Citrus Sinensis ID: 039166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVIFE
Secondary Structure (PSIPRED)
cEEcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHcccccHHHHEEccccccccccccccccccccccEEEEEEccccEEEEEEEEEccccccEEEEEEEccccEEEEEEccEEEEcccccEEEEEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccccccccccccccccccccHHHcccccEEEEccHHHHHHHHHHccccHHHHHHHEccccccccccccccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEEccccEEEEEEccEEEEEEccEEEEEEEEEEEEccccccccccEEEEEEEEEcccEEEEcEEEEEEc
Coil and Loop (DISEMBL)
mmtttdivnlegkpiiderllpadifaigaghvnpsrandpglvfdiqpddyipylcglnytdREIAILVQRKVKCSEISSIKeaqlnypsfsltlgsgaqtytrtvtnvgqpnslykslifvpqgvevevtpstlqfneanqkaSFAVTFkrtsyggnrqdmpfaqgyikwssdqhsvriplvvife
Flexible Loop (DISEMBL)
mmtttdivnlegkpiideRLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLqfneanqkasFAVTFKRTSYGGNRQDMPFAQGYIkwssdqhsvrIPLVVIFE
Low Complexity Region (SEG)
MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVIFE
Disordered region (IsUnstruct)
******IVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVIF*
Disordered Region (DISOPRED)
MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCS**SSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVIFE
Disordered Region (DISEMBL)
MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVIFE
Disordered Region (DISPRO)
MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVIFE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVVIFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
O64495	775	Subtilisin-like protease	yes	no	0.984	0.238	0.413	2e-32
O65351	757	Subtilisin-like protease	no	no	0.978	0.243	0.380	1e-29
Q9LLL8	749	Xylem serine proteinase 1	no	no	0.819	0.205	0.410	4e-27
Q39547	731	Cucumisin OS=Cucumis melo	N/A	no	0.867	0.222	0.333	6e-22

>sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 11/196 (5%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT D+ + +GK I D    PA +FAIGAGHVNP +A +PGLV++IQP DYI YLC L 
Sbjct: 581 LMTTADLYDRQGKAIKDGNK-PAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLG 639

Query: 61  YTDREIAILVQRKVKCSEISSIKEA-QLNYPSFSLTLGSGAQT--YTRTVTNVGQPNSLY 117
           +T  +I  +  + V C+ I        LNYPS ++    G  T   TR VTNVG PNS+Y
Sbjct: 640 FTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIY 699

Query: 118 KSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTF--KRTSYGGNRQDMPFAQGYIKWSSD 175
              +  P+G++V V P  L F   +Q  S+ V F  K+ + GG  +   FAQG + W + 
Sbjct: 700 SVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGG--KVASFAQGQLTWVNS 757

Query: 176 QH---SVRIPLVVIFE 188
            +    VR P+ V  +
Sbjct: 758 HNLMQRVRSPISVTLK 773

Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 5/189 (2%)

Query: 1   MMTTTDIVNLEGKPIID-ERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGL 59
           +MTT      +GKP++D     P+  F  GAGHV+P+ A +PGL++D+  +DY+ +LC L
Sbjct: 571 LMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCAL 630

Query: 60  NYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTL-GSGAQTYTRTVTNVGQPNSLYK 118
           NYT  +I  + +R   C    S   A LNYPSF++ + G GA  YTRTVT+VG   +   
Sbjct: 631 NYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSV 690

Query: 119 SLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHS 178
            +     GV++ V P+ L F EAN+K S+ VTF   S   ++     + G I+WS  +H 
Sbjct: 691 KVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDS---SKPSGSNSFGSIEWSDGKHV 747

Query: 179 VRIPLVVIF 187
           V  P+ + +
Sbjct: 748 VGSPVAISW 756

Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 14/168 (8%)

Query: 26  FAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILV-QRKVKCSEI-SSIK 83
           FA G G +NP RA  PGLV+D+    Y+ +LCG  Y    +A LV  R V CS I   + 
Sbjct: 582 FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLG 641

Query: 84  EAQLNYPSFSLTLGSGAQT----YTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFN 139
              LNYP+  LTL S   +    + R VTNVG P+S+Y + +  P+GVE+ V P +L F+
Sbjct: 642 HDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFS 701

Query: 140 EANQKASFAVTFKRTSYGGNRQDMP--FAQGYIKWSSDQHSVRIPLVV 185
           +A+QK SF V  K       +Q  P     G + W S +HSVR P+V+
Sbjct: 702 KASQKRSFKVVVK------AKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1

 Score =  103 bits (257), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 11/174 (6%)

Query: 16  IDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVK 75
           ++ R  P   FA G+GHVNP +A  PGLV+D    DY+ +LCG  Y  + +  +      
Sbjct: 561 MNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA 620

Query: 76  CSEISSIKEAQLNYPSFSLTLGSGAQT----YTRTVTNVGQPNSLYKSLIFVPQGVEVEV 131
           C+  ++ +   LNYPSF L++ S +QT    + RT+T+V    S Y+++I  PQG+ + V
Sbjct: 621 CTSGNTGRVWDLNYPSFGLSV-SPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISV 679

Query: 132 TPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVV 185
            P+ L FN    + SF +T + +  G            + WS   H VR P+ +
Sbjct: 680 NPNVLSFNGLGDRKSFTLTVRGSIKGF------VVSASLVWSDGVHYVRSPITI 727

Cucumis melo (taxid: 3656)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
225426708	772	PREDICTED: subtilisin-like protease SDD1	0.994	0.242	0.627	1e-65
255537183	738	Xylem serine proteinase 1 precursor, put	0.978	0.249	0.606	8e-63
255537189	745	Xylem serine proteinase 1 precursor, put	0.978	0.246	0.585	2e-62
255537203	758	Xylem serine proteinase 1 precursor, put	0.978	0.242	0.620	2e-62
388491338	186	unknown [Medicago truncatula]	0.989	1.0	0.598	4e-61
3413481	747	serine protease [Solanum lycopersicum]	0.978	0.246	0.601	5e-61
357481819	756	Subtilisin-like serine protease [Medicag	0.994	0.247	0.595	5e-61
225426710	755	PREDICTED: subtilisin-like protease SDD1	0.984	0.245	0.611	5e-61
224071646	698	predicted protein [Populus trichocarpa]	0.978	0.263	0.595	1e-60
350536267	745	subtilisin-like protease precursor [Sola	0.973	0.245	0.598	2e-60

>gi|225426708|ref|XP_002275452.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 141/188 (75%), Gaps = 1/188 (0%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           ++TT D+ NLE KPIIDE   PAD+FA GAGHVNPS ANDPGL++D++PDDYIPYLCGL 
Sbjct: 586 IITTADLHNLENKPIIDETFQPADLFATGAGHVNPSAANDPGLIYDLEPDDYIPYLCGLG 645

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
           YTD E+ ++V R +KCSE SSI EAQLNYPSFS+ LG  + TY+RTVTNVG  NS Y   
Sbjct: 646 YTDEEVGLIVNRTLKCSEESSIPEAQLNYPSFSIALGPSSGTYSRTVTNVGAANSSYSVQ 705

