Citrus Sinensis ID: 039184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSHVIR
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
massssshprnnkydvflsfkgedtrdnFTSHLYSALSQKGIETFIdndlkrgdEISQSLVDAIEASSISIIIFSesyassswCLDELLRILECktnygqivipvfyrvdpshvrkqsgnfedSFSKLEEQFPDRMQTWRIALTEaanlsgfdshvir
Flexible Loop (DISEMBL)
massssshprnnkYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTeaanlsgfdshvir
Low Complexity Region (SEG)
MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDaieassisiiifsesyasssWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSHVIR
Disordered region (IsUnstruct)
*************YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDP*************************QTWRIALTEAA***********
Disordered Region (DISOPRED)
**********NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSHVIR
Disordered Region (DISEMBL)
**********NNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSHVIR
Disordered Region (DISPRO)
*********RNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSHVIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.873	0.120	0.563	2e-40
O82500	1095	Putative disease resistan	yes	no	0.911	0.131	0.538	2e-37
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.936	0.113	0.474	2e-33
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.955	0.426	0.393	2e-26
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.841	0.323	0.394	1e-21
Q9SYC9	571	Vesicle-associated protei	no	no	0.987	0.273	0.341	6e-20
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.898	0.362	0.401	4e-19
Q9FL92	1372	Probable WRKY transcripti	no	no	0.506	0.058	0.397	2e-08
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.803	0.067	0.269	4e-08
P55546	323	Uncharacterized protein y	yes	no	0.594	0.291	0.298	0.0003

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 102/142 (71%), Gaps = 4/142 (2%)

Query: 14  YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISII 72
           YDVFLSF+GEDTR  FTSHLY  L+ KGI+TF D+  L+ G  I   L  AIE S  +I+
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 73  IFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF 132
           +FSE+YA+S WCL+EL++I+ECKT + Q VIP+FY VDPSHVR Q  +F  +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 133 PD---RMQTWRIALTEAANLSG 151
            D    +Q WRIAL EAANL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 102/156 (65%), Gaps = 12/156 (7%)

Query: 1   MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
           MASSSS+  R   YDVF SF+GED R+NF SHL      KGI TF D+ +KR   I   L
Sbjct: 1   MASSSSNSWR---YDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHEL 57

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
             AI  S IS+++FSE+YASSSWCLDEL+ I++CK   G  V+PVFY+VDPS +RKQ+G 
Sbjct: 58  RAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGK 117

Query: 121 FEDSF-----SKLEEQFPDRMQTWRIALTEAANLSG 151
           F  SF      K EE    R   WR ALT+AAN+ G
Sbjct: 118 FGMSFLETCCGKTEE----RQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 104/154 (67%), Gaps = 6/154 (3%)

Query: 1   MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
           +ASSS S     +YDVF SF+GED RD+F SHL   L  K I TFID++++R   I   L
Sbjct: 3   IASSSGSR----RYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPEL 57

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
           + AI+ S I+I+IFS++YASS+WCL+EL+ I +C TN  Q+VIP+F+ VD S V+KQ+G 
Sbjct: 58  LSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGE 117

Query: 121 FEDSFSK-LEEQFPDRMQTWRIALTEAANLSGFD 153
           F   F +  + +  D  Q+W+ AL   A ++G+D
Sbjct: 118 FGKVFEETCKAKSEDEKQSWKQALAAVAVMAGYD 151

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 1   MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
           MA+SSS  P      VF++F+G+D R+ F S L  A+ +  I  FID D   G ++    
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLF 60

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
           V  I+ S ++++IFS+ Y SS WCLDEL  I +C    G   IP+FY++ PS V +  G 
Sbjct: 61  V-RIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Query: 121 FEDSFSKLEEQF---PDRMQTWRIALTEAANLSGF 152
           F D+F  L+E++   P+R Q W+ AL     L G 
Sbjct: 120 FGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 4/137 (2%)

Query: 16  VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFS 75
           VF++F+G+D R  F S L  AL ++ I  FID   +RG  +  SL D I  S I+++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 76  ESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF--- 132
           E Y  S WC+DEL++I E       I+IP+FYR+D   V+  +G F D+F  L +++   
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 133 PDRMQTWRIALTEAANL 149
           P ++  W  AL     L
Sbjct: 143 PKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 5/161 (3%)

Query: 2   ASSSSSHPRN-NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
           ASS+  H     +Y VF++F+G++ R++F   L  A+  + I  F D    RG  ++  L
Sbjct: 345 ASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNY-L 403

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
              IE S +++ IFSE Y  S WCLDEL+++ E       +V+PVFYR++ +  ++  G 
Sbjct: 404 FRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGA 463

Query: 121 FEDSFSKLEEQF---PDRMQTWRIALTEAANLSGFDSHVIR 158
           F D+   LE ++   P+R+Q W+ AL+   +  G  S + R
Sbjct: 464 FGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIGLTSDIRR 504

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 81/147 (55%), Gaps = 5/147 (3%)

Query: 1   MASSSSS-HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQS 59
           MASSSS   P      VF+ F+G D R +F S L  AL +  I  FID +   G E++ +
Sbjct: 1   MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-N 59

Query: 60  LVDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSG 119
           L+  IE S ++++IFS  +  S  CL+EL +I E K     IVIP+FY+V PS V+   G
Sbjct: 60  LLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEG 119

Query: 120 NFEDSFSKLEEQFPDRM---QTWRIAL 143
            F D+F  LE      +   Q W+ AL
Sbjct: 120 KFGDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 8/88 (9%)

Query: 23  EDTRDNFTSHLYSALSQKGI-ETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASS 81
           E+ R +F SHL  AL +KG+ + FID+D    +E SQS+V   E + +S++I   +   S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSDDSLSNE-SQSMV---ERARVSVMILPGNRTVS 69

Query: 82  SWCLDELLRILECKTNYGQIVIPVFYRV 109
              LD+L+++L+C+ N  Q+V+PV Y V
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGV 94

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 25/152 (16%)

Query: 5   SSSHPR---NNKYDVFLSFKGED-TRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
            + +PR   +  YDV + +   D + ++F SHL ++L ++GI  +     ++ +E     
Sbjct: 656 GNPYPRFSSSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVY-----EKFNE----- 705

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
           VDA+    + II+ + +Y  S+     LL ILE +    ++V P+FYR+ P      S N
Sbjct: 706 VDALPKCRVLIIVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKN 760

Query: 121 FEDSFSKLEEQFPDRMQTWRIALTEAANLSGF 152
           +E  +        D  + W+ AL E   + G+
Sbjct: 761 YERFY------LQDEPKKWQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|P55546|Y4LF_RHISN Uncharacterized protein y4lF OS=Rhizobium sp. (strain NGR234) GN=NGR_a02690 PE=4 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 16  VFLSFKGED--TRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIII 73
           VF S+   D   RD     L     Q  IET+ D  +  G++I +++ D I    I +++
Sbjct: 4   VFFSYSHADEGLRDQLEKQLSMLKRQGVIETWHDRRIGAGEDIHRAIDDHINTDDIILLL 63

Query: 74  FSESYASSSWCLD-ELLRILECKTNYGQIVIPVFYRV 109
            S  + +S +C D E+ R +E   +   IVIP+  R 
Sbjct: 64  VSADFIASDYCYDIEMQRAMERHHSGEAIVIPIILRA 100

Rhizobium sp. (strain NGR234) (taxid: 394)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
255561496	876	TMV resistance protein N, putative [Rici	0.930	0.167	0.633	2e-48
255555357	1094	leucine-rich repeat-containing protein,	0.924	0.133	0.630	2e-48
356550897	970	PREDICTED: TMV resistance protein N-like	0.917	0.149	0.632	3e-48
255564976	944	TMV resistance protein N, putative [Rici	0.924	0.154	0.630	6e-48
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.924	0.129	0.610	1e-47
307135797	556	TIR-NBS-LRR disease resistance protein [	0.968	0.275	0.594	1e-47
255569048	1084	leucine-rich repeat-containing protein,	0.981	0.142	0.585	3e-47
356497765	1135	PREDICTED: TMV resistance protein N-like	0.993	0.138	0.575	3e-47
356569977	833	PREDICTED: TMV resistance protein N-like	0.917	0.174	0.612	5e-47
359486120	1218	PREDICTED: TMV resistance protein N-like	0.924	0.119	0.595	6e-47

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/150 (63%), Positives = 117/150 (78%), Gaps = 3/150 (2%)

Query: 12  NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISI 71
            KYDVFLSF+GEDTRDNFTSHLYSAL++K I TF+D ++KRG+EIS S+  AI+ S +S+
Sbjct: 9   KKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAIKGSKLSV 68

Query: 72  IIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQ 131
           IIFSE YA S WCLDEL +ILECK   GQIVIPVFYRVDP HVR Q G+F  +F+K EE 
Sbjct: 69  IIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACAFAKHEET 128

Query: 132 FPDRM---QTWRIALTEAANLSGFDSHVIR 158
             +RM   ++WR AL EA ++SG++S V R
Sbjct: 129 LKERMEKVESWRSALNEAGSISGWNSLVAR 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 118/149 (79%), Gaps = 3/149 (2%)

