ---ccccchHHhhhccchh--hH--HHHHHHHHHHHHHhhcChhH
Q 039154           84 ---AHVLLPPLETLCTVEE--TC--MRDKAVESLCRIGSQMRESD  121 (211)
Q Consensus        84 ---~~~llp~l~~l~~d~~--~~--VR~~a~~~l~~l~~~l~~~~  121 (211)
                         ...++..+..++.+..  ..  ||+.+.+.+..-+..|..+.
T Consensus        80 ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~  124 (140)
T PF00790_consen   80 EVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDP  124 (140)
T ss_dssp             HHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTST
T ss_pred             HHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCC
Confidence               2235555666555442  22  88888888888888775443

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.53  E-value=1.9  Score=40.37  Aligned_cols=71  Identities=20%  Similarity=0.128  Sum_probs=55.9

Q ss_pred             hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH------HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE------LRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~------l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      .+..+....+...++||..+..+|..+....|.+.++-      =+.-++.++.|...-+|-.+.--|.++++--+.
T Consensus       123 ~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~  199 (970)
T KOG0946|consen  123 NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS  199 (970)
T ss_pred             hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence            45556666777788999999999999999888874333      335678899999999999999988888876553

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.43  E-value=8.1  Score=32.86  Aligned_cols=178  Identities=12%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccc---c-ccccchHH
Q 039154           19 KNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVE---H-AHVLLPPL   91 (211)
Q Consensus        19 ~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~---~-~~~llp~l   91 (211)
                      .+.+.+.|..|...|-..+..+.-..   .-.-+.|.+.-.++.+.+||..++..++..++.-....   . ...+-.++
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            35667778888777776665444321   11223344444889999999999999999887532100   0 11334556


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhh---HHHHHHhhcC--CCchHHHhHHhHHHhhccCCChH---H-HH
Q 039154           92 ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWF---IPLVKRLAAG--EWFTARVSACGLFHIAYPSAPDI---L-KT  162 (211)
Q Consensus        92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l---~p~i~~l~~d--~~~~vR~~~a~~l~~l~~~~~~~---~-~~  162 (211)
                      ..+.++....+|..|..++..+.....+-...-.-   +..+....++  ...+.+.-++.++..+...-..+   . ..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            67777888999999999999999888664321111   2223333334  44555666777777765543332   2 22


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      .+......+..--+++++.++...+-.....+..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            3445556666667788888888887777766543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.97  E-value=1.8  Score=44.11  Aligned_cols=159  Identities=14%  Similarity=0.141  Sum_probs=105.1

Q ss_pred             HhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchH-HhhhccchhhHHHHHHHHHHHHHHhh
Q 039154           39 ALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        39 ~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~  116 (211)
                      .+|++..+.--+-++.. +.-.+|..|.++++.++.++..+|...+...+... |+++.+-.++.-|..-.-+++.+-+.
T Consensus       867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky  946 (2067)
T KOG1822|consen  867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY  946 (2067)
T ss_pred             ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence            44555544444455556 67789999999999999999999876665555544 67776666667777666666666555


Q ss_pred             c---ChhHHHHhhHHHHHHhhcCCCc-hHHHhHHhHHHhhccCCChH---HH-HHHHHHHHHhcCC--CCHHHHHHHHHh
Q 039154          117 M---RESDLVDWFIPLVKRLAAGEWF-TARVSACGLFHIAYPSAPDI---LK-TELRSIYTQLCQD--DMPMVRRSAASN  186 (211)
Q Consensus       117 l---~~~~~~~~l~p~i~~l~~d~~~-~vR~~~a~~l~~l~~~~~~~---~~-~~l~~~~~~L~~D--~~~~VR~aaa~~  186 (211)
                      .   +..+..+.-+..+..+.+|+.- .|+......+.-+...-++-   +. ..+.-+..-|+++  ...+|++.--+.
T Consensus       947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen  947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred             ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence            4   4455556666688899999876 78877777776666655554   22 2233333333444  346777777777


Q ss_pred             hH------HHHhhhCch
Q 039154          187 LR------KFAATVEPA  197 (211)
Q Consensus       187 l~------~~~~~~~~~  197 (211)
                      +.      .+...+|||
T Consensus      1027 ~~~~~~~~alittlgpe 1043 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPE 1043 (2067)
T ss_pred             cccchhHHHHHHhcccc
Confidence            76      777777764

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.81  E-value=1.3  Score=42.85  Aligned_cols=100  Identities=11%  Similarity=0.057  Sum_probs=84.3

Q ss_pred             HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC---CChH--HHHHHH
Q 039154           91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDI--LKTELR  165 (211)
Q Consensus        91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~---~~~~--~~~~l~  165 (211)
                      |..-..|-.+.||..|+..|+.=.+..|.-.+....+.++-...+|.+-.||..|...+..++..   .+.=  +.+.|.
T Consensus       292 FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK  371 (1048)
T KOG2011|consen  292 FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK  371 (1048)
T ss_pred             eeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            44456788899999999999999999999999999999999999999999999999999999988   2221  677788


Q ss_pred             HHHHHhc-CCCCHHHHHHHHHhhHHH
Q 039154          166 SIYTQLC-QDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       166 ~~~~~L~-~D~~~~VR~aaa~~l~~~  190 (211)
                      ...+.++ .|-+..||......+-..
T Consensus       372 ~RIVeMadrd~~~~Vrav~L~~~~~~  397 (1048)
T KOG2011|consen  372 DRIVEMADRDRNVSVRAVGLVLCLLL  397 (1048)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHH
Confidence            8888887 888899998776655443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=90.58  E-value=0.39  Score=27.17  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIG  114 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~  114 (211)
                      .+|.|..++++++..||+.|+.+|..++
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4667777777777777777777777665

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=90.55  E-value=6.3  Score=32.30  Aligned_cols=102  Identities=12%  Similarity=0.013  Sum_probs=62.7

Q ss_pred             HhhhccchhhHHHHHHHHHHHHHHhhcChhHHH----HhhHHHHHHhhcCCCchHHHhHHhHHHhhc--cCCChHHHHHH
Q 039154           91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLV----DWFIPLVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTEL  164 (211)
Q Consensus        91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~----~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~--~~~~~~~~~~l  164 (211)
                      +...+.++++.+|..|+..|..+.+.++++...    +.++.++..-. +++..+..+ ...+..+.  ..++.+....+
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i   81 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDHACVQPA-LKGLLALVKMKNFSPESAVKI   81 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccHhhHHHH-HHHHHHHHhCcCCChhhHHHH
Confidence            445668899999999999999999999976443    34555555444 334445444 45555554  23333333444


Q ss_pred             HHHHHHhcC--CCCHHHHHHHHHhhHHHHhhh
Q 039154          165 RSIYTQLCQ--DDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       165 ~~~~~~L~~--D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      ...+.+-.+  .....+|..+.+-+..+....
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~  113 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH  113 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh
Confidence            444444333  333677777777777666654

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.54  E-value=1.4  Score=43.66  Aligned_cols=112  Identities=22%  Similarity=0.245  Sum_probs=75.5

Q ss_pred             cccccchHHhhhccchhhHHHHHHHHHHHHHHhh----cChhH----HHHhhHHHHHHhhc---CC--------Cch---
Q 039154           83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ----MRESD----LVDWFIPLVKRLAA---GE--------WFT---  140 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~----l~~~~----~~~~l~p~i~~l~~---d~--------~~~---  140 (211)
                      .+-.++..+.+++.|+-..||..|+..+-++...    +++..    +-+.++|++-+-..   ++        .|+   
T Consensus       994 lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen  994 LWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred             HHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhh
Confidence            3455677888999999999999999999888554    55533    34556676642110   21        232   


Q ss_pred             --HHHhHHhHHHhhccCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          141 --ARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       141 --vR~~~a~~l~~l~~~~~~-----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                        +-...+++|+.-.+.+-.     +.++.++..+.++..|..+++.-++..++.++...+
T Consensus      1074 ~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence              112334444332222211     158899999999999999999999999999987654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.16  E-value=8.4  Score=30.89  Aligned_cols=187  Identities=16%  Similarity=0.048  Sum_probs=107.9

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhh--
Q 039154           17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLET--   93 (211)
Q Consensus        17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~--   93 (211)
                      .-+..++......++.|+.++..=.  ......+..+.. ...+..+.+..+...+..+-+ .+ +.....|-+.+..  
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~-~r~f~~L~~~L~~~~   84 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWK-AN-DRHFPFLQPLLLLLI   84 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH-hC-chHHHHHHHHHHHHH
Confidence            4556777778788888877653221  222223333333 334444454444444444333 11 1111233333333  


Q ss_pred             -------hccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh-cCCCchHHHhHHhHHHhhccCCChHHHHHHH
Q 039154           94 -------LCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA-AGEWFTARVSACGLFHIAYPSAPDILKTELR  165 (211)
Q Consensus        94 -------l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~-~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~  165 (211)
                             .-+++++.+..+...++..++...+.  ....+++.+.... ++....++..+.+.+..+++.---++.+.+.
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~  162 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK  162 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence                   12234567777878899999999887  4566778888887 7777888888889998888443333444555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhC-----chhhHHHHHHHHHhh
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVE-----PAHLKTDIMSIFEDL  210 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~-----~~~~~~~llp~~~~L  210 (211)
                      -.--+|-.|..|.|=++.+.-+. +....+     .+.+...++..++++
T Consensus       163 vl~~~l~~~~rp~v~~~l~~l~~-l~~~~~~~~e~~~~~~~~~l~~lW~~  211 (234)
T PF12530_consen  163 VLQKKLSLDYRPLVLKSLCSLFA-LVPQGAVDSEEYEELKRQILQLLWEY  211 (234)
T ss_pred             HHHHhcCCccchHHHHHHHHHHH-HhccccCChhhhhHHHHHHHHHHHhh
Confidence            55556677888888776443332 222221     245666666666654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=90.08  E-value=2  Score=33.29  Aligned_cols=70  Identities=13%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS-APDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~-~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +..++.|.+++-++.-.+|..+...+..+..+ +-.+  ..-+|.++.|..|+++.+|..|...+..+....+
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            45566677788888888888888877665332 2221  4678888888888888888888888777766554

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.89  E-value=6.1  Score=29.28  Aligned_cols=85  Identities=8%  Similarity=0.091  Sum_probs=62.1

Q ss_pred             hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhhCchh
Q 039154          125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQD-DMPMVRRSAASNLRKFAATVEPAH  198 (211)
Q Consensus       125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~~~~~  198 (211)
                      ..+..+++-..+.+.+|-..+..++..+...+|..     ....|+..+.+++++ ..+.||.-+..-+...+..|..+-
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~  116 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP  116 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            34444444445667777777888888888888876     356888999999999 789999999999999999997543


Q ss_pred             hHHHHHHHHHh
Q 039154          199 LKTDIMSIFED  209 (211)
Q Consensus       199 ~~~~llp~~~~  209 (211)
                      -...+--.+..
T Consensus       117 ~l~~i~~~y~~  127 (144)
T cd03568         117 SLSLMSDLYKK  127 (144)
T ss_pred             ccHHHHHHHHH
Confidence            23334444433

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.87  E-value=3.6  Score=31.17  Aligned_cols=73  Identities=10%  Similarity=0.083  Sum_probs=57.7

Q ss_pred             HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhhhC
Q 039154          123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDM-PMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       123 ~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~~  195 (211)
                      -+.+...+.++.++++..-|...+.++..+++..+.+    ....++..+.+.++.++ +.+++++...+..+.....
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~  100 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR  100 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4556667888899999999999999999999988776    23456666666666544 7889999999999998876

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=89.85  E-value=1.2  Score=41.33  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERT   45 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~   45 (211)
                      ++.+.+...|.+..+|-++++.+.++++.+|-...
T Consensus       248 V~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~  282 (993)
T COG5234         248 VDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLA  282 (993)
T ss_pred             HHHHHcCcccccHHHHHHHHhhHHHHHhhcccccH
Confidence            55666777788899999999999999999997643

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=89.81  E-value=1.6  Score=29.76  Aligned_cols=57  Identities=14%  Similarity=0.029  Sum_probs=43.8

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCC--CchHHHhHHhHHHhh
Q 039154           96 TVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGE--WFTARVSACGLFHIA  152 (211)
Q Consensus        96 ~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~--~~~vR~~~a~~l~~l  152 (211)
                      .++++.+|+.|++.+..++..++..  .++..+...+.+...|+  ++..++.+...+..+
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l   76 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL   76 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            4667899999999999999998864  46666777776666654  467788888888776

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=89.71  E-value=8.9  Score=35.56  Aligned_cols=177  Identities=19%  Similarity=0.174  Sum_probs=99.5

Q ss_pred             Ccch-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc--c
Q 039154            7 PLYP-IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG--V   81 (211)
Q Consensus         7 ~~~p-l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~--~   81 (211)
                      +-.| ++.+-+++.+++...|..++-.|+..  --|+.  .....|.|++.. .+...+|...++-.||-+.  +|.  +
T Consensus       449 e~dpalALLsdyv~~~~s~~ri~aIlGLgla--yaGsq~e~V~~lL~Pi~~d-~~~~~ev~~~aslsLG~If--vGscn~  523 (878)
T KOG2005|consen  449 ECDPALALLSDYLQSSSSIHRIGAILGLGLA--YAGSQREEVLELLSPIMFD-TKSPMEVVAFASLSLGMIF--VGSCNE  523 (878)
T ss_pred             ccCHHHHHHHHhccCCCceeehHHhhhhHHh--hcCCchHHHHHHHhHHhcC-CCCchhHHHHHHhhcceeE--EecCCh
Confidence            3344 88889999999999999999888643  23432  233344455543 2334668888888888653  332  3


Q ss_pred             ccccccchHHhhhccch--hhHHHHHH-----------------HHHHHHHHhhcCh-----------------------
Q 039154           82 EHAHVLLPPLETLCTVE--ETCMRDKA-----------------VESLCRIGSQMRE-----------------------  119 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~--~~~VR~~a-----------------~~~l~~l~~~l~~-----------------------  119 (211)
                      +..+.++..|.+-.+-+  +...|.-+                 ++.+..+.+.+..                       
T Consensus       524 dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q  603 (878)
T KOG2005|consen  524 DVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQ  603 (878)
T ss_pred             HHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechh
Confidence            45556665555544422  23444322                 2222222222211                       


Q ss_pred             -------------------------------hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154          120 -------------------------------SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus       120 -------------------------------~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                                                     +.-.+..+-.+..+..=.....|.++--.++-++..-+   +-.++..+
T Consensus       604 ~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNP---q~~vlDtL  680 (878)
T KOG2005|consen  604 LLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP---QVNVLDTL  680 (878)
T ss_pred             hhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC---cchHHHHH
Confidence                                           00011122223333333444567766666665554433   23677788


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHH
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      -++.+|.+.+|-..++.++|-++
T Consensus       681 sk~shd~D~eva~naIfamGLiG  703 (878)
T KOG2005|consen  681 SKFSHDGDLEVAMNAIFAMGLIG  703 (878)
T ss_pred             HHhccCcchHHHHHHHHHhcccc
Confidence            88888999998888877776443

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=89.54  E-value=3.2  Score=37.82  Aligned_cols=61  Identities=10%  Similarity=0.065  Sum_probs=50.2

Q ss_pred             cCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          135 AGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       135 ~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      ..+.-.+|-+++.-++.++...-++     .-..+..+|-.|+.|+.|.|+.-|..+++.|+..-.
T Consensus       490 ~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~  555 (559)
T PF14868_consen  490 SEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS  555 (559)
T ss_pred             hCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence            4555569999999998887765443     346788899999999999999999999999998654

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=89.14  E-value=7.9  Score=30.34  Aligned_cols=161  Identities=20%  Similarity=0.234  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHhCCcchhhchhhhhhh----cCCChHHHHHHHHHHHhccccccCccccccccchH-Hhhhccchh
Q 039154           25 LRLNSIRRLSTIARALGEERTPKELIPFLSA----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEE   99 (211)
Q Consensus        25 ~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~----~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~~   99 (211)
                      .-....+-+..+-..+|.. ....+.|.+..    -.+++...|..+-+.+|...+.+|++... .++|+ +..  .+..
T Consensus        16 aw~~vl~v~s~lf~~lg~~-~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL-~~lPLnl~~--~~~~   91 (198)
T PF08161_consen   16 AWPEVLNVLSALFEKLGER-SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL-SILPLNLDN--ADDS   91 (198)
T ss_pred             HHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH-HHCCCCccC--CCcC
Confidence            3445566666666777764 34556666554    23444678888888888888888877655 34443 211  2222


Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc---C-----CCchHHH--hH----HhHHHhhccCCChH--HHHH
Q 039154          100 TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA---G-----EWFTARV--SA----CGLFHIAYPSAPDI--LKTE  163 (211)
Q Consensus       100 ~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~---d-----~~~~vR~--~~----a~~l~~l~~~~~~~--~~~~  163 (211)
                      ..-|.--+--|.+-...-+-..+.++++|+...+-+   +     .....|.  ..    =.++|.+|..-.+-  ....
T Consensus        92 ~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~  171 (198)
T PF08161_consen   92 QPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPS  171 (198)
T ss_pred             CcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHH
Confidence            222333333333333333445667788888766522   1     1111121  11    14456666542211  2256


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      +-..+.++++|+ ++.|...+++|..+
T Consensus       172 ~a~~L~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  172 FAKLLGNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence            677777777776 78888888888665

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.60  E-value=2.5  Score=40.02  Aligned_cols=127  Identities=14%  Similarity=0.136  Sum_probs=85.1

Q ss_pred             ccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChhH---HHHhhHHHH-HHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           84 AHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRESD---LVDWFIPLV-KRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        84 ~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i-~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                      ...+.|.|..|++++ +..+-..|+.+|..+++.++..-   +..+.+|.+ .+|..=+...|-.-+...+-.+...=+.
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~  288 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK  288 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence            456789999999999 58999999999999999998862   345667766 4455555555655666666666555444


Q ss_pred             H-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh--HHHHHHHHHhh
Q 039154          159 I-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL--KTDIMSIFEDL  210 (211)
Q Consensus       159 ~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~--~~~llp~~~~L  210 (211)
                      . .+.--+-.++..+.==+-.+.+.|..-..+.++.+.+|.+  .-+-+|+++.|
T Consensus       289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~l  343 (1051)
T KOG0168|consen  289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPL  343 (1051)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence            4 1221122222222222456777888888889999988744  44677887654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=88.35  E-value=1.3  Score=31.78  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=34.3

Q ss_pred             ChHHHHHHHHHHHhccccccC-ccccc--cccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154           59 DDDEVLLAMAEELGVFIPYVG-GVEHA--HVLLPPLETLCTVEETCMRDKAVESLCRIG  114 (211)
Q Consensus        59 ~~~~VR~~~a~~L~~l~~~ig-~~~~~--~~llp~l~~l~~d~~~~VR~~a~~~l~~l~  114 (211)
                      +++.+...+|.-+|.++++.. |....  --.-..+.+|++++++.||..|+.++.++.
T Consensus        56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            366677777777777777542 11111  122345677778888888888888877764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.03  E-value=12  Score=31.92  Aligned_cols=140  Identities=14%  Similarity=0.006  Sum_probs=91.1

Q ss_pred             cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH---H-HhhHHH
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---V-DWFIPL  129 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---~-~~l~p~  129 (211)
                      ....+.+=+..+-+.|..++..+.-  .-+..-.++.+...+++.+..+|+.|+..++..++.-++.+.   + ..+=.+
T Consensus        92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            3445566667777777777665532  111222334444488999999999999999999998776432   1 234456


Q ss_pred             HHHhhcCCCchHHHhHHhHHHhhccCCChH---H-HHHHHHHHHHhcCC--CCHHHHHHHHHhhHHHHhhhC
Q 039154          130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI---L-KTELRSIYTQLCQD--DMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~-~~~l~~~~~~L~~D--~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +..+..|+.-++|..+.+.+..+.....+-   + .-.=...+...+++  .+...++-++.-++.+...-.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence            677888999999999988888887665443   1 11112344455555  667777777777777776544

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.57  E-value=6.6  Score=28.79  Aligned_cols=86  Identities=10%  Similarity=0.069  Sum_probs=60.8

Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcCCCC--HH--HHHHHHHhhHHHHhhh
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQDDM--PM--VRRSAASNLRKFAATV  194 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~D~~--~~--VR~aaa~~l~~~~~~~  194 (211)
                      +..+..+.+-.+..+..+-..+..++..+....|..+     ...|+..+.+++.+..  +.  ||.-+..-+...+..|
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4455555555566888888888888888888887762     3457888888777654  33  9999999999999999


Q ss_pred             CchhhHHHHHHHHHh
Q 039154          195 EPAHLKTDIMSIFED  209 (211)
Q Consensus       195 ~~~~~~~~llp~~~~  209 (211)
                      +.+--...+.-.+..
T Consensus       121 ~~~~~~~~i~~~y~~  135 (140)
T PF00790_consen  121 KSDPELSLIQDTYKR  135 (140)
T ss_dssp             TTSTTGHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHH
Confidence            654334445555444

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.56  E-value=1.6  Score=43.69  Aligned_cols=57  Identities=25%  Similarity=0.343  Sum_probs=26.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHH
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAE   69 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~   69 (211)
                      ..+....|+.+..|..|+..+..+...+|.+.  .-.+++|++.+ ..|++++|-..+.+
T Consensus      1545 k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1545 KILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence            34444445555555555555555555555432  22344455555 44555555444444

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=87.53  E-value=11  Score=33.34  Aligned_cols=160  Identities=15%  Similarity=0.215  Sum_probs=96.6

Q ss_pred             hchhhhhhh-c-CCChHHHHHHHHHHHhccccccCcc------ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcC
Q 039154           47 KELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGV------EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMR  118 (211)
Q Consensus        47 ~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~------~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~  118 (211)
                      +.|..++.. + +..+|..-+-+-+.++.+.+.....      .....++|.+...++.+-.+.=-++...+..+.+.-+
T Consensus        70 ~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~  149 (435)
T PF03378_consen   70 QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP  149 (435)
T ss_dssp             HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            344555555 3 3457889999999999998876532      3577899999999888866666777888888888877


Q ss_pred             hhHHHHhhHHHHHHhhcCCCchHHHh---HHhHHHhhccC----C-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          119 ESDLVDWFIPLVKRLAAGEWFTARVS---ACGLFHIAYPS----A-PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       119 ~~~~~~~l~p~i~~l~~d~~~~vR~~---~a~~l~~l~~~----~-~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                      ...+.+....++.-+.....|.-|-+   ....+..+...    + .......++..|.+|+.-...+  ..+..-|..+
T Consensus       150 ~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~i  227 (435)
T PF03378_consen  150 SSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESI  227 (435)
T ss_dssp             --S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHH
Confidence            44443333333444445555653322   22222222111    1 1224577899999999877655  4467888899


Q ss_pred             HhhhCchhhHHHHHHHHH
Q 039154          191 AATVEPAHLKTDIMSIFE  208 (211)
Q Consensus       191 ~~~~~~~~~~~~llp~~~  208 (211)
                      ...++++.....+-++|.
T Consensus       228 v~~~p~~~l~~yl~~I~~  245 (435)
T PF03378_consen  228 VENLPPEALEPYLKQIFT  245 (435)
T ss_dssp             HHHS-HHHHGGGHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHH
Confidence            999998876666655543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=87.48  E-value=6.8  Score=35.31  Aligned_cols=136  Identities=15%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCC--------hHHHHHHHHHHHhccccc--cCc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDD--------DDEVLLAMAEELGVFIPY--VGG   80 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~--------~~~VR~~~a~~L~~l~~~--ig~   80 (211)
                      +.+++-+.+.|+..|..|++.|.       .+.=-..|+|+|.. +.+.        +-+....+.+-...+..+  +--
T Consensus       210 ~~It~a~~g~~~~~r~eAL~sL~-------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l  282 (576)
T KOG2549|consen  210 KEITEACTGSDEPLRQEALQSLE-------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL  282 (576)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhhc-------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence            34556677899999999988773       44445788999887 3221        112222222222222211  111


Q ss_pred             cccccccchHHhh------h----ccchhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcCC--CchHHHhHH
Q 039154           81 VEHAHVLLPPLET------L----CTVEETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAGE--WFTARVSAC  146 (211)
Q Consensus        81 ~~~~~~llp~l~~------l----~~d~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d~--~~~vR~~~a  146 (211)
                      +...+.|+|.+..      +    -.|+.|.+|.-|++-+..++..++...  +...+...+.+..-|.  .|...|.+.
T Consensus       283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai  362 (576)
T KOG2549|consen  283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAI  362 (576)
T ss_pred             hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence            2344555555433      2    235678999999999999999998853  4455665665555554  588899998


Q ss_pred             hHHHhhcc
Q 039154          147 GLFHIAYP  154 (211)
Q Consensus       147 ~~l~~l~~  154 (211)
                      ..+..+..
T Consensus       363 ~gL~~lg~  370 (576)
T KOG2549|consen  363 AGLSELGH  370 (576)
T ss_pred             HHHHHhhh
Confidence            88888755

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=87.41  E-value=22  Score=32.86  Aligned_cols=134  Identities=13%  Similarity=0.035  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHHHHH---HhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccccccchHHhhh
Q 039154           22 DIQLRLNSIRRLSTIAR---ALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETL   94 (211)
Q Consensus        22 ~~~~R~~a~~~l~~ia~---~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~~~llp~l~~l   94 (211)
                      |...+.+++--+..+++   +|..+-.+.+..--+.+ ..|++-.|..++--++-+++--.|.   .....-.+..+.++
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~  469 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM  469 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence            44555566544444443   33333333333333333 6799999998887777777665554   23345567888899


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           95 CTVEETCMRDKAVESLCRIGSQMRESD----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        95 ~~d~~~~VR~~a~~~l~~l~~~l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      +.+....+|..+...|..+.-..+.+.    ..+.-...+..+++|+.|.|-.-|-.++-.+...
T Consensus       470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            999999999999999998865554433    3344567778899999999998888887776544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=86.82  E-value=1.1  Score=24.70  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=22.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .++.+.+|++.+++.+++.++..|.+++
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            4677777888778888888888887765

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF05536 Neurochondrin: Neurochondrin

Probab=86.59  E-value=25  Score=32.03  Aligned_cols=175  Identities=15%  Similarity=0.148  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHH--HhCCcchhhchhhhhhh-cCCChH-HHHHHHHHHHhccccccCccc--cccccchHHhhhccchh
Q 039154           26 RLNSIRRLSTIAR--ALGEERTPKELIPFLSA-NNDDDD-EVLLAMAEELGVFIPYVGGVE--HAHVLLPPLETLCTVEE   99 (211)
Q Consensus        26 R~~a~~~l~~ia~--~lg~~~~~~~L~p~l~~-~~D~~~-~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~l~~d~~   99 (211)
                      +.-++.-|+.++.  .+.....-..-+|.+.+ +..... ++-..+.+.|..++..-.|..  ....-+|.+.+...+ +
T Consensus        74 ~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~  152 (543)
T PF05536_consen   74 LSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-Q  152 (543)
T ss_pred             HHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-C
Confidence            4445555555543  11111233455788888 544444 777777777777775432221  122234555555444 6


Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHH------HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---hH------HHHHH
Q 039154          100 TCMRDKAVESLCRIGSQMRESDLV------DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DI------LKTEL  164 (211)
Q Consensus       100 ~~VR~~a~~~l~~l~~~l~~~~~~------~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~---~~------~~~~l  164 (211)
                      ....+.|.+.+..+....+.+...      ..+++.+.+......-+-|...+..++.+.+..+   ..      ....+
T Consensus       153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l  232 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL  232 (543)
T ss_pred             cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence            778899999999998888754322      2355556555555555567778888888876663   11      34566


Q ss_pred             HHHHHHhcCCCC-HHHHHHHHHhhHHHHhhhCchhhHH
Q 039154          165 RSIYTQLCQDDM-PMVRRSAASNLRKFAATVEPAHLKT  201 (211)
Q Consensus       165 ~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~~~~~~~~  201 (211)
                      ...+..+++... +.=|..+..-...+.+.+|++|+..
T Consensus       233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~  270 (543)
T PF05536_consen  233 RKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFA  270 (543)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcC
Confidence            666666665544 8889999999999999999988643

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=86.34  E-value=27  Score=32.15  Aligned_cols=150  Identities=14%  Similarity=0.051  Sum_probs=89.7

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHH
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL----VDWFIPLVK  131 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~  131 (211)
                      ..|-++-+|..+...|+...+.+..--..-..+-.+--.+.|.+..||....+.+..++...+..+.    .+-+...|.
T Consensus       284 y~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rIL  363 (740)
T COG5537         284 YIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRIL  363 (740)
T ss_pred             ccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            6788999999999999887776543222223344455577999999999999999999999877542    222333333


Q ss_pred             Hh-hcCCCchHHHhHHhHHHhhcc--CCChHHHHHHHHHHHHhcCCCCHHH---HHHHHHhhHHHHh-hhC---chhhH-
Q 039154          132 RL-AAGEWFTARVSACGLFHIAYP--SAPDILKTELRSIYTQLCQDDMPMV---RRSAASNLRKFAA-TVE---PAHLK-  200 (211)
Q Consensus       132 ~l-~~d~~~~vR~~~a~~l~~l~~--~~~~~~~~~l~~~~~~L~~D~~~~V---R~aaa~~l~~~~~-~~~---~~~~~-  200 (211)
                      .+ ..|..- ||.+..+.+..+..  .+...    -..+...+.-|..|.=   +.....++.++.. .+.   |++++ 
T Consensus       364 E~~r~D~d~-VRi~sik~l~~lr~lg~L~~S----eIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~  438 (740)
T COG5537         364 EFLRTDSDC-VRICSIKSLCYLRILGVLSSS----EILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKT  438 (740)
T ss_pred             HHHhhccch-hhHHHHHHHHHHHHhcccchh----HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence            33 445555 99988777766522  23222    2333444555666663   3333333333322 222   33432 


Q ss_pred             HHHHHHHHhh
Q 039154          201 TDIMSIFEDL  210 (211)
Q Consensus       201 ~~llp~~~~L  210 (211)
                      ..++|.+.+.
T Consensus       439 n~lL~a~~qg  448 (740)
T COG5537         439 NRLLEAMKQG  448 (740)
T ss_pred             hhHHHHHHhh
Confidence            4577766543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.14  E-value=18  Score=34.37  Aligned_cols=148  Identities=16%  Similarity=0.095  Sum_probs=93.8

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcC-C-ChHHHHHHHHHHHhccccccC------cc
Q 039154           11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSANN-D-DDDEVLLAMAEELGVFIPYVG------GV   81 (211)
Q Consensus        11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~-D-~~~~VR~~~a~~L~~l~~~ig------~~   81 (211)
                      |..|-+-..+.. ++-|..|+..|..+++..-.+-...-+-|++..++ | .+++.-..+.+.+-.+...=.      .+
T Consensus        24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds  103 (970)
T KOG0946|consen   24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS  103 (970)
T ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence            555666665555 67799999999988875544433344445555422 2 345555555555544433210      00


Q ss_pred             c--------------cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh-----hHHHHHHhhcCCCchHH
Q 039154           82 E--------------HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW-----FIPLVKRLAAGEWFTAR  142 (211)
Q Consensus        82 ~--------------~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~-----l~p~i~~l~~d~~~~vR  142 (211)
                      .              -.+..+..+..+.+..+..||.+++.-+..+...-|.+-..-.     =+..+..+..|....+|
T Consensus       104 ~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IR  183 (970)
T KOG0946|consen  104 TQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIR  183 (970)
T ss_pred             hhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhc
Confidence            0              0123355666677777889999999999999999888753322     23344556778888899


Q ss_pred             HhHHhHHHhhccCCCh
Q 039154          143 VSACGLFHIAYPSAPD  158 (211)
Q Consensus       143 ~~~a~~l~~l~~~~~~  158 (211)
                      ..+...+.++....+.
T Consensus       184 Ne~iLlL~eL~k~n~~  199 (970)
T KOG0946|consen  184 NEAILLLSELVKDNSS  199 (970)
T ss_pred             hhHHHHHHHHHccCch
Confidence            8888888888776664

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.80  E-value=6.3  Score=39.80  Aligned_cols=68  Identities=19%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             hHHHHH-HhhcCCCchHHHhHHhHHHhh--ccCCC-h-HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          126 FIPLVK-RLAAGEWFTARVSACGLFHIA--YPSAP-D-ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       126 l~p~i~-~l~~d~~~~vR~~~a~~l~~l--~~~~~-~-~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      ++-.++ ..+.+.+|+||.++.+-+..+  ...++ . ..++++.....++++|..-+||+.|+..|..+...
T Consensus      1527 ~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1527 FLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhc
Confidence            333344 345567899999987666543  22333 2 26889999999999999999999999999888764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=85.66  E-value=22  Score=30.44  Aligned_cols=143  Identities=17%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-------hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cc
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGEER-------TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VE   82 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-------~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~   82 (211)
                      .+.-.|+.++..++.-+|+++..|-.......       ...+++|.+.. ...++.+|-+++.+.+..++.+-.+  .-
T Consensus        86 dLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleai  165 (524)
T KOG4413|consen   86 DLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAI  165 (524)
T ss_pred             HHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHh
Confidence            45667888999999999999988876555433       24567788888 7788999999999999988764221  11


Q ss_pred             cccccchH--HhhhccchhhHHHHHHHHHHHHHHhhcCh--hHHH-HhhHHHH-HHhhcCCCchHHHhHHhHHHhhccC
Q 039154           83 HAHVLLPP--LETLCTVEETCMRDKAVESLCRIGSQMRE--SDLV-DWFIPLV-KRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        83 ~~~~llp~--l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~-~~l~p~i-~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      +.+.++..  +.++.--.++-+|....+-+.++...-+.  ..++ +-++..+ ..|..-..--||..|.+....+...
T Consensus       166 FeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet  244 (524)
T KOG4413|consen  166 FESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET  244 (524)
T ss_pred             cccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH
Confidence            22223322  34555555667777777777777655332  1222 2244433 3344435555777777777666543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.52  E-value=27  Score=33.78  Aligned_cols=55  Identities=16%  Similarity=-0.023  Sum_probs=30.1

Q ss_pred             HHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       141 vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +|...-.++..+...--++.+..+++....+++.++..+=-.+.-.+.++++...
T Consensus       105 iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye  159 (1010)
T KOG1991|consen  105 IRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE  159 (1010)
T ss_pred             HHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence            4444444443332222123456666666666666666666666666666666654

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=85.37  E-value=15  Score=28.38  Aligned_cols=100  Identities=16%  Similarity=0.079  Sum_probs=61.9

Q ss_pred             cCCChHHHHHHHHHHHhccccccCc-----ccc--------------ccccc---hHHhhhccch-hhHHHHHHHHHHHH
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGG-----VEH--------------AHVLL---PPLETLCTVE-ETCMRDKAVESLCR  112 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~-----~~~--------------~~~ll---p~l~~l~~d~-~~~VR~~a~~~l~~  112 (211)
                      ..|.++.||.+++..+..+.+....     ++.              ...|.   -.|...++.| +..+--...+++..
T Consensus        49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~  128 (182)
T PF13251_consen   49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV  128 (182)
T ss_pred             HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            6789999999999888777663210     100              01111   1122233444 45666678888888


Q ss_pred             HHhhcChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154          113 IGSQMRESD----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus       113 l~~~l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      +.+.-+-+.    +-..++..++.+..+..-.||.++..+++.+...
T Consensus       129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  129 LVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            887765543    3344455556666667778999998888877554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=85.08  E-value=2  Score=32.32  Aligned_cols=131  Identities=18%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             CChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---H-HHHhhHHHHHHh
Q 039154           58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---D-LVDWFIPLVKRL  133 (211)
Q Consensus        58 D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~-~~~~l~p~i~~l  133 (211)
                      ...++||..+.-.+..+.+ ..++++.+.+-..+..+..+.+..-...++..+..+.+..+.-   . ..+-+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            4566677777666666543 2345556667777777777776666666666666665553321   1 122344444444


Q ss_pred             hc--CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcC-CCCHH-HHHHHHHhhHH
Q 039154          134 AA--GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ-DDMPM-VRRSAASNLRK  189 (211)
Q Consensus       134 ~~--d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~-D~~~~-VR~aaa~~l~~  189 (211)
                      +.  .++-.+-.++++++..-|-.-.-.  ..++..+.+.++.+ +++.. ||--|+-.|.+
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            44  445556667777776544322111  35677777788884 44454 67766665543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=85.05  E-value=1.2  Score=37.40  Aligned_cols=108  Identities=14%  Similarity=0.066  Sum_probs=54.2

Q ss_pred             cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HH--------HHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154           83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DL--------VDWFIPLVKRLAAGEWFTARVSACGLFHIA  152 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~--------~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l  152 (211)
                      ....++.++...  ..+..+..+...-+..++..-+.-  .+        ..-.-|++. +.+.+.+-+...++.++..+
T Consensus        56 ~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   56 YASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSL  132 (312)
T ss_dssp             ------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence            344445555554  334555555555555555544310  00        113455555 66666777888888888888