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
           I  P GVEV V P  L+F E NQK ++ V+F RTS GG     PFAQG++KW SD HSVR
Sbjct: 706 ILAPSGVEVSVNPDKLEFTEVNQKITYMVSFSRTSAGG-EGGKPFAQGFLKWVSDSHSVR 764

Query: 181 IPLVVIFE 188
            P+ V+FE
Sbjct: 765 SPISVMFE 772

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537183|ref|XP_002509658.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549557|gb|EEF51045.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis]

 Score =  244 bits (624), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 144/188 (76%), Gaps = 4/188 (2%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT  + NL GKPI D+  +PA +F +GAGHVNPSRANDPGLV+DIQPDDYIPYLCGL 
Sbjct: 555 IMTTASLDNLGGKPISDQDYVPATVFDMGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLG 614

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
           Y+D+ + ++VQRKVKC+ +++I EAQLNYPSFS+ LGS  QTYTRTVTN GQPNS Y   
Sbjct: 615 YSDKHVRVIVQRKVKCTNVATIPEAQLNYPSFSIKLGSSPQTYTRTVTNFGQPNSAYYLE 674

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
           IF P+GV+V VTP  + FN  NQKA+++ TF +    GN   + FAQGY+KW ++ +SV 
Sbjct: 675 IFAPKGVDVMVTPQKITFNGVNQKATYSATFSKN---GNANGL-FAQGYLKWVAEGYSVG 730

Query: 181 IPLVVIFE 188
            P+ VIFE
Sbjct: 731 SPIAVIFE 738

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537189|ref|XP_002509661.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549560|gb|EEF51048.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 143/188 (76%), Gaps = 4/188 (2%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT ++ NL GKPI DE  +P+ +F +GAGHVNPSRANDPGL++DIQPDDYIPYLCGL 
Sbjct: 562 IMTTANLDNLGGKPISDEDFVPSTVFDMGAGHVNPSRANDPGLIYDIQPDDYIPYLCGLG 621

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
           Y+D+ + ++VQRKVKC+ ++SI EAQLNYPSFS+ LGS  QTYTRTVTN GQPNS Y   
Sbjct: 622 YSDKHVRVIVQRKVKCTNVTSIPEAQLNYPSFSIILGSKPQTYTRTVTNFGQPNSAYDFE 681

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
           IF P+GV++ VTP  + F+   QKA+++VTF R      + +  FAQGY+KW +D + V 
Sbjct: 682 IFAPKGVDILVTPHRISFSGLKQKATYSVTFSRN----GKANGSFAQGYLKWMADGYKVN 737

Query: 181 IPLVVIFE 188
            P+ +IFE
Sbjct: 738 SPIAIIFE 745

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537203|ref|XP_002509668.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549567|gb|EEF51055.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/187 (62%), Positives = 138/187 (73%), Gaps = 3/187 (1%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT D VNL G+PI+DERLL AD+ A GAGHVNPS+A+DPGLV+DIQPDDYIPYLCGL 
Sbjct: 571 IMTTADTVNLGGQPIVDERLLSADVLATGAGHVNPSKASDPGLVYDIQPDDYIPYLCGLG 630

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
           YTDR+I  +VQ KVKCSE+ SI EAQLNYPSFS+  G+  Q YTRTVTNVG   S Y   
Sbjct: 631 YTDRDITYIVQYKVKCSEVGSIPEAQLNYPSFSIVFGAKTQIYTRTVTNVGPATSSYTVS 690

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
           +  P GV+V VTPS + F +  Q A+++VTF  T   G     P  QGY+KW SDQHSVR
Sbjct: 691 VAPPPGVDVTVTPSKIAFTQVKQTATYSVTFTNT---GKGYSDPSVQGYLKWDSDQHSVR 747

Query: 181 IPLVVIF 187
            P+ V+F
Sbjct: 748 SPISVVF 754

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491338|gb|AFK33735.1| unknown [Medicago truncatula]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 143/187 (76%), Gaps = 1/187 (0%)

Query: 2   MTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNY 61
           MTT + +NL G PI+D+RLLPADIFA GAGHVNP +ANDPGLV+DI+P+DY+PYLCGL Y
Sbjct: 1   MTTANTLNLGGIPILDQRLLPADIFATGAGHVNPVKANDPGLVYDIEPEDYVPYLCGLGY 60

Query: 62  TDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSLI 121
           +D+EI ++VQRKVKCS + SI EAQLNYPSFS+ LGS +Q YTRT+TNVG  NS+YK  +
Sbjct: 61  SDKEIEVIVQRKVKCSNVKSIPEAQLNYPSFSILLGSDSQYYTRTLTNVGFANSIYKVEL 120

Query: 122 FVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRI 181
            VP  + + V PS + F E N+K SF++ F       NR+   FAQG + W SD+H+VRI
Sbjct: 121 EVPLALGMSVNPSEITFTEVNEKVSFSIEFI-PQIKENRRSQTFAQGSLTWVSDKHAVRI 179

Query: 182 PLVVIFE 188
           P+ VIF+
Sbjct: 180 PISVIFK 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3413481|emb|CAA07250.1| serine protease [Solanum lycopersicum]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 143/188 (76%), Gaps = 4/188 (2%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           MMTT D +NL   PI+DERLLPADI+AIGAGHVNPSRANDPGLV+D   +DY+PYLCGLN
Sbjct: 561 MMTTADTLNLANSPILDERLLPADIYAIGAGHVNPSRANDPGLVYDTPFEDYVPYLCGLN 620

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSL-TLGSGAQTYTRTVTNVGQPNSLYKS 119
           YT+R++  L+QRKV CSE+ SI EAQLNYPSFS+  LGS  QTYTRTVTNVG   S YK 
Sbjct: 621 YTNRQVGNLLQRKVNCSEVKSILEAQLNYPSFSIYDLGSTPQTYTRTVTNVGDAKSSYKV 680

Query: 120 LIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSV 179
            +  P+GV +EV PS L F+E NQK ++ VTF +T+   N  +    +G++KW+S++HSV
Sbjct: 681 EVASPEGVAIEVEPSELNFSELNQKLTYQVTFSKTA---NSSNTEVIEGFLKWTSNRHSV 737

Query: 180 RIPLVVIF 187
           R P+ ++ 
Sbjct: 738 RSPIALLL 745

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481819|ref|XP_003611195.1| Subtilisin-like serine protease [Medicago truncatula] gi|355512530|gb|AES94153.1| Subtilisin-like serine protease [Medicago truncatula]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 143/188 (76%), Gaps = 1/188 (0%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT + +NL G PI+D+RLLPADIFA GAGHVNP +ANDPGLV+DI+P+DY+PYLCGL 
Sbjct: 570 IMTTANTLNLGGIPILDQRLLPADIFATGAGHVNPVKANDPGLVYDIEPEDYVPYLCGLG 629

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
           Y+D+EI ++VQRKVKCS + SI EAQLNYPSFS+ LGS +Q YTRT+TNVG  NS YK  
Sbjct: 630 YSDKEIEVIVQRKVKCSNVKSIPEAQLNYPSFSILLGSDSQYYTRTLTNVGFANSTYKVE 689