Query: 13  KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISII 72
           KYDVFLSF+GEDTR NFTSHL++AL+ K I TFID+DL+RG+EIS SL+ AIE S IS++
Sbjct: 22  KYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISVV 81

Query: 73  IFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF 132
           I S+ Y SS WCL+EL++ILEC  N GQ+VIPVFYRVDPSHVR Q+G+FED F++ EE  
Sbjct: 82  IISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEESL 141

Query: 133 ---PDRMQTWRIALTEAANLSGFDSHVIR 158
               +++Q+WR AL E ANLSG+ S   R
Sbjct: 142 SVSKEKVQSWRAALKEVANLSGWHSTSTR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550897|ref|XP_003543819.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 115/147 (78%), Gaps = 2/147 (1%)

Query: 12  NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISI 71
            KYDVFLSF+GEDTR NFTSHLY AL QK IET+ID  L++GDEIS +L+ AIE S +S+
Sbjct: 18  KKYDVFLSFRGEDTRKNFTSHLYEALKQKKIETYIDYRLEKGDEISAALIKAIEDSHVSV 77

Query: 72  IIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQ 131
           +IFSE+YASS WCL EL +I+ECK   GQIVIPVFY +DPSHVRKQ+G++E SF+K   +
Sbjct: 78  VIFSENYASSKWCLGELGKIMECKKERGQIVIPVFYNIDPSHVRKQTGSYEQSFAKHTGE 137

Query: 132 FPDRMQTWRIALTEAANLSGFDSHVIR 158
              R   W+ ALTEAANL+ +DS + R
Sbjct: 138 --PRCSKWKAALTEAANLAAWDSQIYR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 116/149 (77%), Gaps = 3/149 (2%)

Query: 13  KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISII 72
           KYDVF+SF+GEDTRDNFTSHLY+AL QK I+ F+D+ L RG+EIS +LV  IE S +S+I
Sbjct: 15  KYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVI 74

Query: 73  IFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF 132
           IFSE+YA S WCLDEL++ILECK   GQIV+PVFY VDPS V +Q G F  +F + E+ F
Sbjct: 75  IFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCF 134

Query: 133 P---DRMQTWRIALTEAANLSGFDSHVIR 158
               D++Q WR ALTEAAN+SG+ S VIR
Sbjct: 135 KERIDKLQKWRAALTEAANISGWSSSVIR 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/149 (61%), Positives = 118/149 (79%), Gaps = 3/149 (2%)

Query: 13  KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISII 72
           KYDVFLSF+GEDTR  F SHLY+AL +K I TFID  L RG+EIS SL+ AIE S +S++
Sbjct: 14  KYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSVV 73

Query: 73  IFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF 132
           +FS++YASS WCL+EL +ILECK   GQ+VIPVFYRVDPSHVR Q+G+F D+F++ ++  
Sbjct: 74  VFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQLL 133

Query: 133 PDRMQ---TWRIALTEAANLSGFDSHVIR 158
            ++M+    WR A+ EAANLSG+DSH I+
Sbjct: 134 KEKMEKVLNWRAAMREAANLSGWDSHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135797|gb|ADN33676.1| TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/153 (59%), Positives = 120/153 (78%)

Query: 1   MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
           M SS+ S      YDVFLSF+GEDTR NFTSHL  AL QKG+  FID+ L+RG++IS+SL
Sbjct: 1   MDSSTESSTFKWSYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESL 60

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
             +I+ + ISI+IFS++YASSSWCLDEL++I+ECK + GQIV+P+FY+VDPS +RKQSG 
Sbjct: 61  FKSIQEALISIVIFSQNYASSSWCLDELVKIIECKKSKGQIVLPIFYKVDPSDIRKQSGT 120

Query: 121 FEDSFSKLEEQFPDRMQTWRIALTEAANLSGFD 153
           F ++ +K + +F  + Q WR ALT AANLSG+D
Sbjct: 121 FGEALAKHQAKFQTKTQIWREALTTAANLSGWD 153

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569048|ref|XP_002525493.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223535172|gb|EEF36851.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 124/157 (78%), Gaps = 2/157 (1%)

Query: 1   MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
           MASSS+S  R  K+DVFLSF+G+DTRDNFTSHLY AL +K I+TFIDN L+RG+EI+ +L
Sbjct: 1   MASSSNSPKR--KFDVFLSFRGKDTRDNFTSHLYDALCRKKIKTFIDNGLERGEEITPAL 58

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
           +  IE S IS+I+FSE+YASS WCLDE+++ILEC+  +GQ V+PVFY VDPS V +Q+G+
Sbjct: 59  LRTIEESLISVIVFSENYASSPWCLDEMVKILECRETHGQAVLPVFYHVDPSDVEEQNGS 118

Query: 121 FEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSHVI 157
           F  +  +LE+ F D++  WR  L +AA++SG+DS  I
Sbjct: 119 FALTLVELEKNFKDKVSKWRTDLMKAASISGWDSRAI 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497765|ref|XP_003517729.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/160 (57%), Positives = 120/160 (75%), Gaps = 3/160 (1%)

Query: 2   ASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLV 61
           ASSSS      +YDVFLSF+GEDTR   TSHLY AL Q  + T+ID  L++GDEISQ+L+
Sbjct: 10  ASSSSCVASLKRYDVFLSFRGEDTRKIITSHLYHALFQAELATYIDYRLQKGDEISQALI 69

Query: 62  DAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNF 121
           +AIE S +S+IIFSE YA+S WCLDE+ +I+ECK   GQ+VIPVFY++DPSH+RKQ G+F
Sbjct: 70  EAIEESQVSVIIFSEKYATSKWCLDEITKIIECKEGQGQVVIPVFYKIDPSHIRKQQGSF 129

Query: 122 EDSFSKLEEQFP---DRMQTWRIALTEAANLSGFDSHVIR 158
           + +F + E+      DR+Q WR ALT+AANL+G+D    R
Sbjct: 130 KQAFVEHEQDLKITTDRVQKWREALTKAANLAGWDFQTYR 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569977|ref|XP_003553169.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/147 (61%), Positives = 116/147 (78%), Gaps = 2/147 (1%)

Query: 12  NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISI 71
            KYDVFLSF+GEDTR NFTSHLY AL QK +ET+ID  L++GDEIS +L+ AIE S +SI
Sbjct: 18  KKYDVFLSFRGEDTRRNFTSHLYEALKQKKVETYIDEHLEKGDEISPALIKAIEDSHVSI 77

Query: 72  IIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQ 131
           ++FS++YASS WCL EL++IL+CK + GQIVIPVFY +DPS VRKQ+G++E +F+K E +
Sbjct: 78  VVFSKNYASSKWCLVELIKILDCKKDRGQIVIPVFYEIDPSDVRKQTGSYEQAFAKHEGE 137

Query: 132 FPDRMQTWRIALTEAANLSGFDSHVIR 158
                  W+ ALTEAANL+G+DS   R
Sbjct: 138 --PSCNKWKTALTEAANLAGWDSRTYR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486120|ref|XP_003633392.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 114/146 (78%)

Query: 7   SHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEA 66
           S PR + YDVFLSF+GEDTR NFT HLYSAL ++GI TF D+ L+RG+ I+  L+ AIE 
Sbjct: 17  SIPRTSTYDVFLSFRGEDTRYNFTDHLYSALGRRGIRTFRDDKLRRGEVIAPELLKAIEE 76

Query: 67  SSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFS 126
           S  S+I+FSE+YA S WCLDEL++I+EC+ + G  V P+FY VDPSHVRKQ G+F ++F+
Sbjct: 77  SRSSVIVFSENYARSRWCLDELVKIMECQKDLGHAVFPIFYHVDPSHVRKQEGSFGEAFA 136

Query: 127 KLEEQFPDRMQTWRIALTEAANLSGF 152
           + EE + D++  WR ALTEAANLSG+
Sbjct: 137 RYEENWKDKIPRWRRALTEAANLSGW 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.943	0.130	0.490	3.2e-30
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.968	0.136	0.445	4.3e-28
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.981	0.137	0.417	1.2e-27
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.955	0.109	0.429	2.6e-27
TAIR|locus:2129221	1147	RPP4 "recognition of peronospo	0.962	0.132	0.454	6.6e-27
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.917	0.143	0.452	8.8e-27
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.924	0.119	0.410	2.5e-26
TAIR|locus:2130280	1041	AT4G16960 [Arabidopsis thalian	0.962	0.146	0.448	3.2e-26
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.924	0.466	0.395	3.2e-26
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.968	0.128	0.410	3.9e-26

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 346 (126.9 bits), Expect = 3.2e-30, P = 3.2e-30
 Identities = 76/155 (49%), Positives = 94/155 (60%)

Query:     1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQS 59
             MASSSSS   +  YDVFLSF+GEDTR  FTSHLY  L+ KGI+TF D+  L+ G  I   
Sbjct:     1 MASSSSSSRWS--YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    60 LVDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSG 119
             L                      WCL+EL++I+ECKT + Q VIP+FY VDPSHVR Q  
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKE 118