Q ss_pred             ccCCChHHH---HHHHHHHHHhcCC----CCHHHHHHHHHhhHHHHhh
Q 039154          153 YPSAPDILK---TELRSIYTQLCQD----DMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       153 ~~~~~~~~~---~~l~~~~~~L~~D----~~~~VR~aaa~~l~~~~~~  193 (211)
                      ...-+....   ..+++.|++.+.+    ++.++...|++.|..+...
T Consensus       133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~  180 (312)
T PF03224_consen  133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS  180 (312)
T ss_dssp             HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred             HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence            776665522   3566666666554    4456778888888877653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=84.87  E-value=2.5  Score=37.66  Aligned_cols=147  Identities=15%  Similarity=0.153  Sum_probs=92.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---------cchhhchhhhhhh----cCCChHHHHHHHHHHHhccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE---------ERTPKELIPFLSA----NNDDDDEVLLAMAEELGVFIPY   77 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~---------~~~~~~L~p~l~~----~~D~~~~VR~~~a~~L~~l~~~   77 (211)
                      -+.....+.|.....|..+.=.++.|..+|-.         ++....++--...    +.-+.+.||..+.+.||++.++
T Consensus       435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv  514 (728)
T KOG4535|consen  435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF  514 (728)
T ss_pred             HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence            45566667677778888887777777655422         1222333322221    4557788999999999998886


Q ss_pred             cCc-------cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhc----ChhHHHHhhHHHHHHhhcC-CCchHHHhH
Q 039154           78 VGG-------VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQM----RESDLVDWFIPLVKRLAAG-EWFTARVSA  145 (211)
Q Consensus        78 ig~-------~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l----~~~~~~~~l~p~i~~l~~d-~~~~vR~~~  145 (211)
                      +.+       +.....+...+..-.-.....||..+...++++.+.-    ..-.....++|.+..|..| .+|.||..+
T Consensus       515 lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A  594 (728)
T KOG4535|consen  515 LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA  594 (728)
T ss_pred             HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence            542       1111111111222222334678999999999997763    3334556778888877665 679999999


Q ss_pred             HhHHHhhccCCC
Q 039154          146 CGLFHIAYPSAP  157 (211)
Q Consensus       146 a~~l~~l~~~~~  157 (211)
                      |..+.......+
T Consensus       595 A~aL~vp~~re~  606 (728)
T KOG4535|consen  595 AAALSVPGKREQ  606 (728)
T ss_pred             hhhhcCCCCccc
Confidence            988866655444

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=84.27  E-value=8.8  Score=34.54  Aligned_cols=143  Identities=17%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHH---HHHHHHhCCcchhhchhhhhhh-----c--------CCChHHHHHHHHHHHh
Q 039154           11 IAVLTDELKND--DIQLRLNSIRRL---STIARALGEERTPKELIPFLSA-----N--------NDDDDEVLLAMAEELG   72 (211)
Q Consensus        11 l~~l~~~l~s~--~~~~R~~a~~~l---~~ia~~lg~~~~~~~L~p~l~~-----~--------~D~~~~VR~~~a~~L~   72 (211)
                      ++...+.+.++  +...|..+++-+   ..+....++... +.+.|.+..     .        ..++.+.|..+=++||
T Consensus       321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG  399 (501)
T PF13001_consen  321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG  399 (501)
T ss_pred             HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence            56666677777  455565666666   666666655432 233333322     1        1245567777777777


Q ss_pred             ccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCCchHHHh
Q 039154           73 VFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEWFTARVS  144 (211)
Q Consensus        73 ~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~~~vR~~  144 (211)
                      .+++-...  .+..+.+--+|..+ +++..+||.+.-++|..+...+..-      .....+.-++.....+....+|++
T Consensus       400 ~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~  478 (501)
T PF13001_consen  400 LLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYA  478 (501)
T ss_pred             HHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence            77764322  11222333334444 6667777777777777777666431      112222223333344445567777


Q ss_pred             HHhHHHhhccC
Q 039154          145 ACGLFHIAYPS  155 (211)
Q Consensus       145 ~a~~l~~l~~~  155 (211)
                      +.+-...+++.
T Consensus       479 avk~an~~fpf  489 (501)
T PF13001_consen  479 AVKYANACFPF  489 (501)
T ss_pred             HHHHHHHhCCc
Confidence            77666665554

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.14  E-value=14  Score=26.83  Aligned_cols=86  Identities=9%  Similarity=0.032  Sum_probs=62.3

Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcCC---CCHHHHHHHHHhhHHHHhhhC
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQD---DMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~D---~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      ...+..+.+-.+.++..+...+..++..+....|..+     ..+++..+.+++..   ..+.||+-+..-+......++
T Consensus        36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4445555555566788889999999999988888862     23566668888886   478999999999999999998


Q ss_pred             ch-hhHHHHHHHHHh
Q 039154          196 PA-HLKTDIMSIFED  209 (211)
Q Consensus       196 ~~-~~~~~llp~~~~  209 (211)
                      .+ --...+...+..
T Consensus       116 ~~~~~~~~~~~~y~~  130 (133)
T cd03561         116 GHSEDLPGIEDAYKL  130 (133)
T ss_pred             CCCccchHHHHHHHH
Confidence            64 223344444433

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.02  E-value=22  Score=35.86  Aligned_cols=185  Identities=12%  Similarity=0.113  Sum_probs=120.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhh----hhh-cCCChHHHHHHHHHHHhccccccCcc--cc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPF----LSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~----l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~   83 (211)
                      +..+...|.--|+..+..|.+.++++......+..+. ++|.    +.+ +.|++..||...-..+..+...++..  .+
T Consensus        43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~  121 (1312)
T KOG0803|consen   43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF  121 (1312)
T ss_pred             HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            6677778888899999999999998876655554433 3433    334 78999999999988888877766532  34


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHHHhhc--------C-----------CCch
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVKRLAA--------G-----------EWFT  140 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~~l~~--------d-----------~~~~  140 (211)
                      ...+.|++.-...|....|-.+|-.++......-...    .+...+.++..+...        |           ...|
T Consensus       122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~R  201 (1312)
T KOG0803|consen  122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQR  201 (1312)
T ss_pred             HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHH
Confidence            4566677666667777788777777777765521111    112233444433210        1           1235


Q ss_pred             HHHhHHhHHHhhccCCChH---H-----HH--HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          141 ARVSACGLFHIAYPSAPDI---L-----KT--ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       141 vR~~~a~~l~~l~~~~~~~---~-----~~--~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      |-.++...+..+....|..   .     .+  .-...|-++.+++.|.||.+...-+-.+.+.+.+
T Consensus       202 vi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~  267 (1312)
T KOG0803|consen  202 VISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN  267 (1312)
T ss_pred             HHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence            5555555555555444443   1     11  1346788999999999999999888887776653

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=83.92  E-value=14  Score=26.62  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHHH-hhHHHHHHhhcCCCchHHHhHHhH
Q 039154          100 TCMRDKAVESLCRIGSQMRESDLVD-WFIPLVKRLAAGEWFTARVSACGL  148 (211)
Q Consensus       100 ~~VR~~a~~~l~~l~~~l~~~~~~~-~l~p~i~~l~~d~~~~vR~~~a~~  148 (211)
                      ..+...+.+++.....-.+.+.+.+ .+++.+.++.+++..  |..|+++
T Consensus       100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c  147 (148)
T PF08389_consen  100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC  147 (148)
T ss_dssp             HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence            5566666666666666666655544 266666666655543  4444443

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=83.87  E-value=2.3  Score=22.09  Aligned_cols=14  Identities=14%  Similarity=-0.190  Sum_probs=7.9

Q ss_pred             chHHHhHHhHHHhh
Q 039154          139 FTARVSACGLFHIA  152 (211)
Q Consensus       139 ~~vR~~~a~~l~~l  152 (211)
                      |.||+.++..++.+
T Consensus         1 ~~vR~~aa~aLg~~   14 (30)
T smart00567        1 PLVRHEAAFALGQL   14 (30)
T ss_pred             CHHHHHHHHHHHHc
Confidence            44566666665554

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=83.76  E-value=2.2  Score=36.79  Aligned_cols=48  Identities=27%  Similarity=0.342  Sum_probs=24.3

Q ss_pred             hHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       144 ~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      -++..+|.++..++. ..+.-+...+.+|.|.+..||+-|++.|+.+++
T Consensus        43 lasq~ip~~fk~fp~-la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~   90 (460)
T KOG2213|consen   43 LASQFIPRFFKHFPS-LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCK   90 (460)
T ss_pred             HHHHHHHHHHhhCch-hhhHHHHhhhccccccchhhHHHHHhccchhcc
Confidence            344444444444432 133445555555555555555555555555554

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=83.25  E-value=12  Score=39.83  Aligned_cols=193  Identities=15%  Similarity=0.126  Sum_probs=113.2

Q ss_pred             CcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC------c--chhhchhhhhhh--cCCChHHHHHHHHHHHh-ccc
Q 039154            7 PLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGE------E--RTPKELIPFLSA--NNDDDDEVLLAMAEELG-VFI   75 (211)
Q Consensus         7 ~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~------~--~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~-~l~   75 (211)
                      +.+|-..+-..+..+|.+.|.++...+..+-.-.-.      -  ++.+..+..+..  ..|.++.+|...-..+. .+.
T Consensus       479 ~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~  558 (2341)
T KOG0891|consen  479 TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFD  558 (2341)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchh
Confidence            345556667778899999999985555443221111      1  224555555555  56888888888877776 221


Q ss_pred             cccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh--------hcCCCchHHHhHHh
Q 039154           76 PYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL--------AAGEWFTARVSACG  147 (211)
Q Consensus        76 ~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l--------~~d~~~~vR~~~a~  147 (211)
                      +.    -.....+-.+.....|+.-.+|..++..++.++..-+     .+++|.+.+.        --+..-++...++.
T Consensus       559 ~~----laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~  629 (2341)
T KOG0891|consen  559 AQ----LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAK  629 (2341)
T ss_pred             hh----hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHH
Confidence            11    1122233445566678888888888888777666433     4445544332        22222233444444


Q ss_pred             HHHhhccCC---ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch--hhHHHHHHHHH
Q 039154          148 LFHIAYPSA---PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA--HLKTDIMSIFE  208 (211)
Q Consensus       148 ~l~~l~~~~---~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~--~~~~~llp~~~  208 (211)
                      .++.+....   -..+...+.-.....++|.+..|=+++...+++++.+-|.+  .....+++.+.
T Consensus       630 ~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~  695 (2341)
T KOG0891|consen  630 LLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLII  695 (2341)
T ss_pred             HhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHH
Confidence            443332211   11134455566677788999999999999999999988832  22235555553

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=83.06  E-value=8.8  Score=32.45  Aligned_cols=57  Identities=14%  Similarity=-0.018  Sum_probs=38.1

Q ss_pred             CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       136 d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      +.+.....+....|..-+..++.+.-+.+...|.+-++|..+.||++-...+++...
T Consensus        34 E~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   34 ESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW   90 (339)
T ss_pred             hcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence            344555666655555554444444456777888888888888888888888887765

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.92  E-value=7.3  Score=28.28  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG   80 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~   80 (211)
                      .+..+...|++.|+.+...|+..|..+.+-.|..-        .-.+++.++.......+.||.-+.+-+......++.
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            37788888999999999999999999888888631        111222222211134667888777777776665554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=82.78  E-value=2.2  Score=24.51  Aligned_cols=22  Identities=14%  Similarity=0.205  Sum_probs=10.4

Q ss_pred             cchHHhhhccchhhHHHHHHHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVE  108 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~  108 (211)
                      +...+..-+.|+++.||++|++
T Consensus        19 v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen   19 VQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             HHHHHHHHhcCCChHHHHHHHH
Confidence            3344444444555555555443

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=82.56  E-value=33  Score=30.04  Aligned_cols=188  Identities=16%  Similarity=0.160  Sum_probs=92.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccC---ccc-
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVG---GVE-   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig---~~~-   82 (211)
                      +..+++.+.|+|+..|.....-++.|-......+  .++.+...+.+ . ......--..+-+-+|.+.+-..   .++ 
T Consensus       135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh  214 (409)
T PF01603_consen  135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEH  214 (409)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHH
Confidence            7789999999999999999888888765554332  23333333332 1 11111111222222233222111   011 


Q ss_pred             ---cccccchHH----------------hhhcc-chh---hHHH--------------HHHHHHHHHHHhhcChhHHHHh
Q 039154           83 ---HAHVLLPPL----------------ETLCT-VEE---TCMR--------------DKAVESLCRIGSQMRESDLVDW  125 (211)
Q Consensus        83 ---~~~~llp~l----------------~~l~~-d~~---~~VR--------------~~a~~~l~~l~~~l~~~~~~~~  125 (211)
                         ....++|+.                ..+++ |..   ..+|              ..-++-+..+++.+++++..+.
T Consensus       215 ~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i  294 (409)
T PF01603_consen  215 KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI  294 (409)
T ss_dssp             HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH
Confidence               112233322                22222 222   1111              1344567777777888877777


Q ss_pred             hHHHHHHh---hcCCCchHHHhHHhHHHh-----hccCCChHHHHHHHHHHHHhcCCC-CHHHHHHHHHhhHHHHhhhCc
Q 039154          126 FIPLVKRL---AAGEWFTARVSACGLFHI-----AYPSAPDILKTELRSIYTQLCQDD-MPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       126 l~p~i~~l---~~d~~~~vR~~~a~~l~~-----l~~~~~~~~~~~l~~~~~~L~~D~-~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      ..|++.++   .+++++.|-..+...+..     +...........++|.+.+.++.. ...||..+...+.-+.+ +++
T Consensus       295 ~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~-~d~  373 (409)
T PF01603_consen  295 MVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME-MDP  373 (409)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT-TSH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hCH
Confidence            66666555   557777776666555432     111111112333444443333322 46788888888877766 555


Q ss_pred             hhh
Q 039154          197 AHL  199 (211)
Q Consensus       197 ~~~  199 (211)
                      +.+
T Consensus       374 ~lf  376 (409)
T PF01603_consen  374 KLF  376 (409)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.38  E-value=21  Score=32.37  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC
Q 039154          100 TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM  176 (211)
Q Consensus       100 ~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~  176 (211)
                      ..-|.+..+.+..++..+|.++..+.+.-.++.  +..+|+.=.++...+..++..+..+   .-.+++..+.+|  +..
T Consensus       366 ~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q  441 (559)
T KOG2081|consen  366 FEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQ  441 (559)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC--ccc
Confidence            356999999999999999999988887755555  7889999999999999999888876   234444444443  222


Q ss_pred             HHHHHHHHHhhHHHHhhhCch
Q 039154          177 PMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       177 ~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      ..+|.++..-+|.+.+.+...
T Consensus       442 ~~~~~ts~ll~g~~~ew~~~~  462 (559)
T KOG2081|consen  442 APLRYTSILLLGEYSEWVEQH  462 (559)
T ss_pred             hhHHHHHHHHHHHHHHHHHhC
Confidence            349999999999999998754

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=82.06  E-value=3.9  Score=36.80  Aligned_cols=95  Identities=23%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcc-hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc------ccccchHH
Q 039154           20 NDDIQLRLNSIRRLSTIARALGEER-TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH------AHVLLPPL   91 (211)
Q Consensus        20 s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~------~~~llp~l   91 (211)
                      +++...|..+-..|+.+++....-- ..-.++.++.+ +.++.++||.++-++|..++..+.....      ...+.-++
T Consensus       385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~  464 (501)
T PF13001_consen  385 SEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLL  464 (501)
T ss_pred             cccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            5678889999999999998877643 34567777777 9899999999999999998887653221      11222234


Q ss_pred             hhhccchhhHHHHHHHHHHHHHH
Q 039154           92 ETLCTVEETCMRDKAVESLCRIG  114 (211)
Q Consensus        92 ~~l~~d~~~~VR~~a~~~l~~l~  114 (211)
                      .....+....+|..|++-.....
T Consensus       465 ~~~~~~~~~~~R~~avk~an~~f  487 (501)
T PF13001_consen  465 LSYIQSEVRSCRYAAVKYANACF  487 (501)
T ss_pred             HhhccchhHHHHHHHHHHHHHhC
Confidence            44445666788888887655443

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=81.90  E-value=4.9  Score=30.15  Aligned_cols=97  Identities=15%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             Hhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHH
Q 039154           91 LETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTEL  164 (211)
Q Consensus        91 l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l  164 (211)
                      +..+.. ...+.+|..+.-.+.++. ...++...+.+-.++..+..+....-...+...+..+++....-     ..+.+
T Consensus         9 L~~L~~~~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~   87 (157)
T PF11701_consen    9 LTSLDMLRQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGF   87 (157)
T ss_dssp             HHHHHCTTTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTH
T ss_pred             HHHhcccCCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhH
Confidence            444444 556889999999999986 44556667788888888877666556666666666676665432     24567


Q ss_pred             HHHHHHhcC--CCCHHHHHHHHHhhH
Q 039154          165 RSIYTQLCQ--DDMPMVRRSAASNLR  188 (211)
Q Consensus       165 ~~~~~~L~~--D~~~~VR~aaa~~l~  188 (211)
                      .+.+..++.  -++..+-.++++.+.
T Consensus        88 ~~~l~~~~~~~~~~~~~~~~~lell~  113 (157)
T PF11701_consen   88 LESLLPLASRKSKDRKVQKAALELLS  113 (157)
T ss_dssp             HHHHHHHHH-CTS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            777777777  666777776666553

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.75  E-value=8.4  Score=32.42  Aligned_cols=100  Identities=15%  Similarity=0.069  Sum_probs=63.0

Q ss_pred             hhh-cCCChHHHHHHHHHHHhccccccCccccccc---cchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-HHHHhhH
Q 039154           53 LSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV---LLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-DLVDWFI  127 (211)
Q Consensus        53 l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~---llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~  127 (211)
                      +.+ +.+.+|.||+++.+.+-.+..- |......+   .++.+.++++|.++  -.-|+.++.+++++-.-. ..-+.++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~   84 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL   84 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            445 7889999999999888776543 32222222   24557777777776  555667777777664332 2233355


Q ss_pred             HHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154          128 PLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus       128 p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      ..+..+..|+.|..-...|-++.+++..
T Consensus        85 k~l~~~~~~p~~~lad~~cmlL~NLs~~  112 (353)
T KOG2973|consen   85 KVLMDMLTDPQSPLADLICMLLSNLSRD  112 (353)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhccC
Confidence            5566667788777666666666666544

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.74  E-value=39  Score=32.29  Aligned_cols=149  Identities=10%  Similarity=-0.037  Sum_probs=93.3

Q ss_pred             chhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhHHHHHHHHHHHHHHhhc-----Ch--
Q 039154           48 ELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQM-----RE--  119 (211)
Q Consensus        48 ~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l-----~~--  119 (211)
                      .|-.++.+.-+.+|.||+.+-+.|.....    .  ..+.+.++.-+.++. +..+|.+|.-.+++.++.-     +.  
T Consensus         6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~----q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~   79 (960)
T KOG1992|consen    6 TLANYLLQTLSPDPSVRKPAERALRSLEG----Q--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI   79 (960)
T ss_pred             HHHHHHHhcCCCCCccCchHHHHHHHhcc----C--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence            34445555567778899999888887433    2  335555555555555 5788999999999888841     11  


Q ss_pred             ---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          120 ---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       120 ---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                         +.-.+.+-..|..+.-.....+-+-..+.+.-++..-=++-|..|+|-+.+-++-.+..|-.+....-+.+-+.+-+
T Consensus        80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~  159 (960)
T KOG1992|consen   80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP  159 (960)
T ss_pred             ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence               11233344444445445555666666666665554433335888999988888877777666666666777777666


Q ss_pred             hhhHHH
Q 039154          197 AHLKTD  202 (211)
Q Consensus       197 ~~~~~~  202 (211)
                      +...+.
T Consensus       160 efrSda  165 (960)
T KOG1992|consen  160 EFRSDA  165 (960)
T ss_pred             ccccHH
Confidence            544433

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=80.85  E-value=3.8  Score=29.41  Aligned_cols=52  Identities=19%  Similarity=0.142  Sum_probs=34.5

Q ss_pred             HHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          141 ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       141 vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      +-..+|.=++.++...+.-    ..-.......+|+++++++||..|..++..+..
T Consensus        60 ~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   60 TLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             eeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3444556566665554332    123456778899999999999999999987753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=80.85  E-value=14  Score=38.36  Aligned_cols=111  Identities=16%  Similarity=0.093  Sum_probs=81.0

Q ss_pred             cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-hH-----HH-HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-SD-----LV-DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-~~-----~~-~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      .|..+-+.+.....+++..|+..|+.+|.+++.++-. ++     .+ ..+=|+..-+.+.....||..+..++..+...
T Consensus      1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076       1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred             HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            3445556677766666778999999999999887643 22     23 34456666677777889999999999888776


Q ss_pred             CChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          156 APDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .+..   -|+.++..|-.-..|+.+.+=+.+.+.+..+.+-
T Consensus      1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076       1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred             HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence            6655   3677777777777888877777788888776543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=80.74  E-value=9.5  Score=28.73  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154           11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      +..++.-||.+. ...|.++++-++.+. ++.|-+-+ ..-.....  ..+.+........-. ..... -+.+......
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilG-ALDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~ee~y~~vv   87 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILG-ALDPYKHK-SIQKSLDSKSSENSNDESTDISLPM-MGISP-SSEEYYPTVV   87 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhcc-ccCcHHHh-cccccCCccccccccccchhhHHhh-ccCCC-chHHHHHHHH
Confidence            778888888775 888999999998764 22222211 00000000  011111111111110 01100 1123334445


Q ss_pred             chHHhhhccchhh-HHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhc
Q 039154           88 LPPLETLCTVEET-CMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAGEWFTARVSACGLFHIAY  153 (211)
Q Consensus        88 lp~l~~l~~d~~~-~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~  153 (211)
                      +..|...++|..- .-+..++.++..+.+.++..-  .-..++|.+.+......-+.|...-..+..+.
T Consensus        88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            6667777788864 455677888888887776653  34567777777766544467776666655543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=80.39  E-value=21  Score=26.34  Aligned_cols=84  Identities=10%  Similarity=0.042  Sum_probs=58.5

Q ss_pred             hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154          126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAATVEPAHL  199 (211)
Q Consensus       126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~~~~  199 (211)
                      .+-.+++-.+..+..+=..+..++..+...+|..     ....|+..+.+++. ...+.||+-+..-+...+..|+.+--
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~  121 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQ  121 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3334444445566777777788888887777775     35678888888887 46689999999999999999976533


Q ss_pred             HHHHHHHHHh
Q 039154          200 KTDIMSIFED  209 (211)
Q Consensus       200 ~~~llp~~~~  209 (211)
                      ...+.-.+..
T Consensus       122 l~~i~~~y~~  131 (142)
T cd03569         122 LKYVVDTYQI  131 (142)
T ss_pred             cHHHHHHHHH
Confidence            3334444433

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PHA02861 uncharacterized protein; Provisional

Probab=80.26  E-value=21  Score=26.30  Aligned_cols=128  Identities=14%  Similarity=0.067  Sum_probs=79.0

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA  135 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~  135 (211)
                      .-..++.|+.++.+-+-=-..-....+..-.+.-.|+.+-+|.+..-++    .+..+.+.++.+.+. ....+|+-+..
T Consensus        12 ~~~~~DdI~~~i~dYiyWSs~~~r~Re~AG~vf~vl~SFr~DA~~VFg~----~lr~fVk~~~~~~v~-~~~~~I~~~l~   86 (149)
T PHA02861         12 CLNRDDDIRQIIVDYIYWSMYSYRSRSPAGKVFQVLKMFRRDSEIVFGE----NFRHIVKNFKTLGIE-DTVQAVKCFTV   86 (149)
T ss_pred             cCCccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHHH----HHHHHHHhCCccchH-hHHHHHHHHhc
Confidence            4456788999998888544433444555667888888887777655543    333444444443332 23334555555


Q ss_pred             CCCchHHHhH--HhHHHhhccCCChH-----HHHHHHHHHHHhcCCCC-HHHHHHHHHhhHH
Q 039154          136 GEWFTARVSA--CGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDM-PMVRRSAASNLRK  189 (211)
Q Consensus       136 d~~~~vR~~~--a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~  189 (211)
                      +++ ..|.+|  ..++...+...|.+     ...+.+..+..|+.|.+ +.||..+.-.|.+
T Consensus        87 ~en-~irE~cAiIGL~A~~AeYWGged~Pt~~S~~vl~l~~~Llsd~d~~~i~~~l~vRl~k  147 (149)
T PHA02861         87 GKN-ALRESVSMVDLCASLAEYWGGEDLPTNDSLQALKLMTILLSDDDYSFIELCLRVRLKK  147 (149)
T ss_pred             ccH-HHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence            554 345544  46666777777765     35677888999999998 6677666555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		7e-66
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		7e-66
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		7e-66
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		7e-66
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		3e-65
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		3e-65
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		3e-64
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		1e-15

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNL 211

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNL 211

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S L +FA  +E  ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  244 bits (622), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/203 (59%), Positives = 151/203 (74%)
Query: 8   LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAM 67
           LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVLLA+
Sbjct: 3   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL   F+
Sbjct: 63  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 RKFAATVEPAHLKTDIMSIFEDL 210
            +FA  +E  ++K++I+ +F +L
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNL 205

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  244 bits (622), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/203 (59%), Positives = 151/203 (74%)
Query: 8   LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAM 67
           LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVLLA+
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL   F+
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 RKFAATVEPAHLKTDIMSIFEDL 210
            +FA  +E  ++K++I+ +F +L
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNL 203

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  240 bits (613), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 150/205 (73%)
Query: 6   EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLL 65
           + LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW 125
           A+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL   
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185
           F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD P VRR+AAS
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLRKFAATVEPAHLKTDIMSIFEDL 210
            L +FA  +E  ++K++I+  F +L
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNL 205

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 8   LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-FLSANNDDDDEVLLA 66
           LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ER  + L+P  +    D    V LA
Sbjct: 6   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLA 65
Query: 67  MAEELGVFIPYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDL 122
           + E    ++P + G          L +LC          +R+ A  +L ++  +  +   
Sbjct: 66  IIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 121
Query: 123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMV 179
               IP V  ++    +  R++   LF I   S     DI    +     ++  D +  V
Sbjct: 122 HATIIPKVLAMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 179
Query: 180 RRSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
           R + A +L+K    ++ + L++++  I E LT
Sbjct: 180 RFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-60
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-18
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-15
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-15
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	9e-12
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  197 bits (503), Expect = 1e-60
 Identities = 123/209 (58%), Positives = 154/209 (73%)

Query: 2   AMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD 61
           A  D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+D
Sbjct: 3   ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED 62

Query: 62  EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESD 121
           EVLLA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SD
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 122 LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
           L   F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182

Query: 182 SAASNLRKFAATVEPAHLKTDIMSIFEDL 210
           +AAS L +FA  +E  ++K++I+ +F +L
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNL 211

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 81.6 bits (201), Expect = 3e-18
 Identities = 36/202 (17%), Positives = 83/202 (41%), Gaps = 2/202 (0%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDE-VLLAMAE 69
           + +   +LK++  ++RLN I  L  +   +G  +  + L+P +    +D    V LA+ E
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424

Query: 70  ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL 129
            + +    +G       L              +R+ A  +L ++  +  +       IP 
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 484

Query: 130 VKRLAAGEWFTARVSACGLFH-IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
           V  ++    +  R++     + ++     DI    +     ++  D +  VR + A +L+
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544

Query: 189 KFAATVEPAHLKTDIMSIFEDL 210
           K    ++ + L++++  I E L
Sbjct: 545 KIGPILDNSTLQSEVKPILEKL 566

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 2/202 (0%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-FLSANNDDDDEVLLAMAE 69
              L   L   D      S   L ++           EL   F +  +DD   V  A A 
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186

Query: 70  ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL 129
           +LG F   +        ++P    L + E+  +R  AVE+   I   + + DL    +P 
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPT 246

Query: 130 VKRLAAGEWFTARVSACGLFH-IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
           +++ A  + +  R      F  +     P+I KT+L   +  L +D    VR +A+  ++
Sbjct: 247 LRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306

Query: 189 KFAATVEPAHLKTDIMSIFEDL 210
           +F   +     +  IMS     
Sbjct: 307 EFCENLSADCRENVIMSQILPC 328

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 71.6 bits (175), Expect = 6e-15
 Identities = 27/206 (13%), Positives = 69/206 (33%), Gaps = 6/206 (2%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-FLSANNDDDDEVLLAMAE 69
                +   +D   +R  +  +L   A+ L  +    E+IP F +  +D+ D V L   E
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225

Query: 70  ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL 129
                   +   +   +++P L      +   +R    +    +   +         +P 
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPA 285

Query: 130 VKRLA---AGEWFTARVSACG--LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            + L      E   A          +++     +++ +++     +L  D    V+ + A
Sbjct: 286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALA 345

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
           S +   +  +   +    ++ +F   
Sbjct: 346 SVIMGLSPILGKDNTIEHLLPLFLAQ 371

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 62.7 bits (152), Expect = 9e-12
 Identities = 25/195 (12%), Positives = 64/195 (32%), Gaps = 2/195 (1%)

Query: 18  LKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-FLSANNDDDDEVLLAMAEELGVFIP 76
           + + +  ++      +  ++  LG++ T + L+P FL+   D+  EV L +   L     
Sbjct: 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392

Query: 77  YVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG 136
            +G  + +  LLP +  L    +  +R   +E +  +  Q+      +    L       
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452

Query: 137 EWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195
             +  R +A      +      +     +      +  D   + R +    +   +    
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512

Query: 196 PAHLKTDIMSIFEDL 210
                  ++     +
Sbjct: 513 QDITTKHMLPTVLRM 527

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 59.3 bits (143), Expect = 1e-10
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 2/183 (1%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-FLSANNDDDDEVLLAMAE 69
           +  + +  ++   ++RL  I  +  +A  LG E   ++L    ++   D    +  A   
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATS 463

Query: 70  ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL 129
            L   +   G       ++P +  +        R   +  +  +     +       +P 
Sbjct: 464 NLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPT 523

Query: 130 VKRLAAGEWFTARVSAC-GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
           V R+A       R +    L  I        L++E++ I  +L QD    V+  A   L 
Sbjct: 524 VLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583

Query: 189 KFA 191
             +
Sbjct: 584 VLS 586

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEE 70
           +  L   LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 104

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLV 130
           LG       G E A   + PL      E+  +R  A  +L  IG +      V+   PL+
Sbjct: 105 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 149

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190
           K L   + +  + +A  L  I        ++        +L +      R+ A + L   
Sbjct: 150 KALKDEDGWVRQSAADALGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 201

Query: 191 AATVEPAH 198
            +     H
Sbjct: 202 KSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 30/174 (17%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEE 70
           + +    L++D   +R  +       A ALG+    + + P + A  D+D  V  A A+ 
Sbjct: 21  VEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKDEDAWVRRAAADA 73

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLV 130
           LG       G E A   + PL      E+  +R  A  +L +IG +           PL+
Sbjct: 74  LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLI 118

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
           K L   +WF    +A  L  I    A + L         +  +D+   VR+SAA
Sbjct: 119 KALKDEDWFVRIAAAFALGEIGDERAVEPLI--------KALKDEDGWVRQSAA 164

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 30/174 (17%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEE 70
           + +    L++D   +R          A ALG+    + + P + A  D+D  V  A A+ 
Sbjct: 16  VEMYIKNLQDDSYYVRRA-------AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADA 68

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLV 130
           LG       G E A   + PL      E+  +R  A  +L +IG +           PL+
Sbjct: 69  LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLI 113

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
           K L   +WF    +A  L  I    A + L         +  +D+   VR+SAA
Sbjct: 114 KALKDEDWFVRIAAAFALGEIGDERAVEPL--------IKALKDEDGWVRQSAA 159

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 23/153 (15%)

Query: 37  ARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT 96
           +        P+++  ++    DD   V  A A  LG       G E A   + PL     
Sbjct: 4   SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKI-----GDERA---VEPLIKALK 55

Query: 97  VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156
            E+  +R  A ++L +IG +      V+   PL+K L   + +  + +A  L  I    A
Sbjct: 56  DEDAWVRRAAADALGQIGDE----RAVE---PLIKALKDEDGWVRQSAAVALGQIGDERA 108

Query: 157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLRK 189
            + L   L+        D+   VR +AA  L +
Sbjct: 109 VEPLIKALK--------DEDWFVRIAAAFALGE 133

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 9/185 (4%)

Query: 11  IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMA 68
           +  L + L +D   +  N+I  +  IA+    E   + ++  L +     +   +   +A
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKKSEAIPLTQEIA 91

Query: 69  EELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIP 128
           +  G         E    ++P L     + +   +     +L  I        +      
Sbjct: 92  KAFGQMAKEKP--ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMASIVRD 148

Query: 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
            +  L++        +   +  +   ++   +   L  I   L  D   +VR SA   L 
Sbjct: 149 FMSMLSSKNREDKLTALNFIEAMG-ENSFKYVNPFLPRIINLL-HDGDEIVRASAVEALV 206

Query: 189 KFAAT 193
             A  
Sbjct: 207 HLATL 211

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 28/218 (12%), Positives = 50/218 (22%), Gaps = 49/218 (22%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTI------------------------ARAL 40
                    L   L + +   R++S R L                           A  L
Sbjct: 19  QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFIL 78

Query: 41  GE----ERTPKELIPFL--SANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL 94
           G+    ++    +   L   A ND    V     E             ++  ++   +  
Sbjct: 79  GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 136

Query: 95  CTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTAR--VSACGLFHIA 152
              + T +R     ++  I  +            L+  L             A  +    
Sbjct: 137 AFDKSTNVRRATAFAISVINDK-------ATIPLLINLLKDPNGDVRNWAAFAININKYD 189

Query: 153 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190
                D           ++ QD    VR  A   L   
Sbjct: 190 NSDIRDCF--------VEMLQDKNEEVRIEAIIGLSYR 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.95
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.75
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.66
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.62
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.61
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.61
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.59
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.57
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.55
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.55
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.54
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.52
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.52
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.52
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.51
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.49
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.48
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.47
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.45
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.45
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.42
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.41
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.41
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.39
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.37
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.37
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.34
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.34
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.33
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.31
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.28
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.25
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.25
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.25
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.21
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.21
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.16
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.11
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.11
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.04
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.03
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.99
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.97
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	98.92
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.91
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	98.9
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.82
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.81
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.8
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.8
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.79
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.78
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.78
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.73
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.69
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.68
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.68
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.67
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.63
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.56
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.5
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.49
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.43
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.42
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.39
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.37
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.34
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.33
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.31
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.29
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.28
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.21
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.2
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.18
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.09
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	98.02
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.0
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.98
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.97
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.96
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.94
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.89
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.71
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.67
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.53
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.52
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.52
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.49
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.45
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.39
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.37
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.33
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.95
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.93
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	96.88
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.72
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.72
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.64
3grl_A	651	General vesicular transport factor P115; vesicle t	96.36
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.26
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.22
3grl_A	651	General vesicular transport factor P115; vesicle t	96.2
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.13
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.06
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	95.95
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	95.69
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	95.67
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	95.48
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.12
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	95.02
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	94.49
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	94.38
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.37
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.98
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	92.38
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	87.62
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	87.56
1t06_A	235	Hypothetical protein; structural genomics, PSI, pr	86.33
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	85.03
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	81.81
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.11

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.95  E-value=1.1e-26  Score=205.56  Aligned_cols=207  Identities=59%  Similarity=0.947  Sum_probs=195.3

Q ss_pred             CCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCcccc
Q 039154            4 VDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus         4 ~~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      -|+++.|+..+++.|+|+|+.+|..|++.+..++..+|++.+.++++|++.++.|++++||..+++.|+.+.+.+|+...
T Consensus         5 ~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~   84 (588)
T 1b3u_A            5 GDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEY   84 (588)
T ss_dssp             TTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred             cCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHH
Confidence            37899999999999999999999999999999999999999999999999985588999999999999999999998888


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE  163 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~  163 (211)
                      ...++|.+..+..|++..||..|++++.++++.++++...+.++|.+.+++++++|.+|..++..++.+++.++...++.
T Consensus        85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~  164 (588)
T 1b3u_A           85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE  164 (588)
T ss_dssp             GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999878889


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL  210 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L  210 (211)
                      ++|.+.++++|+++.||.+++..++.++..+|++.....++|.+..+
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  211 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL  211 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887778899988654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.90  E-value=1.4e-23  Score=185.47  Aligned_cols=191  Identities=20%  Similarity=0.256  Sum_probs=163.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccc
Q 039154           19 KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV   97 (211)
Q Consensus        19 ~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d   97 (211)
                      +++++..|..++..++.++..+|. ..+..++|.+.+ +.|++++||.++++.|+.+++.+|++.....++|.+..+++|
T Consensus       136 ~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d  214 (588)
T 1b3u_A          136 GGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD  214 (588)
T ss_dssp             TCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTC
T ss_pred             cCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcC
Confidence            444455555555555555444442 345677787778 789999999999999999999988877778899999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCC
Q 039154           98 EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDM  176 (211)
Q Consensus        98 ~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~  176 (211)
                      +++.||..|+.++..+++.++.+...+.++|.+.++.+|++|+||.+++..++.++...|.+ +...++|.|.++++|++
T Consensus       215 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  294 (588)
T 1b3u_A          215 EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE  294 (588)
T ss_dssp             SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSS
T ss_pred             CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCc
Confidence            99999999999999999999999888999999999999999999999999999999988877 56789999999999999