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
           + VP  + + V PS + F E N+K SF++ F       NR+   FAQG + W SD+H+VR
Sbjct: 690 LEVPLALGMSVNPSEITFTEVNEKVSFSIEF-IPQIKENRRSQTFAQGSLTWVSDKHAVR 748

Query: 181 IPLVVIFE 188
           IP+ VIF+
Sbjct: 749 IPISVIFK 756

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426710|ref|XP_002275471.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 142/188 (75%), Gaps = 3/188 (1%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT D++N+ GKPI+DERLLPADIFA GAGHVNPSRANDPGLV+DI+PDDYIPYLCGL 
Sbjct: 571 IMTTADLLNVGGKPIVDERLLPADIFATGAGHVNPSRANDPGLVYDIEPDDYIPYLCGLG 630

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
           YTD E+ IL  R +KCSE SSI E +LNYPSFS+ LG   QT+TRTVTNVG+  S Y   
Sbjct: 631 YTDTEVGILAHRSIKCSEESSIPEGELNYPSFSVALGP-PQTFTRTVTNVGEAYSSYTVT 689

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
             VPQGV+V V P  L F++ NQK +++VTF   S   + +   FAQGY+KW S +HSV 
Sbjct: 690 AIVPQGVDVSVNPDKLYFSKVNQKLTYSVTFSHNSS--SGKSSKFAQGYLKWVSGKHSVG 747

Query: 181 IPLVVIFE 188
            P+ ++F+
Sbjct: 748 SPISIMFK 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071646|ref|XP_002303548.1| predicted protein [Populus trichocarpa] gi|222840980|gb|EEE78527.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 138/188 (73%), Gaps = 4/188 (2%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT ++ NL G PI D+  +P D+F IG+GHVNP++A+DPGLV+DIQPDDYIPYLCGL 
Sbjct: 515 IMTTANLTNLGGMPITDQFFVPVDVFGIGSGHVNPTKADDPGLVYDIQPDDYIPYLCGLG 574

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
           Y D  I I+VQR V CS  SSI EAQLNYPSFS+ LGSG Q YTRTVTNVG   S Y + 
Sbjct: 575 YNDTAIGIIVQRPVTCSNSSSIPEAQLNYPSFSIKLGSGPQAYTRTVTNVGPLKSSYIAE 634

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
           I  PQGV+V+VTPS ++F   + KA+++VTF RT+       +PFAQGY+ W S  H VR
Sbjct: 635 IISPQGVDVKVTPSAIEFGGGSSKATYSVTFTRTA----NVKVPFAQGYLNWVSADHVVR 690

Query: 181 IPLVVIFE 188
            P+ VIFE
Sbjct: 691 SPIAVIFE 698

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536267|ref|NP_001233982.1| subtilisin-like protease precursor [Solanum lycopersicum] gi|2230959|emb|CAA71234.1| subtilisin-like protease [Solanum lycopersicum] gi|4200336|emb|CAA76725.1| P69B protein [Solanum lycopersicum]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 143/187 (76%), Gaps = 4/187 (2%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           MMTT D +NL   PI+DERLLPADI+AIGAGHVNPSRANDPGLV+D   +DY+PYLCGL 
Sbjct: 560 MMTTADTLNLANSPILDERLLPADIYAIGAGHVNPSRANDPGLVYDTPFEDYVPYLCGLK 619

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSL-TLGSGAQTYTRTVTNVGQPNSLYKS 119
           YTD+++  L+QR+V CSE+ SI EAQLNYPSFS+  LGS  QTYTRTVTNVG   S YK 
Sbjct: 620 YTDQQVGNLIQRRVNCSEVKSILEAQLNYPSFSIFGLGSTPQTYTRTVTNVGDATSSYKV 679

Query: 120 LIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSV 179
            +  P+GV +EV PS L F+E NQK ++ VTF +T+   N + +   +G++KW+S++HSV
Sbjct: 680 EVASPEGVAIEVEPSELNFSELNQKLTYQVTFSKTTNSSNPEVI---EGFLKWTSNRHSV 736

Query: 180 RIPLVVI 186
           R P+ V+
Sbjct: 737 RSPIAVV 743

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
UNIPROTKB|Q8RVC2	759	OSJNBb0005J14.3 "Putative seri	0.962	0.238	0.448	4.6e-38
UNIPROTKB|Q8H047	754	OJ1263H11.8 "Subtilisin N-term	0.962	0.240	0.432	3.2e-36
UNIPROTKB|Q7XPR8	760	OSJNBa0065O17.13 "Os04g0559000	0.962	0.238	0.440	5.1e-35
UNIPROTKB|Q6ESH8	791	P0461B08.17 "Subtilisin-like s	0.973	0.231	0.389	2.9e-32
TAIR|locus:2020245	775	SDD1 "AT1G04110" [Arabidopsis	0.968	0.234	0.419	4.2e-31
TAIR|locus:2168434	732	SBT4.13 "AT5G59120" [Arabidops	0.925	0.237	0.411	4.1e-29
TAIR|locus:2158187	757	ARA12 [Arabidopsis thaliana (t	0.968	0.240	0.385	5.7e-29
TAIR|locus:2153291	736	SBT4.12 "AT5G59090" [Arabidops	0.925	0.236	0.406	3e-28
TAIR|locus:2025457	774	SBTI1.1 "AT1G01900" [Arabidops	0.984	0.239	0.380	3.4e-28
TAIR|locus:2168444	732	AT5G59130 "AT5G59130" [Arabido	0.819	0.210	0.427	4.3e-28

UNIPROTKB|Q8RVC2 OSJNBb0005J14.3 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 415 (151.1 bits), Expect = 4.6e-38, P = 4.6e-38
 Identities = 83/185 (44%), Positives = 122/185 (65%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
             +MTT+D V+  G PI DE+   A  +A+GAG+VNP+ A DPGLV+D+  DDYIPYLCGL 
Sbjct:   574 IMTTSDAVDRTGVPIKDEQYRHATFYAMGAGYVNPALAFDPGLVYDLHADDYIPYLCGLG 633

Query:    61 YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
               D  +  +  R V CS++ +I EA+LNYPS  + L +   T  RTVTNVG+P+S+Y ++
Sbjct:   634 IGDDGVKEIAHRPVTCSDVKTITEAELNYPSLVVNLLAQPITVNRTVTNVGKPSSVYTAV 693

Query:   121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
             + +P+ V V V P  L+F E  +  SF VT +   + G + ++  A+G +KW SD+H VR
Sbjct:   694 VDMPKDVSVIVQPPMLRFTELKEMQSFTVTVR---WAG-QPNVAGAEGNLKWVSDEHIVR 749

Query:   181 IPLVV 185
              P+++
Sbjct:   750 SPIII 754

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q8H047 OJ1263H11.8 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 398 (145.2 bits), Expect = 3.2e-36, P = 3.2e-36
 Identities = 80/185 (43%), Positives = 121/185 (65%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
             +MT++D+ + +G PI DE+   A  + +GAG+VNPSRA DPGLV+D+  +DYI YLCGL 
Sbjct:   567 IMTSSDVADHDGVPIKDEQYRSASFYTMGAGYVNPSRAVDPGLVYDLHTNDYIAYLCGLG 626