Query:   120 NFEDSFSKLEEQFPDRM---QTWRIALTEAANLSG 151
             +F  +F + E ++ D +   Q WRIAL EAANL G
Sbjct:   119 SFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 4.3e-28, P = 4.3e-28
 Identities = 69/155 (44%), Positives = 88/155 (56%)

Query:     1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
             MASSSSS  RN  YDVF SF GED R  F SH    L +K I TF DN+++R   I+  L
Sbjct:     1 MASSSSSS-RNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPEL 59

Query:    61 VDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
             V+                    WCL+ELL I+ C    GQ VIPVFY +DPSH+RKQSG 
Sbjct:    60 VEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGE 119

Query:   121 FEDSFSKL-EEQFPDRMQTWRIALTEAANLSGFDS 154
             F ++F K  + Q  +    W+ ALT+ +N+ G+ S
Sbjct:   120 FGEAFKKTCQNQTEEVKNQWKQALTDVSNILGYHS 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 66/158 (41%), Positives = 89/158 (56%)

Query:     1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
             MASSSSS  RN  Y VF SF GED R+ F SH    L +K I +F DN+++R   +   L
Sbjct:     1 MASSSSSSSRNWSYHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPEL 60

Query:    61 VDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
                                   WCL+ELL I++CK  +GQ+VIP+FY +DPSHVRKQ+G+
Sbjct:    61 KHGIRNSRIAVVVFSKTYASSSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSHVRKQTGD 120

Query:   121 FEDSFSKL-EEQFPDRMQTWRIALTEAANLSGFDSHVI 157
             F   F K    +  D    W+ ALT+ AN+ G+  H++
Sbjct:   121 FGKIFEKTCRNKTVDEKIRWKEALTDVANILGY--HIV 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 2.6e-27, P = 2.6e-27
 Identities = 67/156 (42%), Positives = 90/156 (57%)

Query:     1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQS 59
             M S   S P   KYDVFLSF+G DTRDNF  HLY AL  K +  F DN+ ++RGDEIS S
Sbjct:     1 MESGVVSKPHRLKYDVFLSFRGADTRDNFGDHLYKALKDK-VRVFRDNEGMERGDEISSS 59

Query:    60 LVDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSG 119
             L                      WCLDEL  + + K++  + ++P+FY VDPSHVRKQS 
Sbjct:    60 LKAGMEDSAASVIVISRNYSGSRWCLDELAMLCKMKSSLDRRILPIFYHVDPSHVRKQSD 119

Query:   120 NFEDSFSKLEEQFPD---RMQTWRIALTEAANLSGF 152
             + +  F + + +F +   ++Q WR ALT   NL+G+
Sbjct:   120 HIKKDFEEHQVRFSEEKEKVQEWREALTLVGNLAGY 155

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2129221 RPP4 "recognition of peronospora parasitica 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 6.6e-27, P = 6.6e-27
 Identities = 70/154 (45%), Positives = 88/154 (57%)

Query:     1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
             MASSSSS P + +YDVF SF G D R  F SHL  AL ++ I TF+D+ + R   I+ +L
Sbjct:     1 MASSSSS-PSSRRYDVFPSFSGVDVRKTFLSHLIEALDRRSINTFMDHGIVRSCIIADAL 59

Query:    61 VDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
             +                     WCL+EL+ I +C     Q+VIPVFY VDPSHVRKQ G 
Sbjct:    60 ITAIREARISIVIFSENYASSTWCLNELVEIHKCYKKGEQMVIPVFYGVDPSHVRKQIGG 119

Query:   121 FEDSFSKLEEQFP-DRMQTWRIALTEAANLSGFD 153
             F D F K  E  P D+ Q W  ALT+ +NL+G D
Sbjct:   120 FGDVFKKTCEDKPEDQKQRWVKALTDISNLAGED 153

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=ISS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 8.8e-27, P = 8.8e-27
 Identities = 66/146 (45%), Positives = 79/146 (54%)

Query:    10 RNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDXXXXXXX 69
             RN  YDVF SF GED R  F SH    L +K I  F DND++R   +   L         
Sbjct:     6 RNWLYDVFPSFSGEDVRVTFLSHFLKELDRKLISVFKDNDIQRSQSLDPELKLAIRDSRI 65

Query:    70 XXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKL- 128
                          WCLDELL I++CK  +GQIVIPVFY +DP HVRKQSG F   F    
Sbjct:    66 AIVVFSKNYAASSWCLDELLEIVKCKEEFGQIVIPVFYGLDPCHVRKQSGEFGIVFENTC 125

Query:   129 EEQFPDRMQTWRIALTEAANLSGFDS 154
             + +  D +Q WR ALT+ AN+ GF S
Sbjct:   126 QTKTDDEIQKWRRALTDVANILGFHS 151

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/151 (41%), Positives = 91/151 (60%)

Query:     6 SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDXXX 65
             SS P + ++DVFLSF+G DTR+NFT HL  AL  +GI++FID+ L+RGD ++ +L D   
Sbjct:     3 SSSPSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDRIE 61

Query:    66 XXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSF 125
                              WCL EL++ILEC+ +  Q+V+P+FY+VD S V KQ  +F   F
Sbjct:    62 KSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNSFAVPF 121

Query:   126 SKLEEQFP----DRMQTWRIALTEAANLSGF 152
                E  FP    + + +W+ AL  A+N+ G+
Sbjct:   122 KLPELTFPGVTPEEISSWKAALASASNILGY 152

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2130280 AT4G16960 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 70/156 (44%), Positives = 88/156 (56%)

Query:     1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSL 60
             MASSSSS P + +YDVF SF G D R  F SHL  AL ++ I TF+D+ + R   I+  L
Sbjct:     1 MASSSSS-PSSRRYDVFPSFSGVDVRKTFLSHLIEALDRRSINTFMDHGIVRSCIIADEL 59

Query:    61 VDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECKTN--YGQIVIPVFYRVDPSHVRKQS 118
             +                     WCL+EL+ I +C  +    Q+VIPVFY VDPSHVRKQ 
Sbjct:    60 ITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDKDLDQMVIPVFYGVDPSHVRKQI 119

Query:   119 GNFEDSFSKLEEQFP-DRMQTWRIALTEAANLSGFD 153
             G F D F K  E  P D+ Q W  ALT+ +NL+G D
Sbjct:   120 GGFGDVFKKTCEDKPEDQKQRWVKALTDISNLAGED 155

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 59/149 (39%), Positives = 90/149 (60%)

Query:     6 SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDXXX 65
             +S P+  K+DVF+SF+ +DTRDNF SHL   L +K I+TF+ ++L   +   +SL     
Sbjct:     2 NSSPKM-KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESL-KAIE 59

Query:    66 XXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSF 125
                              WCLDE++ IL+CK  +GQIVIPV Y VDP  +  Q+G+F D+F
Sbjct:    60 VSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAF 119

Query:   126 SKLEEQFPDRMQTWRIALTEAANLSGFDS 154
             +K  ++  +++Q W+ + TEA NL G+ +
Sbjct:   120 AKRRDK-AEQLQEWKDSFTEAINLPGWST 147

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 3.9e-26, P = 3.9e-26
 Identities = 64/156 (41%), Positives = 91/156 (58%)

Query:     1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN-DLKRGDEISQS 59
             MA      P    YDVF+SF+G D R NF SHLY +L + GI TF+D+ +L+RG+ IS  
Sbjct:     4 MAQGRERIPERWTYDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPE 63

Query:    60 LVDXXXXXXXXXXXXXXXXXXXXWCLDELLRILEC-KTNYGQIVIPVFYRVDPSHVRKQS 118
             L++                    WCLDEL+ I++  K N   +V P+F  VDPS +R Q 
Sbjct:    64 LLNAIETSKILIVVLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQ 123

Query:   119 GNFEDSFSKLEEQFP-DRMQTWRIALTEAANLSGFD 153
             G++  SFSK +   P ++++ WR ALT+ AN+SG+D
Sbjct:   124 GSYAKSFSKHKNSHPLNKLKDWREALTKVANISGWD 159

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-49
pfam01582	135	pfam01582, TIR, TIR domain	1e-40
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-38
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-15
pfam13676	102	pfam13676, TIR_2, TIR domain	4e-14

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  169 bits (430), Expect = 2e-49
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 1/154 (0%)

Query: 2   ASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLV 61
            +SSSS  RN  YDVF SF GED R  F SH    L +K I  F DN+++R   +   L 
Sbjct: 1   MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELK 60

Query: 62  DAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNF 121
            AI  S I++++FS++YASSSWCL+ELL I+ CK   GQ+VIPVFY +DPSHVRKQ+G+F
Sbjct: 61  QAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDF 120

Query: 122 EDSFSKL-EEQFPDRMQTWRIALTEAANLSGFDS 154
            ++F K  + +  D    W+ ALT+ AN+ G+ S
Sbjct: 121 GEAFEKTCQNKTEDEKIQWKQALTDVANILGYHS 154

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  132 bits (335), Expect = 1e-40
 Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 6/135 (4%)