Q ss_pred             HHHHHHHHHhhHHHHhhhCch----hhHHHHHHHHHhh
Q 039154          177 PMVRRSAASNLRKFAATVEPA----HLKTDIMSIFEDL  210 (211)
Q Consensus       177 ~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~~~L  210 (211)
                      +.||.+++.+++.++..++++    .....++|.+..+
T Consensus       295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~  332 (588)
T 1b3u_A          295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL  332 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999987    4567788877543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.75  E-value=6.9e-17  Score=128.86  Aligned_cols=183  Identities=13%  Similarity=0.081  Sum_probs=155.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCcc--ccccc
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGGV--EHAHV   86 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~~--~~~~~   86 (211)
                      .+.+.+.|.+...|..++..|..+....+.  ...-..+++.+.. +. |.+..||..++..++.++..+|..  .+...
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~   98 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA   98 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            477788999999999999999999876332  1223577888888 74 999999999999999999987753  34456


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-----HHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-----ILK  161 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-----~~~  161 (211)
                      ++|.+...+.|.+..||.+|..++..+++..+.    +.++|.+....++.+|.+|..++..++.+....++     .+.
T Consensus        99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l  174 (242)
T 2qk2_A           99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL  174 (242)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence            889999999999999999999999999998764    45778888888899999999999999997665542     366


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL  199 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~  199 (211)
                      ..++|.+..+++|+.+.||.+|...++.++..+|.+.+
T Consensus       175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~  212 (242)
T 2qk2_A          175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV  212 (242)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence            79999999999999999999999999999999997644

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.66  E-value=3.1e-15  Score=128.24  Aligned_cols=186  Identities=18%  Similarity=0.132  Sum_probs=149.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhh-chhhhhhh-cCCChHHHHHHHHHHHhcccccc--------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPK-ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYV--------   78 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~-~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~i--------   78 (211)
                      +..+.+.+.+++..+|..+++.+..++...+..  ..-. .++|++.. +.|.+++||..+.+.|..+++..        
T Consensus       219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  298 (462)
T 1ibr_B          219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  298 (462)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            444556678899999999999999999876542  1223 77888777 88999999999999888887642        


Q ss_pred             ----------Cc-cc----cccccchHHhhhcc-------chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154           79 ----------GG-VE----HAHVLLPPLETLCT-------VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG  136 (211)
Q Consensus        79 ----------g~-~~----~~~~llp~l~~l~~-------d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d  136 (211)
                                .. ..    ....++|.+...+.       |+++.+|..|..+|..++..++ +.+...++|.+....+|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~  377 (462)
T 1ibr_B          299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN  377 (462)
T ss_dssp             CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTC
T ss_pred             cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcC
Confidence                      00 00    12456666654443       3357899999999999999999 56678899999999999


Q ss_pred             CCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          137 EWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       137 ~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      +.|++|.+++..++.++...+.+    ....++|.++.+++|+.+.||.+|+..++.++..++++
T Consensus       378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~  442 (462)
T 1ibr_B          378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  442 (462)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred             CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999876632    34679999999999999999999999999999999874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.62  E-value=3.7e-14  Score=110.26  Aligned_cols=153  Identities=21%  Similarity=0.203  Sum_probs=125.6

Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc
Q 039154            8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (211)
Q Consensus         8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~   86 (211)
                      ..-+..+++.|+++++.+|..|+..|..+    |.    ...+|.+.+ +.|+++.||..++..|+.+..        ..
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKI----GD----ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            34488999999999999999999999875    33    355777777 889999999999999998642        24


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  166 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~  166 (211)
                      .+|.+..+++|+++.||..|+.+|..++.        ...+|.+.++.+|+++.||..++..++.+...       ..++
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~  146 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-------RAVE  146 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------GGHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-------HHHH
Confidence            56778888899999999999999998864        24567788888999999999999999888432       4577


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          167 IYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       167 ~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .+..+++|+++.||.+++..|+.+.
T Consensus       147 ~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          147 PLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            7888889999999999999998774

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.61  E-value=5.8e-14  Score=108.32  Aligned_cols=163  Identities=20%  Similarity=0.203  Sum_probs=130.9

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      ....+++.|+++|+.+|..|+..|..+    |.    ...+|.+.+ +.|+++.||..++..|+.+..    +    ..+
T Consensus        15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~----~~~   78 (201)
T 3ltj_A           15 KVEMYIKNLQDDSYYVRRAAAYALGKI----GD----ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E----RAV   78 (201)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGH
T ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHhc----CC----hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H----HHH
Confidence            378899999999999999999999865    33    245677777 889999999999999998642    2    356


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      |.+..+++|+++.||..|+.+|..+..        ...+|.+.++.+|+++.||..++..++.+..       ...++.+
T Consensus        79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L  143 (201)
T 3ltj_A           79 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPL  143 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GGGHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHH
Confidence            778888899999999999999998864        2466777788899999999999999998853       2467788


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      ..+++|+++.||.+++..|+.+    |.+.....|..++
T Consensus       144 ~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l  178 (201)
T 3ltj_A          144 IKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLA  178 (201)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHH
Confidence            8999999999999999999887    4344444444443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.61  E-value=8.3e-15  Score=135.76  Aligned_cols=196  Identities=18%  Similarity=0.175  Sum_probs=154.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc----ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG----VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~----~~~   83 (211)
                      +..+...+.++++.+|..+++.+..++...+..  ..-..+++++.+ +.|++++||..+++.|..+++.-..    ...
T Consensus       217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~  296 (852)
T 4fdd_A          217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH  296 (852)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            556677788999999999999999998765421  112357788888 7899999999999999988763211    123


Q ss_pred             ccccchHHhhhc-----------cc-----------hhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchH
Q 039154           84 AHVLLPPLETLC-----------TV-----------EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTA  141 (211)
Q Consensus        84 ~~~llp~l~~l~-----------~d-----------~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~v  141 (211)
                      ...++|.+...+           .|           .++.||..|+.++..++..++ +.+...++|.+..+.+|+.|++
T Consensus       297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~  375 (852)
T 4fdd_A          297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVV  375 (852)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHH
Confidence            345667765554           34           345789999999999999987 4566789999999999999999


Q ss_pred             HHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch---hhHHHHHHHH
Q 039154          142 RVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA---HLKTDIMSIF  207 (211)
Q Consensus       142 R~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~---~~~~~llp~~  207 (211)
                      |.+++..++.++...+..   +...++|.+.++++|+.+.||.+++..++.++..++++   .....++|.+
T Consensus       376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L  447 (852)
T 4fdd_A          376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL  447 (852)
T ss_dssp             HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            999999999999988764   56889999999999999999999999999999987643   3344555544

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.6e-14  Score=114.91  Aligned_cols=187  Identities=10%  Similarity=0.113  Sum_probs=151.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-HHHHhCC----cchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccC-cc---
Q 039154           13 VLTDELKNDDIQLRLNSIRRLST-IARALGE----ERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVG-GV---   81 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~-ia~~lg~----~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig-~~---   81 (211)
                      .+-+.++|.+...|.+|+..|.. +......    ..--.+++..+.+ + .|.+..||..++..++.+++.++ +.   
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            56778899999999999999888 7532111    1111466777777 6 79999999999999999999887 32   


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH---HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                      .+...++|.+...++|....||.++..++..+++..++...   -+.+++.+....++++|.+|..++..+..++...+.
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            23355788888888999999999999999999999865322   235777777777888999999999999999887773


Q ss_pred             ---H---HH-HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154          159 ---I---LK-TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL  199 (211)
Q Consensus       159 ---~---~~-~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~  199 (211)
                         .   +. +.++|.+.+++.|+.+.||.+|...++.+...+|.+.+
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~  227 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF  227 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence               2   45 78999999999999999999999999999999998654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.57  E-value=7.1e-14  Score=108.62  Aligned_cols=157  Identities=20%  Similarity=0.166  Sum_probs=127.9

Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154            9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus         9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      ..+..+++.++++++.+|..++..|..+    |.    ...+|.+.+ +.|+++.||..++..|+.+..    +    ..
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~  113 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQI----GD----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E----RA  113 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GG
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhh----CC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HH
Confidence            3477889999999999999999999876    33    345777778 899999999999999998643    2    35


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  167 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~  167 (211)
                      +|.|..+++|+++.||..|+.+|..+..        ...+|.+.++.+|+++.||..++..++.+..       ....+.
T Consensus       114 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~  178 (211)
T 3ltm_A          114 VEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAA  178 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHH
Confidence            6788888999999999999999999864        2467788888899999999999999998843       367888


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      +..+++|+++.||.+|+..|..+....+.
T Consensus       179 L~~~l~d~~~~vr~~A~~aL~~~~~~~~~  207 (211)
T 3ltm_A          179 MEKLAETGTGFARKVAVNYLETHKSFNHH  207 (211)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence            88999999999999999999988776543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.55  E-value=4.2e-14  Score=131.03  Aligned_cols=184  Identities=17%  Similarity=0.132  Sum_probs=149.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHH------hCCcchhhchhhhhhh-c-----------CC-----------ChH
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARA------LGEERTPKELIPFLSA-N-----------ND-----------DDD   61 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~------lg~~~~~~~L~p~l~~-~-----------~D-----------~~~   61 (211)
                      +..+++.+++++..+|..|+.-+..++..      +.+  .-..++|.+.+ +           .|           +++
T Consensus       258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~  335 (852)
T 4fdd_A          258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW  335 (852)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence            45566778899999999999888877632      111  22366777765 4           33           233


Q ss_pred             HHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCc
Q 039154           62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWF  139 (211)
Q Consensus        62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~  139 (211)
                      .||++++..|+.++...| +.....++|.+..+++++++.+|++|+.+++.+++..+..  .....++|.+..+.+|+++
T Consensus       336 ~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~  414 (852)
T 4fdd_A          336 NLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA  414 (852)
T ss_dssp             CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred             hHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence            589999999999999876 5666788999999999999999999999999999877642  2346688999999999999


Q ss_pred             hHHHhHHhHHHhhccCCCh----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          140 TARVSACGLFHIAYPSAPD----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       140 ~vR~~~a~~l~~l~~~~~~----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      .||..++..++.++..++.    .+...+++.+++.++|+++.||.+|+..++.++...+++
T Consensus       415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            9999999999998876543    267789999999999999999999999999999988864

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.55  E-value=1e-13  Score=112.22  Aligned_cols=130  Identities=14%  Similarity=0.030  Sum_probs=87.4

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      .++.+++.|+++|+.+|..|+..|..+.    .    ...+|.+.+ +.|+++.||..++..|+.+..   .......++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRG----G----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccC----C----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHH
Confidence            4778889999999999999999988763    2    346777777 888899999999999988653   122233455


Q ss_pred             hHHh-hhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154           89 PPLE-TLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA  152 (211)
Q Consensus        89 p~l~-~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l  152 (211)
                      +.+. .+.+|+++.||..|+.+|..++...+.  ....++|.+..+.+|+++.||..++..++.+
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence            6665 356788888999999988888743211  1123444444445555555555555555443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.54  E-value=1.6e-13  Score=105.89  Aligned_cols=152  Identities=21%  Similarity=0.190  Sum_probs=127.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      .+..+++.++++++.+|..++..|..+    |.    ...+|.+.+ +.|+++.||..++..|+.+..    +    ..+
T Consensus        46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~----~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~----~~~  109 (201)
T 3ltj_A           46 AVEPLIKALKDEDAWVRRAAADALGQI----GD----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E----RAV  109 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhh----CC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHH
Confidence            477888999999999999999999875    33    245777778 889999999999999998643    2    356


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      +.+..+++|+++.||..|+.+|..+..        ...+|.+.++.+|+++.||..++..++.+.    .   ....+.+
T Consensus       110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~---~~~~~~L  174 (201)
T 3ltj_A          110 EPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIG----G---ERVRAAM  174 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S---HHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c---hhHHHHH
Confidence            778888899999999999999999864        356788888999999999999999999883    2   3678888


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ..+++|+++.||.+|+..|+.+..
T Consensus       175 ~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          175 EKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHh
Confidence            889999999999999999987654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.52  E-value=1.6e-13  Score=111.16  Aligned_cols=164  Identities=15%  Similarity=0.057  Sum_probs=126.5

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      .+..+++.++|+++.+|..|+..|+.+.   +.......++|.+.+  ..|+++.||..++..|+.+....  ......+
T Consensus        55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~---~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~--~~~~~~~  129 (280)
T 1oyz_A           55 AVRLAIEFCSDKNYIRRDIGAFILGQIK---ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN--PIYSPKI  129 (280)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSC---CCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhc---cccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CcccHHH
Confidence            3677888899999999999998887642   123344557777764  67889999999999999976421  1223457


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI  167 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~  167 (211)
                      +|.+..+++|+++.||..|+.+|..++.        ...+|.+..+.+|+.+.||..++..++.+...     ....++.
T Consensus       130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~  196 (280)
T 1oyz_A          130 VEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDC  196 (280)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHH
Confidence            7888888999999999999999987764        23677788888999999999999999887422     1357788


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      +..+++|+++.||..++..|+.+.
T Consensus       197 L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          197 FVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhC
Confidence            889999999999999999998765

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.52  E-value=5.7e-13  Score=122.54  Aligned_cols=197  Identities=13%  Similarity=0.116  Sum_probs=155.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG------   80 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~------   80 (211)
                      +..+.+.+.+++..+|..+++.+..++...+..-   ..+.+++++.. +.|.++.||..+.+.|..+++....      
T Consensus       226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~  305 (861)
T 2bpt_A          226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA  305 (861)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4455666788999999999999999998876432   11267777777 8899999999999999888775310      


Q ss_pred             -------------cccccccchHHhhhccc-------hhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCch
Q 039154           81 -------------VEHAHVLLPPLETLCTV-------EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFT  140 (211)
Q Consensus        81 -------------~~~~~~llp~l~~l~~d-------~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~  140 (211)
                                   ......++|.+...+.+       +++.+|..|...+..++..++ +.....++|.+.+..+++.|+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~  384 (861)
T 2bpt_A          306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWR  384 (861)
T ss_dssp             HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHH
T ss_pred             hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChh
Confidence                         11224567776555542       357899999999999999988 455667889999999999999


Q ss_pred             HHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc----hhhHHHHHHHHH
Q 039154          141 ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP----AHLKTDIMSIFE  208 (211)
Q Consensus       141 vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~----~~~~~~llp~~~  208 (211)
                      +|.+++..++.++...+.+    +...++|.+.+.++|+.+.||.+++..++.++..+++    ......++|.+.
T Consensus       385 ~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~  460 (861)
T 2bpt_A          385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL  460 (861)
T ss_dssp             HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence            9999999999999888733    4567899999999999999999999999999999875    335566777553

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.52  E-value=1.9e-13  Score=131.05  Aligned_cols=198  Identities=13%  Similarity=0.163  Sum_probs=157.1

Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---Ccchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154            8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALG---EERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus         8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg---~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      ..-+..+++.+.|.|+..|..|...|....+.-.   .+...+.++|.+.+ +.|++++||.+++..|+.+++.++. ..
T Consensus         5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~   83 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ   83 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence            3458899999999999999999888765432100   11345578888888 8899999999999999999987765 45


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--------HHHHhhHHHHHHhhcC-CCchHHHhHHhHHHhhcc
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--------DLVDWFIPLVKRLAAG-EWFTARVSACGLFHIAYP  154 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--------~~~~~l~p~i~~l~~d-~~~~vR~~~a~~l~~l~~  154 (211)
                      ...+++.+...+.|++..||.+|..++..++..++++        ...+.++|.+.+..+| ++|.+|..+...+..++.
T Consensus        84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~  163 (1230)
T 1u6g_C           84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  163 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            6678888888888998999999999999999999876        2467899999888884 889999999999999986


Q ss_pred             CCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          155 SAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       155 ~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      ..|..   +...+++.+...++|+++.||+.++..++.++...+.+.+ ..++|.+
T Consensus       164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~-~~~l~~l  218 (1230)
T 1u6g_C          164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIEHL  218 (1230)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHHHH
T ss_pred             HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHH
Confidence            65553   5688999999999999999999999999999998876542 3344433

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.51  E-value=6.4e-13  Score=122.45  Aligned_cols=196  Identities=17%  Similarity=0.132  Sum_probs=152.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-------   79 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-------   79 (211)
                      +..+.+.+.+++..+|..+++.+..++...+..-   ....++|++.+ ..|++++||..+.+.|..+++...       
T Consensus       219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~  298 (876)
T 1qgr_A          219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  298 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhc
Confidence            4555666788899999999999999998766431   22367788877 788999999999998888776420       


Q ss_pred             -----------c-cc----cccccchHHhhhcc-------chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154           80 -----------G-VE----HAHVLLPPLETLCT-------VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG  136 (211)
Q Consensus        80 -----------~-~~----~~~~llp~l~~l~~-------d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d  136 (211)
                                 . ..    ....++|.+...+.       |+++.+|.+|...+..+++.++. .+...++|.+....+|
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~  377 (876)
T 1qgr_A          299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKN  377 (876)
T ss_dssp             HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTC
T ss_pred             cccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccC
Confidence                       0 00    11345665544443       44689999999999999999884 4566888999999999


Q ss_pred             CCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hhHHHHHHHH
Q 039154          137 EWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HLKTDIMSIF  207 (211)
Q Consensus       137 ~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~  207 (211)
                      ++|++|.+++..++.++...+++    +...++|.++.+++|+.+.||.+|+..++.++..+++.    .....++|.+
T Consensus       378 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l  456 (876)
T 1qgr_A          378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  456 (876)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHH
Confidence            99999999999999999988843    45778999999999999999999999999999998753    3344555544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.49  E-value=1.2e-13  Score=132.43  Aligned_cols=197  Identities=16%  Similarity=0.170  Sum_probs=155.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG   80 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~   80 (211)
                      +..+++.+.++++.+|..++..+..++..+|++.        ...+++|.+.+ +.| +++.+|..+...|..+++..|.
T Consensus        88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~  167 (1230)
T 1u6g_C           88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  167 (1230)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence            5667788889999999999999999999999862        56789999998 774 7899999999999998875553


Q ss_pred             c--ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           81 V--EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        81 ~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                      .  .....+++.+...+.|++..||..|+.++..++...+.+.+...+-.++..+.++.++.+|..++..++.++...|.
T Consensus       168 ~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~  247 (1230)
T 1u6g_C          168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH  247 (1230)
T ss_dssp             SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH
Confidence            1  13456778888888899999999999999999998887654433334444555555678999999999999888876


Q ss_pred             H---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh--hHHHHHHHH
Q 039154          159 I---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH--LKTDIMSIF  207 (211)
Q Consensus       159 ~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~--~~~~llp~~  207 (211)
                      .   +...++|.+.+.++|+++.||..++..++.++..++.+.  ....++|.+
T Consensus       248 ~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~l  301 (1230)
T 1u6g_C          248 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC  301 (1230)
T ss_dssp             GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHH
Confidence            5   347899999999999999999999999999999988753  445666665

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.48  E-value=1.1e-12  Score=112.26  Aligned_cols=198  Identities=9%  Similarity=0.084  Sum_probs=149.5

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhC----Ccchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--
Q 039154           11 IAVLTDELKND--DIQLRLNSIRRLSTIARALG----EERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--   81 (211)
Q Consensus        11 l~~l~~~l~s~--~~~~R~~a~~~l~~ia~~lg----~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--   81 (211)
                      +..+...++++  ++.+|..|++.+..+...++    .......+++.+.+ ..+++++||..+++.|..++...+..  
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~  253 (462)
T 1ibr_B          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (462)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677788888  79999999999887654332    11123456888888 88899999999999999988755431  


Q ss_pred             cccc-ccchHHhhhccchhhHHHHHHHHHHHHHHhhc--------------------ChhHH---HHhhHHHHHHhhc--
Q 039154           82 EHAH-VLLPPLETLCTVEETCMRDKAVESLCRIGSQM--------------------RESDL---VDWFIPLVKRLAA--  135 (211)
Q Consensus        82 ~~~~-~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l--------------------~~~~~---~~~l~p~i~~l~~--  135 (211)
                      .+.. .+++.+...++|.++.||..|++.+..+++..                    ....+   ...++|.+.+...  
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~  333 (462)
T 1ibr_B          254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (462)
T ss_dssp             TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc
Confidence            2233 66777777778999999999999998888753                    01111   2556777755442  


Q ss_pred             -----CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh---hHHHHHHHH
Q 039154          136 -----GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH---LKTDIMSIF  207 (211)
Q Consensus       136 -----d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~---~~~~llp~~  207 (211)
                           |+.|.+|.+++..+..++..+|+.....++|.+...++|+.|.+|.+++..++.++...+++.   ....++|.+
T Consensus       334 d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l  413 (462)
T 1ibr_B          334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL  413 (462)
T ss_dssp             CSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence                 457999999999999999999966778899999999999999999999999999998665332   224566765


Q ss_pred             H
Q 039154          208 E  208 (211)
Q Consensus       208 ~  208 (211)
                      .
T Consensus       414 ~  414 (462)
T 1ibr_B          414 I  414 (462)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.47  E-value=1.2e-12  Score=120.33  Aligned_cols=183  Identities=16%  Similarity=0.109  Sum_probs=148.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC----------------Cc---chhhchhhhhhh-cC-------CChHHH
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALG----------------EE---RTPKELIPFLSA-NN-------DDDDEV   63 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg----------------~~---~~~~~L~p~l~~-~~-------D~~~~V   63 (211)
                      +..+...+++.+..+|..++.-+..++....                +.   ..-..++|.+.+ +.       |+++.|
T Consensus       268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~  347 (861)
T 2bpt_A          268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV  347 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcH
Confidence            3445667889999999999999988887642                11   112567777766 44       245689


Q ss_pred             HHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCch
Q 039154           64 LLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFT  140 (211)
Q Consensus        64 R~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~  140 (211)
                      |++++..|+.++..+| +.....++|.+...+++.++.+|++|+.+++.+++..+++.+.   ..++|.+.+..+|+++.
T Consensus       348 r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~  426 (861)
T 2bpt_A          348 SMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ  426 (861)
T ss_dssp             HHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            9999999999999887 4556778899999999999999999999999999887754443   45788888889999999


Q ss_pred             HHHhHHhHHHhhccCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          141 ARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       141 vR~~~a~~l~~l~~~~~~-----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      ||.+++..++.++..++.     ++...++|.+++.++|+ +.||.+++..+..+++.++
T Consensus       427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  485 (861)
T 2bpt_A          427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA  485 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence            999999999988776543     36788999999999998 9999999999999999887

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.45  E-value=2.1e-12  Score=102.57  Aligned_cols=186  Identities=17%  Similarity=0.129  Sum_probs=147.2

Q ss_pred             CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc
Q 039154            6 EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG   80 (211)
Q Consensus         6 ~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~   80 (211)
                      +.-.+...+.+.|+|+|+++|..|+..|..+... ..+    -.....+|.+.+ +.+++++||..++..|++++..-..
T Consensus         9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A            9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence            3445688999999999999999999999765544 221    133456788888 8888899999999999998862110


Q ss_pred             ---cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154           81 ---VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (211)
Q Consensus        81 ---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~  154 (211)
                         .-...-.+|.+..+++++++.||..|+.+|..++..-+..   ....-.+|.+.++.+++++.+|..++..+..++.
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence               1112336889999999999999999999999998765433   2344588999999999999999999999999987


Q ss_pred             CCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          155 SAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       155 ~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      .-...    .....+|.++++++++++.||..++..|++++.
T Consensus       168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  209 (252)
T 4db8_A          168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  209 (252)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence            54332    234578999999999999999999999999984

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.45  E-value=2.6e-12  Score=118.35  Aligned_cols=183  Identities=18%  Similarity=0.118  Sum_probs=148.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC------------------C--cc---hhhchhhhhhh-cC-------CC
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALG------------------E--ER---TPKELIPFLSA-NN-------DD   59 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg------------------~--~~---~~~~L~p~l~~-~~-------D~   59 (211)
                      +..+...+++++..+|..++.-+..++....                  +  ..   .-+.++|.+.+ +.       |+
T Consensus       261 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~  340 (876)
T 1qgr_A          261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD  340 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccc
Confidence            4556667788999999999988888876430                  0  11   11456776665 42       45


Q ss_pred             hHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH---HHhhHHHHHHhhcC
Q 039154           60 DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---VDWFIPLVKRLAAG  136 (211)
Q Consensus        60 ~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---~~~l~p~i~~l~~d  136 (211)
                      ++.+|++++..++.++...| +.....++|.+...++|.++.+|.+|+.+++.+++..+++.+   ...++|.+....+|
T Consensus       341 ~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d  419 (876)
T 1qgr_A          341 DWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD  419 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            67899999999999999887 455667888888999999999999999999999998885533   35588988888999


Q ss_pred             CCchHHHhHHhHHHhhccCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          137 EWFTARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       137 ~~~~vR~~~a~~l~~l~~~~~~-----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +.+.||..++..++.++...+.     ++...+++.+++.++|+ +.||..++..+..++..++
T Consensus       420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999887654     36788999999999996 9999999999999998875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.42  E-value=6.4e-12  Score=99.15  Aligned_cols=182  Identities=16%  Similarity=0.099  Sum_probs=145.2

Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-
Q 039154            9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-   83 (211)
Q Consensus         9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-   83 (211)
                      ..+..+++.|+++++.+|..|+..|..++..-+..   -.....+|.+.+ +.+++++||..++..|++++..  .+.. 
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--ChHHH
Confidence            35788999999999999999999999887432211   123356788888 8888999999999999998863  1111 


Q ss_pred             ----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           84 ----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        84 ----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                          ....+|.+..+++++++.+|..|+..|..++..-+.   .....-.+|.+.++..++.+.+|..++..+..++..-
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence                234688899999999999999999999999964322   1233457899999999999999999999999998764


Q ss_pred             ChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          157 PDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       157 ~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ...    .....++.+.++++++++.||..++..|.+++.
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  199 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  199 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            332    234588999999999999999999999999986

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.41  E-value=7.2e-12  Score=99.61  Aligned_cols=167  Identities=10%  Similarity=0.034  Sum_probs=134.7

Q ss_pred             hCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhcc-chhhHHHHHHHHHHHHHHh
Q 039154           40 LGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCT-VEETCMRDKAVESLCRIGS  115 (211)
Q Consensus        40 lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~  115 (211)
                      +.+.+.-..+-|-+.+ ..|.++.+|++++..|..+++..+.  ......+++.+..++. |.+..||..|+.++..++.
T Consensus         7 ~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~   86 (242)
T 2qk2_A            7 LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK   86 (242)
T ss_dssp             TSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            4455555666666777 8899999999999999998874222  1223567888888884 9999999999999999999


Q ss_pred             hcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          116 QMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       116 ~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .+++.  .....++|.+.....|+...||.+++..+..++...+-   +.++|.+...++|..|.||..++..++.++..
T Consensus        87 ~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~  163 (242)
T 2qk2_A           87 GLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---EAQQESIVESLSNKNPSVKSETALFIARALTR  163 (242)
T ss_dssp             HHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            98775  34466899999999999999999999999999887763   57889999999999999999999999999888


Q ss_pred             hCchh----hHHHHHHHHHh
Q 039154          194 VEPAH----LKTDIMSIFED  209 (211)
Q Consensus       194 ~~~~~----~~~~llp~~~~  209 (211)
                      ++++.    ....++|.+..
T Consensus       164 ~~~~~~~~~~l~~l~p~l~~  183 (242)
T 2qk2_A          164 TQPTALNKKLLKLLTTSLVK  183 (242)
T ss_dssp             CCGGGCCHHHHHHHHHHHHH
T ss_pred             cCCCCccHHHHHHHHHHHHH
Confidence            87652    23456666543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.41  E-value=4e-12  Score=98.31  Aligned_cols=181  Identities=17%  Similarity=0.132  Sum_probs=142.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---   80 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---   80 (211)
                      +...+...|+|+|+.+|..|+..|..++.  +.+.     .....+|.+.+ +.+++++||..++..|++++..-..   
T Consensus        13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           13 ELPQMVQQLNSPDQQELQSALRKLSQIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            45677788899999999999999998863  2222     22356788888 8899999999999999998742110   


Q ss_pred             cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                      .-...-.+|.+..++++++..||..|+.+|..++..-+..   ....-.+|.+.++.++++..+|..++..+..++..-.
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            1112347899999999999999999999999998743221   2234578999999999999999999999999987533


Q ss_pred             hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ..    .....++.+.++++++++.||+.|+..|..++.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            22    234578999999999999999999999988764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.39  E-value=9.6e-12  Score=106.30  Aligned_cols=199  Identities=13%  Similarity=0.042  Sum_probs=153.5

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cc
Q 039154           11 IAVLTDELKN-DDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VE   82 (211)
Q Consensus        11 l~~l~~~l~s-~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~   82 (211)
                      +..++..+++ .+..+|..++..+..++..-++.   .....++|.+.+ +.++++.||..++..|.+++..-..   ..
T Consensus       151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  230 (450)
T 2jdq_A          151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV  230 (450)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            6677788885 68999999999999998544222   233678898888 8889999999999999998863211   11


Q ss_pred             cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      ....++|.+..++.++++.||..|+.+|..++...+..   .....++|.+.++.+++++.+|..++..++.++......
T Consensus       231 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~  310 (450)
T 2jdq_A          231 IDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ  310 (450)
T ss_dssp             HHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            12357888989999999999999999999998764332   123358899999999999999999999999998754332


Q ss_pred             ----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhH----HHHHHHHHh
Q 039154          160 ----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLK----TDIMSIFED  209 (211)
Q Consensus       160 ----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~----~~llp~~~~  209 (211)
                          ....++|.++.+++|+++.||+.++..|++++...+++...    ..++|.+.+
T Consensus       311 ~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~  368 (450)
T 2jdq_A          311 IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD  368 (450)
T ss_dssp             HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence                22478899999999999999999999999998865554322    335555544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.37  E-value=1.7e-11  Score=104.73  Aligned_cols=183  Identities=11%  Similarity=0.010  Sum_probs=145.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc---c
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG---V   81 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~---~   81 (211)
                      -+..+++.++++++.+|..|+..|..++..-...   ......+|.+.+ +.+ .++.||..++..|++++..-++   .
T Consensus       108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  187 (450)
T 2jdq_A          108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF  187 (450)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence            4778889999999999999999999987532110   122456788888 774 7899999999999999864321   2


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                      .....++|.+..++++++..+|..++.+|..++...+.   ......++|.+.++..++.+.+|..++..++.++...+.
T Consensus       188 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  267 (450)
T 2jdq_A          188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI  267 (450)
T ss_dssp             GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH
Confidence            23366889999999999999999999999999875422   122345788888899999999999999999999876543


Q ss_pred             H----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          159 I----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       159 ~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      .    ....+++.+.++++++++.||+.++..|++++.
T Consensus       268 ~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~  305 (450)
T 2jdq_A          268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA  305 (450)
T ss_dssp             HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            3    123588999999999999999999999999985

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.37  E-value=1.1e-11  Score=97.68  Aligned_cols=186  Identities=15%  Similarity=0.085  Sum_probs=146.4

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---   80 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---   80 (211)
                      -+..+++.|++++..+|..++..|..++..  .+.     .....+|.+.+ +.+++++||..++..|++++..-..   
T Consensus        45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  122 (252)
T 4hxt_A           45 GVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK  122 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            377888999999999999999999888632  122     22356788888 8899999999999999999852110   


Q ss_pred             cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                      .-.....+|.+..+++++++.+|..|+.+|..++..-+.   .....-.+|.+.++..++...+|..++..+..++..-.
T Consensus       123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  202 (252)
T 4hxt_A          123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT  202 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            111234688899999999999999999999999875332   12334588999999999999999999999999987422


Q ss_pred             hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      ..    .....++.+.++++++++.||+.|+..|.++...-+.+
T Consensus       203 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence            21    23457899999999999999999999999999876543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.34  E-value=4.2e-11  Score=107.12  Aligned_cols=176  Identities=16%  Similarity=0.178  Sum_probs=144.5

Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154            9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus         9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      ..++.+.++|+|.+...|..+++.+-- ...+|.+.  ..+.+.+.+ +++++.++|+.+.-.+..+++.  .++....+
T Consensus        13 ~e~~~i~~~L~~~~~~~k~~~~~kli~-~~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~   87 (591)
T 2vgl_B           13 GEIFELKAELNNEKKEKRKEAVKKVIA-AMTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMA   87 (591)
T ss_dssp             SHHHHHHHHTTSSCHHHHHHHHHHHHH-HHHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTT
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHHHH-HHHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHH
Confidence            358999999999999999999888853 46789754  567777778 8899999999998888887662  23333445


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-HHHHHH
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-KTELRS  166 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-~~~l~~  166 (211)
                      .+.+.+-++|+++.||..|+.+++.++    ..++...++|.+.++.+|+++.||+.++..+..++...+... ...+++
T Consensus        88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~  163 (591)
T 2vgl_B           88 VNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLD  163 (591)
T ss_dssp             HHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHH
Confidence            677888889999999999988887765    445667888999999999999999999999999988544333 247999


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          167 IYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       167 ~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .+.++++|+++.||.+|+..|++++..
T Consensus       164 ~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          164 SLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence            999999999999999999999998775

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.34  E-value=7.5e-12  Score=99.30  Aligned_cols=181  Identities=16%  Similarity=0.115  Sum_probs=141.9

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcch-----hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERT-----PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--   81 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~-----~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--   81 (211)
                      -+..+++.|+++++.+|..|+..|..++.  +.+..     ....+|.+.+ +.+++++||..++..|++++..-...  
T Consensus        55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  132 (252)
T 4db8_A           55 ALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ  132 (252)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence            36778899999999999999999998863  22222     2336788888 88899999999999999987632211  


Q ss_pred             -ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           82 -EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        82 -~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                       -.....+|.+..+++++++.||..|+.+|..++..-+..   ....-.+|.+.++..++...+|..++..+..++..-.
T Consensus       133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  212 (252)
T 4db8_A          133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  212 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence             122347899999999999999999999999998654221   2335578999999999999999999999999985433


Q ss_pred             hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ..    .....++.+.+++++.++.||+.|+..|.+++.
T Consensus       213 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          213 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            22    234588999999999999999999999987754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.33  E-value=2.2e-11  Score=107.03  Aligned_cols=186  Identities=12%  Similarity=0.064  Sum_probs=147.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~   83 (211)
                      +..++..+++.+..+|..++..|..++..-++.   .....++|.+.+ +.+++++||..++..|++++..-..   ...
T Consensus       217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~  296 (530)
T 1wa5_B          217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI  296 (530)
T ss_dssp             HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            667788888899999999999999998543221   234577888888 8888999999999999998863111   111


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-  159 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-  159 (211)
                      ...++|.+..++.+.++.||..|+.+|..++..-+.   ..+..-++|.+..+..++.|.+|..++..++.++...... 
T Consensus       297 ~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  376 (530)
T 1wa5_B          297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI  376 (530)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            236789999999999999999999999999864332   1233468899999999999999999999999998753332 


Q ss_pred             ---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       160 ---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                         ....++|.++.++++.++.||+.|+..|++++...++
T Consensus       377 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~  416 (530)
T 1wa5_B          377 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ  416 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence               1245788999999999999999999999999987554

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.31  E-value=3.1e-11  Score=106.15  Aligned_cols=183  Identities=12%  Similarity=0.042  Sum_probs=145.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCc---c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGG---V   81 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~---~   81 (211)
                      +..+++.|+|+++.+|..|+..|..++..-+..    .....++|.+.+ +.++ ++.||..++..|++++..-..   .
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            788999999999999999999998875432222    133568899999 7776 899999999999998862110   1


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC--
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA--  156 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~--  156 (211)
                      -.....+|.|..++++.+..||+.|+.+|..++..-+.   .....-++|.+.++..+....+|..++..+..++..-  
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence            11245689999999999999999999999999975322   2234467888999999999999999999999998654  


Q ss_pred             --ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          157 --PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       157 --~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                        .......++|.+..++.|+++.||..++..|..++..
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  287 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG  287 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence              2224567899999999999999999999999999864

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.28  E-value=4e-11  Score=94.34  Aligned_cols=146  Identities=12%  Similarity=0.091  Sum_probs=120.7

Q ss_pred             hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhh-hccchhhHHHHHHHHHHHHHHhhcChhHHH
Q 039154           46 PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLET-LCTVEETCMRDKAVESLCRIGSQMRESDLV  123 (211)
Q Consensus        46 ~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~  123 (211)
                      .+++++++.. .+++.++||..++..|+.+ .      ....+++.+.. +..|+.+.||+.+...+.+++...+++.  
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            6788899999 8899999999999988876 3      23578999987 8899999999999999999998666653  


Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHH
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTD  202 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~  202 (211)
                        .++.+..+++|++..||..++......+..... ...+.++|++..|..|++.-||++++..|.++++. .|+++...
T Consensus       140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~-~Pd~V~~~  216 (240)
T 3l9t_A          140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK-FPDLVKIE  216 (240)
T ss_dssp             --THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             --HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh-CHHHHHHH
Confidence              678899999999999999999887544432111 14578999999999999999999999999999885 66666554


Q ss_pred             H
Q 039154          203 I  203 (211)
Q Consensus       203 l  203 (211)
                      +
T Consensus       217 ~  217 (240)
T 3l9t_A          217 L  217 (240)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.25  E-value=6.1e-11  Score=104.05  Aligned_cols=181  Identities=13%  Similarity=0.104  Sum_probs=142.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhh-cCCCh-HHHHHHHHHHHhccccccCcccc-
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSA-NNDDD-DEVLLAMAEELGVFIPYVGGVEH-   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~-~~D~~-~~VR~~~a~~L~~l~~~ig~~~~-   83 (211)
                      +..+++.|+|+|+..|..|+..|..++..-+.+.    ....++|.+.+ +.+++ +.||..++..|++++.  +.++. 
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~~~~~  153 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS--GTSENT  153 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHHHH
Confidence            8889999999999999999999988865433121    34567898888 77765 9999999999999886  22221 