Query:    61 YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
               D  +  +  R+V C+++ +I EA+LNYPS  + L S   T  R VTNVG+ NS+Y ++
Sbjct:   627 IGDDGVKEITHRRVSCAKLKAITEAELNYPSLVVKLLSQPITVHRIVTNVGKANSVYTAV 686

Query:   121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVR 180
             + +P+ V V V P  L+F+ A +K SF VT +   + G +  +   +G +KW SD+H VR
Sbjct:   687 VDMPKNVAVTVHPPLLRFSRAYEKQSFTVTVR---WAG-QPAVAGVEGNLKWVSDEHVVR 742

Query:   181 IPLVV 185
              P+V+
Sbjct:   743 SPIVI 747

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q7XPR8 OSJNBa0065O17.13 "Os04g0559000 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 387 (141.3 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 85/193 (44%), Positives = 114/193 (59%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
             +MTT DI +  G  I+DE+  PA+ FA GAGHVNP RA DPGLV+DI P DY+ YLCGL 
Sbjct:   573 IMTTADITDRSGNQILDEQRAPANFFATGAGHVNPERAADPGLVYDIAPCDYVGYLCGL- 631

Query:    61 YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTL-----GSGAQTYTRTVTNVGQ-PN 114
             YT +E++++ +R V CS +++I E QLNYPS S+        S      RT  NVG+ P+
Sbjct:   632 YTSQEVSVIARRPVNCSAVAAIPEHQLNYPSISVRFPRAWNSSEPVLVRRTAKNVGEVPS 691

Query:   115 SLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSS 174
               Y ++  +   V V V P TL+F   NQ+  F V       GG R      QG ++W S
Sbjct:   692 EYYAAVDMLDTTVTVRVFPRTLRFTGVNQEKDFTVVVW-PGQGGAR----VVQGAVRWVS 746

Query:   175 DQHSVRIPLVVIF 187
             + H+VR P+ V F
Sbjct:   747 ETHTVRSPVSVTF 759

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q6ESH8 P0461B08.17 "Subtilisin-like serine protease" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 362 (132.5 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 74/190 (38%), Positives = 119/190 (62%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
             MMTT D ++   +PI D++   A++F +GAG +NP++A +PGLV+D+   DY+P+LCGL 
Sbjct:   586 MMTTADTLDRRRRPITDQKGNNANMFGLGAGFINPTKAMNPGLVYDLTAQDYVPFLCGLG 645

Query:    61 YTDREIAILVQR--KVKCSEISSIKEAQLNYPSFSLTLGSGAQ--TYTRTVTNVG-QPNS 115
             Y+D E++ ++     V C ++ ++++  LNYPS ++ L       + +R VTNVG +  +
Sbjct:   646 YSDHEVSSIIHPAPSVSCKQLPAVEQKDLNYPSITVFLDREPYVVSVSRAVTNVGPRGKA 705

Query:   116 LYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSD 175
             +Y + + +P  V V VTP TL+F + NQ   F VTF R + GG  +    A+G ++W S 
Sbjct:   706 VYAAKVDMPATVLVTVTPDTLRFKKVNQVRKFTVTF-RGANGGPMKG-GVAEGQLRWVSP 763

Query:   176 QHSVRIPLVV 185
              H VR P+VV
Sbjct:   764 DHVVRSPIVV 773

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

TAIR|locus:2020245 SDD1 "AT1G04110" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 81/193 (41%), Positives = 110/193 (56%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
             +MTT D+ + +GK I D    PA +FAIGAGHVNP +A +PGLV++IQP DYI YLC L 
Sbjct:   581 LMTTADLYDRQGKAIKDGNK-PAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLG 639

Query:    61 YTDREIAILVQRKVKCSEISSIKEA-QLNYPSFSLTLGSGAQT--YTRTVTNVGQPNSLY 117
             +T  +I  +  + V C+ I        LNYPS ++    G  T   TR VTNVG PNS+Y
Sbjct:   640 FTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIY 699

Query:   118 KSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTF--KRTSYGGNRQDMPFAQGYIKWSSD 175
                +  P+G++V V P  L F   +Q  S+ V F  K+ + GG      FAQG + W + 
Sbjct:   700 SVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVAS--FAQGQLTWVNS 757

Query:   176 QH---SVRIPLVV 185
              +    VR P+ V
Sbjct:   758 HNLMQRVRSPISV 770

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 79/192 (41%), Positives = 107/192 (55%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
             +MTT   VN  G  I          FA G+GHV+P  A++PGLV+++   D+I +LCG+N
Sbjct:   547 IMTTAWPVNATGTGIASTE------FAYGSGHVDPIAASNPGLVYELDKSDHIAFLCGMN 600

Query:    61 YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTL-GSGAQ---TYTRTVTNVGQPNSL 116
             YT + + ++    V CSE   I    LNYPS S  L GSG     T+ RT+TNVG PNS 
Sbjct:   601 YTSQVLKVISGETVTCSEAKKILPRNLNYPSMSAKLSGSGTTFTVTFNRTLTNVGTPNST 660

Query:   117 YKSLIFVPQG--VEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQ-DMPFAQGYIKWS 173
             Y S +    G  ++V++TPS L F   N+K SF VT      G N   ++P +   I WS
Sbjct:   661 YTSKVVAGHGSKLDVKITPSVLSFKTVNEKQSFTVTVT----GSNLDSEVPSSANLI-WS 715

Query:   174 SDQHSVRIPLVV 185
                H+VR P+VV
Sbjct:   716 DGTHNVRSPIVV 727

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 5.7e-29, P = 5.7e-29
 Identities = 72/187 (38%), Positives = 107/187 (57%)

Query:     1 MMTTTDIVNLEGKPIIDERL-LPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGL 59
             +MTT      +GKP++D     P+  F  GAGHV+P+ A +PGL++D+  +DY+ +LC L
Sbjct:   571 LMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCAL 630

Query:    60 NYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTL-GSGAQTYTRTVTNVGQPNSLYK 118
             NYT  +I  + +R   C    S   A LNYPSF++ + G GA  YTRTVT+VG   +   
Sbjct:   631 NYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSV 690

Query:   119 SLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHS 178
              +     GV++ V P+ L F EAN+K S+ VTF   S   ++     + G I+WS  +H 
Sbjct:   691 KVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDS---SKPSGSNSFGSIEWSDGKHV 747

Query:   179 VRIPLVV 185
             V  P+ +
Sbjct:   748 VGSPVAI 754

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0048359 "mucilage metabolic process involved seed coat development" evidence=IMP

GO:0080001 "mucilage extrusion from seed coat" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.0e-28, P = 3.0e-28
 Identities = 78/192 (40%), Positives = 108/192 (56%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
             +MTT   V  +G+ I          FA GAGHV+P  A +PGLV+++   D+I +LCG+N
Sbjct:   548 IMTTAWPVKAKGRGIASTE------FAYGAGHVDPMAALNPGLVYELDKADHIAFLCGMN 601