Query: 16  VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN-DLKRGDEISQSLVDAIEASSISIIIF 74
           VF+SF G+D RD F SHL   L +KGI+  ID+ D   G+ I ++L +AIE S  +I+IF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 75  SESYASSSWCLDELLRILECK--TNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQ- 131
           S +YASS WCLDEL+ I++C       ++++P+FY+VDPS VR QSG F  +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 132 --FPDRMQTWRIALT 144
               D+++ W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  127 bits (320), Expect = 2e-38
 Identities = 59/141 (41%), Positives = 83/141 (58%), Gaps = 5/141 (3%)

Query: 13  KYDVFLSFKG-EDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISI 71
           +YDVF+S+ G ED R+ F SHL   L   G+  FID+    G ++ + + +AIE S I+I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAI 59

Query: 72  IIFSESYASSSWCLDELLRILECKTNYGQI-VIPVFYRVDPSHVRKQSGNFEDSFSKLEE 130
           ++ S +YA S WCLDEL+  LE     G + VIP+FY V PS VRKQ G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 131 QFPD--RMQTWRIALTEAANL 149
           ++P+  + Q W+ AL    + 
Sbjct: 120 KWPEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 16/152 (10%)

Query: 6   SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN-DLKRGDEISQSLVDAI 64
           SS       DVF++ +G DT+    + LY  LS+  +  F+DN ++K GD++   +  AI
Sbjct: 19  SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAI 78

Query: 65  EASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDS 124
               + + +FS  Y  S +CL EL  I+E K      VIP+F  V PS +R      ++ 
Sbjct: 79  RNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLRVV----DNG 130

Query: 125 FSKLEEQFPDRMQTWRIALTEAANLSG--FDS 154
               EE     ++ +  AL EA    G  FDS
Sbjct: 131 TCPDEE-----IRRFNWALEEAKYTVGLTFDS 157

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 64.1 bits (157), Expect = 4e-14
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 16  VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFS 75
           VF+S+   D    +   L  AL   GI  ++D D+  G++    + +A+ ++ + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 76  ESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPS 112
            +Y +S WC  E    LE     G+ +IPV  R++  
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV--RLEDC 89

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.93
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.83
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.41
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.91
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.4
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.64
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	96.15
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	95.23
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	94.96
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	93.47
COG4271	233	Predicted nucleotide-binding protein containing TI	92.28
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	87.55
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	82.48
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	82.48

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2.4e-41  Score=253.66  Aligned_cols=133  Identities=32%  Similarity=0.586  Sum_probs=121.8

Q ss_pred             CCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHH
Q 039184            9 PRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDE   87 (158)
Q Consensus         9 ~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~E   87 (158)
                      +....|||||||+++|+|+.|+++|+.+|+++||++|+|+. +.+|+.+.+.|.+||++|++.|+|+||+|..|.||++|
T Consensus        22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE  101 (187)
T PLN03194         22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE  101 (187)
T ss_pred             CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence            33567999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCceeeEEEeeCCcccccc-cCchHHHHHHHHhcchhHHHHHHHHHHHhhcccceeec
Q 039184           88 LLRILECKTNYGQIVIPVFYRVDPSHVRKQ-SGNFEDSFSKLEEQFPDRMQTWRIALTEAANLSGFDSH  155 (158)
Q Consensus        88 l~~a~~~~~~~~~~iiPI~~~v~p~~v~~~-~~~~~~~f~~~~~~~~~~~~~W~~al~~i~~~~G~~~~  155 (158)
                      |..++++.    ..||||||+|+|++|+.| .+..          -.+++++||+||+++++++|+.++
T Consensus       102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194        102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCC
Confidence            99998763    379999999999999996 3321          168999999999999999999774

>PLN03210 Resistant to P

Probab=100.00  E-value=4e-39  Score=297.72  Aligned_cols=154  Identities=51%  Similarity=0.852  Sum_probs=145.7

Q ss_pred             CCCCCCCCCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcC
Q 039184            1 MASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYAS   80 (158)
Q Consensus         1 ~~~s~~s~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~   80 (158)
                      |++|| |+++.++|||||||+++|+|+.|++||+.+|.++||++|.|+.+..|+.+..++.+||++|++.|+|+|++|+.
T Consensus         1 ~~~~~-~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~   79 (1153)
T PLN03210          1 MASSS-SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS   79 (1153)
T ss_pred             CCCCC-CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence            66664 44457899999999999999999999999999999999998779999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHhhcCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHHHHHHHHHHHhhcccceeec
Q 039184           81 SSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTWRIALTEAANLSGFDSH  155 (158)
Q Consensus        81 S~wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W~~al~~i~~~~G~~~~  155 (158)
                      |.||++||.+++++.++.+..||||||+|+|+||+.|+|.||++|.++.+.. +|++++||+||++|++++|+++.
T Consensus        80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~  155 (1153)
T PLN03210         80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ  155 (1153)
T ss_pred             chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecC
Confidence            9999999999999998899999999999999999999999999999998876 89999999999999999999874

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=7.7e-26  Score=162.86  Aligned_cols=135  Identities=42%  Similarity=0.724  Sum_probs=112.9

Q ss_pred             cccEEEeccc-CcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184           13 KYDVFLSFKG-EDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI   91 (158)
Q Consensus        13 ~~DVFISys~-~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a   91 (158)
                      +|||||||++ ++..+.|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            4999999999 34457899999999999999999998733333333 999999999999999999999999999999999


Q ss_pred             HHHHhh-cCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHH-HHHHHHHHHhhc
Q 039184           92 LECKTN-YGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRM-QTWRIALTEAAN  148 (158)
Q Consensus        92 ~~~~~~-~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~-~~W~~al~~i~~  148 (158)
                      +++..+ ...+||||+++..|.++..+.+.++..+...+... +++. +.|+.++..+++
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence            987644 67899999999889889999999999998875444 2332 689999887764

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.93  E-value=1.2e-26  Score=168.59  Aligned_cols=129  Identities=36%  Similarity=0.596  Sum_probs=112.9

Q ss_pred             EEEecccCcCchhHHHHHHHHHhcC--CceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHH
Q 039184           16 VFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRIL   92 (158)
Q Consensus        16 VFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~   92 (158)
                      |||||++.+.+++|+.+|...|++.  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|+||+.|+..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333689999999999999  999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhc--CCceeeEEEeeCCcccc-cccCchHHHHHHHHhcc-----hhHHHHHHHHHH
Q 039184           93 ECKTNY--GQIVIPVFYRVDPSHVR-KQSGNFEDSFSKLEEQF-----PDRMQTWRIALT  144 (158)
Q Consensus        93 ~~~~~~--~~~iiPI~~~v~p~~v~-~~~~~~~~~f~~~~~~~-----~~~~~~W~~al~  144 (158)
                      ++....  ...|+||++++.+.+++ .+.+.|+..|.......     .+....|+.++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            997553  48899999999999999 68888999998877765     246889988875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.83  E-value=2.2e-21  Score=133.07  Aligned_cols=93  Identities=34%  Similarity=0.625  Sum_probs=77.6

Q ss_pred             EEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184           16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRILECK   95 (158)
Q Consensus        16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~   95 (158)
                      |||||+++|  ..+|..|...|++.|+++|+|..+.+|+.+.+.|.++|++|+++|+++||+|.+|+||..|+..|.+  
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            899999999  4799999999999999999996699999999999999999999999999999999999999999943  


Q ss_pred             hhcCCceeeEEEeeCCccccc
Q 039184           96 TNYGQIVIPVFYRVDPSHVRK  116 (158)
Q Consensus        96 ~~~~~~iiPI~~~v~p~~v~~  116 (158)
                        .+.+||||.+  ++.+++.
T Consensus        77 --~~~~iipv~~--~~~~~p~   93 (102)
T PF13676_consen   77 --RGKPIIPVRL--DPCELPG   93 (102)
T ss_dssp             --TSESEEEEEC--SGGGS-G
T ss_pred             --CCCEEEEEEE--CCcCCCH
Confidence              4458999994  4455544

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.41  E-value=4.9e-13  Score=112.76  Aligned_cols=126  Identities=21%  Similarity=0.339  Sum_probs=104.5

Q ss_pred             CCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcC------
Q 039184            8 HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYAS------   80 (158)
Q Consensus         8 ~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~------   80 (158)
                      .+-+++.||||||+..- ...+++.|.-.|+-+|++||+|-+ +..|.. .+.+.+.|..++.+|+|+||+.+.      
T Consensus       607 a~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~  684 (832)
T KOG3678|consen  607 AMLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDD  684 (832)
T ss_pred             ccccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccc
Confidence            34567899999998765 468999999999999999999999 999975 458889999999999999999763      


Q ss_pred             --ChhHHHHHHHHHHHHhhcCCceeeEEEe---------eCCcccccccCchHHHHHHHHhcc-hhHHHHH
Q 039184           81 --SSWCLDELLRILECKTNYGQIVIPVFYR---------VDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTW  139 (158)
Q Consensus        81 --S~wc~~El~~a~~~~~~~~~~iiPI~~~---------v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W  139 (158)
                        -+|...|+..|+++.+    .|||||-.         +.|.|++..+..-|..|.+.++.. .+|+.++
T Consensus       685 nCeDWVHKEl~~Afe~~K----NIiPI~D~aFE~Pt~ed~iPnDirmi~kyNGvKWvHdYQdA~maKvvRF  751 (832)
T KOG3678|consen  685 NCEDWVHKELKCAFEHQK----NIIPIFDTAFEFPTKEDQIPNDIRMITKYNGVKWVHDYQDACMAKVVRF  751 (832)
T ss_pred             cHHHHHHHHHHHHHHhcC----CeeeeecccccCCCchhcCcHHHHHHHhccCeeeehhhHHHHHHHHHHH
Confidence              4788889999988876    89999843         667778777777788888888766 6677766