Q ss_pred             ----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhh-cCCCchHHHhHHhHHHhhccC
Q 039154           84 ----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLA-AGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        84 ----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~-~d~~~~vR~~~a~~l~~l~~~  155 (211)
                          ..-.+|.|..++.+++..||..|+.+|..++..-+.   .....-.+|.+.++. ++..+.+|..++..+..++..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence                224688899999999999999999999999865322   122234566666666 778899999999999999876


Q ss_pred             CChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          156 APDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .+..   .....+|.+..+++++++.||..++..|..++..
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            4222   4567899999999999999999999999998853

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.25  E-value=8.2e-11  Score=105.19  Aligned_cols=177  Identities=16%  Similarity=0.105  Sum_probs=109.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-cccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-HVLL   88 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-~~ll   88 (211)
                      ++.+.+.|+|+|+.+|..|++.++.+    +.......+.|.+.+ +.|.++.||+.|+..+..+.+ .+++... ..++
T Consensus        88 ~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~  162 (591)
T 2vgl_B           88 VNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQMVEDQGFL  162 (591)
T ss_dssp             HHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhhcccccHH
Confidence            45666667777777777776665443    344444566666666 667777777777777777666 2222111 1356


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l  164 (211)
                      |.+..+++|+++.||..|+.+|.++++.-+..    .....+-.++..+...+.| .+..+...+..+++. +.+....+
T Consensus       163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~-~q~~il~~l~~l~~~-~~~~~~~~  240 (591)
T 2vgl_B          163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEW-GQIFILDCLSNYNPK-DDREAQSI  240 (591)
T ss_dssp             HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHTSCCC-SHHHHHHH
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCch-HHHHHHHHHHHhCCC-ChHHHHHH
Confidence            67777777777777777777777776654321    1112222233333333334 444555555544432 22245678


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          165 RSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      ++.+..++++.++.||..|+..+..+...+
T Consensus       241 l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~  270 (591)
T 2vgl_B          241 CERVTPRLSHANSAVVLSAVKVLMKFLELL  270 (591)
T ss_dssp             HHHHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence            899999999999999999999999887655

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.25  E-value=6.4e-12  Score=100.49  Aligned_cols=132  Identities=18%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhc--cccccCccc------
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGV--FIPYVGGVE------   82 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~--l~~~ig~~~------   82 (211)
                      ..+...+++++..+|..++..+       +.        +.+.. ++|++++||.+++.+++.  +......++      
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~  165 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKL  165 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHH
Confidence            3455667777788887776643       11        12333 567777777777664321  000000000      


Q ss_pred             -cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH
Q 039154           83 -HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (211)
Q Consensus        83 -~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~  161 (211)
                       ....--+.+..+++|+++.||..++..+       +        .+.+..+.+|+.|.||..++..++           
T Consensus       166 aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~d~~VR~~aa~~l~-----------  219 (244)
T 1lrv_A          166 VAKRLPEESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDPDWTVRLAAVEHAS-----------  219 (244)
T ss_dssp             HHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCSSHHHHHHHHHHSC-----------
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHcCC-----------
Confidence             0000012334445555555555555432       1        133555566666666666666543           


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLR  188 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~  188 (211)
                         .+.+..| +|++|.||.+++.+|+
T Consensus       220 ---~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          220 ---LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             ---HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             ---HHHHHHc-cCCCHHHHHHHHHHhC
Confidence               1334445 6666666666666653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.7e-10  Score=92.55  Aligned_cols=158  Identities=13%  Similarity=0.106  Sum_probs=130.5

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhC-Ccc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-
Q 039154           11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALG-EER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-   83 (211)
Q Consensus        11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg-~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-   83 (211)
                      ++.++..+ ++.|+.+|..|++.++.+|..++ ++-   ....++|.+.+ +.|..+.||.++...+..+++.+++... 
T Consensus        62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~  141 (249)
T 2qk1_A           62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS  141 (249)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC
Confidence            77888889 79999999999999999999998 543   33557788888 8999999999999999999997754221 


Q ss_pred             --ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hH---HH-HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           84 --AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SD---LV-DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        84 --~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~---~~-~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                        .+.+++.+...++..++.||+.++..+..++...+.  +.   .. ..++|.+.++.+|....||..+.+.++.++..
T Consensus       142 ~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence              336777777888888999999999999999998874  32   34 78999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHh
Q 039154          156 APDILKTELRSIYTQL  171 (211)
Q Consensus       156 ~~~~~~~~l~~~~~~L  171 (211)
                      +|+.   .+.|.+-.|
T Consensus       222 vG~~---~~~p~l~~L  234 (249)
T 2qk1_A          222 FGMN---TFVKTLEHL  234 (249)
T ss_dssp             HCSG---GGHHHHHHS
T ss_pred             hCHH---HHHHHHHHH
Confidence            9976   344444443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.21  E-value=3.3e-10  Score=99.37  Aligned_cols=180  Identities=17%  Similarity=0.138  Sum_probs=142.1

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcch-----hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---
Q 039154           11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERT-----PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---   80 (211)
Q Consensus        11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~-----~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---   80 (211)
                      +..|++.|++++ +.+|..|+..|..++.  +....     ....+|.+.+ +.++++.||..++..|++++..-..   
T Consensus       119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~  196 (528)
T 4b8j_A          119 VPRFVQFLTREDFPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD  196 (528)
T ss_dssp             HHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence            677888898887 9999999999999875  32222     2346788888 8889999999999999999752110   


Q ss_pred             cccccccchHHhhhc-cchhhHHHHHHHHHHHHHHhhcC--hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           81 VEHAHVLLPPLETLC-TVEETCMRDKAVESLCRIGSQMR--ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        81 ~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~l~--~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                      .-.....+|.|..++ ++.+..+|..|+.+|..++..-+  .......++|.+.++..++.+.+|..++..+..++....
T Consensus       197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~  276 (528)
T 4b8j_A          197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN  276 (528)
T ss_dssp             HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            011223567777777 67789999999999999998742  234456789999999999999999999999999986644


Q ss_pred             hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ..    .....+|.++.+++++++.||..|+..|++++.
T Consensus       277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence            32    233578999999999999999999999999986

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.16  E-value=6.2e-12  Score=90.91  Aligned_cols=116  Identities=14%  Similarity=0.093  Sum_probs=87.4

Q ss_pred             hhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHH
Q 039154           50 IPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIP  128 (211)
Q Consensus        50 ~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p  128 (211)
                      +|.+.+ +.|+++.||..++..|+.+.    ...     .|.|..+++|+++.||..|+.+|..+..        ...+|
T Consensus        14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~   76 (131)
T 1te4_A           14 LVPRGSHMADENKWVRRDVSTALSRMG----DEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVE   76 (131)
T ss_dssp             -------CCSSCCCSSSSCCSSTTSCS----STT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhC----chH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence            455666 78888999999988888753    221     3777788888899999999999887763        23466


Q ss_pred             HHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154          129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       129 ~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~  189 (211)
                      .+.++.+|++|.||..++..++.+..       ...++.+..+++|+++.||.+|+..|++
T Consensus        77 ~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           77 PLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            66667789999999999999988752       3567888888999999999999988864

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.11  E-value=5.3e-11  Score=95.18  Aligned_cols=135  Identities=19%  Similarity=0.132  Sum_probs=83.6

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      |...+...++|+++.+|..+++.+       +.        +.+.. +.|+++.||.+++.+++.               
T Consensus        75 ~~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ll~D~d~~VR~~aA~~l~~---------------  124 (244)
T 1lrv_A           75 PVEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSALMFDEDREVRITVADRLPL---------------  124 (244)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGTTTCSCHHHHHHHHHHSCT---------------
T ss_pred             CHHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHHHHcCCCHHHHHHHHHhCCH---------------
Confidence            445577778999999999988653       32        34566 889999999999997631               


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHH-HHhhcC----hh----HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCR-IGSQMR----ES----DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~-l~~~l~----~~----~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      +.+..+++|+++.||..++..+.. +...+-    .+    .....--+.+..+.+|+.|.||..++..+       +  
T Consensus       125 ~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~--  195 (244)
T 1lrv_A          125 EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL-------R--  195 (244)
T ss_dssp             GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C--
T ss_pred             HHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C--
Confidence            123444555555555555543210 000000    00    00001113445666777777777777653       1  


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154          160 LKTELRSIYTQLCQDDMPMVRRSAASNLR  188 (211)
Q Consensus       160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~  188 (211)
                           .+.+..|++|++|.||.+++.+++
T Consensus       196 -----~~~L~~Ll~D~d~~VR~~aa~~l~  219 (244)
T 1lrv_A          196 -----GDDLLELLHDPDWTVRLAAVEHAS  219 (244)
T ss_dssp             -----GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred             -----HHHHHHHHcCCCHHHHHHHHHcCC
Confidence                 146788899999999999999876

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.11  E-value=1.2e-10  Score=91.61  Aligned_cols=117  Identities=11%  Similarity=0.014  Sum_probs=95.6

Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHH-hhcCCCchHHHhHHhHHHhhccCCChHHHH
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKR-LAAGEWFTARVSACGLFHIAYPSAPDILKT  162 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~-l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~  162 (211)
                      .+.++++...|.++++++||..|++.+... .      ....++|.+.. ++.|++|+||..++..+..++...+.+   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            567889999999999999999999977776 2      12668999998 999999999999999999998744544   


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154          163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL  210 (211)
Q Consensus       163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L  210 (211)
                      ..++.+...++|++++||++|+..+...++......-.+.++|++..|
T Consensus       139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L  186 (240)
T 3l9t_A          139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL  186 (240)
T ss_dssp             TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh
Confidence            367889999999999999999999866555433344456688888765

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.11  E-value=6.8e-10  Score=89.52  Aligned_cols=179  Identities=12%  Similarity=0.076  Sum_probs=136.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh---hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc------cc
Q 039154           14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTP---KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV------EH   83 (211)
Q Consensus        14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~---~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~------~~   83 (211)
                      +...|-|.|...|..++..|.+....-. +.+.   ..+++.+.- +.|.++.|-..+.+.|..+...+++.      ..
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e  129 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE  129 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            3445557788999999988877644321 1111   113455444 66899999999989888877655432      12


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE  163 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~  163 (211)
                      ...++|.+.+=+.|..+.||..+-..+..+.+..++..+..+++.    -.++.+|++|..|+..+..+.+..|.. ...
T Consensus       130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~----g~ksKN~R~R~e~l~~l~~li~~~G~~-~~~  204 (266)
T 2of3_A          130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD----ALKSKNARQRSECLLVIEYYITNAGIS-PLK  204 (266)
T ss_dssp             HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHHCSG-GGG
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHHHHHhcCCC-ccc
Confidence            357889988888999999999999999999988888776666554    347789999999999999888777765 233


Q ss_pred             HH---HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154          164 LR---SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH  198 (211)
Q Consensus       164 l~---~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~  198 (211)
                      .+   |...+++.|++..||.+|...+.++-...|...
T Consensus       205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            56   889999999999999999999999999998753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.04  E-value=2.1e-09  Score=82.78  Aligned_cols=147  Identities=16%  Similarity=0.097  Sum_probs=115.5

Q ss_pred             hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcC
Q 039154           45 TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMR  118 (211)
Q Consensus        45 ~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~  118 (211)
                      ......|.+.. +.+++++||..++..|.+++..  .+..     ....+|.+..+++++++.||..|+.+|..++..-+
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence            34455677777 8889999999999999998852  2221     23467899999999999999999999999985432


Q ss_pred             h---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          119 E---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       119 ~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .   .....-.+|.+.++.++++..+|..++..+..++..-...    .....+|.++++++++++.||..++..|.+++
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            2   1233447899999999999999999999999998754332    23458899999999999999999999999998


Q ss_pred             hh
Q 039154          192 AT  193 (211)
Q Consensus       192 ~~  193 (211)
                      ..
T Consensus       167 ~~  168 (210)
T 4db6_A          167 SG  168 (210)
T ss_dssp             TS
T ss_pred             cC
Confidence            74

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.03  E-value=3.8e-09  Score=94.94  Aligned_cols=101  Identities=11%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      -++.+.+.|+|.|+.+|..|++.++.|+    ....-..++|.+.+ +.|.++.||++|+.+++.+... . ++....++
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~-p~~v~~~~  181 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-V-PELMEMFL  181 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-C-GGGGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-C-hHHHHHHH
Confidence            4788999999999999999999998874    44555778888888 8999999999999999999873 2 34456788


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~  116 (211)
                      +.+..++.|.++.|+.+|+..+..+++.
T Consensus       182 ~~l~~lL~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          182 PATKNLLNEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             GGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.99  E-value=8.5e-11  Score=84.85  Aligned_cols=121  Identities=21%  Similarity=0.173  Sum_probs=88.5

Q ss_pred             CcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccc
Q 039154            7 PLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH   85 (211)
Q Consensus         7 ~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~   85 (211)
                      ...++..++..|+|+++.+|..|+..|..+    |...     +|.+.+ +.|+++.||..++..|+.+..    +    
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~----~----   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRM----GDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD----E----   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSC----SSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----H----
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHh----CchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----H----
Confidence            456688999999999999999988777643    4322     477777 889999999999999999642    2    


Q ss_pred             ccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154           86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA  152 (211)
Q Consensus        86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l  152 (211)
                      ..+|.|..+++|+++.||..|+.+|..++.        ...+|.+.++.+|+.+.||..++..+..+
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            346777778889999999999999999873        34567777788899999999999887653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.97  E-value=1.9e-09  Score=94.00  Aligned_cols=178  Identities=15%  Similarity=0.094  Sum_probs=129.7

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----   83 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----   83 (211)
                      -+..+++.+++.++..|..++..+..++..-+........+|.+.+ +.+++++||..++..|.+++..  .++.     
T Consensus       228 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~  305 (529)
T 1jdh_A          228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVC  305 (529)
T ss_dssp             HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--CHHHHHHHH
T ss_pred             CHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence            3667788888999999999999999998766555556678999999 8899999999999999998762  1111     


Q ss_pred             ccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCC-chHHHhHHhHHHhhcc
Q 039154           84 AHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEW-FTARVSACGLFHIAYP  154 (211)
Q Consensus        84 ~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~  154 (211)
                      ....+|.+..++.+.  ++.||..|+.+|..++...+..      ......+|.+.++..++. |.+|..++..+..++.
T Consensus       306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            123467777777653  3799999999999997764432      223346888888888876 7999999999999986


Q ss_pred             CCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154          155 SAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       155 ~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~  189 (211)
                      .-...   ....++|.++.+++|.++.||+.++..+.+
T Consensus       386 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             SGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence            32222   234678999999999999999977655544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.94  E-value=1.8e-08  Score=81.57  Aligned_cols=181  Identities=12%  Similarity=0.028  Sum_probs=132.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh-------hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc---
Q 039154           14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTP-------KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE---   82 (211)
Q Consensus        14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-------~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~---   82 (211)
                      +-+.|.|.+=..|.+++..+..+......+...       ..+.+.+.. +.|.+..|...+.+.+..++...|...   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            448899999999999999988766544333222       234566667 789999999999999999888665422   


Q ss_pred             -----cccccchHH-hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           83 -----HAHVLLPPL-ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        83 -----~~~~llp~l-~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                           ....++|.+ +..+.|....+|..|..++..+++.....   ..++..+....+..++.+|..++..+..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                 223455654 45678999999999999999998765432   234455666778899999999988888876665


Q ss_pred             ChH------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          157 PDI------LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       157 ~~~------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      |..      ..+.+++.+.+++.|.++.||.+|...++.+-..+|+.
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            543      33557777888999999999999999999999999964

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=98.92  E-value=2.1e-08  Score=88.34  Aligned_cols=180  Identities=12%  Similarity=0.130  Sum_probs=141.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc--
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE--   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~--   82 (211)
                      +..+...++++++.++..++..|..++.  +++.     ....++|.+.+ +.+.++.|+..++..|++++.  |.+.  
T Consensus       253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~--~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~--~~~~~~  328 (529)
T 3tpo_A          253 LPTLVRLLHHNDPEVLADSCWAISYLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT--GTDEQT  328 (529)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhh--hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc--cchHHH
Confidence            4567788899999999999999988763  2221     23456788888 888999999999999999875  2222  


Q ss_pred             ---cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           83 ---HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        83 ---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                         .....+|.|..++++.+..||..|+.+|..++..-...   ....-++|.+..+..++.+.+|..++..+..++..-
T Consensus       329 ~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~  408 (529)
T 3tpo_A          329 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG  408 (529)
T ss_dssp             HHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence               22346788999999999999999999999998643221   223458899999999999999999999999887665


Q ss_pred             ChHH-----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          157 PDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       157 ~~~~-----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      ..+.     ....++.+..|++..++.|+..++..|.++.+..
T Consensus       409 ~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          409 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            5442     2346789999999999999999999999887654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.91  E-value=3.9e-08  Score=86.28  Aligned_cols=180  Identities=12%  Similarity=0.075  Sum_probs=132.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      ++.+++.++|+|++.+..|++.+.++.+.=...    -...-.+|.|.+ +. .++++++..++..|.+++.  |.++..
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e~~  136 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQT  136 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHHHH
Confidence            889999999999999999999887764221110    123346798888 64 5679999999999999985  333222


Q ss_pred             -----cccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCc-----hHHHhHHhHHHh
Q 039154           85 -----HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWF-----TARVSACGLFHI  151 (211)
Q Consensus        85 -----~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~-----~vR~~~a~~l~~  151 (211)
                           .-.+|.|..++++++..||+.|+.+|.+++..-+.   .....-.+|.+..+..++..     .+...++..+..
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  216 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  216 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence                 23579999999999999999999999999865322   12233456667777665432     345566777777


Q ss_pred             hccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          152 AYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       152 l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ++..-...    ....++|.+.++++++++.||..++..|..++.
T Consensus       217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~  261 (510)
T 3ul1_B          217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD  261 (510)
T ss_dssp             HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred             HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            76543222    356899999999999999999999999988875

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=98.90  E-value=2.2e-08  Score=88.20  Aligned_cols=188  Identities=14%  Similarity=0.109  Sum_probs=138.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHH--------------------hCCc---------------------------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARA--------------------LGEE---------------------------   43 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~--------------------lg~~---------------------------   43 (211)
                      +..|+..|+|.+..+|..|+..|..||..                    +...                           
T Consensus       164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~  243 (529)
T 3tpo_A          164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA  243 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence            56677888888888888888877777631                    1100                           


Q ss_pred             ---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154           44 ---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        44 ---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~  116 (211)
                         .....++|.+.. +.+++++|+..++..|..++..-..   .-...-++|.|..++.+++..|+..|+.++..++..
T Consensus       244 ~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~  323 (529)
T 3tpo_A          244 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG  323 (529)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc
Confidence               011345677777 7888899999999888887762110   012345778899999999999999999999998754


Q ss_pred             cChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154          117 MRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       117 l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~  189 (211)
                      -+..   .+..-.+|.+..+.+++...+|..+|..+..++..-...    ....++|.++.++++.++.||+.|+..|.+
T Consensus       324 ~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n  403 (529)
T 3tpo_A          324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN  403 (529)
T ss_dssp             CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            3221   223446788888999999999999999999997654433    234588999999999999999999999999


Q ss_pred             HHhhhCchh
Q 039154          190 FAATVEPAH  198 (211)
Q Consensus       190 ~~~~~~~~~  198 (211)
                      ++..-.++.
T Consensus       404 l~~~~~~~~  412 (529)
T 3tpo_A          404 YTSGGTVEQ  412 (529)
T ss_dssp             HHHHSCHHH
T ss_pred             HHcCCCHHH
Confidence            987655543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.89  E-value=4.2e-08  Score=86.08  Aligned_cols=180  Identities=12%  Similarity=0.109  Sum_probs=140.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc--
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE--   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~--   82 (211)
                      +..+...+++++..+|..++..|..++.  ++..     ....++|.+.+ +.+.++.|+..++..+++++..  .+.  
T Consensus       234 lp~L~~LL~~~~~~v~~~A~~aL~~L~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~  309 (510)
T 3ul1_B          234 LPTLVRLLHHNDPEVLADSCWAISYLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQT  309 (510)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhh--chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHH
Confidence            4567778899999999999999988763  2221     23456788888 8889999999999999998752  221  


Q ss_pred             ---cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           83 ---HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        83 ---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                         .....+|.|..++++.+..||..|+.+|..++..-...   ....-++|.+..+..+..+.+|..++..+..++..-
T Consensus       310 ~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~  389 (510)
T 3ul1_B          310 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG  389 (510)
T ss_dssp             HHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence               12346788889999999999999999999997643221   223458899999999999999999999999987765


Q ss_pred             ChHH-----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          157 PDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       157 ~~~~-----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      ..+.     ....++.+..|++++++.|+..+...|.++.+..
T Consensus       390 ~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          390 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            5542     2345789999999999999999999999887654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.89  E-value=3.2e-08  Score=86.15  Aligned_cols=199  Identities=10%  Similarity=0.011  Sum_probs=140.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--h-hhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCc--ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--T-PKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG--VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~-~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~--~~~   83 (211)
                      +..+++.|+++++.+|..|+..|..++..-....  . ....+|.+.+ +. ++++++|..++..|..++..-..  .-.
T Consensus        19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~   98 (529)
T 1jdh_A           19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF   98 (529)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH
Confidence            7788889999999999999999999874221100  0 1245666666 54 45899999999999998753110  011


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---  157 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~---  157 (211)
                      ..-.+|.|..+++++++.+|..|+..|..++..-+.  + ....-.+|.+.++..++++.+|..++..+..++..-.   
T Consensus        99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A           99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            234678899999999999999999999999887433  2 2245688999999999999999888777665543210   


Q ss_pred             --------------------------------------hH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          158 --------------------------------------DI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       158 --------------------------------------~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                                                            ++     .....++.+..++++.++.||+.++..+..++...
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  258 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA  258 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence                                                  00     11235777888888888999999998888888765


Q ss_pred             CchhhHHHHHHHHHh
Q 039154          195 EPAHLKTDIMSIFED  209 (211)
Q Consensus       195 ~~~~~~~~llp~~~~  209 (211)
                      +.......++|.+.+
T Consensus       259 ~~~~~~~~~i~~L~~  273 (529)
T 1jdh_A          259 TKQEGMEGLLGTLVQ  273 (529)
T ss_dssp             TTCSCCHHHHHHHHH
T ss_pred             hhhHHHHhHHHHHHH
Confidence            443334455665544

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.82  E-value=3.2e-08  Score=81.20  Aligned_cols=168  Identities=11%  Similarity=0.029  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccc-----ccccchHHhhh
Q 039154           24 QLRLNSIRRLSTIARALGEER--TPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEH-----AHVLLPPLETL   94 (211)
Q Consensus        24 ~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~~~llp~l~~l   94 (211)
                      +.|..|+..|..+...+....  .+.--+|.+..  +.+.+++||..++..|++++..  .+..     ..-.+|.|..+
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~--n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN--VAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHH
Confidence            568888888877664322110  11123344433  6778999999999999999862  2222     22356777777


Q ss_pred             ccc-hhhHHHHHHHHHHHHHHhhcCh--h-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHH
Q 039154           95 CTV-EETCMRDKAVESLCRIGSQMRE--S-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS  166 (211)
Q Consensus        95 ~~d-~~~~VR~~a~~~l~~l~~~l~~--~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~  166 (211)
                      ++. .+..||..|+.+|..++...++  + ....-.+|.+..+.+++...+|..+|..+..++..-...    .....+|
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            774 4789999999999999876543  2 223457888888889999999999999999987662222    3456889


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          167 IYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       167 ~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .+..|+.++++.||..++..|+.++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999986

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.81  E-value=9.8e-08  Score=85.86  Aligned_cols=198  Identities=10%  Similarity=0.022  Sum_probs=135.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc--ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG--VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~--~~~   83 (211)
                      +..+++.|+++++.+|..|+..|..++..-....   .....+|.+.+ +.+ +++++|+.++..|..++..-..  .-.
T Consensus        16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~   95 (644)
T 2z6h_A           16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF   95 (644)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence            7788899999999999999999999985432111   01245666666 544 5899999999999987763111  011


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh--
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--  158 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~--  158 (211)
                      ....+|.|..++++++..+|..|+.+|.+++..-+..   ....-.+|.+.++..+++++++..++..+..++..-+.  
T Consensus        96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHH
Confidence            2346788999999999999999999999999875332   22456788888888888888888777776665532110  


Q ss_pred             ---------------------------------------H-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          159 ---------------------------------------I-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       159 ---------------------------------------~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                                                             +     .....++.+.+++++.+..+|+.++..|.+++..-
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~  255 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA  255 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc
Confidence                                                   0     01124566777777777777777777777776654


Q ss_pred             CchhhHHHHHHHHH
Q 039154          195 EPAHLKTDIMSIFE  208 (211)
Q Consensus       195 ~~~~~~~~llp~~~  208 (211)
                      +.......++|.+.
T Consensus       256 ~~~~~~~~~i~~Lv  269 (644)
T 2z6h_A          256 TKQEGMEGLLGTLV  269 (644)
T ss_dssp             TTCCSCHHHHHHHH
T ss_pred             hhhhhhhhHHHHHH
Confidence            33333334555443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.80  E-value=9.9e-08  Score=80.20  Aligned_cols=184  Identities=15%  Similarity=0.121  Sum_probs=136.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhh-----chhhhhhh-c-CCChHHHHHHHHHHHhccccccCc--c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPK-----ELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGG--V   81 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~-----~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~--~   81 (211)
                      |..|+..|+|+++.+|..|+..|..++.. ..+..+.     ..+|.+.+ + ...++++++.++..|.+++..-..  .
T Consensus       129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~  207 (354)
T 3nmw_A          129 MRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  207 (354)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence            77888999999999999999999998642 1222333     33577766 3 456789999999999998863211  1


Q ss_pred             cc--ccccchHHhhhccchhh----HHHHHHHHHHHHHHhh--cChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHH
Q 039154           82 EH--AHVLLPPLETLCTVEET----CMRDKAVESLCRIGSQ--MRESDL----VDWFIPLVKRLAAGEWFTARVSACGLF  149 (211)
Q Consensus        82 ~~--~~~llp~l~~l~~d~~~----~VR~~a~~~l~~l~~~--l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l  149 (211)
                      ..  ..-.+|.|..++.+..+    .|++.|+..|..++..  -+++..    ..-.+|.+.++..+.+..++..++..+
T Consensus       208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  287 (354)
T 3nmw_A          208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  287 (354)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence            11  34567888888886644    5999999999998863  122221    233688888999999999999999999


Q ss_pred             HhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          150 HIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       150 ~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      ..++..-...    .....+|.+.+|+++.++.+|+.|+..|.+++..-+
T Consensus       288 ~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9997542222    234568999999999999999999999999998633

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.80  E-value=1.6e-08  Score=90.94  Aligned_cols=173  Identities=15%  Similarity=0.103  Sum_probs=128.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----A   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~   84 (211)
                      +..+++.+++.+...|..++..|..++..-.........+|.+.+ +.+++++||..++..|.+++..  .+..     .
T Consensus       226 l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~  303 (644)
T 2z6h_A          226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQ  303 (644)
T ss_dssp             HHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence            667788888899999999999999998765555556678999999 8889999999999999998762  2111     1


Q ss_pred             cccchHHhhhccchh--hHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCC-chHHHhHHhHHHhhccC
Q 039154           85 HVLLPPLETLCTVEE--TCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEW-FTARVSACGLFHIAYPS  155 (211)
Q Consensus        85 ~~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~  155 (211)
                      ...+|.|..++.+.+  +.||..|+.+|..++...+.+      ......+|.+.++..++. +.+|..++..+..++..
T Consensus       304 ~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~  383 (644)
T 2z6h_A          304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  383 (644)
T ss_dssp             TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence            235677777777643  799999999999998654432      223457888888888765 89999999999998764


Q ss_pred             CChH---HHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039154          156 APDI---LKTELRSIYTQLCQDDMPMVRRSAAS  185 (211)
Q Consensus       156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~  185 (211)
                      -...   .....+|.+++++++..+.||+.++.
T Consensus       384 ~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~  416 (644)
T 2z6h_A          384 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  416 (644)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence            2222   24567888899988876666554443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.79  E-value=8.1e-08  Score=88.53  Aligned_cols=199  Identities=9%  Similarity=0.027  Sum_probs=137.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-h--hhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCc--ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-T--PKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG--VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~--~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~--~~~   83 (211)
                      +..|+..|+++++.+|..|+..|..++..-+... .  ....+|.+.+ +. ++++++|+.++..|..++..-..  ...
T Consensus       152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~  231 (780)
T 2z6g_A          152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF  231 (780)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            6677888889999999999999999875322110 0  1245676666 54 45899999999999987653111  111


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC----
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA----  156 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~----  156 (211)
                      ....+|.|..++++++..||..|+.+|..++..-+..  .+ ..-.+|.+.++.+++++.+|..++..+..++...    
T Consensus       232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH
Confidence            2356888999999999999999999999999874332  22 3567888888888888888887766665444211    


Q ss_pred             ------C-------------------------------hH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          157 ------P-------------------------------DI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       157 ------~-------------------------------~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                            +                               ..     .....++.+..++++.++.+++.++..|.+++...
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~  391 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA  391 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence                  0                               00     01124577888888888888888888888888765


Q ss_pred             CchhhHHHHHHHHHh
Q 039154          195 EPAHLKTDIMSIFED  209 (211)
Q Consensus       195 ~~~~~~~~llp~~~~  209 (211)
                      .+......++|.+.+
T Consensus       392 ~~~~~~~~~i~~Lv~  406 (780)
T 2z6g_A          392 TKQEGMEGLLGTLVQ  406 (780)
T ss_dssp             TTCSCCHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHH
Confidence            443334456665543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.78  E-value=1.4e-08  Score=93.65  Aligned_cols=169  Identities=15%  Similarity=0.110  Sum_probs=124.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----A   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~   84 (211)
                      +..++..+++.+...+..++..|..++..-+.......++|.+.+ +.+.+++||..++..|++++..  ....     .
T Consensus       362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~--~~~~~~~i~~  439 (780)
T 2z6g_A          362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQ  439 (780)
T ss_dssp             HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHT
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHH
Confidence            567788888999999999999999998766555556788999999 8899999999999999998762  2111     1


Q ss_pred             cccchHHhhhccch-h-hHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCC-chHHHhHHhHHHhhccC
Q 039154           85 HVLLPPLETLCTVE-E-TCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEW-FTARVSACGLFHIAYPS  155 (211)
Q Consensus        85 ~~llp~l~~l~~d~-~-~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~  155 (211)
                      ...+|.|..++.+. + ..||..|+.+|..++...+..      ......+|.+.++..++. |.+|..++..+..++..
T Consensus       440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  519 (780)
T 2z6g_A          440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  519 (780)
T ss_dssp             TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence            23567777777664 3 389999999999997654432      123446788888777665 69999999999999752


Q ss_pred             CChH---HHHHHHHHHHHhcCCCCHHHHH
Q 039154          156 APDI---LKTELRSIYTQLCQDDMPMVRR  181 (211)
Q Consensus       156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~  181 (211)
                      -...   ....++|.+++++++..+.+|+
T Consensus       520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~  548 (780)
T 2z6g_A          520 PANHAPLREQGAIPRLVQLLVRAHQDTQR  548 (780)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcchhHHH
Confidence            1111   1245778888888776554444

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.78  E-value=9.1e-08  Score=86.07  Aligned_cols=174  Identities=15%  Similarity=0.125  Sum_probs=134.7

Q ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc
Q 039154           11 IAVLTDELKND---DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (211)
Q Consensus        11 l~~l~~~l~s~---~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~   86 (211)
                      ++.+.+.++++   +...|..++..+--+ ..+|.+-  ..+.+-+.+ +..++.+.|+.+--.+..+++  +.++....
T Consensus        37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--~~~e~~~L  111 (621)
T 2vgl_A           37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVN--SNSELIRL  111 (621)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--CCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCcHHHHH
Confidence            56667777753   677788887777443 5688754  356666667 788999999999888888776  22333334


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh--cCCCchHHHhHHhHHHhhccCCChHHH-HH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDILK-TE  163 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~--~d~~~~vR~~~a~~l~~l~~~~~~~~~-~~  163 (211)
                      ..+.+.+=++|.++.+|-.|+.+++.+..    .+..+.++|.+.++.  .|.++.||+.|+..+..++...+.... ..
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~  187 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD  187 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence            45667777788999999999999999854    446678889999998  999999999999999999885432221 37


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      +.+.+.+++.|+++.|+.+|...+.+++..
T Consensus       188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          188 WTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence            889999999999999999999999988764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.73  E-value=4.8e-07  Score=83.35  Aligned_cols=181  Identities=11%  Similarity=0.053  Sum_probs=135.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhc-----hhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKE-----LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~-----L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      .+..|+..++|+++.+|..|+..|..||   |.+..+..     .+|.+.. +...++.+|+.++.+|.+++..-.++..
T Consensus       496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          496 ITTALCALAKTESHNSQELIARVLNAVC---GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            4778899999999999999999999997   33334443     3477777 7778889999999999998753222111


Q ss_pred             -----ccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154           84 -----AHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (211)
Q Consensus        84 -----~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~  154 (211)
                           ....+|.|..++..+ +...+..|+.+|..++..-+.   ..+..-.+|.+..+..+++..||..++..+..++.
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~  652 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM  652 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence                 123678888888755 345567889999998875321   23344578889998888999999999999999976


Q ss_pred             CCChH--HH--HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          155 SAPDI--LK--TELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       155 ~~~~~--~~--~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .-...  +.  ...++.++.|++.++..||++|+..|..++..
T Consensus       653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~  695 (810)
T 3now_A          653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV  695 (810)
T ss_dssp             SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence            32111  11  23678999999999999999999999999874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.69  E-value=3.1e-07  Score=85.29  Aligned_cols=168  Identities=16%  Similarity=0.120  Sum_probs=108.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCcccccc---
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAH---   85 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~---   85 (211)
                      ++.|+.-+.+++...|..|+-.|+.+  .+|+.  ...+.|+.++.+  ++++.||+.++..||.+.  .|.++...   
T Consensus       474 ~e~L~~~L~dd~~~~~~~AalALGli--~vGTgn~~ai~~LL~~~~e--~~~e~vrR~aalgLGll~--~g~~e~~~~li  547 (963)
T 4ady_A          474 YEALKEVLYNDSATSGEAAALGMGLC--MLGTGKPEAIHDMFTYSQE--TQHGNITRGLAVGLALIN--YGRQELADDLI  547 (963)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHT--TTCGGGGHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhh--hcccCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHhhh--CCChHHHHHHH
Confidence            56667777777776776666666655  24543  233444444332  445567777777777542  22222111   


Q ss_pred             ------------------------------ccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154           86 ------------------------------VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA  135 (211)
Q Consensus        86 ------------------------------~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~  135 (211)
                                                    .|-.+|..+.+|.++.||..|+-+|+.++-.-+     +.+...+..+.+
T Consensus       548 ~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-----e~v~rlv~~L~~  622 (963)
T 4ady_A          548 TKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-----TTVPRIVQLLSK  622 (963)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-----SSHHHHTTTGGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHh
Confidence                                          122234444455566666666666666543321     234444455778


Q ss_pred             CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       136 d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      +..+.||+.++..++.++..-+..   ..+..+..+.+|++..||++|+.+|+.++.
T Consensus       623 ~~d~~VR~gAalALGli~aGn~~~---~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          623 SHNAHVRCGTAFALGIACAGKGLQ---SAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSSCCH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             cCCHHHHHHHHHHHHHhccCCCcH---HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            888999999999999998777653   677788889999999999999999988874

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.68  E-value=8.4e-08  Score=86.18  Aligned_cols=172  Identities=12%  Similarity=0.008  Sum_probs=131.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      ++.+.+.+++.+...|..+++.+--+ ..+|.+-  ..+.+-+.+ +.+++.+.|+..--.+..+++.  .++......+
T Consensus        36 ~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in  110 (618)
T 1w63_A           36 CAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTN  110 (618)
T ss_dssp             HHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHH
Confidence            45566677777777777777666443 4677643  345555556 6788888888887777766652  2233334556


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT  169 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~  169 (211)
                      .|.+-++|.++.||..|+.+|+.++.    .+....++|.+.++.+|++..||+.++..+..++...++ ....+++.+.
T Consensus       111 ~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~  185 (618)
T 1w63_A          111 CIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATK  185 (618)
T ss_dssp             HHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTT
T ss_pred             HHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHH
Confidence            77778889999999999999999973    355678899999999999999999999999999876443 3347888889


Q ss_pred             HhcCCCCHHHHHHHHHhhHHHHh
Q 039154          170 QLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       170 ~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      .++.|+++.|+.+|+..|.+++.
T Consensus       186 ~lL~D~d~~V~~~Al~~L~~i~~  208 (618)
T 1w63_A          186 NLLNEKNHGVLHTSVVLLTEMCE  208 (618)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHCC
T ss_pred             HHhCCCCHhHHHHHHHHHHHHHH
Confidence            99999999999999999988765

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.68  E-value=6.1e-07  Score=80.69  Aligned_cols=102  Identities=9%  Similarity=0.018  Sum_probs=85.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c--CCChHHHHHHHHHHHhccccccCccccc-cc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N--NDDDDEVLLAMAEELGVFIPYVGGVEHA-HV   86 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~--~D~~~~VR~~~a~~L~~l~~~ig~~~~~-~~   86 (211)
                      ++.+.+.++|.|+.+|-.|++.++.|    +....-+.+.|.+.+ +  .|.++.||+.|+-++..+.+ ..++... ..
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i----~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~~~~  187 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANV----GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVPMGD  187 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHH----CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCCCCS
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcCchh
Confidence            77889999999999999999999876    344566788899988 7  89999999999999999988 3333322 27


Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhc
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQM  117 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l  117 (211)
                      +.+.+..++.|.++.|+.+|+..+..+++.-
T Consensus       188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence            8889999999999999999999998887653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.67  E-value=2.8e-07  Score=86.58  Aligned_cols=132  Identities=16%  Similarity=0.090  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHhccccccCccccccccchHHhhhcc------chhhHHHHHHHHHHHHHHhhc-----Chh------HHHH
Q 039154           62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT------VEETCMRDKAVESLCRIGSQM-----RES------DLVD  124 (211)
Q Consensus        62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~------d~~~~VR~~a~~~l~~l~~~l-----~~~------~~~~  124 (211)
                      .+|++++..|..++...| +.....+++.+...+.      +++|..|++|+.+++.++...     +..      .+..
T Consensus       376 s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~  454 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD  454 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred             CcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence            489999999999999877 5556667777666655      567899999999999998653     111      2222


Q ss_pred             hhHHHHHHhhcCC---CchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          125 WFIPLVKRLAAGE---WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       125 ~l~p~i~~l~~d~---~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      .+...+.....|+   ...||..+|..++.++..+.+++...+++.+++.+.|+++.||.+|+.+|..++...
T Consensus       455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence            2222222223455   778999999999999998877778888999999999999999999999999998854

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.63  E-value=7.7e-07  Score=81.97  Aligned_cols=178  Identities=12%  Similarity=0.093  Sum_probs=136.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCcccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      +..|+..|++.++..|..|+..|..++..-.++.     .....+|.+.+ +..+ +...+..++..|.+++..  +++.
T Consensus       538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~--~d~~  615 (810)
T 3now_A          538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM--NESV  615 (810)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS--CHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC--CHHH
Confidence            5677888999999999999999999875433322     11246777777 5544 556667888999998863  2221


Q ss_pred             -----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH-----HhhHHHHHHhhcCCCchHHHhHHhHHHhhc
Q 039154           84 -----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV-----DWFIPLVKRLAAGEWFTARVSACGLFHIAY  153 (211)
Q Consensus        84 -----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~-----~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~  153 (211)
                           ..-.+|.|..++.+++..||..|+..+.+++..  ++...     .-.+|.+..|...+...+|..+|..+..++
T Consensus       616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt  693 (810)
T 3now_A          616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT  693 (810)
T ss_dssp             HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence                 234578899999999999999999999999863  33222     236788889999999999999999999997


Q ss_pred             cCCChH----HH-HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          154 PSAPDI----LK-TELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       154 ~~~~~~----~~-~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      ..-...    .. ...+|.+..|+++.+..||+.|+..+.+++.
T Consensus       694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            743222    22 4688999999999999999999999999987

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.56  E-value=1.3e-06  Score=75.81  Aligned_cols=183  Identities=15%  Similarity=0.123  Sum_probs=135.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhh-----chhhhhhh-c-CCChHHHHHHHHHHHhccccccCc--c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPK-----ELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGG--V   81 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~-----~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~--~   81 (211)
                      |..|+..|+++++.++..|+..|..++.. ..+..+.     ..+|.+.+ + ...++.++..++..|.+++..-..  .
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            77888999999999999999999888631 1122333     33566666 3 456789999999999998863211  1


Q ss_pred             cc--ccccchHHhhhccchhh----HHHHHHHHHHHHHHhh--cChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHH
Q 039154           82 EH--AHVLLPPLETLCTVEET----CMRDKAVESLCRIGSQ--MRESD----LVDWFIPLVKRLAAGEWFTARVSACGLF  149 (211)
Q Consensus        82 ~~--~~~llp~l~~l~~d~~~----~VR~~a~~~l~~l~~~--l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l  149 (211)
                      ..  ..-.+|.|..++....+    .|++.|+..|..++..  -+++.    ...-.+|.+.++..+.+..++..++..+
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL  403 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  403 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence            11  24567888888876644    4999999999998863  22222    1233688888999999999999999999


Q ss_pred             HhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          150 HIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       150 ~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      ..++..-...    .....+|.+..|++..++.+|+.|+..|.+++..-
T Consensus       404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9997542222    23457899999999999999999999999998753

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.50  E-value=2.2e-07  Score=77.92  Aligned_cols=106  Identities=9%  Similarity=0.129  Sum_probs=87.7

Q ss_pred             CCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154            5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus         5 ~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      ++-+.-++.+.+.+++.|+..|-.|++.++.|.    .+..-+.+.+.+.+ +.|.+|.||++|+-....+.+. . ++.
T Consensus       100 ~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~----~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~-pe~  173 (355)
T 3tjz_B          100 EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT----DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-S-FDV  173 (355)
T ss_dssp             SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC----CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-C-HHH
T ss_pred             HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-C-HHH
Confidence            455667899999999999999999999998773    44566788899999 9999999999999998887763 2 334


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~  116 (211)
                      ...+++-+.+++.|.++.|...|+..+..+.+.
T Consensus       174 v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          174 VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence            456888899999999999998888888887763

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.49  E-value=1.5e-06  Score=70.05  Aligned_cols=146  Identities=11%  Similarity=0.104  Sum_probs=119.0

Q ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhCCc---ch---hhchhhhhhh-cCCChHHHHHHHHHHHhccccccC
Q 039154           11 IAVLTDELK----NDDIQLRLNSIRRLSTIARALGEE---RT---PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG   79 (211)
Q Consensus        11 l~~l~~~l~----s~~~~~R~~a~~~l~~ia~~lg~~---~~---~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig   79 (211)
                      ++.+..++.    +.|+.+-..++..|..+...++..   -.   ...++|++.+ +.|..+.||..+-+.+..+....+
T Consensus        85 lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~  164 (266)
T 2of3_A           85 SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG  164 (266)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC
Confidence            666777665    789999888999998887666442   22   3678899999 999999999999988888877554


Q ss_pred             ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhH---HHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           80 GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFI---PLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        80 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~---p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                      +.    .+.+.+.+-++..++.+|..++..+..+.+..|...  ...+   |.+.++.+|+.-.||.+|...+..+|...
T Consensus       165 ~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          165 PL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             HH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            43    455666566688899999999999999999998873  4467   99999999999999999999999999999


Q ss_pred             ChHHHH
Q 039154          157 PDILKT  162 (211)
Q Consensus       157 ~~~~~~  162 (211)
                      |+..++
T Consensus       239 Gd~v~k  244 (266)
T 2of3_A          239 GDQMWK  244 (266)
T ss_dssp             TTHHHH
T ss_pred             hHHHHH
Confidence            987444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.43  E-value=5.4e-06  Score=77.65  Aligned_cols=185  Identities=14%  Similarity=0.167  Sum_probs=137.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHH-HhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-cccc-
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIAR-ALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-HAHV-   86 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~-~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-~~~~-   86 (211)
                      ++.+.+.+...+...|..+...+..+.. ..+.......++..+.+ +.+...-  ..++..+..+++..|... ...+ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            4555666665445666677766666543 22222333456666666 6665444  788888888887776422 2222 


Q ss_pred             --cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHH-hhcCCCchHHHhHHhHHHhhccCCChH---H
Q 039154           87 --LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKR-LAAGEWFTARVSACGLFHIAYPSAPDI---L  160 (211)
Q Consensus        87 --llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~-l~~d~~~~vR~~~a~~l~~l~~~~~~~---~  160 (211)
                        ++|.+-....|....||.+|..+...+++.++++-. ..++|.+.. +.....|..+..+...+..++...+.+   .
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~  172 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR  172 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence              457777788899999999999999999999999988 666666654 544557999999999999999877555   5


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154          161 KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH  198 (211)
Q Consensus       161 ~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~  198 (211)
                      ..+++|.+.....|.-++|.+++...+.+++..++-..
T Consensus       173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d  210 (986)
T 2iw3_A          173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD  210 (986)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred             ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence            68999999999999999999999999999999987543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.42  E-value=2.7e-06  Score=71.41  Aligned_cols=185  Identities=14%  Similarity=0.145  Sum_probs=127.0

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcchhh------chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-----cccch
Q 039154           22 DIQLRLNSIRRLSTIARALGEERTPK------ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-----HVLLP   89 (211)
Q Consensus        22 ~~~~R~~a~~~l~~ia~~lg~~~~~~------~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-----~~llp   89 (211)
                      ++..|..|+..|..++  .+.+..+.      -.+|.+.+ +..++++|+..++..|.+++.. ..+...     .-.+|
T Consensus        97 ~~~~q~~Aa~aL~nLa--~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip  173 (354)
T 3nmw_A           97 SITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVK  173 (354)
T ss_dssp             HHHHHHHHHHHHHHHT--SSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHHHH--cCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHH
Confidence            4677888999998886  34433333      34888888 8888999999999999998752 111222     23467


Q ss_pred             HHhhh-ccchhhHHHHHHHHHHHHHHhhcCh--hHH--HHhhHHHHHHhhcCCC----chHHHhHHhHHHhhccC--CCh
Q 039154           90 PLETL-CTVEETCMRDKAVESLCRIGSQMRE--SDL--VDWFIPLVKRLAAGEW----FTARVSACGLFHIAYPS--APD  158 (211)
Q Consensus        90 ~l~~l-~~d~~~~VR~~a~~~l~~l~~~l~~--~~~--~~~l~p~i~~l~~d~~----~~vR~~~a~~l~~l~~~--~~~  158 (211)
                      .|..+ .+..+..+++.|+.+|..++...+.  ..+  ..-.+|.+.++..++.    ..++..++..+..++..  -++
T Consensus       174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~  253 (354)
T 3nmw_A          174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE  253 (354)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH
Confidence            77775 5666788999999999999874322  222  3456788877776543    25888888888877652  223


Q ss_pred             HHH-----HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hhHHHHHHHHHhh
Q 039154          159 ILK-----TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HLKTDIMSIFEDL  210 (211)
Q Consensus       159 ~~~-----~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~~~L  210 (211)
                      +.+     ...+|.++.++++.+..|++.|+..|.+++.. .++    .+..-.+|.+.+|
T Consensus       254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~L  313 (354)
T 3nmw_A          254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL  313 (354)
T ss_dssp             HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHH
Confidence            322     34689999999999999999999999999742 122    2223346666554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.39  E-value=2.2e-05  Score=59.54  Aligned_cols=176  Identities=14%  Similarity=0.097  Sum_probs=121.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      ++.++..|.+|--.+|.+|+..+..+++..+.-  -..++|+-++.  .++.-..-..++..+|.++. +.++ ....+.
T Consensus        34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~--ksEaIpltqeIa~a~G~la~-i~Pe-~v~~vV  109 (253)
T 2db0_A           34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK--KSEAIPLTQEIAKAFGQMAK-EKPE-LVKSMI  109 (253)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH--HCCSHHHHHHHHHHHHHHHH-HCHH-HHHHHH
T ss_pred             HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh--hcccCchHHHHHHHHhHHHH-hCHH-HHHhhH
Confidence            678888997777899999999999998665532  12233333333  35555556788999999988 4444 445667


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      |.+..=..-.++.+|......|..+...-+.--  ..+..-+..|.+|++-.-|.++..-++.++. -+..+..-++|-+
T Consensus       110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~--~~v~rdi~smltskd~~Dkl~aLnFi~alGe-n~~~yv~PfLprL  186 (253)
T 2db0_A          110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGE-NSFKYVNPFLPRI  186 (253)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT-TTHHHHGGGHHHH
T ss_pred             HHHHHHHhcCCccceecHHHHHHHHHHhChHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-cCccccCcchHHH
Confidence            776555555588899988888888877643211  2233334556778775555555554444432 2334677789999


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      +.|+.|.+..||.++...|++++..
T Consensus       187 ~aLL~D~deiVRaSaVEtL~~lA~~  211 (253)
T 2db0_A          187 INLLHDGDEIVRASAVEALVHLATL  211 (253)
T ss_dssp             HGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHcCcchhhhHHHHHHHHHHHHc
Confidence            9999999999999999999999864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.37  E-value=1e-05  Score=66.20  Aligned_cols=142  Identities=11%  Similarity=-0.007  Sum_probs=109.1

Q ss_pred             HHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhCCcchh-----hchhhhhhh-cC-CChHHHHHHHHHHHhccccccCc--
Q 039154           11 IAVLTD-ELKNDDIQLRLNSIRRLSTIARALGEERTP-----KELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG--   80 (211)
Q Consensus        11 l~~l~~-~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~--   80 (211)
                      +..++. .|+|+++.+|..|+..|+.++..  .+..+     ...+|.+.+ +. +.++.||+.++-+|.+++..-..  
T Consensus        83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~--n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~  160 (296)
T 1xqr_A           83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN--VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL  160 (296)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence            556788 89999999999999999998742  22222     234566666 55 45789999999999998763211  


Q ss_pred             cc-cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154           81 VE-HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        81 ~~-~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      .. .....+|.|..++++.+..||..|+.+|..++.. +++    .+..-++|.+..+..++...+|..++..+..+...
T Consensus       161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            11 1235788999999999999999999999999876 333    23445788888998999999999999999998776

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.34  E-value=1.7e-05  Score=73.76  Aligned_cols=184  Identities=15%  Similarity=0.034  Sum_probs=101.2

Q ss_pred             HHHHHHHhc---CC--CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc
Q 039154           11 IAVLTDELK---ND--DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus        11 l~~l~~~l~---s~--~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      |...+..=.   .+  ++.+|..|+-.|+.+.  +|+.  +++++..+.+ +.|++..+|..++-.||.+.---|..+..
T Consensus       434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~--~GS~--~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai  509 (963)
T 4ady_A          434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAA--MGSA--NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI  509 (963)
T ss_dssp             HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS--TTCC--CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHcCccccccccccHHHHHHHHHHHHHHh--cCCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH
Confidence            455555433   22  3567888999998864  4654  3455556666 55677788999999999753211223333


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh---------------------------------hHHHHH
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW---------------------------------FIPLVK  131 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~---------------------------------l~p~i~  131 (211)
                      +.|+   ..+.++.++.||..++-+|+-+.-  +.++..+.                                 +-.++.
T Consensus       510 ~~LL---~~~~e~~~e~vrR~aalgLGll~~--g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~  584 (963)
T 4ady_A          510 HDMF---TYSQETQHGNITRGLAVGLALINY--GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH  584 (963)
T ss_dssp             HHHH---HHHHHCSCHHHHHHHHHHHHHHTT--TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHH---HHHhccCcHHHHHHHHHHHHhhhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3333   334456667888888888886632  11111111                                 111333


Q ss_pred             HhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          132 RLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       132 ~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      .+.+|+...||.+++..++.+...-.+    ...+.+..|.++.+|.||++++.++|.+..--|...+...|.|+.
T Consensus       585 ~~~~d~~d~VRraAViaLGlI~~g~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          585 VAVSDSNDDVRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHTSSSCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HhccCCcHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            334455555565555555554332211    122333345667778888888877777664444444444444443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.33  E-value=3.6e-06  Score=67.91  Aligned_cols=145  Identities=8%  Similarity=0.052  Sum_probs=110.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGV   81 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~   81 (211)
                      ..+...++|.|..+...+++.+..++..+|...        ....++|.+.+  +.|..+-+|..+.+.+-.++...+. 
T Consensus        58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-  136 (278)
T 4ffb_C           58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-  136 (278)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-
Confidence            456667889999999999999999998887642        22456776665  5788899999998888887764442 


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH-----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL-----VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~-----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                        ...++..+...++..++.||..++..|..+...+|...+     ...+++.+.++.+|.+..||.++..++..++..+
T Consensus       137 --~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          137 --ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             --SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             --HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence              234556666777888999999999999999988876533     3456777888899999999999999999999999


Q ss_pred             ChH
Q 039154          157 PDI  159 (211)
Q Consensus       157 ~~~  159 (211)
                      |+.
T Consensus       215 G~~  217 (278)
T 4ffb_C          215 GNN  217 (278)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            864

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.31  E-value=7.4e-06  Score=64.29  Aligned_cols=192  Identities=16%  Similarity=0.174  Sum_probs=149.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-ccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGE---ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-GVEHA   84 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~---~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~   84 (211)
                      -+..+++.|.++|..++.++...+.++-+....   ...-+.++|-+.+ +.+.++-|-.-+.+.|+.+.+.+. ++...
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            477888999999999999999999999887532   1344677788888 889999999999999999887543 23445


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHH
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTE  163 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~  163 (211)
                      ..+...+..+.+..++-.|++|++.++.+ +...   ...-+..++.++.++..-+++.++...+-+++..-+.. ..+.
T Consensus       114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~  189 (265)
T 3b2a_A          114 LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTL  189 (265)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGG
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHH
Confidence            56778889999988999999999999998 3322   23456666777778888899999999998888776654 4566


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHH
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS  205 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp  205 (211)
                      ++.-.-.+++.+++.++.-|...+..+...==++++...+.-
T Consensus       190 I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~  231 (265)
T 3b2a_A          190 ILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK  231 (265)
T ss_dssp             TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence            666677888999999999999999988876334555554443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.29  E-value=1.5e-05  Score=69.14  Aligned_cols=186  Identities=15%  Similarity=0.134  Sum_probs=126.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCcchh------hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-----cccc
Q 039154           21 DDIQLRLNSIRRLSTIARALGEERTP------KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-----HVLL   88 (211)
Q Consensus        21 ~~~~~R~~a~~~l~~ia~~lg~~~~~------~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-----~~ll   88 (211)
                      +++..+..|+..|..++  .+.+..+      ...+|.+.+ +..++++|+..++..|.+++..- .+...     .-.+
T Consensus       212 ~~~~l~~~Aa~aL~nLa--~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~k~~I~~~GaI  288 (458)
T 3nmz_A          212 YSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSV  288 (458)
T ss_dssp             HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC-CHHHHHHHHHTTHH
T ss_pred             CCHHHHHHHHHHHHHHh--CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CHHHHHHHHHcCCH
Confidence            34667888888888887  3443222      234788888 88889999999999999987521 11222     2346


Q ss_pred             hHHhhh-ccchhhHHHHHHHHHHHHHHhhcCh--hHH--HHhhHHHHHHhhcCCCc----hHHHhHHhHHHhhccC--CC
Q 039154           89 PPLETL-CTVEETCMRDKAVESLCRIGSQMRE--SDL--VDWFIPLVKRLAAGEWF----TARVSACGLFHIAYPS--AP  157 (211)
Q Consensus        89 p~l~~l-~~d~~~~VR~~a~~~l~~l~~~l~~--~~~--~~~l~p~i~~l~~d~~~----~vR~~~a~~l~~l~~~--~~  157 (211)
                      |.|..+ ....+..+++.|+.+|..++...+.  ..+  ..-.+|.+.++..+..-    .++..++..+..++..  -+
T Consensus       289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~  368 (458)
T 3nmz_A          289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN  368 (458)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence            777775 5666788999999999998874322  222  34467888777665432    5888888888887652  22


Q ss_pred             hHH-----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hhHHHHHHHHHhh
Q 039154          158 DIL-----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HLKTDIMSIFEDL  210 (211)
Q Consensus       158 ~~~-----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~~~L  210 (211)
                      .+.     ....+|.++.++++.+..|++.|+..|.+++.. +++    .+..-.+|.+.+|
T Consensus       369 ~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~L  429 (458)
T 3nmz_A          369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL  429 (458)
T ss_dssp             HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence            332     234689999999999999999999999999842 222    2223356666554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.28  E-value=7.9e-06  Score=76.73  Aligned_cols=175  Identities=7%  Similarity=-0.030  Sum_probs=120.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC------CChHHHHHHHHHHHhccccccC-cccc-cc-----
Q 039154           20 NDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN------DDDDEVLLAMAEELGVFIPYVG-GVEH-AH-----   85 (211)
Q Consensus        20 s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~------D~~~~VR~~~a~~L~~l~~~ig-~~~~-~~-----   85 (211)
                      ++..+.|..|..-+..++...| +..-..+++++.+ +.      +.++..|.++.-.++.++.... .+.. ..     
T Consensus       372 ~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~  450 (960)
T 1wa5_C          372 SDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL  450 (960)
T ss_dssp             ----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred             ccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence            3345789999999999999998 5555677788766 44      5678899999999999876321 1100 10     


Q ss_pred             ccchHHh----hhccch---hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC--
Q 039154           86 VLLPPLE----TLCTVE---ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA--  156 (211)
Q Consensus        86 ~llp~l~----~l~~d~---~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~--  156 (211)
                      .+.+.+.    ..+.|.   ++.||..|+..++++++.+.++ ....++|.+.+...|++.+||.++|..+..++...  
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~  529 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence            2323222    223555   7899999999999999998654 45667777777778888999999999999988742  


Q ss_pred             --------ChH----HHHHHHHHHHHhcCCCC---HH--HHHHHHHhhHHHHhhhCc
Q 039154          157 --------PDI----LKTELRSIYTQLCQDDM---PM--VRRSAASNLRKFAATVEP  196 (211)
Q Consensus       157 --------~~~----~~~~l~~~~~~L~~D~~---~~--VR~aaa~~l~~~~~~~~~  196 (211)
                              ..+    +...+++.++.+++...   +.  ....+...+..++..++.
T Consensus       530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~  586 (960)
T 1wa5_C          530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED  586 (960)
T ss_dssp             SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred             cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH
Confidence                    222    56777777777776641   11  345777888888877764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.22  E-value=1.7e-05  Score=74.13  Aligned_cols=169  Identities=9%  Similarity=0.027  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c----CCChHHHHHHHHHHHhccccccCccc--cccccchHHhhhccc
Q 039154           25 LRLNSIRRLSTIARALGEERTPKELIPFLSA-N----NDDDDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLETLCTV   97 (211)
Q Consensus        25 ~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~----~D~~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~l~~d   97 (211)
                      .|..+..-+..++..+|. .+-..+.+++.+ +    .+.++..|.++.-.++.+++.+....  ....+++.+..+.. 
T Consensus       423 ~r~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-  500 (963)
T 2x19_B          423 YRVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-  500 (963)
T ss_dssp             HHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-
T ss_pred             HHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-
Confidence            367777788888888883 445666677666 5    56789999999999999998665422  22334555555554 


Q ss_pred             hhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcC
Q 039154           98 EETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ  173 (211)
Q Consensus        98 ~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~  173 (211)
                      +++.||..++..++.+++.+... ..-..+++.+.+..++  .+||..+|..|..++..++..   +.+.++..+.++++
T Consensus       501 ~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~  578 (963)
T 2x19_B          501 SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM  578 (963)
T ss_dssp             CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            46779999999999999876532 3445667776665555  689999999999998877665   56777777777766


Q ss_pred             C--CCHHHHHHHHHhhHHHHhhhCch
Q 039154          174 D--DMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       174 D--~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      .  -...+|..+..+++.++...+++
T Consensus       579 ~~~~~~~~~~~~~eai~~i~~~~~~~  604 (963)
T 2x19_B          579 KQIHKTSQCMWLMQALGFLLSALQVE  604 (963)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             cCCCChHHHHHHHHHHHHHHhcCCHH
Confidence            3  46899999999999999887743

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.21  E-value=1.9e-05  Score=68.28  Aligned_cols=176  Identities=13%  Similarity=0.040  Sum_probs=122.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh-----hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP-----KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      -|..++..|+|+++..|..|+..|..++.  +.+..+     ...+|.+.+ +..++++++..++..|.+++.  +.++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~--~~~~~   78 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTN   78 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHH
Confidence            36778899999999999999999999873  443333     445688888 888999999999999999986  22233


Q ss_pred             cc-----ccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcCh-hHHHHhhHHHHHHhh--------cCC--------Cch
Q 039154           84 AH-----VLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRE-SDLVDWFIPLVKRLA--------AGE--------WFT  140 (211)
Q Consensus        84 ~~-----~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~-~~~~~~l~p~i~~l~--------~d~--------~~~  140 (211)
                      ..     -.+|.|..+++ ..+..+|+.|+.+|..++..-.. ..+.+-.+|.+.++.        .++        +..
T Consensus        79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence            32     34788889888 77889999999999999976221 212226777777776        233        234


Q ss_pred             HHHhHHhHHHhhccCCChHHHH------HHHHHHHHhcCC------CCHHHHHHHHHhhHHHH
Q 039154          141 ARVSACGLFHIAYPSAPDILKT------ELRSIYTQLCQD------DMPMVRRSAASNLRKFA  191 (211)
Q Consensus       141 vR~~~a~~l~~l~~~~~~~~~~------~l~~~~~~L~~D------~~~~VR~aaa~~l~~~~  191 (211)
                      +...++..+..++..  ++.+.      ..+|.+..++++      .+..++..++..|.+++
T Consensus       159 v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs  219 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS  219 (457)
T ss_dssp             HHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence            556888889888875  33221      567777777763      33445555555555553

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.20  E-value=4.5e-05  Score=69.63  Aligned_cols=181  Identities=15%  Similarity=0.124  Sum_probs=125.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhch-----hhhhhh-cCCChH---HHHHHHHHHHhcccccc--
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKEL-----IPFLSA-NNDDDD---EVLLAMAEELGVFIPYV--   78 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L-----~p~l~~-~~D~~~---~VR~~~a~~L~~l~~~i--   78 (211)
                      -+..|...++|+++..|..+++.|..++..   ...|..+     +|.+.+ +....+   .+|..++.+|..+.-..  
T Consensus       458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d---~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np  534 (778)
T 3opb_A          458 LISFLKREMHNLSPNCKQQVVRIIYNITRS---KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP  534 (778)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHHTS---GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence            356678889999999999999999999733   3333333     355555 444433   38999999998877432  


Q ss_pred             ----CccccccccchHHhhhccc-hhh-------------HHHHHHHHHHHHHHhhcCh--h-----HHH-HhhHHHHHH
Q 039154           79 ----GGVEHAHVLLPPLETLCTV-EET-------------CMRDKAVESLCRIGSQMRE--S-----DLV-DWFIPLVKR  132 (211)
Q Consensus        79 ----g~~~~~~~llp~l~~l~~d-~~~-------------~VR~~a~~~l~~l~~~l~~--~-----~~~-~~l~p~i~~  132 (211)
                          ++... ...+|.|.+|+.. .+.             .-+..|+.+|.+++..-+.  +     .+. .-.+|.+..
T Consensus       535 ~~~f~~~~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~  613 (778)
T 3opb_A          535 GLIFKKYSA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN  613 (778)
T ss_dssp             HHHSSSSCS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HHHcCCCcc-ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence                22111 2456777787772 221             1277899999999886532  1     223 247899999


Q ss_pred             hhcCCCchHHHhHHhHHHhhccCCC---hHH------H-HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          133 LAAGEWFTARVSACGLFHIAYPSAP---DIL------K-TELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       133 l~~d~~~~vR~~~a~~l~~l~~~~~---~~~------~-~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      +..+++..+|.+++.++..++..-.   ..+      . ..=+++++.|++.++..+|++|+..|..+....
T Consensus       614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~  685 (778)
T 3opb_A          614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI  685 (778)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999988865322   121      0 112678899999999999999999998885433

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.18  E-value=4.8e-06  Score=78.06  Aligned_cols=139  Identities=4%  Similarity=-0.032  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhccccccCccccccccchHHhhhccc-----hhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhh
Q 039154           62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-----EETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLA  134 (211)
Q Consensus        62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d-----~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~  134 (211)
                      ..|+++++.+..++..+| +.....+++.+...+..     .+|..|++|+.++..+++.+..+.  .-..+++.+..+.
T Consensus       436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~  514 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP  514 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence            478899999998888776 55666777777666554     578899999999999998887643  2234566666665


Q ss_pred             c-CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154          135 A-GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED  209 (211)
Q Consensus       135 ~-d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~  209 (211)
                      . |+...||..++..++.++..++..  +...+++.+++.+ |  +.|+..|+..+..+++.++.     .+.|++..
T Consensus       515 ~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~-----~l~p~~~~  584 (971)
T 2x1g_F          515 YEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL-----QLKPYADP  584 (971)
T ss_dssp             TTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH-----HHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH-----hccccHHH
Confidence            3 567889999999999988776643  5667777777777 5  88999999999999976543     45555543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.16  E-value=1.2e-05  Score=75.39  Aligned_cols=172  Identities=13%  Similarity=0.011  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCC-----ChHHHHHHHHHHHhccccccCccc--cccccchHHhhhc
Q 039154           24 QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NND-----DDDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLETLC   95 (211)
Q Consensus        24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D-----~~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~l~   95 (211)
                      ..|..+...+..++..+| +.+-..+.+++.+ +..     .++..|.++.-.++.+++.+....  ....+++.+..+.
T Consensus       436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~  514 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP  514 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence            457777788888888887 5555677777766 433     577889999999999988655322  2233455555555


Q ss_pred             c-chhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHH
Q 039154           96 T-VEETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQ  170 (211)
Q Consensus        96 ~-d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~  170 (211)
                      . |.++.||..++..++.+++.+... ..-..++|.+.+.. |  .+|+..+|..+..+++.++..   +.+.++..+.+
T Consensus       515 ~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~  591 (971)
T 2x1g_F          515 YEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA  591 (971)
T ss_dssp             TTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            3 557899999999999999988743 23344556555444 3  689999999999999887765   55667777777


Q ss_pred             hcCC--CCHHHHHHHHHhhHHHHhhhCchhh
Q 039154          171 LCQD--DMPMVRRSAASNLRKFAATVEPAHL  199 (211)
Q Consensus       171 L~~D--~~~~VR~aaa~~l~~~~~~~~~~~~  199 (211)
                      +++.  -...+|..+.++++.++..++++..
T Consensus       592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~  622 (971)
T 2x1g_F          592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI  622 (971)
T ss_dssp             HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred             HHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence            7776  4589999999999999998875433

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.16  E-value=9e-05  Score=69.52  Aligned_cols=195  Identities=13%  Similarity=0.158  Sum_probs=148.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-hhhc---hhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-TPKE---LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH   85 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~---L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~   85 (211)
                      ++.+++.+++....  ..|+..+..++...|... ..-.   ++|.+.. +.|....||.++..+...+++.+.+... .
T Consensus        56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~  132 (986)
T 2iw3_A           56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-K  132 (986)
T ss_dssp             HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-H
T ss_pred             HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-H
Confidence            55666666665444  778899999997776632 2222   3466667 7899999999999999999998887665 6


Q ss_pred             ccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--
Q 039154           86 VLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (211)
Q Consensus        86 ~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--  159 (211)
                      .++|.+...++.. .|..+..|.+.+..+++.. ++.+.   ..++|.+.....|-...|..++-..+.++|..+++.  
T Consensus       133 ~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~  211 (986)
T 2iw3_A          133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI  211 (986)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence            7778776666655 5999999999999999987 45443   458899999989988888888888877777766631  


Q ss_pred             ------------------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hh
Q 039154          160 ------------------------------------LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HL  199 (211)
Q Consensus       160 ------------------------------------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~  199 (211)
                                                          ...-+.|++.+-+++++-.+++-++--+.++++.++-.    -+
T Consensus       212 ~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f  291 (986)
T 2iw3_A          212 ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF  291 (986)
T ss_dssp             GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh
Confidence                                                23457899999999999999999999999999998643    44


Q ss_pred             HHHHHHHHHh
Q 039154          200 KTDIMSIFED  209 (211)
Q Consensus       200 ~~~llp~~~~  209 (211)
                      ..+|+|-+++
T Consensus       292 ~~~l~p~~~~  301 (986)
T 2iw3_A          292 LGKLLPGLKS  301 (986)
T ss_dssp             HTTTHHHHHH
T ss_pred             hhhhhhHHHH
Confidence            4556666654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.09  E-value=0.00013  Score=63.07  Aligned_cols=104  Identities=15%  Similarity=0.048  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhch-----hhhhhh-cC-CChHHHHHHHHHHHhccccccCc-cc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKEL-----IPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG-VE   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L-----~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~-~~   82 (211)
                      +..|++.|+++++..+..|+..|..++.  +.+..+..+     +|.+.+ +. ..+++++..++..|.+++..-.. ..
T Consensus        46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~--~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~  123 (457)
T 1xm9_A           46 ICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE  123 (457)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence            6788899999999999999999999985  323333333     688888 76 77899999999999999874110 10


Q ss_pred             cccccchHHhhhcc--------ch--------hhHHHHHHHHHHHHHHhh
Q 039154           83 HAHVLLPPLETLCT--------VE--------ETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        83 ~~~~llp~l~~l~~--------d~--------~~~VR~~a~~~l~~l~~~  116 (211)
                      ..+-.+|.|..++.        +.        +..|+..|+.+|..++..
T Consensus       124 i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~  173 (457)
T 1xm9_A          124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred             HHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence            11245677777772        22        234555777777777654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=98.02  E-value=6.9e-06  Score=72.05  Aligned_cols=160  Identities=17%  Similarity=0.150  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhH
Q 039154           23 IQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC  101 (211)
Q Consensus        23 ~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~  101 (211)
                      --+|..|++.|+.+ ..++++   -.++-.+.. .....++||....--|..+.+.+..   ...++|.+...++|.++.
T Consensus       242 APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDD  314 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDED  314 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHH
T ss_pred             eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccH
Confidence            35799999999999 888877   233333334 6778899999988888877554432   566778888888999999


Q ss_pred             HHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHH
Q 039154          102 MRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVR  180 (211)
Q Consensus       102 VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR  180 (211)
                      ||..|+.+|..++..-.-+.+-+.+...+..+  |+--..-.++-.++.+++..-... ....++|.+..++..+...||
T Consensus       315 VRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L--DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          315 IKLLSAELLCHFPITDSLDLVLEKCWKNIESE--ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC--CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             HHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh--cccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHH
Confidence            99999999999983223345556677777766  333333334444444443321111 123788889999999999999


Q ss_pred             HHHHHhhHHHH
Q 039154          181 RSAASNLRKFA  191 (211)
Q Consensus       181 ~aaa~~l~~~~  191 (211)
                      +++.+.+..+.
T Consensus       393 ~AVL~TL~tfL  403 (800)
T 3oc3_A          393 TSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHTTTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999886654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.00  E-value=9.9e-06  Score=76.80  Aligned_cols=135  Identities=9%  Similarity=-0.028  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHhccccccCccccccccchHHhhhccc--hhhHHHHHHHHHHHHHHhhcChhH---HHHhhHHHHHHhhc-
Q 039154           62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV--EETCMRDKAVESLCRIGSQMRESD---LVDWFIPLVKRLAA-  135 (211)
Q Consensus        62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i~~l~~-  135 (211)
                      ..|+++++.|..++. +++......+++.+.+.++.  .+|..|++|+.+++.+++.++...   ....+++.+..+++ 
T Consensus       428 ~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~  506 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK  506 (1049)
T ss_dssp             HHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh
Confidence            468888889988885 55666777888888777753  578999999999999998877652   24556777777654 


Q ss_pred             ----CCCchHHHhHHhHHHhhccCCCh--HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          136 ----GEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       136 ----d~~~~vR~~~a~~l~~l~~~~~~--~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                          |+...+|..++..++.++..+..  ++...+++.++..+.|+.+.||..|+.++..++..++..
T Consensus       507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~  574 (1049)
T 3m1i_C          507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH  574 (1049)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                34556776788888877654433  366778888888999999999999999999999987653

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.98  E-value=0.00011  Score=61.57  Aligned_cols=170  Identities=12%  Similarity=0.062  Sum_probs=112.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHh
Q 039154           14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE   92 (211)
Q Consensus        14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~   92 (211)
                      .++.+.|+|...|...--.+..+++.  ++... ...+.+.+ ++|.++.+|..+...|+.+..    ++..+.+.+.+.
T Consensus        73 v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk  145 (355)
T 3tjz_B           73 MTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMK  145 (355)
T ss_dssp             HHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHH
Confidence            35688899999988776666666554  33332 55577777 999999999999999999654    667889999999


Q ss_pred             hhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---------------
Q 039154           93 TLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---------------  157 (211)
Q Consensus        93 ~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~---------------  157 (211)
                      +.+.|.++.||.+|+-+..++...- ++.++ .+++-+..+..|++..|-+++...+..+...-+               
T Consensus       146 ~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l  223 (355)
T 3tjz_B          146 QAIVDKVPSVSSSALVSSLHLLKCS-FDVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGL  223 (355)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHTTTC-HHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHhccC-HHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCC
Confidence            9999999999999999999988664 44443 466777777777776555555444444432110               


Q ss_pred             -----------------h----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          158 -----------------D----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       158 -----------------~----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                                       .    +....+.+.+...++...+.|--.|++.+-.+-.
T Consensus       224 ~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          224 KSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG  279 (355)
T ss_dssp             SCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred             cChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence                             0    0123455555666666667777777766655433

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.97  E-value=4.4e-05  Score=69.71  Aligned_cols=183  Identities=15%  Similarity=0.111  Sum_probs=126.5

Q ss_pred             HHHHHHHhcCCCHH---HHHHHHHHHHHHHHHh------CCcchhhchhhhhhh-cCC-Ch------------H-HHHHH
Q 039154           11 IAVLTDELKNDDIQ---LRLNSIRRLSTIARAL------GEERTPKELIPFLSA-NND-DD------------D-EVLLA   66 (211)
Q Consensus        11 l~~l~~~l~s~~~~---~R~~a~~~l~~ia~~l------g~~~~~~~L~p~l~~-~~D-~~------------~-~VR~~   66 (211)
                      +..++..+.+....   .|..|++.|..++..-      |.... ...+|.+.+ +.. ..            + .-+..
T Consensus       500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe  578 (778)
T 3opb_A          500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE  578 (778)
T ss_dssp             HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc-ccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence            56678888777654   7889999998887322      21111 245555555 441 11            1 23778