Query:    61 YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQ-----TYTRTVTNVGQPNS 115
             YT + + I+    VKCS+ + I    LNYPS S  L SG       T+ RT+TNVG PNS
Sbjct:   602 YTSKTLKIISGDTVKCSKKNKILPRNLNYPSMSAKL-SGTDSTFSVTFNRTLTNVGTPNS 660

Query:   116 LYKSLIFVPQG--VEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWS 173
              YKS +    G  + ++VTPS L F   N+K SF+VT   +       ++P +   I WS
Sbjct:   661 TYKSKVVAGHGSKLSIKVTPSVLYFKTVNEKQSFSVTVTGSDVDS---EVPSSANLI-WS 716

Query:   174 SDQHSVRIPLVV 185
                H+VR P+VV
Sbjct:   717 DGTHNVRSPIVV 728

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2025457 SBTI1.1 "AT1G01900" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-28, P = 3.4e-28
 Identities = 75/197 (38%), Positives = 107/197 (54%)

Query:     1 MMTTTDIVNLEGKPIIDERLLPAD----IFAIGAGHVNPSRANDPGLVFDIQPDDYIPYL 56
             +MTT  I +   +PI D     A+     FA GAG+V+P+RA DPGLV+D    DY+ YL
Sbjct:   581 IMTTARITDNRNRPIGDRGAAGAESAATAFAFGAGNVDPTRAVDPGLVYDTSTVDYLNYL 640

Query:    57 CGLNYTDREIAILVQRKVKC-SEISSIKEAQLNYPSFSLTLGSGAQT----YTRTVTNVG 111
             C LNYT   I +       C S    +    LNYPSF++ L +GA      Y RTVTNVG
Sbjct:   641 CSLNYTSERILLFSGTNYTCASNAVVLSPGDLNYPSFAVNLVNGANLKTVRYKRTVTNVG 700

Query:   112 QPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIK 171
              P   Y   +  P+GV+V V P  L+F +A ++ S+ VT+   +   +R     + G + 
Sbjct:   701 SPTCEYMVHVEEPKGVKVRVEPKVLKFQKARERLSYTVTYDAEA---SRNSSSSSFGVLV 757

Query:   172 WSSDQHSVRIPLVVIFE 188
             W  D+++VR P+ V +E
Sbjct:   758 WICDKYNVRSPIAVTWE 774

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0031012 "extracellular matrix" evidence=IDA

TAIR|locus:2168444 AT5G59130 "AT5G59130" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
 Identities = 71/166 (42%), Positives = 93/166 (56%)

Query:    26 FAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEISSIKEA 85
             FA GAGHV+P  A +PGLV++I   DY  +LCG+NY    + ++    V CSE   I   
Sbjct:   562 FAYGAGHVDPIAATNPGLVYEITKTDYFAFLCGMNYNKTTVKLISGEAVTCSE--KISPR 619

Query:    86 QLNYPSFSLTL-GSGAQ---TYTRTVTNVGQPNSLYKSLIFVPQG--VEVEVTPSTLQFN 139
              LNYPS S  L GS      T+ RTVTNVG PNS YKS + +  G  + V+V+PS L   
Sbjct:   620 NLNYPSMSAKLSGSNISFIVTFNRTVTNVGTPNSTYKSKVVLNHGSKLNVKVSPSVLSMK 679

Query:   140 EANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVV 185
               N+K SF VT   +       ++P +   I WS   H+VR P+VV
Sbjct:   680 SMNEKQSFTVTVSASEL---HSELPSSANLI-WSDGTHNVRSPIVV 721

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	97.24
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	93.53
PF14874	102	PapD-like: Flagellar-associated PapD-like	90.93
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	87.66
smart00635	81	BID_2 Bacterial Ig-like domain 2.	84.1
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	81.81

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.24  E-value=0.008  Score=44.80  Aligned_cols=87  Identities=24%  Similarity=0.397  Sum_probs=54.3

Q ss_pred             EeecCccEEEEEEEEeecCCCceEEEEEEC--------CCCe-----------EEEEEcCEEEEeeCCeEEEEEEEEE-e
Q 039166           94 LTLGSGAQTYTRTVTNVGQPNSLYKSLIFV--------PQGV-----------EVEVTPSTLQFNEANQKASFAVTFK-R  153 (188)
Q Consensus        94 v~~~~~~~tv~RTVTNVg~~~~tY~a~v~~--------p~gv-----------~V~V~P~~l~f~~~ge~~sf~Vt~~-~  153 (188)
                      +.......+++=+++|.|+..-+|+++...        ..|.           .+...|..++..+ ||++.++|+|+ .
T Consensus         3 L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p   81 (112)
T PF06280_consen    3 LKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPP   81 (112)
T ss_dssp             EEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--
T ss_pred             ccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEeh
Confidence            333444567777888888888888776541        1121           6778888999977 99999999999 4


Q ss_pred             ccCCCCCCCCCeEEEEEEEEc-CCc-eEEeeE
Q 039166          154 TSYGGNRQDMPFAQGYIKWSS-DQH-SVRIPL  183 (188)
Q Consensus       154 ~~~~~~~~~~~~~fG~l~Wsd-~~h-~VrsPi  183 (188)
                      .....  ....+..|.|.+++ ..+ .++.|.
T Consensus        82 ~~~~~--~~~~~~eG~I~~~~~~~~~~lsIPy  111 (112)
T PF06280_consen   82 SGLDA--SNGPFYEGFITFKSSDGEPDLSIPY  111 (112)
T ss_dssp             GGGHH--TT-EEEEEEEEEESSTTSEEEEEEE
T ss_pred             hcCCc--ccCCEEEEEEEEEcCCCCEEEEeee
Confidence            31100  13578999999995 344 788885

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=93.53  E-value=0.42  Score=33.16  Aligned_cols=53  Identities=23%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             cEEEEEEEEeecCCC-ceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166          100 AQTYTRTVTNVGQPN-SLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK  152 (188)
Q Consensus       100 ~~tv~RTVTNVg~~~-~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~  152 (188)
                      ..+++=+|+|-|... ...++++..|+|-.+.+.|..+.-=+.||+++++++++
T Consensus         6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~   59 (78)
T PF10633_consen    6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVT   59 (78)
T ss_dssp             EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEE
T ss_pred             EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEE
Confidence            567888999999754 56888899999999989999886334599999999998

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=90.93  E-value=4.5  Score=28.94  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             EEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCCeEEEEEEEEcCCceE
Q 039166          101 QTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMPFAQGYIKWSSDQHSV  179 (188)
Q Consensus       101 ~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~~~fG~l~Wsd~~h~V  179 (188)
                      .+.+=+++|.|..+..|++.......-.++|+|..=.+.+ |++.++.|+|. ...      . ...-+.|.-......+
T Consensus        22 ~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~------~-g~~~~~l~i~~e~~~~   93 (102)
T PF14874_consen   22 YSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKP------L-GDYEGSLVITTEGGSF   93 (102)
T ss_pred             EEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCC------C-ceEEEEEEEEECCeEE
Confidence            4445567999999999998764423455677887766766 99999999998 433      2 2345777776555677