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.91  E-value=2.5e-09  Score=76.60  Aligned_cols=89  Identities=26%  Similarity=0.452  Sum_probs=48.8

Q ss_pred             ccEEEecccCcCchhHHHHHHHHHhcC-------CceE-Ee---------eCC-CCCCccchHHHHHHhHhcceEEEEee
Q 039184           14 YDVFLSFKGEDTRDNFTSHLYSALSQK-------GIET-FI---------DND-LKRGDEISQSLVDAIEASSISIIIFS   75 (158)
Q Consensus        14 ~DVFISys~~D~~~~fv~~L~~~L~~~-------gi~v-~~---------d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS   75 (158)
                      |.|||||++.|. ...+..|...+...       ++.. +.         +.. ....+.+...|.+.|.+|+++||+++
T Consensus         1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            579999999984 34777777777663       2211 11         111 22344788899999999999999999


Q ss_pred             cCCcCChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184           76 ESYASSSWCLDELLRILECKTNYGQIVIPVFY  107 (158)
Q Consensus        76 ~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~~  107 (158)
                      ++...|+|+..|+..|++.    +..||.|.+
T Consensus        80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~~  107 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKK----GKPIIGVYL  107 (130)
T ss_dssp             TT----HHHHHHHHHHTTT-------EEEEET
T ss_pred             CCcccCcHHHHHHHHHHHC----CCCEEEEEC
Confidence            9999999999999999764    448888875

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.40  E-value=2.2e-06  Score=62.38  Aligned_cols=103  Identities=18%  Similarity=0.326  Sum_probs=71.0

Q ss_pred             cEEEecccCcC-chhHHHHHHHHHhcC-CceEEeeCC-CC--CCccchHHHHHHhHhcceEEEEeecCCcC---------
Q 039184           15 DVFLSFKGEDT-RDNFTSHLYSALSQK-GIETFIDND-LK--RGDEISQSLVDAIEASSISIIIFSESYAS---------   80 (158)
Q Consensus        15 DVFISys~~D~-~~~fv~~L~~~L~~~-gi~v~~d~~-i~--~G~~~~~~i~~~i~~s~~~I~vlS~~~~~---------   80 (158)
                      -|||||++... ....|..|+..|++. |+.|.+|.. ..  ++..+..=+.+.+++++.+|+|.||.+..         
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~~~~~~~~~~~   81 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYKERYDKKADER   81 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchhHHHHHhhccC
Confidence            39999998543 246799999999999 999999998 63  36677777888899999999999965421         


Q ss_pred             ----ChhHHHH-HHHHHHHH------hhcCCceeeEEE-eeCCcccccc
Q 039184           81 ----SSWCLDE-LLRILECK------TNYGQIVIPVFY-RVDPSHVRKQ  117 (158)
Q Consensus        81 ----S~wc~~E-l~~a~~~~------~~~~~~iiPI~~-~v~p~~v~~~  117 (158)
                          ...+..+ +..++...      .....+.|||++ ..++.+|+..
T Consensus        82 ~~~~~~~~~~d~f~~~l~~~l~~~~~~~~~~kfi~v~f~~~~~~~iP~~  130 (150)
T PF08357_consen   82 EGGVGTEPQGDLFIAALNLILRDFYQGENNKKFIPVYFDYSDEEDIPEP  130 (150)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHhccccccceeEEEeCCCCcccCCHH
Confidence                1111111 11222221      234568999998 4566666643

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.64  E-value=0.00023  Score=50.84  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             EEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCc-------------CC
Q 039184           16 VFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYA-------------SS   81 (158)
Q Consensus        16 VFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~-------------~S   81 (158)
                      |||.|+ +|  ...+..+...|+..|+.+-+=.. ...|..+.+.+.+.+.+|+..|+++||+=.             ..
T Consensus         2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~aR   78 (125)
T PF10137_consen    2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRAR   78 (125)
T ss_pred             EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCccccccccc
Confidence            899998 55  47889999999988887655444 799999999999999999999999998521             23


Q ss_pred             hhHHHHHHHHHHHHhhcCCceeeEE
Q 039184           82 SWCLDELLRILECKTNYGQIVIPVF  106 (158)
Q Consensus        82 ~wc~~El~~a~~~~~~~~~~iiPI~  106 (158)
                      .....|+..++.+.  +..+++.+.
T Consensus        79 ~NVifE~G~f~g~L--Gr~rv~~l~  101 (125)
T PF10137_consen   79 QNVIFELGLFIGKL--GRERVFILV  101 (125)
T ss_pred             cceeehhhHHHhhc--CcceEEEEE
Confidence            44677999988753  223555544

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=96.15  E-value=0.027  Score=37.00  Aligned_cols=66  Identities=20%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             cEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCC-CCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184           15 DVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDL-KRGDEISQSLVDAIEASSISIIIFSESYASS   81 (158)
Q Consensus        15 DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i-~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S   81 (158)
                      .||||-.-.|. +.--..|.+.|.+.|..+..-+.+ ..+....+.+.+.|++|+++|.++...|-..
T Consensus         1 rVFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            38999988886 344567777787778766543333 3356666788899999999999999988643

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=95.23  E-value=0.025  Score=45.08  Aligned_cols=99  Identities=20%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             CCCcccEEEecccCcCchhHHHHHHHHHhc--CCceEEeeCC----CCCCccchHHHHHHhH-hcceEEEEeecCCcCCh
Q 039184           10 RNNKYDVFLSFKGEDTRDNFTSHLYSALSQ--KGIETFIDND----LKRGDEISQSLVDAIE-ASSISIIIFSESYASSS   82 (158)
Q Consensus        10 ~~~~~DVFISys~~D~~~~fv~~L~~~L~~--~gi~v~~d~~----i~~G~~~~~~i~~~i~-~s~~~I~vlS~~~~~S~   82 (158)
                      ..+.||+=|||.++-  +.+|+....+++.  ....-|+|..    +.+|+ +.+-+...-. .|++.++++..+|....
T Consensus       174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K~  250 (329)
T COG4916         174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICKS  250 (329)
T ss_pred             cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEee
Confidence            467899999999986  5899999999984  4567788865    33443 3333333333 69999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCceeeEEE-eeCCcc
Q 039184           83 WCLDELLRILECKTNYGQIVIPVFY-RVDPSH  113 (158)
Q Consensus        83 wc~~El~~a~~~~~~~~~~iiPI~~-~v~p~~  113 (158)
                      ||..|....-.-  ..-..+.||.| +++..-
T Consensus       251 ~c~~E~~~~r~~--~~~d~~~rI~~~~~d~~a  280 (329)
T COG4916         251 TCHIEGLEGRLN--PILDTGFRIKYLYADNIA  280 (329)
T ss_pred             eeccchhhcccc--ccccccceEEEEecCCcc
Confidence            999998766332  12335667766 333333

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=94.96  E-value=0.18  Score=34.77  Aligned_cols=69  Identities=19%  Similarity=0.177  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCC--CC---CCccchHHH----HHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHHh
Q 039184           27 DNFTSHLYSALSQKGIETFIDND--LK---RGDEISQSL----VDAIEASSISIIIFSESYASSSWCLDELLRILECKT   96 (158)
Q Consensus        27 ~~fv~~L~~~L~~~gi~v~~d~~--i~---~G~~~~~~i----~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~   96 (158)
                      ..+...+.+.|++.|+.++...+  ..   .+..+..+|    .++|++|+++|+++.+.- .+.-+..|+..|....+
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algk   90 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGK   90 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCC
Confidence            57889999999999999998764  21   233344444    478999999999998755 67778999999977543

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=93.47  E-value=0.9  Score=30.55  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             EEEec--ccC-cC-chhHHHHHHHHHhcCCceEEeeCCC--CCCccchHHHH---HHhHhcceEEEEeecCCcCChhHHH
Q 039184           16 VFLSF--KGE-DT-RDNFTSHLYSALSQKGIETFIDNDL--KRGDEISQSLV---DAIEASSISIIIFSESYASSSWCLD   86 (158)
Q Consensus        16 VFISy--s~~-D~-~~~fv~~L~~~L~~~gi~v~~d~~i--~~G~~~~~~i~---~~i~~s~~~I~vlS~~~~~S~wc~~   86 (158)
                      ||||.  ++. |. +..| ......|+..|+.|.-.-.+  ..|.++.+-+.   ..|..|+.+++  =|++-+|.-|+.
T Consensus         1 iYIaGPmtG~~~~N~~~f-~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~   77 (92)
T PF14359_consen    1 IYIAGPMTGLPDYNRPAF-NAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARL   77 (92)
T ss_pred             CeEeCCcCCCcchHHHHH-HHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHH
Confidence            46664  332 21 3344 45778899999887644433  66777666554   45557886544  399999999999