Q ss_pred             HHHHHhccccccCc--cc----ccc--ccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hHHHH-------hhHHH
Q 039154           67 MAEELGVFIPYVGG--VE----HAH--VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SDLVD-------WFIPL  129 (211)
Q Consensus        67 ~a~~L~~l~~~ig~--~~----~~~--~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~~-------~l~p~  129 (211)
                      ++.+|.+++..=+.  ++    ...  ..+|.+.+++.+++..||.+|++.+..+...-..  ..+.+       .=++.
T Consensus       579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l  658 (778)
T 3opb_A          579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI  658 (778)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH
Confidence            88999999884311  11    222  3678999999999999999999999999863221  12211       12677


Q ss_pred             HHHhhcCCCchHHHhHHhHHHhhccCCCh---H-H-HHHHHHHHHHhcCC--CCHHHHHHHHHhhHHHHhhh
Q 039154          130 VKRLAAGEWFTARVSACGLFHIAYPSAPD---I-L-KTELRSIYTQLCQD--DMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~---~-~-~~~l~~~~~~L~~D--~~~~VR~aaa~~l~~~~~~~  194 (211)
                      +..|+..+...+|.+++..+..+....+.   . . ....++.++.+|+|  ++.++|.-++..+.+++...
T Consensus       659 LV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          659 LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            88899999999999999888887543332   1 2 24688899999999  89999999999999999843

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.96  E-value=0.0006  Score=63.67  Aligned_cols=175  Identities=10%  Similarity=0.040  Sum_probs=116.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc-cccccccchHHhhhc
Q 039154           19 KNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG-VEHAHVLLPPLETLC   95 (211)
Q Consensus        19 ~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~-~~~~~~llp~l~~l~   95 (211)
                      .+.+...|..++..++.++..+..+.  .-..+++.+.++.++++.||.+++..++.+.+.++. ......+++.+...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l  538 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL  538 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence            56788889999999999987766532  223456666565557889999999999999987653 244556666666666


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcC--CCchHHHhHHhHHHhhccCCC-hH---HHHHHHHH
Q 039154           96 TVEETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAG--EWFTARVSACGLFHIAYPSAP-DI---LKTELRSI  167 (211)
Q Consensus        96 ~d~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d--~~~~vR~~~a~~l~~l~~~~~-~~---~~~~l~~~  167 (211)
                      .+  +.||..|+.++.++++..+..-  ....++..+..+...  -....|..+.+.++.++...+ .+   +...+++.
T Consensus       539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~  616 (963)
T 2x19_B          539 GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISP  616 (963)
T ss_dssp             TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            55  7899999999999998765431  123344444444443  245788888899999888776 32   33444444


Q ss_pred             HHHhc----C-CCCHHHHH---HHHHhhHHHHhhhC
Q 039154          168 YTQLC----Q-DDMPMVRR---SAASNLRKFAATVE  195 (211)
Q Consensus       168 ~~~L~----~-D~~~~VR~---aaa~~l~~~~~~~~  195 (211)
                      +...+    + +.++..|.   .+...++.+++.++
T Consensus       617 l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~  652 (963)
T 2x19_B          617 YIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD  652 (963)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            44332    2 23566665   45556667777766

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.94  E-value=0.00048  Score=60.68  Aligned_cols=150  Identities=13%  Similarity=0.003  Sum_probs=95.6

Q ss_pred             hhhhhhh-cCCChHHHHHHHHHHHhccccccCcc------cc---ccccchH-----Hhhhccchh-hHHHHHHHHHHHH
Q 039154           49 LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV------EH---AHVLLPP-----LETLCTVEE-TCMRDKAVESLCR  112 (211)
Q Consensus        49 L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~------~~---~~~llp~-----l~~l~~d~~-~~VR~~a~~~l~~  112 (211)
                      +...+.. +-|+.+|+|+.||-.|..+.+.-|..      ..   .-.++-+     |-.+.+|.- .-||+.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            4455555 66777777777777777666655421      00   0011111     112334432 4589999999999


Q ss_pred             HHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          113 IGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       113 l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      + ..++.+  .+.+..++ +....+.|.||.+.--.+--+...+..  .+.+++.++..++|++-.||..||..|-.++ 
T Consensus       255 L-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-  327 (800)
T 3oc3_A          255 I-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-  327 (800)
T ss_dssp             H-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-
T ss_pred             H-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-
Confidence            9 888877  23333333 455778899999876666555333322  5788999999999999999999999999888 


Q ss_pred             hhCchhhHHHHHHHHH
Q 039154          193 TVEPAHLKTDIMSIFE  208 (211)
Q Consensus       193 ~~~~~~~~~~llp~~~  208 (211)
                        .++.+ ..++-.+|
T Consensus       328 --~p~~l-~~LL~iLW  340 (800)
T 3oc3_A          328 --ITDSL-DLVLEKCW  340 (800)
T ss_dssp             --CSSTH-HHHHHHHH
T ss_pred             --chhhH-HHHHHHHH
Confidence              44443 34444443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.89  E-value=2.5e-05  Score=73.70  Aligned_cols=145  Identities=10%  Similarity=-0.012  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHhccccccCcccccc----ccchHHhhhc---cchhhHHHHHHHHHHHHHHhhcChhH--------HHHhh
Q 039154           62 EVLLAMAEELGVFIPYVGGVEHAH----VLLPPLETLC---TVEETCMRDKAVESLCRIGSQMRESD--------LVDWF  126 (211)
Q Consensus        62 ~VR~~~a~~L~~l~~~ig~~~~~~----~llp~l~~l~---~d~~~~VR~~a~~~l~~l~~~l~~~~--------~~~~l  126 (211)
                      +.|+.++ .+-+....+|++...+    .+.+.+.+.+   ...+|..+++|+.++..+++.+....        ....+
T Consensus       413 e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l  491 (980)
T 3ibv_A          413 EMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL  491 (980)
T ss_dssp             HHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred             HHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence            4888888 7777777789888777    7777776655   34579999999999999999876422        22357


Q ss_pred             HHHHHHhhc-----CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHH--hcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          127 IPLVKRLAA-----GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQ--LCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       127 ~p~i~~l~~-----d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~--L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      ++++.++.+     ++...||..++..++..+.-+...  +...+++.|+.  .+.|+.+.||.+|+..+..+++.+.+.
T Consensus       492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~  571 (980)
T 3ibv_A          492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ  571 (980)
T ss_dssp             HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence            788888755     788899999999999988877544  67788888888  888999999999999999999998864


Q ss_pred             hhHHHHHHHHH
Q 039154          198 HLKTDIMSIFE  208 (211)
Q Consensus       198 ~~~~~llp~~~  208 (211)
                      . ..++-+++.
T Consensus       572 L-~~~~~~il~  581 (980)
T 3ibv_A          572 V-VNYTESSLA  581 (980)
T ss_dssp             C-SSSHHHHHH
T ss_pred             h-hhHHHHHHH
Confidence            2 234444443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.71  E-value=0.00051  Score=61.20  Aligned_cols=143  Identities=13%  Similarity=0.029  Sum_probs=105.9

Q ss_pred             hhhhhh-cC-CChHHHHHHHHHHHhccccccCc--cc-----cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-
Q 039154           50 IPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG--VE-----HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-  119 (211)
Q Consensus        50 ~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~--~~-----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-  119 (211)
                      ++.+.. ++ ..++.++..++.+|.+++.--+.  ..     .....+|.|..|+...+..|+..|+.+|..++..-.. 
T Consensus       310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~  389 (584)
T 3l6x_A          310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK  389 (584)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH
Confidence            344444 43 35799999999999998651110  11     1235589999999999999999999999999876433 


Q ss_pred             hHHHHhhHHHHHHhhcCC--------CchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 039154          120 SDLVDWFIPLVKRLAAGE--------WFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDD--MPMVRRSAAS  185 (211)
Q Consensus       120 ~~~~~~l~p~i~~l~~d~--------~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~--~~~VR~aaa~  185 (211)
                      +.+....+|.+.++..+.        +..++..+|..++.+...-...    .....+|.+.+|+++.  .+.++++|+.
T Consensus       390 ~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~  469 (584)
T 3l6x_A          390 ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL  469 (584)
T ss_dssp             HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence            455667888888877665        3467888888888776442222    2446789999999986  8999999999


Q ss_pred             hhHHHHh
Q 039154          186 NLRKFAA  192 (211)
Q Consensus       186 ~l~~~~~  192 (211)
                      .|..+..
T Consensus       470 vL~nl~~  476 (584)
T 3l6x_A          470 VLQTIWG  476 (584)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.67  E-value=0.00044  Score=65.49  Aligned_cols=172  Identities=9%  Similarity=0.006  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC--CChHHHHHHHHHHHhccccccCccc---cccccchHHhhhcc-
Q 039154           24 QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN--DDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETLCT-   96 (211)
Q Consensus        24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~--D~~~~VR~~~a~~L~~l~~~ig~~~---~~~~llp~l~~l~~-   96 (211)
                      +.|..+...|..++ .+++..+-..+.+.+.+ +.  ..++..|.++.-.+|.+++.+++..   ....+++.+..+.. 
T Consensus       428 ~~~~~~~~~L~~l~-~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~  506 (1049)
T 3m1i_C          428 QLYKSEREVLVYLT-HLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK  506 (1049)
T ss_dssp             HHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh
Confidence            45666667777776 45555666777777777 43  4678899999999999987666542   13444555555443 


Q ss_pred             ----chhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----------H
Q 039154           97 ----VEETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----------L  160 (211)
Q Consensus        97 ----d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----------~  160 (211)
                          |+.+.||..++..++++++-+... ..-..+++.+....+|++.+||..||..|..++...+..           +
T Consensus       507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~  586 (1049)
T 3m1i_C          507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF  586 (1049)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH
Confidence                456777777888888887765442 334556676666778888999999999999998876543           3


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154          161 KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP  196 (211)
Q Consensus       161 ~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~  196 (211)
                      .+.++..+..+.++-...-+..+.++++.++...+.
T Consensus       587 ~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~  622 (1049)
T 3m1i_C          587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1049)
T ss_dssp             HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence            566777777778887777788899999999988874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.53  E-value=0.0057  Score=48.04  Aligned_cols=170  Identities=11%  Similarity=0.023  Sum_probs=128.6

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---ccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAH   85 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~~   85 (211)
                      -...+.+.++|=+...-.+.++         +.    ++-+-.+.+ +.|+++.|+..+-..++.+.+-..+   ....+
T Consensus         8 ~~~~lre~L~sWkiK~a~ela~---------~~----e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e   74 (265)
T 3b2a_A            8 SKTELRELVLSWQILDAVSLAL---------ED----KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE   74 (265)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH---------HC----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhHHHHHHHHH---------hc----hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            3556666666655433322211         11    224555666 7899999999999999988875322   23456


Q ss_pred             ccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH
Q 039154           86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL  164 (211)
Q Consensus        86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l  164 (211)
                      .++|-+..++.++++.|-..|++++..+.+..+.. .....+...+..+.++++--.|..+++.++.+ +....  ...+
T Consensus        75 ~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~--~~~V  151 (265)
T 3b2a_A           75 RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLED--SKLV  151 (265)
T ss_dssp             HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC--CHHH
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc--hHHH
Confidence            78899999999999999999999999999987653 44566777788888888888999999999999 33322  3578


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          165 RSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      .....+|+...++.|+.++...+-+++..-+
T Consensus       152 ~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            8888899999999999999999999988654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.52  E-value=0.003  Score=47.98  Aligned_cols=174  Identities=15%  Similarity=0.136  Sum_probs=114.7

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      +..++--+ ||+...--++..+.++.+|+. .|+. ...++|.+.. ..-.++..|..++-.|+.++..-  +.....+.
T Consensus        71 ~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~-v~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~~~v~  146 (253)
T 2db0_A           71 LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL-VKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLMASIV  146 (253)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHHHHHH
T ss_pred             HHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHHHHHH
Confidence            44455443 466666666677777777643 3444 3567788777 65568888888888888887732  23344455


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      --+..++++.+..=|..|.+=+..++..- .+. -.=.+|.+..|..|...-||.++.+.+..++..-++ .++-+... 
T Consensus       147 rdi~smltskd~~Dkl~aLnFi~alGen~-~~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~k-  222 (253)
T 2db0_A          147 RDFMSMLSSKNREDKLTALNFIEAMGENS-FKY-VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKR-  222 (253)
T ss_dssp             HHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HHH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHH-
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhccC-ccc-cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHH-
Confidence            55566667777666777776666666552 222 233567777788888888888888888888776555 44444444 


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      +.=++|++..|.+..-..|+.+.-
T Consensus       223 l~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          223 LEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHH
Confidence            555688888888888888887764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.52  E-value=0.00081  Score=59.91  Aligned_cols=150  Identities=14%  Similarity=-0.044  Sum_probs=105.8

Q ss_pred             CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----ccccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154           41 GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----AHVLLPPLETLCTVEETCMRDKAVESLCRIG  114 (211)
Q Consensus        41 g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~  114 (211)
                      +...++..-+|.+.+ +...+++++..++..|.+++.  +.+..     ..-.+|.|..+++..+..||+.|+.+|..|+
T Consensus        41 ~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~--~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa  118 (584)
T 3l6x_A           41 PPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCY--RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS  118 (584)
T ss_dssp             CCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred             CCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            345677778888888 888889999999999988874  22222     2234689999999999999999999999998


Q ss_pred             hhcCh---hH-HHHhhHHHHHHhhcC-CCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhc---------------
Q 039154          115 SQMRE---SD-LVDWFIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLC---------------  172 (211)
Q Consensus       115 ~~l~~---~~-~~~~l~p~i~~l~~d-~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~---------------  172 (211)
                      ..-+.   .. ...-.+|.+.++..+ ....++..++..+-.++..-...  ....-+|.+++++               
T Consensus       119 ~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~  198 (584)
T 3l6x_A          119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC  198 (584)
T ss_dssp             SSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC-------
T ss_pred             ccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccc
Confidence            63222   22 223356666666664 56788888888888887632111  2234567777765               


Q ss_pred             ---CCCCHHHHHHHHHhhHHHHh
Q 039154          173 ---QDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       173 ---~D~~~~VR~aaa~~l~~~~~  192 (211)
                         .-++..|+..|+..|.+++.
T Consensus       199 k~~~~~d~~V~~nAa~~L~NLs~  221 (584)
T 3l6x_A          199 KPRHIEWESVLTNTAGCLRNVSS  221 (584)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHTS
T ss_pred             cccccccHHHHHHHHHHHHHHhc
Confidence               12357999999999888875

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.49  E-value=0.0014  Score=56.54  Aligned_cols=190  Identities=12%  Similarity=0.125  Sum_probs=101.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      ++.+++..+++|.++|..|++.|+.+++.    .....+.-.+.+ ++-+++..+..+-++|-.+.+ ..   -...+-.
T Consensus        67 i~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-~D---pk~tl~~  138 (507)
T 3u0r_A           67 INAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFK-MD---AKGTLGG  138 (507)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HC---HHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHh-cC---hHHHHHH
Confidence            67778888888888888888888877755    224555566666 665665555555555555444 11   1223333


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHHHhhcCCCc--------------------------
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVKRLAAGEWF--------------------------  139 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~~l~~d~~~--------------------------  139 (211)
                      ++.++.+. ++.||+.+++=+..-...++.    ++.++++...+++..+|.+-                          
T Consensus       139 lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv  217 (507)
T 3u0r_A          139 LFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLV  217 (507)
T ss_dssp             HHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHH
T ss_pred             HHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHH
Confidence            44444443 356777766655544444333    22333333333333332211                          


Q ss_pred             ----------------------hHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHH
Q 039154          140 ----------------------TARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       140 ----------------------~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~  191 (211)
                                            +...++-..++-+....+..     +-++++|.+-.+-. ++....+--..+.+.+++
T Consensus       218 ~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s  297 (507)
T 3u0r_A          218 ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMS  297 (507)
T ss_dssp             HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHc
Confidence                                  12222233344444444443     23445554444333 223346888999999999


Q ss_pred             hhhC-chhhHHHHHHHHHh
Q 039154          192 ATVE-PAHLKTDIMSIFED  209 (211)
Q Consensus       192 ~~~~-~~~~~~~llp~~~~  209 (211)
                      ...| .+...+.+-++|+.
T Consensus       298 ~~~~~~e~a~~~l~~iy~~  316 (507)
T 3u0r_A          298 SFCGDMEKLETNLRKLFDK  316 (507)
T ss_dssp             TTCCCCTTHHHHHHHHHHH
T ss_pred             cCCCccchHHHHHHHHHHH
Confidence            9999 45555555555544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.45  E-value=0.001  Score=63.11  Aligned_cols=170  Identities=8%  Similarity=0.006  Sum_probs=122.5

Q ss_pred             HHHHHHHHHhCCcchhhchhhhhhh-cCC--ChHHHHHHHHHHHhccccccCcc---ccccccchHHhhhcc-----chh
Q 039154           31 RRLSTIARALGEERTPKELIPFLSA-NND--DDDEVLLAMAEELGVFIPYVGGV---EHAHVLLPPLETLCT-----VEE   99 (211)
Q Consensus        31 ~~l~~ia~~lg~~~~~~~L~p~l~~-~~D--~~~~VR~~~a~~L~~l~~~ig~~---~~~~~llp~l~~l~~-----d~~   99 (211)
                      .-|..++...| ..+...+++.+.+ +..  .++..|.+++-++|.+++.+.++   .....++|.|..+++     |+.
T Consensus       435 d~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k  513 (1023)
T 4hat_C          435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK  513 (1023)
T ss_dssp             HHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence            33444444444 4677778888876 443  67999999999999999866543   233456677777776     466


Q ss_pred             hHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----------HHHHHHHH
Q 039154          100 TCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----------LKTELRSI  167 (211)
Q Consensus       100 ~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----------~~~~l~~~  167 (211)
                      ..||..++..++++++-+... ..-..+++.+.+...|+..+|..+||..|..++..++..           +...++..
T Consensus       514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~  593 (1023)
T 4hat_C          514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD  593 (1023)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence            778888999999988876432 223334444444556777889999999999998876643           45667777


Q ss_pred             HHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH
Q 039154          168 YTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT  201 (211)
Q Consensus       168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~  201 (211)
                      +.+...+-.+.-+..+..+++.+++..+.+....
T Consensus       594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~  627 (1023)
T 4hat_C          594 IQKTTADLQPQQVHTFYKACGIIISEERSVAERN  627 (1023)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHH
Confidence            7787778889999999999999999998765333

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.39  E-value=0.00033  Score=66.38  Aligned_cols=129  Identities=9%  Similarity=-0.028  Sum_probs=100.7

Q ss_pred             HHHhccccccCccccccccchHHhhhccc--hhhHHHHHHHHHHHHHHhhcChhH---HHHhhHHHHHHhhc-----CCC
Q 039154           69 EELGVFIPYVGGVEHAHVLLPPLETLCTV--EETCMRDKAVESLCRIGSQMRESD---LVDWFIPLVKRLAA-----GEW  138 (211)
Q Consensus        69 ~~L~~l~~~ig~~~~~~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i~~l~~-----d~~  138 (211)
                      +.|..+.. +++.+..+.+++.+.+.+..  .+|..|++++-+++.+++....+.   .-..++|.+.++.+     |+.
T Consensus       435 d~L~~l~~-l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k  513 (1023)
T 4hat_C          435 EVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK  513 (1023)
T ss_dssp             HHHHHHHH-HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHhc-cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence            56666555 44456777788888776654  469999999999999999988763   33567888888886     567


Q ss_pred             chHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154          139 FTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH  198 (211)
Q Consensus       139 ~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~  198 (211)
                      ..||..++..++..++-+...  +...+++.+++.+.|+.+.|..+|+.++..++..++...
T Consensus       514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l  575 (1023)
T 4hat_C          514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF  575 (1023)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            789999999999887765432  566777777888889999999999999999999887543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.37  E-value=0.00025  Score=64.36  Aligned_cols=146  Identities=12%  Similarity=0.033  Sum_probs=92.8

Q ss_pred             hhchhhhhhhcCCChHHHHHHHHHHHhccccccCccc-----cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh
Q 039154           46 PKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVE-----HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES  120 (211)
Q Consensus        46 ~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~-----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~  120 (211)
                      .+.++|++..++..++.+|..++.+|.+++.  +.+.     ....+.+++..++.|.+..||.+|+.+|..++...+.+
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            3568898877888888899999999999885  2221     12234466788889999999999999999998887776


Q ss_pred             HHHH----hhHHHHHHhhcCCC---------------------chHHHhHHhHHHhhccCCChH----HHHHHHHHHHHh
Q 039154          121 DLVD----WFIPLVKRLAAGEW---------------------FTARVSACGLFHIAYPSAPDI----LKTELRSIYTQL  171 (211)
Q Consensus       121 ~~~~----~l~p~i~~l~~d~~---------------------~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L  171 (211)
                      .+..    -++|.+..+.+...                     |.+-..++.++..++..-+..    .....++.++.+
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~  190 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR  190 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence            4432    24554444432100                     222223445555555443322    123445555555


Q ss_pred             cCC---CCHHHHHHHHHhhHHHHhh
Q 039154          172 CQD---DMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       172 ~~D---~~~~VR~aaa~~l~~~~~~  193 (211)
                      +.+   ....|+.+|++.|..+..-
T Consensus       191 L~~~~~~~~~v~~~a~~~L~~ls~d  215 (684)
T 4gmo_A          191 LISADIAPQDIYEEAISCLTTLSED  215 (684)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHhcc
Confidence            532   3368999999999887663

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.33  E-value=0.0019  Score=50.79  Aligned_cols=143  Identities=10%  Similarity=-0.060  Sum_probs=74.4

Q ss_pred             hhhhhh-cCCChH--HHHHHHHHHHhccccccCc---cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hH
Q 039154           50 IPFLSA-NNDDDD--EVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SD  121 (211)
Q Consensus        50 ~p~l~~-~~D~~~--~VR~~~a~~L~~l~~~ig~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~  121 (211)
                      +|.+.+ +..+++  +++..++..+..++..-..   .-...-.+|.|..+++.++..+|+.|+.+|..++..-+.  ..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            444444 333333  6666666666655531100   001112356677777766777777777777777653111  11


Q ss_pred             -HHHhhHHHHHHhhc-CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcC-------C---------CCHHHHH
Q 039154          122 -LVDWFIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ-------D---------DMPMVRR  181 (211)
Q Consensus       122 -~~~~l~p~i~~l~~-d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~-------D---------~~~~VR~  181 (211)
                       ...--+|.+.++.. ...+.+|..++..+-.++..-...  ....-+|.+..++.       |         .++.|+.
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence             12224555555554 456677777776666664322111  22233455555432       1         2567777


Q ss_pred             HHHHhhHHHHh
Q 039154          182 SAASNLRKFAA  192 (211)
Q Consensus       182 aaa~~l~~~~~  192 (211)
                      .++..|.+++.
T Consensus       170 na~~~L~nLss  180 (233)
T 3tt9_A          170 NVTGCLRNMSS  180 (233)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            77777777765

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.95  E-value=0.0097  Score=56.18  Aligned_cols=170  Identities=12%  Similarity=-0.014  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHhCCcchhh----chhhhhhh-cC---CChHHHHHHHHHHHhccccccCcc--------ccccccc
Q 039154           25 LRLNSIRRLSTIARALGEERTPK----ELIPFLSA-NN---DDDDEVLLAMAEELGVFIPYVGGV--------EHAHVLL   88 (211)
Q Consensus        25 ~R~~a~~~l~~ia~~lg~~~~~~----~L~p~l~~-~~---D~~~~VR~~~a~~L~~l~~~ig~~--------~~~~~ll   88 (211)
                      -|.... .+-.....+|++..-.    .+.+.+.+ +.   ..++..+.++.-.|+.+++.+...        .....+.
T Consensus       414 ~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~  492 (980)
T 3ibv_A          414 MRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS  492 (980)
T ss_dssp             HHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred             HHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence            465555 6667778899887777    67777776 42   456889999999999988865421        2233466


Q ss_pred             hHHhhhcc-----chhhHHHHHHHHHHHHHHhhcChhH-HHHhhHHHHHH--hhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154           89 PPLETLCT-----VEETCMRDKAVESLCRIGSQMRESD-LVDWFIPLVKR--LAAGEWFTARVSACGLFHIAYPSAPDI-  159 (211)
Q Consensus        89 p~l~~l~~-----d~~~~VR~~a~~~l~~l~~~l~~~~-~~~~l~p~i~~--l~~d~~~~vR~~~a~~l~~l~~~~~~~-  159 (211)
                      +++..+++     +..+.||..+.+.+++.++-+.... .-..+++.+..  -..+++-+||..+|+.|..+++.+... 
T Consensus       493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L  572 (980)
T 3ibv_A          493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV  572 (980)
T ss_dssp             HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh
Confidence            77777655     8889999999999999999986532 22233344433  444788899999999999998877765 


Q ss_pred             --HHHHHHHHHHHhcCC-------C--------------CHHHHHHHHHhhHHHHhhhC
Q 039154          160 --LKTELRSIYTQLCQD-------D--------------MPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       160 --~~~~l~~~~~~L~~D-------~--------------~~~VR~aaa~~l~~~~~~~~  195 (211)
                        +...++..+..++.-       +              ...=+.-...+++.++...+
T Consensus       573 ~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          573 VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence              455667666666551       1              12235668889999998875

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.93  E-value=0.0075  Score=47.41  Aligned_cols=110  Identities=10%  Similarity=-0.036  Sum_probs=83.7

Q ss_pred             ccccchHHhhhccchhh--HHHHHHHHHHHHHHhhcCh--hH-HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           84 AHVLLPPLETLCTVEET--CMRDKAVESLCRIGSQMRE--SD-LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~--~VR~~a~~~l~~l~~~l~~--~~-~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                      ...-+|.+.+++..+++  .++..|+..+..++..-+.  .. +..-.+|.+.++..+++..++..++..+..++..-..
T Consensus         6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence            34567888888887766  8998999999888865432  22 2334678888888889999999999999999764222


Q ss_pred             H----HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhh
Q 039154          159 I----LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       159 ~----~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .    ....-+|.++++++ ..++.+|+.++..|.+++..
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~  125 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN  125 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence            1    23457899999998 47899999999999999764

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=96.88  E-value=0.0016  Score=61.54  Aligned_cols=121  Identities=13%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             ccchHHhhhccchhh-HHHHH-HHHHHHHHHhhcChhHHHHhhHHHHHHhhc-CCCchHHHhHHhHHHhhc----cCCCh
Q 039154           86 VLLPPLETLCTVEET-CMRDK-AVESLCRIGSQMRESDLVDWFIPLVKRLAA-GEWFTARVSACGLFHIAY----PSAPD  158 (211)
Q Consensus        86 ~llp~l~~l~~d~~~-~VR~~-a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~-d~~~~vR~~~a~~l~~l~----~~~~~  158 (211)
                      .++|.+..+.++++. +.... |...+..++...-+...-..++..+.+.+. +++| .|.++...+..++    -.++.
T Consensus       760 ~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~  838 (997)
T 1vsy_5          760 YVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTE  838 (997)
T ss_dssp             TTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCT
T ss_pred             HHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCH
Confidence            377877777777765 55555 555666666555444445556666776666 7899 9998866654432    23445


Q ss_pred             HHHHHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          159 ILKTELRSIYTQLCQDDM-PMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       159 ~~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      +....+.....+++.|+. .+||..|+..|..+....++.....+++.-|
T Consensus       839 ~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f  888 (997)
T 1vsy_5          839 EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERF  888 (997)
T ss_dssp             THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence            556789999999999999 9999999999999997762422223455444

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.72  E-value=0.011  Score=56.17  Aligned_cols=175  Identities=15%  Similarity=0.174  Sum_probs=114.9

Q ss_pred             HHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCCc------chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC
Q 039154           11 IAVLTDELKND----DIQLRLNSIRRLSTIARALGEE------RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG   79 (211)
Q Consensus        11 l~~l~~~l~s~----~~~~R~~a~~~l~~ia~~lg~~------~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig   79 (211)
                      ++.+.+.++++    ++..|..++-.++.+....-..      .....+..++.+ ....+.+-+..+.+.||++.    
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g----  468 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG----  468 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC----
Confidence            66666666664    4567778888887777654322      112334444444 44556777788889999954    


Q ss_pred             ccccccccchHHhhh---ccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           80 GVEHAHVLLPPLETL---CTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        80 ~~~~~~~llp~l~~l---~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                      -+.....|.|++...   ..+....||.+|+.+|..+... .++.+.+.++|.+..-.  ....+|.+|+..+-...+..
T Consensus       469 ~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n~~--e~~EvRiaA~~~Lm~t~P~~  545 (1056)
T 1lsh_A          469 QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNVA--IKSELRIRSCIVFFESKPSV  545 (1056)
T ss_dssp             CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHTCCCH
T ss_pred             ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHCcCH
Confidence            333333333333321   1122357999999999999854 45556667777665533  44579999999887654432


Q ss_pred             ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       157 ~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                           ..+..+...+-.|++..|+....+.|..+++.-.|.
T Consensus       546 -----~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          546 -----ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  581 (1056)
T ss_dssp             -----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             -----HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence                 356667777788899999999999999999987774

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.72  E-value=0.19  Score=43.38  Aligned_cols=155  Identities=14%  Similarity=0.068  Sum_probs=102.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      -..+++.-|. +...+.-|.+.++..-+..+.  ..++-+..+.. |.|++..||+.+...|+.+++.    +....+..
T Consensus        31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaD  103 (507)
T 3u0r_A           31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVAD  103 (507)
T ss_dssp             HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHH
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHH
Confidence            3456666655 466666688888888766653  44555666667 9999999999999999999984    56778889


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHh----h-ccCCChHHHHHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHI----A-YPSAPDILKTEL  164 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~----l-~~~~~~~~~~~l  164 (211)
                      +|.++++-++..-+...-++|..+...-+...+.    .++..+.+. ...+|.-+..-+..    + -..++++....+
T Consensus       104 vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~----~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          104 ILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG----GLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHhcChHHHHH----HHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            9999999888888888888888887764443322    222333222 23566544433322    1 223344456677


Q ss_pred             HHHHHHhcCCCCH
Q 039154          165 RSIYTQLCQDDMP  177 (211)
Q Consensus       165 ~~~~~~L~~D~~~  177 (211)
                      .....+.++|-+.
T Consensus       179 ~~~ikK~L~DVT~  191 (507)
T 3u0r_A          179 LTESKKVLEDVTG  191 (507)
T ss_dssp             HHHHHHHTTSCCH
T ss_pred             HHHHHHHhccccH
Confidence            7777777766653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.64  E-value=0.0021  Score=61.11  Aligned_cols=136  Identities=10%  Similarity=-0.019  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhccccccCccccccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcC
Q 039154           62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAG  136 (211)
Q Consensus        62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d  136 (211)
                      +.++..-+.|..+. .+++.++...+++.+.+..+.+  +|..+++++.+++.+++.+..+   .+-..+++.+..|.+.
T Consensus       454 ~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~  532 (1073)
T 3gjx_A          454 NLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ  532 (1073)
T ss_dssp             HHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc
Confidence            35556666666555 3666677777777776655543  4889999999999999888763   3445677888888765


Q ss_pred             C-----CchHHHhHHhHHHhhccCCC--hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154          137 E-----WFTARVSACGLFHIAYPSAP--DILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH  198 (211)
Q Consensus       137 ~-----~~~vR~~~a~~l~~l~~~~~--~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~  198 (211)
                      +     ...+|..++..++...+-+.  .++.+..+..+++.+.|+.++|..+|+.++..++..++...
T Consensus       533 ~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~l  601 (1073)
T 3gjx_A          533 KRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHF  601 (1073)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGG
T ss_pred             ccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5     35677777777776544433  33566677777788899999999999999999999987653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=96.36  E-value=0.046  Score=48.98  Aligned_cols=183  Identities=15%  Similarity=0.078  Sum_probs=117.4

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhc-CC-ChHHHHHHHHHHHhccccccCccc-----
Q 039154           11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSAN-ND-DDDEVLLAMAEELGVFIPYVGGVE-----   82 (211)
Q Consensus        11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~-~D-~~~~VR~~~a~~L~~l~~~ig~~~-----   82 (211)
                      |+.|.+-+.+.. .+-|.+|+..|..+++....+--...+-+++..+ .| ++.+.-+.+-+.|-.+...-+.+.     
T Consensus        23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~  102 (651)
T 3grl_A           23 IQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENS  102 (651)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            777777777655 7789999999998876554332233344444443 33 344544556666644332111100     


Q ss_pred             ----------c------ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHH-----hhHHHHHHhhcCCCchH
Q 039154           83 ----------H------AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD-----WFIPLVKRLAAGEWFTA  141 (211)
Q Consensus        83 ----------~------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~-----~l~p~i~~l~~d~~~~v  141 (211)
                                +      ...-++.|..+++.++..||.+++..|..++..-+.+..+.     .=+|.+..+.+|+...+
T Consensus       103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~i  182 (651)
T 3grl_A          103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVI  182 (651)
T ss_dssp             -----CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHH
T ss_pred             cccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHH
Confidence                      0      12236778888899999999999999999998865533221     24678888899999999


Q ss_pred             HHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCH----HHHHHHHHhhHHHHhh
Q 039154          142 RVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMP----MVRRSAASNLRKFAAT  193 (211)
Q Consensus       142 R~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~----~VR~aaa~~l~~~~~~  193 (211)
                      |..+...+..+...-..-    ..+..++.++++.+.+..    .|=.-|..-+.++++.
T Consensus       183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~  242 (651)
T 3grl_A          183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN  242 (651)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence            999999998887754332    122345666666666554    5666666666666654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.26  E-value=0.056  Score=51.47  Aligned_cols=173  Identities=10%  Similarity=0.042  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHhCCcchhhchhhhhhh-cC--CChHHHHHHHHHHHhccccccCccc---cccccchHHhhhccch----
Q 039154           29 SIRRLSTIARALGEERTPKELIPFLSA-NN--DDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETLCTVE----   98 (211)
Q Consensus        29 a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~--D~~~~VR~~~a~~L~~l~~~ig~~~---~~~~llp~l~~l~~d~----   98 (211)
                      .++..-.....++++.+...+.+.+.+ ..  ..++..+.+++=++|.++..+.++.   +...+++.|..+.+..    
T Consensus       458 ~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd  537 (1073)
T 3gjx_A          458 NMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD  537 (1073)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccc
Confidence            444443334467778888888888876 33  3468999999999999987665432   2334445555555332    


Q ss_pred             -hhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----------HHHHHH
Q 039154           99 -ETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----------LKTELR  165 (211)
Q Consensus        99 -~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----------~~~~l~  165 (211)
                       ...||......+++..+-+... ..-+.++..+.+...+.+-.|..++|..|..++..++..           +...++
T Consensus       538 ~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il  617 (1073)
T 3gjx_A          538 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEIL  617 (1073)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHH
T ss_pred             hhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHH
Confidence             3445655556777666555332 234555666666677888899999999999988776653           456666


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH
Q 039154          166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT  201 (211)
Q Consensus       166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~  201 (211)
                      ..+.+...+=.+.=......+++.+++..|++....
T Consensus       618 ~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~  653 (1073)
T 3gjx_A          618 NNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQE  653 (1073)
T ss_dssp             TSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHH
Confidence            666677777788888899999999999998765433

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.22  E-value=0.012  Score=55.92  Aligned_cols=171  Identities=9%  Similarity=-0.010  Sum_probs=97.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--c----c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL-GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--V----E   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l-g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~----~   82 (211)
                      +..+++.++++....-. |.+.+....... +...+.+.+.+++.. -...++.+|.++.-.++.++...-.  .    +
T Consensus       358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~  436 (1056)
T 1lsh_A          358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE  436 (1056)
T ss_dssp             HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence            66677777776644322 444443322222 222344444444443 3345788999999888888764321  1    1


Q ss_pred             cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh---hcCCCchHHHhHHhHHHhhccCCChH
Q 039154           83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL---AAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l---~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      ....+...+.+.++..+..-+..++++|++++.-   + .-+.+.|++...   ..+..-++|..+...|..+.......
T Consensus       437 ~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~-~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~  512 (1056)
T 1lsh_A          437 LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---N-SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK  512 (1056)
T ss_dssp             GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---G-GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---h-HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH
Confidence            1222333333444445566678888888888874   1 122344443321   12334589999999988887654433


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154          160 LKTELRSIYTQLCQDDMPMVRRSAASNLR  188 (211)
Q Consensus       160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~  188 (211)
                      .++-++++|.+  .+..++||.+|+..|-
T Consensus       513 v~~il~~i~~n--~~e~~EvRiaA~~~Lm  539 (1056)
T 1lsh_A          513 VQEIVLPIFLN--VAIKSELRIRSCIVFF  539 (1056)
T ss_dssp             HHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence            44555555544  5677999999987764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=96.20  E-value=0.083  Score=47.33  Aligned_cols=150  Identities=15%  Similarity=0.081  Sum_probs=101.3

Q ss_pred             cchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccccccchH-Hhhhccch-hhHHHHHHHHHHHHHHhhcC
Q 039154           43 ERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVE-ETCMRDKAVESLCRIGSQMR  118 (211)
Q Consensus        43 ~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~-~~~VR~~a~~~l~~l~~~l~  118 (211)
                      ..+..+-++-+.. + ...-.+=||+|...|..+++... ......=+|. +.-|-+|. +.++=.++.++|..+...-+
T Consensus        16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            3455666666665 3 34568889999999999987442 2223333444 45555554 34555567888866544332