Q ss_pred             EeeEEEE
Q 039166          180 RIPLVVI  186 (188)
Q Consensus       180 rsPi~v~  186 (188)
                      ..||-+.
T Consensus        94 ~i~v~a~  100 (102)
T PF14874_consen   94 EIPVKAE  100 (102)
T ss_pred             EEEEEEE
Confidence            7777654

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=87.66  E-value=2.6  Score=31.40  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=37.2

Q ss_pred             EEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166          101 QTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK  152 (188)
Q Consensus       101 ~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~  152 (188)
                      -.++=.++|-...+-.|+.++..++|+++......+...+ ||+..+.|.+.
T Consensus        33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~   83 (118)
T PF11614_consen   33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVT   83 (118)
T ss_dssp             EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEE
T ss_pred             EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEE
Confidence            4577789999999999999999989999966558999977 99999999998

>smart00635 BID_2 Bacterial Ig-like domain 2

Probab=84.10  E-value=4.7  Score=28.05  Aligned_cols=39  Identities=23%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             EEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCCeEEEEEEEEcCC
Q 039166          128 EVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMPFAQGYIKWSSDQ  176 (188)
Q Consensus       128 ~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~~~fG~l~Wsd~~  176 (188)
                      .|++.|..+++.. |+++.|++++. ...       ..  ...+.|+...
T Consensus         4 ~i~i~p~~~~l~~-G~~~~l~a~~~~~~~-------~~--~~~v~w~Ssn   43 (81)
T smart00635        4 SVTVTPTTASVKK-GLTLQLTATVTPSSA-------KV--TGKVTWTSSN   43 (81)
T ss_pred             EEEEeCCeeEEeC-CCeEEEEEEEECCCC-------Cc--cceEEEEECC
Confidence            6789999999976 99999999987 322       11  5678898543

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=81.81  E-value=14  Score=27.37  Aligned_cols=52  Identities=15%  Similarity=0.273  Sum_probs=39.4

Q ss_pred             ccEEEEEEEEeecCCCceEEEEEEC---CCC----eEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166           99 GAQTYTRTVTNVGQPNSLYKSLIFV---PQG----VEVEVTPSTLQFNEANQKASFAVTFK  152 (188)
Q Consensus        99 ~~~tv~RTVTNVg~~~~tY~a~v~~---p~g----v~V~V~P~~l~f~~~ge~~sf~Vt~~  152 (188)
                      +..+..=+|+|-|+.+-.+.+.+..   ..+    -.+-|+|..+.+.+ |+++.+.| +.
T Consensus        14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~   72 (122)
T PF00345_consen   14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YR   72 (122)
T ss_dssp             TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EE
T ss_pred             CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-Ee
Confidence            3346677899999866777777764   111    15779999999988 99999999 76

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
3i6s_A	649	Crystal Structure Of The Plant Subtilisin-Like Prot		2e-25
3vta_A	621	Crystal Structure Of Cucumisin, A Subtilisin-Like E		6e-23

>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 1   MMTTTDIVNLEGKPIID-ERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGL 59
           MMTT D ++   KPI D +    A    +GAGHV+P+RA DPGLV+D  P DY+  LC L
Sbjct: 455 MMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSL 514
Query: 60  NYTDREIAILVQRKVKCSEISSIKEAQLNYPSF--------SLTLGSGAQTYTRTVTNVG 111
           N+T+ +   +   +   S   S   A LNYPSF        + TL    Q + RTVTNVG
Sbjct: 515 NFTEEQFKTIA--RSSASHNCSNPSADLNYPSFIALYSIEGNFTLLE--QKFKRTVTNVG 570
Query: 112 QPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIK 171
           +  + YK+ +  P+   + V+P  L F   N+K S+ +T +     G  +++    G I 
Sbjct: 571 KGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNV----GSIT 626
Query: 172 W--SSDQHSVRIPLV 184
           W   +  HSVR P+V
Sbjct: 627 WVEQNGNHSVRSPIV 641

>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 16  IDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVK 75
           ++ R  P   FA G+GHVNP +A  PGLV+D    DY+ +LCG  Y  + +  +      
Sbjct: 451 MNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA 510
Query: 76  CSEISSIKEAQLNYPSFSLTLGSGAQT----YTRTVTNVGQPNSLYKSLIFVPQGVEVEV 131
           C+  ++ +   LNYPSF L++ S +QT    + RT+T+V    S Y+++I  PQG+ + V
Sbjct: 511 CTSGNTGRVWDLNYPSFGLSV-SPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISV 569
Query: 132 TPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQHSVRIPLVV 185
            P+ L FN    + SF +T + +  G            + WS   H VR P+ +
Sbjct: 570 NPNVLSFNGLGDRKSFTLTVRGSIKGF------VVSASLVWSDGVHYVRSPITI 617

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	4e-59
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	4e-59
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	5e-19

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621

 Score =  193 bits (492), Expect = 4e-59
 Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 17/188 (9%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +MTT   +N    P  +        FA G+GHVNP +A  PGLV+D    DY+ +LCG  
Sbjct: 444 LMTTASPMNARFNPQAE--------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQG 495

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLG---SGAQTYTRTVTNVGQPNSLY 117
           Y  + +  +      C+  ++ +   LNYPSF L++    +  Q + RT+T+V    S Y
Sbjct: 496 YNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTY 555

Query: 118 KSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWSSDQH 177
           +++I  PQG+ + V P+ L FN    + SF +T + +  G            + WS   H
Sbjct: 556 RAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGF------VVSASLVWSDGVH 609

Query: 178 SVRIPLVV 185
            VR P+ +
Sbjct: 610 YVRSPITI 617

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649

 Score =  194 bits (493), Expect = 4e-59
 Identities = 69/194 (35%), Positives = 95/194 (48%), Gaps = 15/194 (7%)

Query: 1   MMTTTDIVNLEGKPIIDE-RLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGL 59
           MMTT D ++   KPI D      A    +GAGHV+P+RA DPGLV+D  P DY+  LC L
Sbjct: 455 MMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSL 514

Query: 60  NYTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLG------SGAQTYTRTVTNVGQP 113
           N+T+ +   + +     +   S   A LNYPSF              Q + RTVTNVG+ 
Sbjct: 515 NFTEEQFKTIARSSASHN--CSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKG 572

Query: 114 NSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKWS 173
            + YK+ +  P+   + V+P  L F   N+K S+ +T +     G         G I W 
Sbjct: 573 AATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQS----RNVGSITWV 628

Query: 174 SD--QHSVRIPLVV 185
                HSVR P+V 
Sbjct: 629 EQNGNHSVRSPIVT 642

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score = 83.2 bits (205), Expect = 5e-19
 Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 31/185 (16%)

Query: 1   MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLN 60
           +M++   +  E +               GAG V+  +A+   +   +   D       LN
Sbjct: 444 LMSSATALYDEDEKA------YFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLN 495

Query: 61  YTDREIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQPNSLYKSL 120
               +  + V    K       K  +L Y +   T     + +      V    S  K  
Sbjct: 496 NVSDKFEVTVNVHNKSD-----KPQELYYQATVQTDKVDGKHFA-LAPKVLYETSWQKIT 549