Q ss_pred             HHHHHHHH
Q 039184           87 ELLRILEC   94 (158)
Q Consensus        87 El~~a~~~   94 (158)
                      |...|...
T Consensus        78 E~~~A~~l   85 (92)
T PF14359_consen   78 EHELAKKL   85 (92)
T ss_pred             HHHHHHHC
Confidence            99999654

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=92.28  E-value=0.48  Score=36.54  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             cEEEecccCcCchhHHHHHHHHHhcC--CceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCc-------------
Q 039184           15 DVFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYA-------------   79 (158)
Q Consensus        15 DVFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~-------------   79 (158)
                      -|||-|+++    ..+.....+|.+.  =..+|+|.-+..|..+.+.+++-|.+++..|++.+|+=.             
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            899999764    3676666666643  356777777999999999999999999999999999843             


Q ss_pred             -CChhHHHHHHHHHHHHhhcCCceeeEEE
Q 039184           80 -SSSWCLDELLRILECKTNYGQIVIPVFY  107 (158)
Q Consensus        80 -~S~wc~~El~~a~~~~~~~~~~iiPI~~  107 (158)
                       .......||..++.+.  +..+|+-+..
T Consensus       160 raRqNVifELGm~mgrL--gRkrv~Il~k  186 (233)
T COG4271         160 RARQNVIFELGMFMGRL--GRKRVMILMK  186 (233)
T ss_pred             cccccchhhHhhHHhhc--ccceEEEEec
Confidence             1223566888887653  2345555443

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=87.55  E-value=3.5  Score=26.42  Aligned_cols=60  Identities=13%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             ccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecC
Q 039184           14 YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSES   77 (158)
Q Consensus        14 ~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~   77 (158)
                      +||+|.....+. ...+..+...|++.|++|-+|..   +.++...+..+-..---+++++.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcc
Confidence            677777655443 46788999999999999998775   2344445555544333344455444

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=82.48  E-value=5.6  Score=25.89  Aligned_cols=46  Identities=22%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhH-hcceEEEEeec
Q 039184           27 DNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIFSE   76 (158)
Q Consensus        27 ~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vlS~   76 (158)
                      ..++.+|...|++.|+++.+|..   +..+...+..+-. +.. +++++.+
T Consensus        15 ~~~a~~l~~~L~~~gi~v~~d~~---~~~~~k~~~~a~~~g~p-~~iiiG~   61 (94)
T PF03129_consen   15 IEYAQELANKLRKAGIRVELDDS---DKSLGKQIKYADKLGIP-FIIIIGE   61 (94)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEESS---SSTHHHHHHHHHHTTES-EEEEEEH
T ss_pred             HHHHHHHHHHHHHCCCEEEEECC---CCchhHHHHHHhhcCCe-EEEEECc
Confidence            46889999999999999999875   3334445555554 444 4455543

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=82.48  E-value=7.2  Score=25.02  Aligned_cols=60  Identities=18%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             ccEEEecccC---cCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecC
Q 039184           14 YDVFLSFKGE---DTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSES   77 (158)
Q Consensus        14 ~DVFISys~~---D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~   77 (158)
                      ++|+|-....   .. ...+..+...|++.|+.+-+|..   +..+...+..+-..---+++++.++
T Consensus         2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~~g~~v~~~~~---~~~~~k~~~~a~~~g~~~~iiig~~   64 (94)
T cd00738           2 IDVAIVPLTDPRVEA-REYAQKLLNALLANGIRVLYDDR---ERKIGKKFREADLRGVPFAVVVGED   64 (94)
T ss_pred             eEEEEEECCCCcHHH-HHHHHHHHHHHHHCCCEEEecCC---CcCHhHHHHHHHhCCCCEEEEECCC
Confidence            5777665443   22 46788899999999999988764   3455555555544433466677653

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-22
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-19

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 6   SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN-DLKRGDEISQSLVDXX 64
           SSH    KYDVFLSF+G DTR NF S LY  L ++ I TF D+ +L+ G   S  L    
Sbjct: 2   SSHT-ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPI 60
Query: 65  XXXXXXXXXXXXXXXXXXWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDS 124
                             WCLDEL+ I++ +      V+P+FY V+P+HVR Q+G   + 
Sbjct: 61  EVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120
Query: 125 FSK-LEEQFPDRMQTWRIALTEAANLSG 151
           F K    + P+++  WR ALT  A LSG
Sbjct: 121 FKKHASREDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Query: 2   ASSSSSHPRNN----KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEI 56
           A S S++P  +    +Y+VFLSF+G DTR+ FT  LY +L +  I TF D+D L +G EI
Sbjct: 20  AISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEI 79
Query: 57  SQSLVDXXXXXXXXXXXXXXXXXXXXWCLDELLRILECK-TNYGQIVIPVFYRVDPSHVR 115
             +L+                     WCL EL  I+  +  +  +I++P+FY VDPS VR
Sbjct: 80  GPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVR 139
Query: 116 KQSGNFEDSFSKLEEQFPDR-MQTWRIALTEAANLSGF 152
            Q+G ++ +F K   +F  + +Q W+ AL +  +L G+
Sbjct: 140 HQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGW 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	5e-88
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	5e-87
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-71
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	2e-17
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-08
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	9e-08
2js7_A	160	Myeloid differentiation primary response protein M	3e-05
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	8e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  253 bits (649), Expect = 5e-88
 Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 4/153 (2%)

Query: 5   SSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDA 63
           SS      KYDVFLSF+G DTR NF S LY  L ++ I TF D+  L+ G   S  L   
Sbjct: 2   SSHTAT--KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSP 59

Query: 64  IEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFED 123
           IE S  ++++ SE+YA+SSWCLDEL+ I++ +      V+P+FY V+P+HVR Q+G   +
Sbjct: 60  IEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAE 119

Query: 124 SFSKLEEQF-PDRMQTWRIALTEAANLSGFDSH 155
            F K   +  P+++  WR ALT  A LSG  S 
Sbjct: 120 QFKKHASREDPEKVLKWRQALTNFAQLSGDCSG 152

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  252 bits (645), Expect = 5e-87
 Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 3/160 (1%)

Query: 2   ASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSL 60
           +++ S    + +Y+VFLSF+G DTR+ FT  LY +L +  I TF D+D L +G EI  +L
Sbjct: 24  STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILEC-KTNYGQIVIPVFYRVDPSHVRKQSG 119
           + AI+ S I + I S  YA S WCL EL  I+   + +  +I++P+FY VDPS VR Q+G
Sbjct: 84  LRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG 143

Query: 120 NFEDSFSKLEEQF-PDRMQTWRIALTEAANLSGFDSHVIR 158
            ++ +F K   +F    +Q W+ AL +  +L G+      
Sbjct: 144 CYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKND 183

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  210 bits (536), Expect = 4e-71
 Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 3/144 (2%)

Query: 2   ASSSSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDN-DLKRGDEISQSL 60
            ++++       +D+F+S   ED + +F   L   L   G E + D+  L+ GD + +S+
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 61  VDAIEASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN 120
              + +S   I++ S  +    W   EL  + + +++    ++P++++V    V   S  
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 121 FEDSFSKLEEQF-PDRMQTWRIAL 143
             D  +        D +    +A+
Sbjct: 128 MADKLAFNTSTKSVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 73.2 bits (180), Expect = 2e-17
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 13  KYDVFLSFKGEDTRDNFTSHLYSAL--SQKGIETFIDN-DLKRGDEISQSLVDAIEASSI 69
            YDV +    ED        L S L  S   +  F+   D   G  I   L  A+ +S  
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 70  SIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVFYRVD----PSHVRK----QSGNF 121
            +++ +  +    WC  ++L+ L          IP+   +     P  +R          
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGP 127

Query: 122 EDSFSKLEEQFPDRMQT 138
           +  F +++E     +QT
Sbjct: 128 DGGFRQVKEAVMRYLQT 144

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 9   PRNNKYDVFLSFKGEDTRDNFTSHLYSAL--SQKGIETFI-DNDLKRGDEISQSLVDAIE 65
            RN ++  F+S+   D      + L   L      I   + ++    G  IS+++V  IE
Sbjct: 31  KRNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIE 89

Query: 66  ASSISIIIFSESYASSSWCLDELLRILECKTNYGQI-VIPVFYRVDPSH 113
            S  SI + S ++  + WC  E         +     +I +     P +
Sbjct: 90  KSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFY 138

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 13  KYDVFLSFKGEDTR---------DNFTSHLYSAL--SQKGIETFI-DNDLKRGDEISQSL 60
            YD +LS+   D           + F   +   +     G + FI D DL       + +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 61  VDAIEASSISIIIFSESYASSS-WC-LDELLRILECKTNYGQIVIPVFYRVDPSHVRKQ 117
              ++ S   II+ + +Y     W   +   R+          VI +        +  Q
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQ 120

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 13  KYDVFLSFKGEDTRDNFTSHLYSAL--SQKGIETFI-DNDLKRGDEISQSLVDAIEASSI 69
           ++D F+ +   D +  F   +   L  +   ++  + D D+  G  +     + IE    
Sbjct: 16  RFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 73