Q ss_pred             hh---------------HH------HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH------HHHHHHh
Q 039154          119 ES---------------DL------VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL------RSIYTQL  171 (211)
Q Consensus       119 ~~---------------~~------~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l------~~~~~~L  171 (211)
                      .+               ..      ...-++.+..+.+...+.+|.++..++..++..-+...++.+      ++.++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence            11               01      123477788888999999999999999999888776544443      4789999


Q ss_pred             cCCCCHHHHHHHHHhhHHHHhh
Q 039154          172 CQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       172 ~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      ++|+..-+|..+..-|.++.+.
T Consensus       175 L~d~rE~iRneallLL~~Lt~~  196 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRS  196 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcC
Confidence            9999999999998888777763

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.13  E-value=0.15  Score=42.98  Aligned_cols=152  Identities=11%  Similarity=0.072  Sum_probs=95.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      +-.++.+.+......++..++++.+++-.-.+ ..-.+++|.+.+ ..|.+.+||+.+++=+...+.  ...+....+++
T Consensus        27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~--~~~el~~~~l~  103 (386)
T 3o2t_A           27 VVDLLNQAALITNDSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK--RDIELLLKLIA  103 (386)
T ss_dssp             HHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred             HHHHHHhhhccChHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            33445554332224788888888887654344 344677777777 778899999999888877664  23445566778


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh-hcCCCchHHHhHHhHHHhhccCCC---hHH---HH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL-AAGEWFTARVSACGLFHIAYPSAP---DIL---KT  162 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l-~~d~~~~vR~~~a~~l~~l~~~~~---~~~---~~  162 (211)
                      .|..|++|++..|-..++.+...+.             |.+.++ ++++.                 .+   .+.   ..
T Consensus       104 ~L~~LL~d~d~~V~K~~I~~~tslY-------------pl~f~~i~~~~~-----------------~~~~~e~~W~~m~  153 (386)
T 3o2t_A          104 NLNMLLRDENVNVVKKAILTMTQLY-------------KVALQWMVKSRV-----------------ISELQEACWDMVS  153 (386)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHH-------------HHHHHHHHHC-C-----------------CCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHH-------------HHHHHHHhcCCC-----------------cchhHHHHHHHHH
Confidence            8888888888888888887776643             222221 22221                 01   011   12


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      .+....+++......+||-.|++-+..++-...
T Consensus       154 ~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS  186 (386)
T 3o2t_A          154 AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS  186 (386)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence            344444555556678888888888888876654

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.06  E-value=0.41  Score=38.01  Aligned_cols=157  Identities=10%  Similarity=0.030  Sum_probs=94.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      +-.++.+.+......++..+++..+++-.-.+. .-.+++|.+.+ ..|.+.+||+.+++=+...+.  ...+.....++
T Consensus        17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~--~k~~l~~~~l~   93 (257)
T 3gs3_A           17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK--VKVELLPHVIN   93 (257)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred             HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            445666665533368888888888876443332 34555555556 567888999999888877653  23455666778


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh-hcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL-AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l-~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      .|..+++|+++.|-+.++.+...+-.             .+.++ ++++.-.-  .+-....         ....+....
T Consensus        94 ~L~~Ll~d~d~~V~K~~I~~~~~iY~-------------~~l~~i~~~~~~~~--~~~~~W~---------~m~~lK~~I  149 (257)
T 3gs3_A           94 VVSMLLRDNSAQVIKRVIQACGSIYK-------------NGLQYLCSLMEPGD--SAEQAWN---------ILSLIKAQI  149 (257)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHH-------------HHHHHHTTSSSCCH--HHHHHHH---------HHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCCcc--hHHHHHH---------HHHHHHHHH
Confidence            88888888888888888877655433             33332 22221000  0000000         113344555


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      +++......+||-.|.+-+..++-..
T Consensus       150 l~~~~s~n~gvkl~~iKF~e~vIl~q  175 (257)
T 3gs3_A          150 LDMIDNENDGIRTNAIKFLEGVVVLQ  175 (257)
T ss_dssp             HHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHccCCcchHHHHHHHHHHHHHhh
Confidence            55566667888888888888777554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=95.95  E-value=0.019  Score=51.97  Aligned_cols=73  Identities=21%  Similarity=0.206  Sum_probs=43.4

Q ss_pred             HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHH-HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTEL-RSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l-~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      +.++|++.+| +++....|..+|..+..++..-...   ..... .+++..++.|++..||.+|+..|.+++..-|++
T Consensus        34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            4566766654 4556667777777777776421111   12223 344566677777777777777777776655554

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=95.69  E-value=0.15  Score=40.47  Aligned_cols=103  Identities=11%  Similarity=0.049  Sum_probs=70.0

Q ss_pred             cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHH
Q 039154           87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  166 (211)
Q Consensus        87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~  166 (211)
                      +..++.+.....+ ..+....+...+++-.-+++ ....++|.+..+..|+...+|+.++..+.+.+.. ..+.....++
T Consensus        17 v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~~l~   93 (257)
T 3gs3_A           17 VVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPHVIN   93 (257)
T ss_dssp             HHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHH
T ss_pred             HHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            4444444433233 36777777777765554554 5566777777788888888888888888777733 1225677888


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          167 IYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       167 ~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      .+..|++|+++.|-|.+......+-.
T Consensus        94 ~L~~Ll~d~d~~V~K~~I~~~~~iY~  119 (257)
T 3gs3_A           94 VVSMLLRDNSAQVIKRVIQACGSIYK  119 (257)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            88888888888888887776655544

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=95.67  E-value=0.0041  Score=58.70  Aligned_cols=152  Identities=11%  Similarity=0.030  Sum_probs=102.2

Q ss_pred             hhhchhhhhhh-cC-CChHHHHHHHHHHHhcccc----ccCccccccccchHHhhhccchh-hHHHHHHHHHHHHHHhhc
Q 039154           45 TPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIP----YVGGVEHAHVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQM  117 (211)
Q Consensus        45 ~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~----~ig~~~~~~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l  117 (211)
                      ....++..+.+ .. +.++ +|.++..-+..+.-    .++.+ ....|...+..++.|++ .+||+.|..+|.-+.+-.
T Consensus       798 ~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~  875 (997)
T 1vsy_5          798 HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW  875 (997)
T ss_dssp             HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence            33444555555 44 5688 99988776543322    13333 34578889999999999 999999999999998776


Q ss_pred             -ChhHHHHhhHHHHHHhhc-----------CCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHH
Q 039154          118 -RESDLVDWFIPLVKRLAA-----------GEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVR  180 (211)
Q Consensus       118 -~~~~~~~~l~p~i~~l~~-----------d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR  180 (211)
                       +.....+.+..+..++.+           +..-..|.++.-.++++...++.+     ...+++..+-+.++|+.| |+
T Consensus       876 ~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~  954 (997)
T 1vsy_5          876 KEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TG  954 (997)
T ss_dssp             CSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HH
T ss_pred             CchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hH
Confidence             434444333322232212           111256777888888886665533     556666777777889777 99


Q ss_pred             HHHHHhhHHHHhhhCchhh
Q 039154          181 RSAASNLRKFAATVEPAHL  199 (211)
Q Consensus       181 ~aaa~~l~~~~~~~~~~~~  199 (211)
                      +++-+.+.+|=+.-...|-
T Consensus       955 ~tvk~tlseFkrTH~D~W~  973 (997)
T 1vsy_5          955 NAAKNTISEFKKVRADTWK  973 (997)
T ss_dssp             HHTHHHHHHHHHHTSTTHH
T ss_pred             HHHHHHHHHHHhccchhHH
Confidence            9999999999887766553

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=95.48  E-value=0.15  Score=39.68  Aligned_cols=138  Identities=14%  Similarity=0.066  Sum_probs=83.9

Q ss_pred             hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhcc-chhhHH-HHHHHHHHHHHHhhcChhHHHHhhH
Q 039154           51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCM-RDKAVESLCRIGSQMRESDLVDWFI  127 (211)
Q Consensus        51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~-d~~~~V-R~~a~~~l~~l~~~l~~~~~~~~l~  127 (211)
                      .++.+ ...+..|.|..+...+....+.+..     .-++.+..++. .+++.+ -..|...++.+...- +    ..+.
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p----~~~~  133 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINE-----THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-P----ELIS  133 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCG-----GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-G----GGGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-H----HHHH
Confidence            45555 5566778888888877654433322     22334444443 345554 334445556655542 1    2244


Q ss_pred             HHHHHhhcCCC-chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154          128 PLVKRLAAGEW-FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI  203 (211)
Q Consensus       128 p~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l  203 (211)
                      +.+..++.|++ |..|.++...++- .   .......+.++...++.|++.-||++++-.|.++++. .|+++...|
T Consensus       134 ~~l~~W~~s~~~w~rR~ai~~~l~~-~---~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~fl  205 (232)
T 3jxy_A          134 AYIPKWIASDNIWLQRAAILFQLKY-K---QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEYV  205 (232)
T ss_dssp             GTHHHHHHSSCHHHHHHHHHTTTTC-G---GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHH-H---hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence            56777777766 5556555544332 1   1112456778888999999999999999999999887 555554443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.12  E-value=0.28  Score=47.24  Aligned_cols=172  Identities=12%  Similarity=0.078  Sum_probs=110.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHH----hCCc---chhhchhhhhhh-cC---CChHHHHHHHHHHHhccccccCcccccccc
Q 039154           19 KNDDIQLRLNSIRRLSTIARA----LGEE---RTPKELIPFLSA-NN---DDDDEVLLAMAEELGVFIPYVGGVEHAHVL   87 (211)
Q Consensus        19 ~s~~~~~R~~a~~~l~~ia~~----lg~~---~~~~~L~p~l~~-~~---D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l   87 (211)
                      .+.++.+|..|...|....+.    ++++   ..|+.++.++.+ ..   +..+.||..++..+..++..-.+ ..+..+
T Consensus        57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~l  135 (1204)
T 3a6p_A           57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDM  135 (1204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHH
Confidence            466788898888877766533    4433   245566666654 21   25688999999999999886443 568888


Q ss_pred             chHHhhhccchhhHHHHHHHHHHHHHHhhc-C-----hhH-------HH---HhhHHHHHHhhcC---------------
Q 039154           88 LPPLETLCTVEETCMRDKAVESLCRIGSQM-R-----ESD-------LV---DWFIPLVKRLAAG---------------  136 (211)
Q Consensus        88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l-~-----~~~-------~~---~~l~p~i~~l~~d---------------  136 (211)
                      ++-+.++++. +...++.+...|..+++.. .     ...       +.   ..+++.+....++               
T Consensus       136 l~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~  214 (1204)
T 3a6p_A          136 LIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQE  214 (1204)
T ss_dssp             HHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTH
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            8888887765 3456888888888887652 1     110       01   1233333333322               


Q ss_pred             ----CCchHHHhHHhHHHhhccCCChHH--H--HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          137 ----EWFTARVSACGLFHIAYPSAPDIL--K--TELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       137 ----~~~~vR~~~a~~l~~l~~~~~~~~--~--~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                          +.-.++..+.+.+.....-.+...  .  ..+++.+..++.|  +.+|.+|+..|.+++..-
T Consensus       215 ~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          215 SKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCC
Confidence                112345555666655555444432  1  2488888888885  678999999999999754

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=95.02  E-value=0.14  Score=43.04  Aligned_cols=105  Identities=13%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE  163 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~  163 (211)
                      .+.+..+|++.....+ ..+....+.+.+++-.-+++ ....++|.+..+..|++..||+.++..+.+.+.. ..+....
T Consensus        24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~  100 (386)
T 3o2t_A           24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK  100 (386)
T ss_dssp             HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH
T ss_pred             HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            3344445544433222 34666666666654433343 4466777777788888888888877777777643 2224567


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          164 LRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      .++.+..|++|+++.|-|.++.....+-
T Consensus       101 ~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          101 LIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            7777777778888877777776665543

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=94.49  E-value=0.45  Score=36.17  Aligned_cols=136  Identities=11%  Similarity=0.035  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhccccccCccccccccchHHhhhccchh-hHHH-HHHHHHHHHHHhh------cChhHHHHhhHHHHHHhh
Q 039154           63 VLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCMR-DKAVESLCRIGSQ------MRESDLVDWFIPLVKRLA  134 (211)
Q Consensus        63 VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~-~~VR-~~a~~~l~~l~~~------l~~~~~~~~l~p~i~~l~  134 (211)
                      .|.++-+.|..       +.-.+.++|.|..+..++- ...+ ......+.++++.      +.-+-.-..++|.+....
T Consensus        24 ~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl   96 (196)
T 4atg_A           24 MKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV   96 (196)
T ss_dssp             THHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            45555555544       2335567777776665542 1111 1122233333332      233445566777765542


Q ss_pred             cCCC---chHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHHhhhCchhhHHHHHHH
Q 039154          135 AGEW---FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM--PMVRRSAASNLRKFAATVEPAHLKTDIMSI  206 (211)
Q Consensus       135 ~d~~---~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~~~~~~~~~~~~llp~  206 (211)
                      =...   -..|..+|..+..++...|..   .+..+...+.+-+.|+.  ...+-.|...|    ..+|++.+..-++|-
T Consensus        97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL----~~lG~~~vr~~llP~  172 (196)
T 4atg_A           97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCL----SILSKNVVNTVIREH  172 (196)
T ss_dssp             HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH----HHHCHHHHHTHHHHH
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHH----HHhHHHHHHHhhhcC
Confidence            2111   179999999999999988875   57888888888888764  66666666666    457778888888898


Q ss_pred             HHh
Q 039154          207 FED  209 (211)
Q Consensus       207 ~~~  209 (211)
                      +..
T Consensus       173 l~~  175 (196)
T 4atg_A          173 AEE  175 (196)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=94.38  E-value=0.94  Score=34.82  Aligned_cols=138  Identities=8%  Similarity=-0.011  Sum_probs=88.7

Q ss_pred             hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHH
Q 039154           51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIP  128 (211)
Q Consensus        51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p  128 (211)
                      .++.+ ...+.-|.|..++.-++...+.+.     ..-++.+..++. .+++.+=...+..+..++..-     ...+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-----~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence            45555 455788899988888876543222     233455566554 335555444335566665442     234667


Q ss_pred             HHHHhhcCCC-chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154          129 LVKRLAAGEW-FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI  203 (211)
Q Consensus       129 ~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l  203 (211)
                      .+..++.|++ |..|.++...++-    ......+.++++...+..|++.-||++++-.|.++++. .|+++...|
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl  198 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM  198 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence            7888888877 5445554444321    12224567788888899999999999999999999887 666655554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.37  E-value=0.94  Score=43.63  Aligned_cols=143  Identities=16%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             hhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhc---cc------------hhhHHHHHHHHHHHHH
Q 039154           49 LIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC---TV------------EETCMRDKAVESLCRI  113 (211)
Q Consensus        49 L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~---~d------------~~~~VR~~a~~~l~~l  113 (211)
                      |++.+.+....+|.+|......++.+...+..  .-+.+.|.|..++   .+            ....||.+|..++..+
T Consensus       534 Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~--~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L  611 (1204)
T 3a6p_A          534 LLQMVLNFDTKDPLILSCVLTNVSALFPFVTY--RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM  611 (1204)
T ss_dssp             HHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT--CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence            44443333567899999999999888887652  3345555555444   22            4568999999999999


Q ss_pred             HhhcChhH--HHHhhHHHHHHhhcCCC---chHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHH
Q 039154          114 GSQMRESD--LVDWFIPLVKRLAAGEW---FTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSA  183 (211)
Q Consensus       114 ~~~l~~~~--~~~~l~p~i~~l~~d~~---~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aa  183 (211)
                      +..++..-  ..+.+...+..+.....   -.-+....+.+..++..++..     +...+++.+++-.++++  +++ +
T Consensus       612 ~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~  688 (1204)
T 3a6p_A          612 CRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-V  688 (1204)
T ss_dssp             HHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-H
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-h
Confidence            99886542  23445555555443222   344555666666665444333     35566666666666544  333 5


Q ss_pred             HHhhHHHHhhhCc
Q 039154          184 ASNLRKFAATVEP  196 (211)
Q Consensus       184 a~~l~~~~~~~~~  196 (211)
                      .++...|+..+|-
T Consensus       689 ~s~~~~f~~~~G~  701 (1204)
T 3a6p_A          689 LSDVDAFIAYVGT  701 (1204)
T ss_dssp             HHCHHHHHHHHTS
T ss_pred             hcCHHHHHHHhCC
Confidence            6666777776653

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.98  E-value=1.3  Score=34.09  Aligned_cols=157  Identities=11%  Similarity=0.004  Sum_probs=98.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      .+.+.+...++..+.|.-|+-.+....+.+.     .+-++++.. + ..++..+-=..|..++.+..     .....+.
T Consensus        57 ~~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-----~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~-----~~~~~~~  126 (220)
T 2b6c_A           57 CQEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVA-----LHLTELP  126 (220)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHH-----HSGGGHH
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-----HChHHHH
Confidence            3444445667888999888877765432222     344566666 3 35666665555544555543     1233456


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~  168 (211)
                      +.+...+.+++.-+|..|+..+.....    +.-.+.+++.+..+.+|+.+-||++++-.|..++..-.+.     +-.|
T Consensus       127 ~~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~-----v~~f  197 (220)
T 2b6c_A          127 TIFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW-----VEEL  197 (220)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH-----HHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH-----HHHH
Confidence            778889999988887777765532222    2223567888898999999999999999999998774432     2222


Q ss_pred             HHhcCCCCHHHHHHHHHhh
Q 039154          169 TQLCQDDMPMVRRSAASNL  187 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l  187 (211)
                      +. -+.=.+.+++-|.+.+
T Consensus       198 l~-~~~l~~~~~r~Aikkl  215 (220)
T 2b6c_A          198 MK-ELVLSPLAQREGSKYL  215 (220)
T ss_dssp             HH-HSCCCHHHHHHHTTTS
T ss_pred             Hh-hccCCHHHHHHHHHhc
Confidence            22 2233456666665555

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=92.38  E-value=1.9  Score=33.34  Aligned_cols=157  Identities=10%  Similarity=0.148  Sum_probs=96.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHH-HHHhccccccCccccccccch
Q 039154           13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMA-EELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a-~~L~~l~~~ig~~~~~~~llp   89 (211)
                      .+.+...++..+.|..|+..+....+.+.++     -++.+..  -..++..+--..| ..+|.+...     ......+
T Consensus        65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----~p~~~~~  134 (232)
T 3jxy_A           65 IIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----HPELISA  134 (232)
T ss_dssp             HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----CGGGGGG
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----CHHHHHH
Confidence            4444557777888988888876443333322     2333333  1355666533333 344444331     2233667


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT  169 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~  169 (211)
                      .+...+.+++.-+|..|+..+.....    +.-...+++.+..+.+|+.+-||++++-.|..++..-.+    ...+.+.
T Consensus       135 ~l~~W~~s~~~w~rR~ai~~~l~~~~----~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~----~v~~fl~  206 (232)
T 3jxy_A          135 YIPKWIASDNIWLQRAAILFQLKYKQ----KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD----VVWEYVQ  206 (232)
T ss_dssp             THHHHHHSSCHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH----HHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHh----CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH----HHHHHHH
Confidence            78889999988887777766532221    122346777888899999999999999999998877443    2333322


Q ss_pred             HhcCCCCHHHHHHHHHhhHH
Q 039154          170 QLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       170 ~L~~D~~~~VR~aaa~~l~~  189 (211)
                      +-  .=.+.+++-|.+.|+.
T Consensus       207 ~~--~l~~~~~r~A~k~l~~  224 (232)
T 3jxy_A          207 NN--ELAPLSKREAIKHIKQ  224 (232)
T ss_dssp             HS--CCCHHHHHHHTTTTHH
T ss_pred             HC--CCCHHHHHHHHHhccc
Confidence            22  4457788888888764

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=87.62  E-value=5.2  Score=28.38  Aligned_cols=85  Identities=9%  Similarity=0.074  Sum_probs=56.9

Q ss_pred             hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH-----HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154          125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL  199 (211)
Q Consensus       125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~-----~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~  199 (211)
                      ..+..+++-.+..+..+-..+..++..+...+|..+.     .+|+..+.++++...+.||.-+..-+...+..++.+-=
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~  121 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQ  121 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3344444444555666666677777777777777622     56777777777778899999999999999999976532


Q ss_pred             HHHHHHHHHh
Q 039154          200 KTDIMSIFED  209 (211)
Q Consensus       200 ~~~llp~~~~  209 (211)
                      ...+.-.+..
T Consensus       122 l~~i~~~Y~~  131 (140)
T 3ldz_A          122 LSLISAMIKN  131 (140)
T ss_dssp             GTHHHHHHHH
T ss_pred             chHHHHHHHH
Confidence            2334434433

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=87.56  E-value=6.6  Score=28.62  Aligned_cols=72  Identities=8%  Similarity=0.113  Sum_probs=55.0

Q ss_pred             hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH-----HHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhhCch
Q 039154          126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQD-DMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~-----~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      .+-.+++-.+..+..+...+..++..+...+|..+.     .+|+..+.+++.. ..+.||.-+..-+...+..|+.+
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            334444444566777888888899888888888633     6677777777765 56899999999999999999764

>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17

Probab=86.33  E-value=4.4  Score=31.35  Aligned_cols=73  Identities=5%  Similarity=-0.051  Sum_probs=51.2

Q ss_pred             hHHHHHHhhcCCC-chHHHhHHh---HHHhhc-cCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154          126 FIPLVKRLAAGEW-FTARVSACG---LFHIAY-PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL  199 (211)
Q Consensus       126 l~p~i~~l~~d~~-~~vR~~~a~---~l~~l~-~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~  199 (211)
                      ..+.+.+++.|+. |..|.+...   .+..+. ........+.++......++|++.-||+++.-.|.++++. .+++.
T Consensus       109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~-~~~~~  186 (235)
T 1t06_A          109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS-YVPLH  186 (235)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH-CGGGH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh-CHHHH
Confidence            4556677766665 666666652   333321 1223446788899988899999999999999999999987 44443

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=85.03  E-value=8.8  Score=27.73  Aligned_cols=68  Identities=9%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             HHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHH-HHHhcC---CCCHHHHHHHHHhhHHHHhhhCch
Q 039154          130 VKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSI-YTQLCQ---DDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~-~~~L~~---D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      -+++.+..+..+...+..++..+...+|..+     ..+++.- ++++..   ++...||+-+..-+...+..|+.+
T Consensus        59 ~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~  135 (157)
T 1elk_A           59 KKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSS  135 (157)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence            3445446777788888888888888888762     2456665 567663   455799999999999999999743

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=81.81  E-value=3.7  Score=29.15  Aligned_cols=111  Identities=11%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             cchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc--
Q 039154            8 LYPIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH--   83 (211)
Q Consensus         8 ~~pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~--   83 (211)
                      .+|++.+++...|+.. +.-...+-.+..+.+. ++ ...++.+..+.+ +.+.++.|..-+..-|..+++..|..-+  
T Consensus         3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~-~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~e   80 (140)
T 3ldz_A            3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQ-SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLE   80 (140)
T ss_dssp             CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTT-ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHC-CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3577777877766531 1111222233333221 22 233455566666 7777787777777777777777664322  


Q ss_pred             --ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh
Q 039154           84 --AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES  120 (211)
Q Consensus        84 --~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~  120 (211)
                        ...++.-+..+++..+..||..+..-+..-+..+..+
T Consensus        81 vas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           81 VCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence              2223344444444445567776666666666655443

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.11  E-value=6.2  Score=28.77  Aligned_cols=111  Identities=11%  Similarity=0.112  Sum_probs=64.4

Q ss_pred             cchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc--
Q 039154            8 LYPIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH--   83 (211)
Q Consensus         8 ~~pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~--   83 (211)
                      -.|++.+++...|+.. +.--..+-.+..+.+. ++.. ..+.+-.+.+ +.+.++.|..-+..-|..+++..|...+  
T Consensus        13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~-~~~~-~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~e   90 (163)
T 1x5b_A           13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGS-TPNG-AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLE   90 (163)
T ss_dssp             CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHH-SSSH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhC-CCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4688899988876431 1111222233333322 2333 3455556666 7788888888888888888887775222  


Q ss_pred             --ccccchHHhhhccc-hhhHHHHHHHHHHHHHHhhcChh
Q 039154           84 --AHVLLPPLETLCTV-EETCMRDKAVESLCRIGSQMRES  120 (211)
Q Consensus        84 --~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~l~~~  120 (211)
                        ...++.-+..+++. .+..||..+..-+..-...++.+
T Consensus        91 vas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           91 VCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence              12333444444443 34577777777777766666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-61
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-07
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.004
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	0.004

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  199 bits (505), Expect = 2e-61
 Identities = 122/207 (58%), Positives = 153/207 (73%)

Query: 5   DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
           D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT  EL+PFL+    D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET +RDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            F+PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDLT 211
           S L +FA  +E  ++K++I+ +F +L 
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLA 212

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 2/193 (1%)

Query: 1   MAMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFL-SANNDD 59
           + +       +  + +  ++   ++RL  I  +  +A  LG E   ++L     +   D 
Sbjct: 394 IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453

Query: 60  DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE 119
              +  A    L   +   G       ++P +  +        R   +  +  +     +
Sbjct: 454 VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513

Query: 120 SDLVDWFIPLVKRLAAGEWFTARVSAC-GLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178
                  +P V R+A       R +    L  I        L++E++ I  +L QD    
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD 573

Query: 179 VRRSAASNLRKFA 191
           V+  A   L   +
Sbjct: 574 VKYFAQEALTVLS 586

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 24/191 (12%), Positives = 54/191 (28%), Gaps = 17/191 (8%)

Query: 18  LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFL--SANNDDDDEVLLAMAEELGVFI 75
           L + + ++   + + ++ IA          EL+  +  +   +  + V  A    LG   
Sbjct: 104 LVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163

Query: 76  PYVGG-----VEHAHVLLPPL--ETLCTVEETCMRDKAVESLCR----IGSQMRESDLVD 124
                     V  ++ +L  +      T     +R  A+ +L      I + M      +
Sbjct: 164 ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERN 223

Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC----QDDMPMVR 180
           + + +V      E    + +A G            +K  +      L     +     V 
Sbjct: 224 YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVA 283

Query: 181 RSAASNLRKFA 191
                      
Sbjct: 284 SMTVEFWSTIC 294

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.89
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.32
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.31
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.27
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.27
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.22
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.15
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.13
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.12
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.1
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.08
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.04
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.02
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.0
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.99
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.94
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.77
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.75
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.74
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.7
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.62
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.46
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.36
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.23
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.74
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.4
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.24
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.03
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	93.07
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	81.3

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-32  Score=238.24  Aligned_cols=209  Identities=59%  Similarity=0.937  Sum_probs=198.5

Q ss_pred             CCCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCcc
Q 039154            2 AMVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGV   81 (211)
Q Consensus         2 ~~~~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~   81 (211)
                      +-.||+++||+.|+++|+|+|+.+|..|++.++.+|..+|+++++++|+|++.+..+++++|+.+++++|+.+.+.+|++
T Consensus         3 ~~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~   82 (588)
T d1b3ua_           3 ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             SCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred             CCcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Confidence            34689999999999999999999999999999999999999999999999999944556689999999999999999999


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~  161 (211)
                      ++.+.++|.+..++.+++..||.+|++++..+++..+++.+.+.++|++.++.+++++.+|.+++.+++.+++..+....
T Consensus        83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~  162 (588)
T d1b3ua_          83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK  162 (588)
T ss_dssp             GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL  210 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L  210 (211)
                      .++.+.+.+|++|+++.||++++..++.+++.++.+.+...++|.+..+
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l  211 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL  211 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999889999998765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.9e-23  Score=178.34  Aligned_cols=200  Identities=17%  Similarity=0.224  Sum_probs=187.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      +..+...++++++.+|..+++.++.+...+|.......++|.+.+ ..|.++.||.++++.++.++..+|.+...+.+.|
T Consensus       365 ~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~  444 (588)
T d1b3ua_         365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS  444 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHH
Confidence            456677889999999999999999999999998888999999999 9999999999999999999999998888889999


Q ss_pred             HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHH
Q 039154           90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIY  168 (211)
Q Consensus        90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~  168 (211)
                      .+..++.|+.+.||.+|+.++..+++.++.+...+.++|.+.++.+|++|.+|.+++..+..+...++.+ +.++++|.+
T Consensus       445 ~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~l  524 (588)
T d1b3ua_         445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV  524 (588)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998888877 678999999


Q ss_pred             HHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154          169 TQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL  210 (211)
Q Consensus       169 ~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L  210 (211)
                      .++++|++|.||.++++.++.+...++++...+.+.|++..|
T Consensus       525 l~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L  566 (588)
T d1b3ua_         525 LRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL  566 (588)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence            999999999999999999999999999988889999999876

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.9e-13  Score=113.54  Aligned_cols=199  Identities=16%  Similarity=0.138  Sum_probs=148.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-------   79 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-------   79 (211)
                      ...+...++++++++|..++..+..++...+..   .....+.+++.. ..++++++|..+.+.+..+++...       
T Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~  297 (458)
T d1ibrb_         218 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  297 (458)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            345666788999999999999999998776642   122333444445 677888999999888877754210       


Q ss_pred             ------------c----cccccccchHHhhhc-------cchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154           80 ------------G----VEHAHVLLPPLETLC-------TVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG  136 (211)
Q Consensus        80 ------------~----~~~~~~llp~l~~l~-------~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d  136 (211)
                                  .    ......+.|.+....       .|+++.+|..|...+..++..++.+ +...++|++.+..+|
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s  376 (458)
T d1ibrb_         298 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKN  376 (458)
T ss_dssp             CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTC
T ss_pred             hHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcC
Confidence                        0    011223344444432       2445679999999999999999865 457899999999999


Q ss_pred             CCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh-HHHHHHHHHhh
Q 039154          137 EWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL-KTDIMSIFEDL  210 (211)
Q Consensus       137 ~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~-~~~llp~~~~L  210 (211)
                      +.|++|.+++..++.++...+.+    +...++|.++.+++|+++.||.+|+..+++++..++.... ...+-|++..|
T Consensus       377 ~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         377 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  455 (458)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            99999999999999998765443    5678999999999999999999999999999999875433 33466665544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.3e-11  Score=94.99  Aligned_cols=167  Identities=16%  Similarity=0.059  Sum_probs=122.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp   89 (211)
                      .+.+++.|+|+|+.+|..|+..|..+    |.    +..+|.+.+ ++|.++.||..++..|+.+....+   .....++
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~----~~----~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~   89 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLR----GG----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---CEDNVFN   89 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHH----CC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---THHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhh----CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---cccchHH
Confidence            46788999999999999999999765    44    456788888 999999999999999998764222   2223333


Q ss_pred             -HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---------
Q 039154           90 -PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---------  159 (211)
Q Consensus        90 -~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---------  159 (211)
                       ++..+++|+++.||..|+.++..++..-+.  ....+++.+....+|+.+.||..++..++.........         
T Consensus        90 ~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~~~  167 (276)
T d1oyza_          90 ILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDP  167 (276)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCS
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHccccch--hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhcccc
Confidence             456678899999999999999998875432  23557788888888988889988887776654322110         


Q ss_pred             -----------------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154          160 -----------------LKTELRSIYTQLCQDDMPMVRRSAASNLRKF  190 (211)
Q Consensus       160 -----------------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~  190 (211)
                                       ......+.+...+.|+.+.||..++..++.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         168 NGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             SHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             cchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchh
Confidence                             0123455677778888888888888777654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.9e-11  Score=111.44  Aligned_cols=198  Identities=13%  Similarity=0.147  Sum_probs=148.8

Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc
Q 039154            9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARAL---GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus         9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~l---g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      +.|+.+++.|+|.|+..|.+|+.-|...-..-   ..+.+...+++.+.+ +.|.+++||..+++.|+.++..++.+ ..
T Consensus         3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~-~~   81 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QV   81 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred             hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh-hH
Confidence            45788999999999999999988776543211   123445678899999 99999999999999999999987654 44


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--------HHHHhhHHHHHHh-hcCCCchHHHhHHhHHHhhccC
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--------DLVDWFIPLVKRL-AAGEWFTARVSACGLFHIAYPS  155 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--------~~~~~l~p~i~~l-~~d~~~~vR~~~a~~l~~l~~~  155 (211)
                      ..+++.|...+.+++..+|..+..+|..+...++..        .+...+++.+... .+...+.+|..+...+..+...
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            566666666667778889999999999988877643        2234445554443 4556788999999999988877


Q ss_pred             CChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154          156 APDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF  207 (211)
Q Consensus       156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~  207 (211)
                      +|..   +...+++.+...++|+.+.||+.|+..++.++..++.+.+...+-.++
T Consensus       162 ~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll  216 (1207)
T d1u6gc_         162 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL  216 (1207)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHH
T ss_pred             hhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            7754   567899999999999999999999999999999988766544333333

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.22  E-value=1.9e-12  Score=89.31  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA  135 (211)
Q Consensus        56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~  135 (211)
                      +.|+++.||++++..|+.+    |.+     -++.|..+++|+++.||..|+.+|+.+..        ...+|.+.++.+
T Consensus         1 L~D~~~~VR~~A~~aL~~~----~~~-----~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM----GDE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC----SST-----THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----CHH-----HHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhc
Confidence            4688899999999988874    332     23556677889999999999998876542        245677788889


Q ss_pred             CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154          136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLR  188 (211)
Q Consensus       136 d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~  188 (211)
                      |+++.||..++..++.+..       ....+.+..+++|+++.||++|+..|.
T Consensus        64 d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999988742       367888889999999999999998874

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1e-11  Score=112.94  Aligned_cols=186  Identities=18%  Similarity=0.174  Sum_probs=135.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc----ccc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV----EHA   84 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~----~~~   84 (211)
                      ..+.+...++++.+|..+++.+..+....+..  .--..+++++.+ ..|++++||..+++-|..+++.-...    ...
T Consensus       216 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l  295 (888)
T d1qbkb_         216 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL  295 (888)
T ss_dssp             HHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTST
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            44555667888999999999887765433321  112356677677 88999999999999888776531110    011


Q ss_pred             cccchHHhhhc------------------------------------------------------------cchhhHHHH
Q 039154           85 HVLLPPLETLC------------------------------------------------------------TVEETCMRD  104 (211)
Q Consensus        85 ~~llp~l~~l~------------------------------------------------------------~d~~~~VR~  104 (211)
                      ..+.|.+....                                                            .+.++.+|.
T Consensus       296 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  375 (888)
T d1qbkb_         296 PKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRK  375 (888)
T ss_dssp             TTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHH
T ss_pred             HHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHH
Confidence            11122111100                                                            012245799


Q ss_pred             HHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHH
Q 039154          105 KAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRR  181 (211)
Q Consensus       105 ~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~  181 (211)
                      .+..++..+++.++.+ +...++|++.+..+++.|++|.+++..|+.+++...+.   +...++|.++++++|+.+.||.
T Consensus       376 ~a~~~L~~l~~~~~~~-il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~  454 (888)
T d1qbkb_         376 CSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS  454 (888)
T ss_dssp             HHHHHSTTTTTTCCSS-SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHhhHhhhhHHH-HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHH
Confidence            9999999998877765 45788999999999999999999999999998876654   5678999999999999999999


Q ss_pred             HHHHhhHHHHhhhCchh
Q 039154          182 SAASNLRKFAATVEPAH  198 (211)
Q Consensus       182 aaa~~l~~~~~~~~~~~  198 (211)
                      +++..++.++..+.++.
T Consensus       455 ~a~~~l~~~~~~~~~~~  471 (888)
T d1qbkb_         455 ITCWTLSRYAHWVVSQP  471 (888)
T ss_dssp             HHHHHHHHTHHHHHSSC
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999998876543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.13  E-value=2.3e-11  Score=94.66  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=77.7

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhc--cccccCccc--c-
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGV--FIPYVGGVE--H-   83 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~--l~~~ig~~~--~-   83 (211)
                      |...+...+++++..+|..++..+       +.        +.+.. +.|+++.||.+++++++.  +...+..++  . 
T Consensus        91 p~~~L~~L~~D~d~~VR~~aa~~l-------~~--------~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR  155 (233)
T d1lrva_          91 PREQLSALMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVR  155 (233)
T ss_dssp             CSGGGGGTTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHH
T ss_pred             CHHHHHHHhcCCChhHHHHHHhcc-------CH--------HHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHH
Confidence            334455666777788887666543       21        22233 456666666666655321  111111000  0 


Q ss_pred             ----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           84 ----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        84 ----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                          ...-.+.+..+++|+++.||..++..+.       .        |.+..+.+|++|.||..++..++         
T Consensus       156 ~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D~d~~VR~aaae~~~---------  211 (233)
T d1lrva_         156 KLVAKRLPEESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDPDWTVRLAAVEHAS---------  211 (233)
T ss_dssp             HHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCSSHHHHHHHHHHSC---------
T ss_pred             HHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhCCCHHHHHHHHHhcc---------
Confidence                0011245667777777777777776542       1        45677888999999988886432         