Query: 121 IFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYGGNRQDMPFAQGYIKW---SSDQH 177
           I      +V V     +F++                        F +G++++    + + 
Sbjct: 550 IPANSSKQVTVPIDASRFSKDLLAQMKNG--------------YFLEGFVRFKQDPTKEE 595

Query: 178 SVRIP 182
            + IP
Sbjct: 596 LMSIP 600

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	100.0
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	100.0
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	99.81
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	97.05
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	93.43

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=100.00  E-value=1.8e-56  Score=421.59  Aligned_cols=179  Identities=39%  Similarity=0.659  Sum_probs=161.9

Q ss_pred             CeeeeeeccCCCCccccCC-CCCCCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCcceeEEeecccce--ec
Q 039166            1 MMTTTDIVNLEGKPIIDER-LLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVK--CS   77 (188)
Q Consensus         1 lMTTA~~~d~~~~~i~~~~-~~~atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~~~i~~it~~~~~--C~   77 (188)
                      |||||+.+|+.+++|+++. ..+++||+||+|||||.+|+|||||||++++||++|||++||+.++|+.|++++++  |+
T Consensus       455 LmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~  534 (649)
T 3i6s_A          455 MMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCS  534 (649)
T ss_dssp             HHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CC
T ss_pred             HhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCC
Confidence            7999999999999999874 67999999999999999999999999999999999999999999999999998887  97


Q ss_pred             cCCccCccccCccceEEee-cCcc-----EEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEE
Q 039166           78 EISSIKEAQLNYPSFSLTL-GSGA-----QTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTF  151 (188)
Q Consensus        78 ~~~~~~~~dLNyPSi~v~~-~~~~-----~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~  151 (188)
                      .    .+.|||||||++++ +.+.     ++|+|||||||+.+++|+|+|+.|+|++|+|+|++|+|++.|||++|+|+|
T Consensus       535 ~----~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~  610 (649)
T 3i6s_A          535 N----PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI  610 (649)
T ss_dssp             C----CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEE
T ss_pred             C----chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEE
Confidence            5    46799999999998 6666     899999999999999999999999999999999999999889999999999


Q ss_pred             E-eccCCCCCCCCCeEEEEEEEEc--CCceEEeeEEEEeC
Q 039166          152 K-RTSYGGNRQDMPFAQGYIKWSS--DQHSVRIPLVVIFE  188 (188)
Q Consensus       152 ~-~~~~~~~~~~~~~~fG~l~Wsd--~~h~VrsPi~v~~~  188 (188)
                      + ....     .+.|.||+|+|+|  ++|.|||||+|++.
T Consensus       611 ~~~~~~-----~~~~~fg~l~w~~~~~~h~vrsPi~v~~~  645 (649)
T 3i6s_A          611 RYIGDE-----GQSRNVGSITWVEQNGNHSVRSPIVTSPI  645 (649)
T ss_dssp             EECCC--------CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             EecccC-----CCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence            9 4332     4578999999998  99999999999873

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=100.00  E-value=1.2e-51  Score=386.43  Aligned_cols=173  Identities=34%  Similarity=0.605  Sum_probs=132.3

Q ss_pred             CeeeeeeccCCCCccccCCCCCCCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCcceeEEeecccceeccCC
Q 039166            1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEIS   80 (188)
Q Consensus         1 lMTTA~~~d~~~~~i~~~~~~~atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~~~i~~it~~~~~C~~~~   80 (188)
                      |||||..+|+.+.        +++||+||||||||.+|+|||||||++.+||+.|||++||+..+|+.++++...|+...
T Consensus       444 LmtTA~~~~~~~~--------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~  515 (621)
T 3vta_A          444 LMTTASPMNARFN--------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN  515 (621)
T ss_dssp             HHHTCBCCCTTTC--------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC---------------------------
T ss_pred             HHhcCCcccccCC--------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCC
Confidence            7999998877654        67899999999999999999999999999999999999999999999999988998765


Q ss_pred             ccCccccCccceEEee---cCccEEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEEeccCC
Q 039166           81 SIKEAQLNYPSFSLTL---GSGAQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFKRTSYG  157 (188)
Q Consensus        81 ~~~~~dLNyPSi~v~~---~~~~~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~~~~~~  157 (188)
                      .....|||||||++..   +..+++|+|||||||+..++|+++|+.|+|++|+|+|++|+|++.|||++|+|+|+...  
T Consensus       516 ~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~~--  593 (621)
T 3vta_A          516 TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--  593 (621)
T ss_dssp             --CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEECC--
T ss_pred             cCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEecC--
Confidence            5677899999999964   45688999999999999999999999999999999999999999999999999998322  


Q ss_pred             CCCCCCCeEEEEEEEEcCCceEEeeEEEEe
Q 039166          158 GNRQDMPFAQGYIKWSSDQHSVRIPLVVIF  187 (188)
Q Consensus       158 ~~~~~~~~~fG~l~Wsd~~h~VrsPi~v~~  187 (188)
                          .+.|.||+|+|+|++|.|||||+|+.
T Consensus       594 ----~~~~~~g~l~w~d~~h~Vr~Pi~v~~  619 (621)
T 3vta_A          594 ----KGFVVSASLVWSDGVHYVRSPITITS  619 (621)
T ss_dssp             ----CSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred             ----CCceEEEEEEEEcCCEEEEeCEEEEE
Confidence                45799999999999999999999985

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=99.81  E-value=1.3e-20  Score=183.29  Aligned_cols=144  Identities=17%  Similarity=0.235  Sum_probs=108.3

Q ss_pred             CeeeeeeccCCCCccccCCCCCCCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCcceeEEeecccceeccCC
Q 039166            1 MMTTTDIVNLEGKPIIDERLLPADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTDREIAILVQRKVKCSEIS   80 (188)
Q Consensus         1 lMTTA~~~d~~~~~i~~~~~~~atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~~~i~~it~~~~~C~~~~   80 (188)
                      ||+||..+++.+      ....++||++|+|||||.+|++|++           |||+.+|+..+|              
T Consensus       444 L~~TA~~~~~~~------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~i--------------  492 (926)
T 1xf1_A          444 LMSSATALYDED------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSKV--------------  492 (926)
T ss_dssp             HHHHSBCCEEGG------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSCE--------------
T ss_pred             HHhcCCCcccCC------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCccee--------------
Confidence            699999776532      1235679999999999999999965           789877654322              


Q ss_pred             ccCccccCccceEEeecCccEEEEEEEEeecCC--CceEEEEEEC--CCCeEEEEEcCEEEEeeC-------CeEEEEEE
Q 039166           81 SIKEAQLNYPSFSLTLGSGAQTYTRTVTNVGQP--NSLYKSLIFV--PQGVEVEVTPSTLQFNEA-------NQKASFAV  149 (188)
Q Consensus        81 ~~~~~dLNyPSi~v~~~~~~~tv~RTVTNVg~~--~~tY~a~v~~--p~gv~V~V~P~~l~f~~~-------ge~~sf~V  149 (188)
                                  .+..+....+++|||||+|+.  ..+|++++..  |.+..++|+|..|.|...       ||+++|+|
T Consensus       493 ------------~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~v  560 (926)
T 1xf1_A          493 ------------HLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTV  560 (926)
T ss_dssp             ------------EEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEE
T ss_pred             ------------eccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEE
Confidence                        223334568899999999974  4688888865  789999999999988876       99999999