Query: 70  -SIIIFSESYASSSWCLDELL----RILECKTNYGQIVIPVFYRVDPSHVRK 116
             +++ S+ Y  S  C  +                  +IP+ Y+        
Sbjct: 74  RMVVVVSDDYLQSKECDFQTKFALSLSPGAHQK---RLIPIKYKAMKKEFPS 122

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 10  RNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIE---TFIDNDLKRGDEISQSLVDAIEA 66
           RN  YD F+S+   D      + +   L              D   G  I  +++D+IE 
Sbjct: 2   RNIXYDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEK 60

Query: 67  SSISIIIFSESYASSSWCLDELL----RILECKTNYGQIVIPVFY 107
           S  ++ + SE++  S W   EL     R+ +   +     I +  
Sbjct: 61  SHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDA---AILILL 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.52
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.36
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	95.73
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	92.37
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	92.11
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	90.73
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	89.28

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1e-49  Score=303.68  Aligned_cols=151  Identities=41%  Similarity=0.744  Sum_probs=139.1

Q ss_pred             CCCCCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChh
Q 039184            5 SSSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSW   83 (158)
Q Consensus         5 ~~s~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~w   83 (158)
                      +|++++.++|||||||+++|.|..|+.+|+++|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|.|
T Consensus        27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W  106 (204)
T 3ozi_A           27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW  106 (204)
T ss_dssp             -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred             CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence            556678899999999999998889999999999999999999988 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh-cCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHHHHHHHHHHHhhcccceeec
Q 039184           84 CLDELLRILECKTN-YGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTWRIALTEAANLSGFDSH  155 (158)
Q Consensus        84 c~~El~~a~~~~~~-~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W~~al~~i~~~~G~~~~  155 (158)
                      |+.||..++++.++ ++.+||||||+|+|++|+.|+|.||++|.++.+.+ ++++++||.||++|++++||++.
T Consensus       107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~  180 (204)
T 3ozi_A          107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIG  180 (204)
T ss_dssp             HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred             HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecC
Confidence            99999999999764 57899999999999999999999999999999988 88999999999999999999885

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-49  Score=297.97  Aligned_cols=146  Identities=45%  Similarity=0.789  Sum_probs=126.7

Q ss_pred             CCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHH
Q 039184           10 RNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDEL   88 (158)
Q Consensus        10 ~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El   88 (158)
                      .+++|||||||+++|.|++|+.+|+++|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|+||+.||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            3678999999999998889999999999999999999988 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCceeeEEEeeCCcccccccCchHHHHHHHHhcc-hhHHHHHHHHHHHhhcccceeec
Q 039184           89 LRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQF-PDRMQTWRIALTEAANLSGFDSH  155 (158)
Q Consensus        89 ~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~-~~~~~~W~~al~~i~~~~G~~~~  155 (158)
                      ..++++.++++.+||||||+|+|++|++|+|.||++|.++.++. .+++++||+||+++++++|+++.
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC
Confidence            99999988889999999999999999999999999999999887 89999999999999999999873

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=8.1e-36  Score=219.04  Aligned_cols=136  Identities=20%  Similarity=0.347  Sum_probs=118.8

Q ss_pred             CCCCCcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHH
Q 039184            8 HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLD   86 (158)
Q Consensus         8 ~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~   86 (158)
                      ..+.++|||||||+++| ++.|+.+|+..|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+|++|++|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            35678999999999999 568999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCceeeEEEeeCCcccccccCchHHHHHHHHhcchhHHHHHHHHHHHh
Q 039184           87 ELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGNFEDSFSKLEEQFPDRMQTWRIALTEA  146 (158)
Q Consensus        87 El~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~W~~al~~i  146 (158)
                      |+..++++..+++.+||||||+++|++|+.+.|.||+.|......  +.+..+-+.|.++
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~--~~~~~ia~~l~~l  151 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST--KSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT--SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc--ccHHHHHHHHHHH
Confidence            999999887667789999999999999999999999988776654  3344444444443

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=2.2e-31  Score=194.10  Aligned_cols=132  Identities=17%  Similarity=0.307  Sum_probs=95.9

Q ss_pred             CCCCCCCcccEEEecccCcCchhHHHHHHHHHhc--CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCCh
Q 039184            6 SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQ--KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSS   82 (158)
Q Consensus         6 ~s~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~--~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~   82 (158)
                      .|+..++.|||||||+++|  ..||.+|..+|++  .|+++|+|++ +.||+.+.++|.++|++|+++|+|+|++|++|.
T Consensus         3 ~~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~   80 (146)
T 3ub2_A            3 GSSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP   80 (146)
T ss_dssp             -CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred             CCCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence            4567789999999999999  4689999999998  5999999999 999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCceeeEEEeeCCcccccccCc--------hHHHHHHHHhcchhHHHHHHHHH
Q 039184           83 WCLDELLRILECKTNYGQIVIPVFYRVDPSHVRKQSGN--------FEDSFSKLEEQFPDRMQTWRIAL  143 (158)
Q Consensus        83 wc~~El~~a~~~~~~~~~~iiPI~~~v~p~~v~~~~~~--------~~~~f~~~~~~~~~~~~~W~~al  143 (158)
                      ||..|+..|+++...+..+||||++++++++++...+.        ....|.++    .+.+.+|++||
T Consensus        81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l----~~~v~~~~~~~  145 (146)
T 3ub2_A           81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV----KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH----HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH----HHHHHHHHHhc
Confidence            99999999998753344478899999987777654432        23444444    46688998775

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=5.7e-27  Score=173.09  Aligned_cols=106  Identities=16%  Similarity=0.255  Sum_probs=93.7

Q ss_pred             CCCCCcccEEEecccCcCchhHHHHHHHHHhcC--CceEEeeCC-CCCCccchHHHHHHhH-hcceEEEEeecCCcCChh
Q 039184            8 HPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDND-LKRGDEISQSLVDAIE-ASSISIIIFSESYASSSW   83 (158)
Q Consensus         8 ~~~~~~~DVFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~-i~~G~~~~~~i~~~i~-~s~~~I~vlS~~~~~S~w   83 (158)
                      .+.++.|||||||+++|  +.||.+|...|++.  |+++|+|++ +.||+++.++|.++|+ +|+++|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            44578999999999999  58999999999984  799999999 9999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHHH-hhcCCceeeEEEeeCCcccc
Q 039184           84 CLDELLRILECK-TNYGQIVIPVFYRVDPSHVR  115 (158)
Q Consensus        84 c~~El~~a~~~~-~~~~~~iiPI~~~v~p~~v~  115 (158)
                      |..|+..|+++. .+++.+||||+|+.-+.+++
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~~~lp  121 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFP  121 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCCCCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccchhhH
Confidence            999999999874 44567999999976544444

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=3.7e-27  Score=172.15  Aligned_cols=104  Identities=20%  Similarity=0.353  Sum_probs=92.3

Q ss_pred             CCCcccEEEecccCcCchhHHHH-HHHHHhcC--CceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhHH
Q 039184           10 RNNKYDVFLSFKGEDTRDNFTSH-LYSALSQK--GIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWCL   85 (158)
Q Consensus        10 ~~~~~DVFISys~~D~~~~fv~~-L~~~L~~~--gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~   85 (158)
                      .++.|||||||+++|  ..||.+ |...|++.  |+++|+|++ +.||+++.++|.++|++|+++|+|+||+|++|.||.
T Consensus         2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            467899999999999  479986 99999986  999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhhcCCceeeEEEe-eCCcccc
Q 039184           86 DELLRILEC-KTNYGQIVIPVFYR-VDPSHVR  115 (158)
Q Consensus        86 ~El~~a~~~-~~~~~~~iiPI~~~-v~p~~v~  115 (158)
                      .|+..|+++ ..+++.+||||+|+ +++..++
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999999864 34567789999984 5555554

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=1.4e-26  Score=173.77  Aligned_cols=107  Identities=21%  Similarity=0.369  Sum_probs=89.2

Q ss_pred             CCCCCCcccEEEecccCcCchhHHHH-HHHHHhc--CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCCh
Q 039184            7 SHPRNNKYDVFLSFKGEDTRDNFTSH-LYSALSQ--KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSS   82 (158)
Q Consensus         7 s~~~~~~~DVFISys~~D~~~~fv~~-L~~~L~~--~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~   82 (158)
                      ....++.|||||||+++|  ..||.. |...|++  .|+++|+|++ +.||+++.++|.++|++|+++|+|+||+|++|.
T Consensus        29 ~~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~  106 (178)
T 2j67_A           29 QLKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE  106 (178)
T ss_dssp             -CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred             ccCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence            345788999999999999  489974 9999998  8999999999 999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHH-hhcCCceeeEEEe-eCCcccc
Q 039184           83 WCLDELLRILECK-TNYGQIVIPVFYR-VDPSHVR  115 (158)
Q Consensus        83 wc~~El~~a~~~~-~~~~~~iiPI~~~-v~p~~v~  115 (158)
                      ||..|+..|+++. .+++.+||||+|+ +.+.+++
T Consensus       107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp  141 (178)
T 2j67_A          107 WCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIP  141 (178)
T ss_dssp             GGGTHHHHTTCC-------CEEEEESSCCCGGGSC
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCC
Confidence            9999999998653 4567799999985 4444444