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 039154          160 LKTELRSIYTQLCQDDMPMVRRSAASNL  187 (211)
Q Consensus       160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l  187 (211)
                            +.++..+.|+++.||.++++.|
T Consensus       212 ------~~ll~~L~D~d~~VR~aA~~~L  233 (233)
T d1lrva_         212 ------LEALRELDEPDPEVRLAIAGRL  233 (233)
T ss_dssp             ------HHHHHHCCCCCHHHHHHHHCCC
T ss_pred             ------HHHHHHhCCCCHHHHHHHHHhC
Confidence                  2345667899999999988764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.6e-10  Score=90.66  Aligned_cols=197  Identities=9%  Similarity=0.092  Sum_probs=143.4

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCC----cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154           11 IAVLTDELKND--DIQLRLNSIRRLSTIARALGE----ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (211)
Q Consensus        11 l~~l~~~l~s~--~~~~R~~a~~~l~~ia~~lg~----~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~   83 (211)
                      +..+...++++  +..+|..+++.+..+......    +.....+.+.+.+ ..+++++||..+.+.|..+++..+. ..
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~  251 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YM  251 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-GC
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH-HH
Confidence            56667777654  478899999988877643322    2233456677777 8899999999999999998886543 22


Q ss_pred             ccc----cchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-----------------------hHHHHhhHHHHHHhhc-
Q 039154           84 AHV----LLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-----------------------SDLVDWFIPLVKRLAA-  135 (211)
Q Consensus        84 ~~~----llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-----------------------~~~~~~l~p~i~~l~~-  135 (211)
                      ..+    +.+.+....+++.+.+|..|++.+..+++....                       ......+.|.+..... 
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  331 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  331 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            233    334455566777889999999988888754211                       1223456666655532 


Q ss_pred             ------CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh---hHHHHHHH
Q 039154          136 ------GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH---LKTDIMSI  206 (211)
Q Consensus       136 ------d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~---~~~~llp~  206 (211)
                            |+.|.+|.+++..+..++...|++....+++.+.+.++|++|.+|.+++..|+.++...+++.   ....++|.
T Consensus       332 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~  411 (458)
T d1ibrb_         332 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT  411 (458)
T ss_dssp             CCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHH
T ss_pred             chhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence                  556889999999999999999988788999999999999999999999999999987655443   33456665


Q ss_pred             HH
Q 039154          207 FE  208 (211)
Q Consensus       207 ~~  208 (211)
                      +.
T Consensus       412 l~  413 (458)
T d1ibrb_         412 LI  413 (458)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.5e-10  Score=90.33  Aligned_cols=134  Identities=17%  Similarity=0.061  Sum_probs=103.8

Q ss_pred             hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh
Q 039154           47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW  125 (211)
Q Consensus        47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~  125 (211)
                      +.-...+.+ +.|+++.||.+++..|+.+    |.    +..+|.+..+++|+++.||..|+.+|..+......+.  ..
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~----~~----~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~--~~   87 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLR----GG----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED--NV   87 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--HH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhh----CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc--ch
Confidence            334455566 8899999999999999985    33    2467889999999999999999999998865443322  12


Q ss_pred             hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154          126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFA  191 (211)
Q Consensus       126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~  191 (211)
                      +-.++..+.+|++|.||..++..++.++..-+. ....+++.+...++|+.+.||.+++..++.+.
T Consensus        88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_          88 FNILNNMALNDKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHccccch-hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence            223455667899999999999999988765332 35678999999999999999999998876644

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2e-10  Score=106.52  Aligned_cols=178  Identities=17%  Similarity=0.156  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhcccc-------------------------
Q 039154           23 IQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIP-------------------------   76 (211)
Q Consensus        23 ~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~-------------------------   76 (211)
                      ...|..++..+++++...|.... .++.+.+.+ +.|++++||.+++..||.++.                         
T Consensus       829 ~~~~~~al~~Lge~~~~~~~~~~-~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll  907 (1207)
T d1u6gc_         829 DSIRLLALLSLGEVGHHIDLSGQ-LELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLL  907 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSC-THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHH
Confidence            45666667777777777765443 345555555 667777777777777765542                         


Q ss_pred             --------ccCcc---ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH
Q 039154           77 --------YVGGV---EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA  145 (211)
Q Consensus        77 --------~ig~~---~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~  145 (211)
                              ..+..   .....+++.+...++++++.+|..+++++++++...+     ..++|.+.+..+|+++.+|..+
T Consensus       908 ~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-----~~~lp~L~~~l~~~~~~~r~~a  982 (1207)
T d1u6gc_         908 HSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-----ETLLPRLKGYLISGSSYARSSV  982 (1207)
T ss_dssp             HHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-----GGTHHHHTTTSSSSCHHHHHHH
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHhCCCCHHHHHHH
Confidence                    11111   1234456667777888899999999999999986543     4578999999999999999999


Q ss_pred             HhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh---HHHHHHHH
Q 039154          146 CGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL---KTDIMSIF  207 (211)
Q Consensus       146 a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~---~~~llp~~  207 (211)
                      +..+..+....+..   +...+++.|++.++|+++.||++|...|..++..- |+.+   ...++|.+
T Consensus       983 i~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~-p~li~~~l~~llp~l 1049 (1207)
T d1u6gc_         983 VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK-PSLIRDLLDTVLPHL 1049 (1207)
T ss_dssp             HHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC-GGGTGGGHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence            99999888877765   56778888999999999999999999999998754 3332   34566655

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.4e-10  Score=103.69  Aligned_cols=183  Identities=13%  Similarity=0.040  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhh
Q 039154           24 QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEET  100 (211)
Q Consensus        24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~  100 (211)
                      ..|..+...+..++...|.+ .-..++|++.+ +.++++.+|.++...||.+++....  ..+...++|.+...++|+++
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~-il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~  450 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA  450 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSS-SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCH
T ss_pred             hHHHHHHHHHhhHhhhhHHH-HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCH
Confidence            46888888888888877764 44678899988 8999999999999999998873321  22345577888889999999


Q ss_pred             HHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCC
Q 039154          101 CMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQD  174 (211)
Q Consensus       101 ~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D  174 (211)
                      .||..|+.+++++++.+..+   ...+.+++.+.+...|++.+||.++|..|..+++..+..   +...+++.+...+++
T Consensus       451 ~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~  530 (888)
T d1qbkb_         451 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK  530 (888)
T ss_dssp             HHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999998866443   334557888888889999999999999999988776655   678899999999999


Q ss_pred             CCHHHHHHHHHhhHHHHhhhCchh----hHHHHHHHH
Q 039154          175 DMPMVRRSAASNLRKFAATVEPAH----LKTDIMSIF  207 (211)
Q Consensus       175 ~~~~VR~aaa~~l~~~~~~~~~~~----~~~~llp~~  207 (211)
                      ....++..+...++.++..+++..    ..+.++|.+
T Consensus       531 ~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l  567 (888)
T d1qbkb_         531 YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL  567 (888)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Confidence            999999999999999998887643    344455544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.04  E-value=4.3e-11  Score=93.11  Aligned_cols=135  Identities=20%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154           10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (211)
Q Consensus        10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll   88 (211)
                      |+..++..++++|+.+|..++..       +|.        +.+.. ..|++++||.+++.+++               .
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~-------Lp~--------~~L~~L~~D~d~~VR~~aa~~l~---------------~  116 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYR-------LPR--------EQLSALMFDEDREVRITVADRLP---------------L  116 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTT-------SCS--------GGGGGTTTCSCHHHHHHHHHHSC---------------T
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHH-------cCH--------HHHHHHhcCCChhHHHHHHhccC---------------H
Confidence            45556677788888888877654       342        34455 67888888888887653               1


Q ss_pred             hHHhhhccchhhHHHHHHHHHHHH-----HHhhcChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           89 PPLETLCTVEETCMRDKAVESLCR-----IGSQMRESDL----VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        89 p~l~~l~~d~~~~VR~~a~~~l~~-----l~~~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      +.|..+++|+++.||..++..+..     +++.-+.+..    .+.-.+.+.++.+|+.+.||..++..++         
T Consensus       117 ~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~---------  187 (233)
T d1lrva_         117 EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR---------  187 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC---------
T ss_pred             HHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC---------
Confidence            235556667777777776654210     0000000000    0011233445556666666666655432         


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154          160 LKTELRSIYTQLCQDDMPMVRRSAASNLR  188 (211)
Q Consensus       160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~  188 (211)
                           .+.+..|++|++|.||.+++.+++
T Consensus       188 -----~~~L~~l~~D~d~~VR~aaae~~~  211 (233)
T d1lrva_         188 -----GDDLLELLHDPDWTVRLAAVEHAS  211 (233)
T ss_dssp             -----GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred             -----cHHHHHHHhCCCHHHHHHHHHhcc
Confidence                 145678899999999999987653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.02  E-value=1.8e-11  Score=84.16  Aligned_cols=108  Identities=23%  Similarity=0.222  Sum_probs=86.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhcc
Q 039154           18 LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT   96 (211)
Q Consensus        18 l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~   96 (211)
                      |.|+|+.+|..|+..|+.    +|++     -++.+.+ +.|+++.||..++..|+.+..    +    ..+|.+..+++
T Consensus         1 L~D~~~~VR~~A~~aL~~----~~~~-----~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----~----~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSR----MGDE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQD----E----RAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTS----CSST-----THHHHHHGGGCSCHHHHHHHHHHHGGGCS----H----HHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHH----hCHH-----HHHHHHHHHcCCCHHHHHHHHHHHHhcch----h----hhHHHHHhhhc
Confidence            578889999988888764    3543     2444556 889999999999999987532    2    35678888899


Q ss_pred             chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154           97 VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFH  150 (211)
Q Consensus        97 d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~  150 (211)
                      |+++.||..|+.+|++++.        ....|.+..+.+|+++.||..++..+.
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999998853        356788888999999999999988764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6.2e-09  Score=92.41  Aligned_cols=186  Identities=17%  Similarity=0.130  Sum_probs=141.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-------   79 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-------   79 (211)
                      ++.+...++++++.+|..+++.+..+....+..-   ....+.+++.. ..++.++++..+.+.+..++....       
T Consensus       219 ~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  298 (876)
T d1qgra_         219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  298 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556677889999999999999999988765432   22344555555 678888998888877766654210       


Q ss_pred             ----------------ccccccccchHHhhhc-------cchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154           80 ----------------GVEHAHVLLPPLETLC-------TVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG  136 (211)
Q Consensus        80 ----------------~~~~~~~llp~l~~l~-------~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d  136 (211)
                                      .......++|.+....       .++++.+|.+|...+..++...+.+ +...++|++.+...+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~  377 (876)
T d1qgra_         299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKN  377 (876)
T ss_dssp             HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhcc
Confidence                            0112234445544433       2334579999999999999887664 457789999999999


Q ss_pred             CCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          137 EWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       137 ~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      +.|+.|.+++..++.+....+..    +...+++.+...++|+.+.||.+++..++.+++.+++.
T Consensus       378 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  442 (876)
T d1qgra_         378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  442 (876)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             chHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh
Confidence            99999999999999998887765    45678899999999999999999999999999987653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=8.8e-09  Score=90.96  Aligned_cols=186  Identities=14%  Similarity=0.125  Sum_probs=140.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcch---hhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-------
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERT---PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-------   79 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~---~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-------   79 (211)
                      ++.+.+.++++++.+|..+++.+..++...+..-.   .+.+.++... ..+.++.||..+.+-+..++....       
T Consensus       226 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~  305 (861)
T d2bpta1         226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA  305 (861)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788999999999999999999987765321   2223333344 678899999998888776654211       


Q ss_pred             ---c---------cccccccchHHhhhcc-------chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCch
Q 039154           80 ---G---------VEHAHVLLPPLETLCT-------VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFT  140 (211)
Q Consensus        80 ---~---------~~~~~~llp~l~~l~~-------d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~  140 (211)
                         .         ......+.|.+.....       ++++.+|..+...+..++..++.+ +...+.+.+.....++.|+
T Consensus       306 ~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  384 (861)
T d2bpta1         306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWR  384 (861)
T ss_dssp             HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh-hhhhhcchhhhhhhhHHHH
Confidence               0         0112233444433332       234578999999999999888754 4567788899999999999


Q ss_pred             HHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154          141 ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA  197 (211)
Q Consensus       141 vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~  197 (211)
                      .|.+++..++.+....+..    +...+++.+.+++.|+++.||.+++..++.++..+++.
T Consensus       385 ~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  445 (861)
T d2bpta1         385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES  445 (861)
T ss_dssp             HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchh
Confidence            9999999999999988875    45788999999999999999999999999999998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.4e-08  Score=83.76  Aligned_cols=183  Identities=11%  Similarity=0.100  Sum_probs=141.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC---ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG---GVE   82 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig---~~~   82 (211)
                      +..+...+++++++.|..++..+..++..- .+.    ....++|.+.+ +.++++.++..+...+++++..-.   ..-
T Consensus       190 l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~  268 (434)
T d1q1sc_         190 LPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV  268 (434)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHhccccchhhhHHhhhcccchhh-hhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHH
Confidence            455677788999999999999888775321 111    23456788888 888899999999999998875211   111


Q ss_pred             cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154           83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      ....+++.+..++++.+..||..|+..+..++..-..  + ....-++|.+..+..++.+.+|..++..+..+....+.+
T Consensus       269 ~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~  348 (434)
T d1q1sc_         269 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE  348 (434)
T ss_dssp             HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHH
Confidence            2345678888999999999999999999999864322  1 223457899999999999999999999999998776665


Q ss_pred             H-----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154          160 L-----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV  194 (211)
Q Consensus       160 ~-----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~  194 (211)
                      .     ...+++.+.++++++++.++..+...+..+.+..
T Consensus       349 ~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         349 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            2     2335789999999999999999999999887754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.7e-08  Score=83.20  Aligned_cols=182  Identities=12%  Similarity=0.116  Sum_probs=122.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCc---c
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG---V   81 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~---~   81 (211)
                      ++.+++.++|+|++.+..|++.+..+.+.-...    -.+..++|.+.+ +. .++++||..++..|.+++..-..   .
T Consensus        15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~   94 (434)
T d1q1sc_          15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA   94 (434)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence            889999999999999999999998876422221    123457888888 64 45789999999999998752111   0


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h---------------------------------------
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S---------------------------------------  120 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~---------------------------------------  120 (211)
                      -...-.+|.+..++++++..+|+.|+.+|.+++..-+.  +                                       
T Consensus        95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~  174 (434)
T d1q1sc_          95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  174 (434)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHT
T ss_pred             hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHh
Confidence            12345688888899999999999999999998754211  0                                       


Q ss_pred             ---------HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 039154          121 ---------DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNL  187 (211)
Q Consensus       121 ---------~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l  187 (211)
                               .....++|.+..+.+++...+|..++..+..++..-...    ....+++.++++++++++.++..++..+
T Consensus       175 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l  254 (434)
T d1q1sc_         175 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  254 (434)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhh
Confidence                     012224555666666666666766666666665442221    1223566667777777777777777766


Q ss_pred             HHHHh
Q 039154          188 RKFAA  192 (211)
Q Consensus       188 ~~~~~  192 (211)
                      ..++.
T Consensus       255 ~~l~~  259 (434)
T d1q1sc_         255 GNIVT  259 (434)
T ss_dssp             HHHTT
T ss_pred             hhHHh
Confidence            66653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.2e-08  Score=79.88  Aligned_cols=171  Identities=12%  Similarity=0.044  Sum_probs=126.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcchhhc------hhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccccccch
Q 039154           20 NDDIQLRLNSIRRLSTIARALGEERTPKE------LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLP   89 (211)
Q Consensus        20 s~~~~~R~~a~~~l~~ia~~lg~~~~~~~------L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~~~llp   89 (211)
                      +.+.+.|..|+..|..++..   .+....      +-|++.. +.+++++||..++..|++++..-..   .-.....+|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~---~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~  104 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN---MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR  104 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC---HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            44567788888888777532   122222      2344555 6788999999999999999974211   112345677


Q ss_pred             HHhhhcc-chhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HH
Q 039154           90 PLETLCT-VEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LK  161 (211)
Q Consensus        90 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~  161 (211)
                      .|..++. +.++.+|..|+.++..++...+..   ....-.++.+.++..+++..++..++..+..++..-+..    ..
T Consensus       105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (264)
T d1xqra1         105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            7777775 567889999999999998776543   234556788888888999999999999998887654332    24


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      ...+|.+..+++++++.||..++..|..++..
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            45789999999999999999999999998754

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=7.9e-08  Score=81.19  Aligned_cols=182  Identities=10%  Similarity=0.028  Sum_probs=141.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~   83 (211)
                      +..+...|+|++..+|..++..+..++..-...   -....++|.+.. +.+.++.+++.++..+.+++..-..   ...
T Consensus       164 i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~  243 (503)
T d1wa5b_         164 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV  243 (503)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred             hHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHH
Confidence            567788899999999999999999887421110   123344566777 7888889999999999998864322   123


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-  159 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-  159 (211)
                      ...++|.+..++...+..++..++.++..++..-+.   ..+...++|.+..+..++++.++..++..++.++..-+.. 
T Consensus       244 ~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~  323 (503)
T d1wa5b_         244 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT  323 (503)
T ss_dssp             HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999875432   1334567888999999999999999999999998654433 


Q ss_pred             ---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       160 ---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                         ....+++.+..+++++.+.||+.++..+.+++.
T Consensus       324 ~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~  359 (503)
T d1wa5b_         324 QVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  359 (503)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence               233578999999999999999999999998865

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=3.2e-07  Score=80.74  Aligned_cols=182  Identities=11%  Similarity=0.042  Sum_probs=133.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCccc--ccccc
Q 039154           12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGGVE--HAHVL   87 (211)
Q Consensus        12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~~~--~~~~l   87 (211)
                      +.+++.+.++++.+|..++..+..|+..-.++..=.+++|.+.+ +.. +.+.+|..+...|+.+++.++...  ....+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~  177 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45667788999999999999999999876654322578999888 654 456789899999998887665421  12222


Q ss_pred             chHH----hhhc-cchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154           88 LPPL----ETLC-TVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (211)
Q Consensus        88 lp~l----~~l~-~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~  158 (211)
                      .+++    ..+. .+.+..||..|++++..+...++..    ...+.+++.+....+++.+.+|..++..+..++...+.
T Consensus       178 ~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2222    2233 3456899999999999998877553    34566788888889999999999999999888766554


Q ss_pred             H----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          159 I----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       159 ~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .    ....+.+......++.++.||..+..-+..++..
T Consensus       258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            4    2233455566778899999999998877766554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=3.5e-07  Score=77.10  Aligned_cols=185  Identities=12%  Similarity=0.067  Sum_probs=143.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~   83 (211)
                      +..++..+.+.+...+..++..+..++..-.+.   .....++|.+.+ +..++++++..++..+..++..-..   ...
T Consensus       206 ~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~  285 (503)
T d1wa5b_         206 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI  285 (503)
T ss_dssp             HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             cccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhh
Confidence            556777888999999989999998887543322   234568899988 8889999999999999988762111   112


Q ss_pred             ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154           84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-  159 (211)
Q Consensus        84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-  159 (211)
                      ...+++.+..++..++..++..|+..+..++..-+..   ....-++|.+..+.+++...+|..++..+..++..-... 
T Consensus       286 ~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~  365 (503)
T d1wa5b_         286 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI  365 (503)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHH
Confidence            3457788899999999999999999999998643322   123347899999999999999999999999987653322 


Q ss_pred             ---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       160 ---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                         ....+++.++.++.+.++.||+.|+..+.+++....
T Consensus       366 ~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~  404 (503)
T d1wa5b_         366 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL  404 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccc
Confidence               235678999999999999999999999999987643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-06  Score=76.95  Aligned_cols=190  Identities=9%  Similarity=0.097  Sum_probs=136.6

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCC----cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--
Q 039154           11 IAVLTDELKND--DIQLRLNSIRRLSTIARALGE----ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--   81 (211)
Q Consensus        11 l~~l~~~l~s~--~~~~R~~a~~~l~~ia~~lg~----~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--   81 (211)
                      +..++..+.++  +..+|..+++.+......+..    +..+..+++.+.. .++++++||..+.+.|..+.+.....  
T Consensus       174 l~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~  253 (876)
T d1qgra_         174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            34555666543  467898898888766544333    2344556777777 88999999999999999988754321  


Q ss_pred             -ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-----------------------hHHHHhhHHHHHHhh---
Q 039154           82 -EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-----------------------SDLVDWFIPLVKRLA---  134 (211)
Q Consensus        82 -~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-----------------------~~~~~~l~p~i~~l~---  134 (211)
                       .....+.+.+.....++.+.++..+++.+..++.....                       ......++|.+....   
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  333 (876)
T d1qgra_         254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (876)
T ss_dssp             HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence             12234555666667778888998888877777653211                       123445666666553   


Q ss_pred             ----cCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhH
Q 039154          135 ----AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLK  200 (211)
Q Consensus       135 ----~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~  200 (211)
                          .++.|.+|.++...+..++...+.+....+.+.+.+.+.++.|.+|.+++..++.+....+.+...
T Consensus       334 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~  403 (876)
T d1qgra_         334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK  403 (876)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH
Confidence                245689999999999999888888777889999999999999999999999999887766654433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7.5e-06  Score=69.04  Aligned_cols=196  Identities=11%  Similarity=0.054  Sum_probs=128.5

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc---
Q 039154           11 IAVLTDELKN-DDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV---   81 (211)
Q Consensus        11 l~~l~~~l~s-~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~---   81 (211)
                      +..++..|++ +++..|..++..|..++.  .++    -.+...+|.+.. +.+.++.|+..++..|.+++..-...   
T Consensus        61 v~~l~~~L~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  138 (529)
T d1jdha_          61 VSAIVRTMQNTNDVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhC--CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhH
Confidence            5666777754 568888888888877642  111    122344677777 88899999999999999887632211   


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHH-HHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPL-VKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~-i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                      -...-.+|.+..++++++..+|..++.++..++..-...   ....-.++. +.-+.+.+...++..++..+..++..-.
T Consensus       139 ~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~  218 (529)
T d1jdha_         139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS  218 (529)
T ss_dssp             HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT
T ss_pred             HHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc
Confidence            112345788888999999999999999999987553221   112223333 3444455666788888888877765433


Q ss_pred             hH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154          158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE  208 (211)
Q Consensus       158 ~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~  208 (211)
                      ..   .....++.+..+++++++.++..++..+..+.............+|.+.
T Consensus       219 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv  272 (529)
T d1jdha_         219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV  272 (529)
T ss_dssp             HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHH
T ss_pred             ccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhh
Confidence            22   2344667788888888888888888888777665443333344444443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.2e-06  Score=68.79  Aligned_cols=182  Identities=12%  Similarity=-0.070  Sum_probs=134.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEH   83 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~   83 (211)
                      +..++..|+++++.++..|+..|..++..-+..+   .....+|.+.. +.+.+++++..++..+..++..-..   ...
T Consensus       103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  182 (529)
T d1jdha_         103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL  182 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            6778888999999999999999999986433321   23345688888 8899999999999999988752110   011


Q ss_pred             ccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154           84 AHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-  159 (211)
Q Consensus        84 ~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-  159 (211)
                      ....++.+..++. .+...++..++..+..++..-...  ....-.++.+.++.++++.+++..++..+..+....... 
T Consensus       183 ~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~  262 (529)
T d1jdha_         183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE  262 (529)
T ss_dssp             HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS
T ss_pred             hcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchh
Confidence            2223556666654 445789999999998886533221  233456788888889999999999988888776554433 


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154          160 LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA  192 (211)
Q Consensus       160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~  192 (211)
                      .....++.+++++.++++.||..++..|.+++.
T Consensus       263 ~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence            345788999999999999999999999988764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.3e-05  Score=61.92  Aligned_cols=147  Identities=12%  Similarity=-0.015  Sum_probs=109.0

Q ss_pred             HHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhCC---cchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCcc---
Q 039154           11 IAVLTD-ELKNDDIQLRLNSIRRLSTIARALGE---ERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGV---   81 (211)
Q Consensus        11 l~~l~~-~l~s~~~~~R~~a~~~l~~ia~~lg~---~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~---   81 (211)
                      +..++. .++++++++|..|+..|+.++..-..   .......+|.+.+ + .+.+++||..++..+..++..-...   
T Consensus        60 ~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~  139 (264)
T d1xqra1          60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ  139 (264)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHH
Confidence            344444 57799999999999999999853221   1233456777777 5 4678999999999999988643211   


Q ss_pred             ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154           82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (211)
Q Consensus        82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~  157 (211)
                      ......++.+..++.+++..+|..++..+..++..-+.  . ....-.+|.+..+.++++..+|..++..+..++...+
T Consensus       140 ~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~  218 (264)
T d1xqra1         140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  218 (264)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCH
Confidence            12334578888899999999999999999999876433  1 2234478999999999999999999999998876543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4.5e-05  Score=61.13  Aligned_cols=102  Identities=12%  Similarity=0.074  Sum_probs=53.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchh-----hhhhh-cCCChHHHHHHHHHHHhccccccCccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELI-----PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~-----p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      |..+++.|+|+|+++|..|+..|..++  .+.+..++.+.     |.+.+ +.+++++||..++..|.+++.  +.++..
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~--~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~   79 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTNK   79 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHT--SSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHH--cCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHH
Confidence            445666666666666666666666654  44445555554     44555 556666666666666666553  112111


Q ss_pred             cc-----cchHHhhhc-cchhhHHHHHHHHHHHHHHhh
Q 039154           85 HV-----LLPPLETLC-TVEETCMRDKAVESLCRIGSQ  116 (211)
Q Consensus        85 ~~-----llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~  116 (211)
                      ..     .+|.+..++ .+.+..+|..|+..+..++..
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence            11     234443333 233455555555555555544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=7.2e-05  Score=59.87  Aligned_cols=142  Identities=13%  Similarity=-0.016  Sum_probs=100.7

Q ss_pred             hhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc-----cchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h
Q 039154           49 LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV-----LLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S  120 (211)
Q Consensus        49 L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~-----llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~  120 (211)
                      .+|.+.+ +.+.+++|+..++..|++++.  +.++....     .+|.|.++++++++.||..|+.+|.+++..-+.  .
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4788888 889999999999999999984  33333333     368899999999999999999999999865443  2


Q ss_pred             HH-HHhhHHHHHH-hhcCCCchHHHhHHhHHHhhccCCChH--H-HHHHHHHHHHh---------------cCCCCHHHH
Q 039154          121 DL-VDWFIPLVKR-LAAGEWFTARVSACGLFHIAYPSAPDI--L-KTELRSIYTQL---------------CQDDMPMVR  180 (211)
Q Consensus       121 ~~-~~~l~p~i~~-l~~d~~~~vR~~~a~~l~~l~~~~~~~--~-~~~l~~~~~~L---------------~~D~~~~VR  180 (211)
                      .+ ..-.+|.+.+ +.++....+|..++..+..++......  . ...+.+....+               .....+.|+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            22 2223444444 556677889999999999998765443  2 22223322222               256778889


Q ss_pred             HHHHHhhHHHHh
Q 039154          181 RSAASNLRKFAA  192 (211)
Q Consensus       181 ~aaa~~l~~~~~  192 (211)
                      ..++..+..++.
T Consensus       161 ~~a~~~l~~~~~  172 (457)
T d1xm9a1         161 FNATGCLRNLSS  172 (457)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            888888877654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.74  E-value=0.00021  Score=57.41  Aligned_cols=176  Identities=16%  Similarity=0.212  Sum_probs=120.3

Q ss_pred             HHHHHHHhcC----CCHHHHHHHHHHHHHHHHHh--CCcchhhchhhhh----hh-cCCChHHHHHHHHHHHhccccccC
Q 039154           11 IAVLTDELKN----DDIQLRLNSIRRLSTIARAL--GEERTPKELIPFL----SA-NNDDDDEVLLAMAEELGVFIPYVG   79 (211)
Q Consensus        11 l~~l~~~l~s----~~~~~R~~a~~~l~~ia~~l--g~~~~~~~L~p~l----~~-~~D~~~~VR~~~a~~L~~l~~~ig   79 (211)
                      ++.+.+.+++    +++..|..+.-.++.++...  ......+++++.+    .+ ....+.+-+..+.+.||++    |
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g  200 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA----G  200 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhcc----C
Confidence            5666666665    46788888888888777643  2223444444444    34 3445566667778888885    4


Q ss_pred             ccccccccchHHhhhcc---chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154           80 GVEHAHVLLPPLETLCT---VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA  156 (211)
Q Consensus        80 ~~~~~~~llp~l~~l~~---d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~  156 (211)
                      -+.....+.|++.....   +....||..|+.+|.++... .+..+.+.++|.+..-  +....+|.++...+...-+. 
T Consensus       201 ~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~-~p~~v~~~l~~i~~n~--~e~~EvRiaA~~~lm~t~P~-  276 (336)
T d1lsha1         201 QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNV--AIKSELRIRSCIVFFESKPS-  276 (336)
T ss_dssp             CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHTCCC-
T ss_pred             CHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhc-CcHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCC-
Confidence            34444445554433221   22468999999999998776 4677888888888863  44456999999888664332 


Q ss_pred             ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154          157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH  198 (211)
Q Consensus       157 ~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~  198 (211)
                          ...+..+...+-.|++..|+..+.+.|..+++.=.|+.
T Consensus       277 ----~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         277 ----VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             ----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             ----HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcch
Confidence                23555666667789999999999999999999877753

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.006  Score=53.90  Aligned_cols=189  Identities=15%  Similarity=0.103  Sum_probs=115.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcc-----------h----hhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccc
Q 039154           20 NDDIQLRLNSIRRLSTIARALGEER-----------T----PKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (211)
Q Consensus        20 s~~~~~R~~a~~~l~~ia~~lg~~~-----------~----~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~   84 (211)
                      +.+...|-.++..++.++...+...           .    ...+.|.+....+..+.+|..++..++.+.+...++ ..
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~-~~  494 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QL  494 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HH
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHH-HH
Confidence            4567778778887777764322211           1    122233333345667899999999999999866543 45


Q ss_pred             cccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh----------hHHHHhhHHHHHHh---hcCCC--ch---HHHhHH
Q 039154           85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE----------SDLVDWFIPLVKRL---AAGEW--FT---ARVSAC  146 (211)
Q Consensus        85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~----------~~~~~~l~p~i~~l---~~d~~--~~---vR~~~a  146 (211)
                      ..+++.+..+++|++..||..|+.++..++.....          +.+..++-+.+..+   ..+..  ..   ++..+.
T Consensus       495 ~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll  574 (959)
T d1wa5c_         495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM  574 (959)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            67888888999999999999999999999876432          33333333333222   21211  11   112233


Q ss_pred             hHHHhhccCCChH-------HHHHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhhhCchh---hHHHHHHHHHh
Q 039154          147 GLFHIAYPSAPDI-------LKTELRSIYTQLCQDDM-PMVRRSAASNLRKFAATVEPAH---LKTDIMSIFED  209 (211)
Q Consensus       147 ~~l~~l~~~~~~~-------~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~~~~~---~~~~llp~~~~  209 (211)
                      ..+..+...++..       ....+.+.+....+|+. +..+..+...+..++...+++.   +...++|.+..
T Consensus       575 ~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~  648 (959)
T d1wa5c_         575 RSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLT  648 (959)
T ss_dssp             HHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            3443333333322       34556666666666554 7788888899999998887753   44557777643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.24  E-value=0.0019  Score=51.63  Aligned_cols=172  Identities=9%  Similarity=0.032  Sum_probs=103.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-cchhhchhhhhhh-cCCChHHHHHHHHHHHhcccccc--Cccccccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE-ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYV--GGVEHAHV   86 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~-~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~i--g~~~~~~~   86 (211)
                      +..+++.+++.....- .+..-+..++...-| ...-+.+.+++.. -...++.||.++.-.+|.++...  ..+.+.+.
T Consensus        90 ~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~  168 (336)
T d1lsha1          90 LLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE  168 (336)
T ss_dssp             HHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG
T ss_pred             HHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence            6667777776664432 344455544433222 1233334444433 22357889999999999887642  12223333


Q ss_pred             cchHH----hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc---CCCchHHHhHHhHHHhhccCCChH
Q 039154           87 LLPPL----ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA---GEWFTARVSACGLFHIAYPSAPDI  159 (211)
Q Consensus        87 llp~l----~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~---d~~~~vR~~~a~~l~~l~~~~~~~  159 (211)
                      +++.+    .+..+.++..-+..++++|++++..    ..-+.+.|++..-..   +..-++|..+...+..+....+..
T Consensus       169 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~  244 (336)
T d1lsha1         169 LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK  244 (336)
T ss_dssp             GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHhccCCH----hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH
Confidence            34333    3333444455566778888887742    223444444432211   224579999999999887766555


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154          160 LKTELRSIYTQLCQDDMPMVRRSAASNLRK  189 (211)
Q Consensus       160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~  189 (211)
                      .++.++++|.+  .+.+++||.+|+..+-+
T Consensus       245 v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         245 VQEIVLPIFLN--VAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             HHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence            77888899887  67779999999887643

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.0023  Score=56.63  Aligned_cols=132  Identities=15%  Similarity=0.060  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhccccccCccccccccchHHhhhc----c--chhhHHHHHHHHHHHHHHhhcCh-----------hHHHHh
Q 039154           63 VLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC----T--VEETCMRDKAVESLCRIGSQMRE-----------SDLVDW  125 (211)
Q Consensus        63 VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~----~--d~~~~VR~~a~~~l~~l~~~l~~-----------~~~~~~  125 (211)
                      .|.++..-+..++...+. .....+++.+...+    .  +.++..|++++..++.+....+.           ..+.+.
T Consensus       377 ~r~~a~~ll~~l~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  455 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEV-LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF  455 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHH
Confidence            567777777777765443 23333444443332    2  34577899999988888654321           122333


Q ss_pred             hHHHHHHh---hcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154          126 FIPLVKRL---AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE  195 (211)
Q Consensus       126 l~p~i~~l---~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~  195 (211)
                      +.+.+...   .+++...+|..++..++..+....++....+++.+.++++|+++.||..|+.++..+....+
T Consensus       456 l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~  528 (959)
T d1wa5c_         456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (959)
T ss_dssp             HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence            33333222   23444568889999999999988888788999999999999999999999999999987543

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.07  E-value=1.1  Score=32.47  Aligned_cols=144  Identities=8%  Similarity=0.004  Sum_probs=90.0

Q ss_pred             hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChhHH
Q 039154           45 TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRESDL  122 (211)
Q Consensus        45 ~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~~  122 (211)
                      ...++...+.+ ...+.-|.|..++.-+....+...     ...++.++.++..- ++.+=......+......-     
T Consensus        47 ~~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~-----~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----  116 (213)
T d2b6ca1          47 PKEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----  116 (213)
T ss_dssp             CHHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----
T ss_pred             CHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----
Confidence            34566666666 566778999999888777655322     23346666666554 3554443333333322221     


Q ss_pred             HHhhHHHHHHhhcCCC-chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH
Q 039154          123 VDWFIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT  201 (211)
Q Consensus       123 ~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~  201 (211)
                      ...+.+.+..+++|++ |..|.++...++-.    .....+.++.....+..|++.-||++.+-.|.++++. .|+++..
T Consensus       117 ~~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~----~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~-~p~~v~~  191 (213)
T d2b6ca1         117 LTELPTIFALFYGAENFWNRRVALNLQLMLK----EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEE  191 (213)
T ss_dssp             GGGHHHHHHHHTTCSSHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH-CHHHHHH
Confidence            1235677788888776 66666555544321    1113467788889999999999999999999999875 5555544


Q ss_pred             HH
Q 039154          202 DI  203 (211)
Q Consensus       202 ~l  203 (211)
                      .|
T Consensus       192 fl  193 (213)
T d2b6ca1         192 LM  193 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.30  E-value=9.7  Score=29.16  Aligned_cols=178  Identities=13%  Similarity=0.139  Sum_probs=108.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCcc-------hhhchhhhhhhcCCChHHHHHHHHHHHhc------ccc
Q 039154           11 IAVLTDELKNDDIQLRLNSIRRLSTIARA-LGEER-------TPKELIPFLSANNDDDDEVLLAMAEELGV------FIP   76 (211)
Q Consensus        11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~-lg~~~-------~~~~L~p~l~~~~D~~~~VR~~~a~~L~~------l~~   76 (211)
                      +..++..|..-+.+.|..+......+-+. .|...       +..+++..+.. .-+++++-..++.-|..      +++
T Consensus        71 l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~-gye~~eiAl~~G~mLREcik~e~lak  149 (330)
T d1upka_          71 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLK-GYESPEIALNCGIMLRECIRHEPLAK  149 (330)
T ss_dssp             HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHH-GGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHh-hcCCcchhhhhhHHHHHHHhhHHHHH
Confidence            55677778888888888887777665431 22110       11122222222 11222222222222221      111


Q ss_pred             ccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hH---HHHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154           77 YVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SD---LVDWFIPLVKRLAAGEWFTARVSACGLFH  150 (211)
Q Consensus        77 ~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~---~~~~l~p~i~~l~~d~~~~vR~~~a~~l~  150 (211)
                      .+-.   .+. +--+.+..+-++..|-.-|..++..+...-..   +.   ..+.++..+.+|.+++++-.|.-..++++
T Consensus       150 ~iL~---s~~-f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         150 IILW---SEQ-FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHH---SGG-GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHc---cHH-HHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            1110   111 22233466777788888888888888766522   22   23557777788999999999999999999


Q ss_pred             hhccCCChH-----H--HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154          151 IAYPSAPDI-----L--KTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT  193 (211)
Q Consensus       151 ~l~~~~~~~-----~--~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~  193 (211)
                      .+...-...     +  ..+-+.+...|++|++..++-.|..-+.-|+..
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence            986443332     1  246678889999999999999999888777765