Q ss_pred             EEE-eccCCC---CCCCCCeEEEEEEEE--cCCce-EEeeEEEEe
Q 039166          150 TFK-RTSYGG---NRQDMPFAQGYIKWS--SDQHS-VRIPLVVIF  187 (188)
Q Consensus       150 t~~-~~~~~~---~~~~~~~~fG~l~Ws--d~~h~-VrsPi~v~~  187 (188)
                      +|+ ......   .++.+.+.||+|+|+  ++.|. ||+|+++..
T Consensus       561 t~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~  605 (926)
T 1xf1_A          561 PIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR  605 (926)
T ss_dssp             EEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred             EEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence            999 411000   001446899999999  66665 999999863

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=97.05  E-value=0.00024  Score=71.60  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=82.3

Q ss_pred             CCccccCccccCCCCCCCCCeeecCCccchhhhcccCCCCc-ceeEEeecccceeccCCccCccccCccceEEeecCccE
Q 039166           23 ADIFAIGAGHVNPSRANDPGLVFDIQPDDYIPYLCGLNYTD-REIAILVQRKVKCSEISSIKEAQLNYPSFSLTLGSGAQ  101 (188)
Q Consensus        23 atpFd~GAG~vnp~~A~dPGLVyD~~~~DY~~fLC~~gy~~-~~i~~it~~~~~C~~~~~~~~~dLNyPSi~v~~~~~~~  101 (188)
                      ..++.+|.|.||+.+|++..+.|+..++||+.|+|..++.. ..|-  .+.. .|                     ....
T Consensus       505 ~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIy--lR~~-~~---------------------~~~~  560 (1354)
T 3lxu_X          505 VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIH--LRQG-VQ---------------------RNSI  560 (1354)
T ss_dssp             SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEE--ECSS-CC---------------------CSCE
T ss_pred             CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceE--Eecc-cc---------------------CCce
Confidence            45689999999999999999999999999999999988632 2221  1110 01                     1122


Q ss_pred             EEEEEEEeec------CC--CceE--EEEEE-CCCCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCCeEEEE
Q 039166          102 TYTRTVTNVG------QP--NSLY--KSLIF-VPQGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMPFAQGY  169 (188)
Q Consensus       102 tv~RTVTNVg------~~--~~tY--~a~v~-~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~~~fG~  169 (188)
                      .|+-+|+-+=      +.  ...+  ++.+. ..+-+.   -|+.|.+  .++.++|.|.+. +..      .....+++
T Consensus       561 ~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~~wv~---~p~~l~l--~~~~r~~~v~vDp~~L------~~G~h~~~  629 (1354)
T 3lxu_X          561 DYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQ---CGAFLDL--SYGTRSIAVRVDPTGL------QPGVHSAV  629 (1354)
T ss_dssp             EEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESSTTEE---ECSCEEC--TTSCEEEEEEECGGGC------CSEEEEEE
T ss_pred             EEEEEEeeeecCcccCChhhccceEEEEEEecCCCcee---cccceee--cCCCceEEEEECCCCC------CCcceeEE
Confidence            3333332221      11  1111  22222 222333   3888877  378889999999 655      33678999


Q ss_pred             EEEEc-----CCceEEeeEEEE
Q 039166          170 IKWSS-----DQHSVRIPLVVI  186 (188)
Q Consensus       170 l~Wsd-----~~h~VrsPi~v~  186 (188)
                      |..-|     .+...|.||.|.
T Consensus       630 v~~~D~~~~~~gp~f~ipvTv~  651 (1354)
T 3lxu_X          630 IRAYDTDCVQKGSLFEIPVTVV  651 (1354)
T ss_dssp             EEEEESSCTTSCCSEEEEEEEE
T ss_pred             EEEEEcCCcccCceEEeeEEEE
Confidence            98764     358999999875

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.43  E-value=0.52  Score=34.25  Aligned_cols=48  Identities=17%  Similarity=0.288  Sum_probs=39.5

Q ss_pred             cEEEEEEEEeecCCCceEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE
Q 039166          100 AQTYTRTVTNVGQPNSLYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK  152 (188)
Q Consensus       100 ~~tv~RTVTNVg~~~~tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~  152 (188)
                      ..+.+=.++|+|..+..|+.....  -+  +|+|+...+.+ ||++.++|+|.
T Consensus        42 ~~~~~~~l~N~g~~~~~f~~~~~~--~F--~i~P~~g~L~p-g~~~~i~V~F~   89 (122)
T 2ys4_A           42 STQKILLVRNIGNKNAVFHIKTCR--PF--SIEPAIGTLNV-GESMQLEVEFE   89 (122)
T ss_dssp             CEEEEEEEECCSSSCEEEEEECCT--TE--EEESSEEEECT-TCEEEEEEEEC
T ss_pred             eEEEEEEEEECCCCCEEEEEecCC--Ce--EEECCcCEECC-CCEEEEEEEEE
Confidence            556677789999988888876643  34  46899999987 99999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	94.71

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=94.71  E-value=0.24  Score=33.98  Aligned_cols=84  Identities=13%  Similarity=0.014  Sum_probs=55.5

Q ss_pred             cCccceEEeecCccEEEEEEEEeecCCCc-eEEEEEECCCCeEEEEEcCEEEEeeCCeEEEEEEEEE-eccCCCCCCCCC
Q 039166           87 LNYPSFSLTLGSGAQTYTRTVTNVGQPNS-LYKSLIFVPQGVEVEVTPSTLQFNEANQKASFAVTFK-RTSYGGNRQDMP  164 (188)
Q Consensus        87 LNyPSi~v~~~~~~~tv~RTVTNVg~~~~-tY~a~v~~p~gv~V~V~P~~l~f~~~ge~~sf~Vt~~-~~~~~~~~~~~~  164 (188)
                      |.-|++++.- ....+++=+|+|-|.... .-++.+..|+|-.++.  ....+.+ ||+++++++++ ....    ..+.
T Consensus         6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~--~~~~L~p-G~s~~~~~~Vt~p~~a----~~G~   77 (103)
T d1w8oa1           6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPLMP-GRQAKGQVTITVPAGT----TPGR   77 (103)
T ss_dssp             EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCBCT-TCEEEEEEEEECCTTC----CCEE
T ss_pred             ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccC--cceeeCC-CCcEEEEEEEECCCCC----CCce
Confidence            4456665532 346789999999997654 3567788999998754  4455665 99999999999 4332    2445


Q ss_pred             eEEEEEEEEcCCceE
Q 039166          165 FAQGYIKWSSDQHSV  179 (188)
Q Consensus       165 ~~fG~l~Wsd~~h~V  179 (188)
                      |.. .++.+++.+..
T Consensus        78 Y~i-~~~a~~~~~~~   91 (103)
T d1w8oa1          78 YRV-GATLRTSAGNA   91 (103)
T ss_dssp             EEE-EEEEEETTEEE
T ss_pred             EEE-EEEEEeCCcce
Confidence            544 34555444433