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=165.62  Aligned_cols=101  Identities=21%  Similarity=0.324  Sum_probs=89.1

Q ss_pred             CcccEEEecccCcC---------chhHHHHHHH-HHh-cCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184           12 NKYDVFLSFKGEDT---------RDNFTSHLYS-ALS-QKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYA   79 (158)
Q Consensus        12 ~~~DVFISys~~D~---------~~~fv~~L~~-~L~-~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~   79 (158)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|+|++ +.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999995         3678888665 699 79999999999 999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHHH-hhcCCceeeEEEeeCCc
Q 039184           80 -SSSWCLDELLRILECK-TNYGQIVIPVFYRVDPS  112 (158)
Q Consensus        80 -~S~wc~~El~~a~~~~-~~~~~~iiPI~~~v~p~  112 (158)
                       +|.||..|+..|+++. .+++.+||||+++..+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             9999999999999875 55678999999765443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=2.7e-20  Score=166.12  Aligned_cols=101  Identities=20%  Similarity=0.350  Sum_probs=90.8

Q ss_pred             CCCCcccEEEecccCcCchhHH-HHHHHHHhc-----CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCC
Q 039184            9 PRNNKYDVFLSFKGEDTRDNFT-SHLYSALSQ-----KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASS   81 (158)
Q Consensus         9 ~~~~~~DVFISys~~D~~~~fv-~~L~~~L~~-----~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S   81 (158)
                      ...+.|||||||+++|.  .|| .+|...|++     .|+++|++++ +.||+.+.++|.++|++||.+|+|+|++|++|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            45789999999999993  566 889999985     5899999999 99999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH-hhcCCceeeEEEeeCC
Q 039184           82 SWCLDELLRILECK-TNYGQIVIPVFYRVDP  111 (158)
Q Consensus        82 ~wc~~El~~a~~~~-~~~~~~iiPI~~~v~p  111 (158)
                      +||..|+..|+++. .+++.+||||+|+..|
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            99999999998774 5667899999996544

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.52  E-value=1.3e-07  Score=65.28  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=54.7

Q ss_pred             CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184           12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI   91 (158)
Q Consensus        12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a   91 (158)
                      .+|.+||||+.+| .   ...|...|.+.|+..- |              +.|+.|+++|++.++...+|+||..|+..|
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            4699999999998 2   4445555544455443 2              678999999999999999999999999999


Q ss_pred             HHHHhhcCCceeeEE
Q 039184           92 LECKTNYGQIVIPVF  106 (158)
Q Consensus        92 ~~~~~~~~~~iiPI~  106 (158)
                      .+    .+.+||-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            54    344666665

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.36  E-value=0.00064  Score=50.45  Aligned_cols=83  Identities=17%  Similarity=0.104  Sum_probs=61.4

Q ss_pred             ccCcCchhHHHHHHHHHhcCCceEEeeCC-CC-------C-CccchHHHHHHhHhcceEEEEeecCCcCChhHHHHHHHH
Q 039184           21 KGEDTRDNFTSHLYSALSQKGIETFIDND-LK-------R-GDEISQSLVDAIEASSISIIIFSESYASSSWCLDELLRI   91 (158)
Q Consensus        21 s~~D~~~~fv~~L~~~L~~~gi~v~~d~~-i~-------~-G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a   91 (158)
                      +.+|  ......|..--.+...--|.|-. ..       . -..|...|.+.|..|+.+|+++|++..+|.|...|++.|
T Consensus        27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            4566  45667776666665555556653 31       2 235778899999999999999999999999999999999


Q ss_pred             HHHHhhcCCceeeEEEe
Q 039184           92 LECKTNYGQIVIPVFYR  108 (158)
Q Consensus        92 ~~~~~~~~~~iiPI~~~  108 (158)
                      ++   +.+.+||-|..+
T Consensus       105 i~---~~~~PII~Vy~~  118 (189)
T 3hyn_A          105 IG---TKGLPVIVIYPD  118 (189)
T ss_dssp             TT---TTCCCEEEEETT
T ss_pred             HH---hcCCcEEEEECC
Confidence            72   245688888754

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=95.73  E-value=0.043  Score=39.73  Aligned_cols=70  Identities=13%  Similarity=0.100  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCC--CCCCccchHHHHHHhHhcceEEEEeec--CCcCChhHHHHHHHHHHHHh
Q 039184           27 DNFTSHLYSALSQKGIETFIDND--LKRGDEISQSLVDAIEASSISIIIFSE--SYASSSWCLDELLRILECKT   96 (158)
Q Consensus        27 ~~fv~~L~~~L~~~gi~v~~d~~--i~~G~~~~~~i~~~i~~s~~~I~vlS~--~~~~S~wc~~El~~a~~~~~   96 (158)
                      ..+...+.+.|++.|+.|++..+  ...+..+.+.=.++|++|+++|++++|  .-..+.-+..|+..|....+
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK   99 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   99 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC
Confidence            47889999999999999988554  222223333337899999999999997  44456678899999987654

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=92.37  E-value=0.9  Score=32.53  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=54.3

Q ss_pred             CCcccEEEecccC-cC-chhHHHHHHHHHhcCCceEEeeCCCCCCc-----c-------chHHHHHHhHhcceEEEEeec
Q 039184           11 NNKYDVFLSFKGE-DT-RDNFTSHLYSALSQKGIETFIDNDLKRGD-----E-------ISQSLVDAIEASSISIIIFSE   76 (158)
Q Consensus        11 ~~~~DVFISys~~-D~-~~~fv~~L~~~L~~~gi~v~~d~~i~~G~-----~-------~~~~i~~~i~~s~~~I~vlS~   76 (158)
                      ++...|||+=.-. +. .......+.+.|++.| .|+.+....|..     .       +...-.+.|++|+++|++++ 
T Consensus         9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A            9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            3445699984322 11 1225589999999999 886554332221     1       11222478999999999997 


Q ss_pred             CCcCChhHHHHHHHHHHHHh
Q 039184           77 SYASSSWCLDELLRILECKT   96 (158)
Q Consensus        77 ~~~~S~wc~~El~~a~~~~~   96 (158)
                        ..+.-+..|+..|....+
T Consensus        87 --~~d~Gt~~EiGyA~algK  104 (165)
T 2khz_A           87 --QPSLGVGYELGRAVALGK  104 (165)
T ss_dssp             --SCCHHHHHHHHHHHHTCS
T ss_pred             --CCCCCHHHHHHHHHHCCC
Confidence              567888999999976544

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=92.11  E-value=0.71  Score=33.29  Aligned_cols=69  Identities=10%  Similarity=0.112  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHhcC--CceEEeeCC-CC----CCccchHHH----HHHhHhcceEEEEeecCCcCChhHHHHHHHHHHHH
Q 039184           27 DNFTSHLYSALSQK--GIETFIDND-LK----RGDEISQSL----VDAIEASSISIIIFSESYASSSWCLDELLRILECK   95 (158)
Q Consensus        27 ~~fv~~L~~~L~~~--gi~v~~d~~-i~----~G~~~~~~i----~~~i~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~   95 (158)
                      .++..++.+.|+.+  |+.+|...+ -.    ++..+...|    .++|++|+++|.++. ....+..+..|+..|....
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g   97 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG   97 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence            46788899999875  899988655 22    223344344    467999999999994 4456788999999998754


Q ss_pred             h
Q 039184           96 T   96 (158)
Q Consensus        96 ~   96 (158)
                      +
T Consensus        98 k   98 (162)
T 3ehd_A           98 I   98 (162)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=90.73  E-value=1.4  Score=31.38  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             cEEEec--ccCcCchhHHHHHHHHHhcCCceEEeeCCCC------CCc-------cchHHHHHHhHhcceEEEEeecCCc
Q 039184           15 DVFLSF--KGEDTRDNFTSHLYSALSQKGIETFIDNDLK------RGD-------EISQSLVDAIEASSISIIIFSESYA   79 (158)
Q Consensus        15 DVFISy--s~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~------~G~-------~~~~~i~~~i~~s~~~I~vlS~~~~   79 (158)
                      -|||+=  .+.+...++...+.+.|++.| .|+. ..+.      .|+       .+.+.-.++|++|+++|++++   .
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~-~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~   78 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLT-EHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---Q   78 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECC-CC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---S
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccc-cccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---C
Confidence            366652  232223478899999999999 6753 2221      121       134445588999999999998   6


Q ss_pred             CChhHHHHHHHHHHHHh
Q 039184           80 SSSWCLDELLRILECKT   96 (158)
Q Consensus        80 ~S~wc~~El~~a~~~~~   96 (158)
                      .|.-...|+..|....+
T Consensus        79 ~d~Gt~~EiG~A~algk   95 (152)
T 4fyk_A           79 PSLGVGYELGRAVALGK   95 (152)
T ss_dssp             CCHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHcCC
Confidence            67788999999987543

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=89.28  E-value=1.6  Score=31.51  Aligned_cols=79  Identities=9%  Similarity=0.135  Sum_probs=54.5

Q ss_pred             cEEEe---cccCcCchhHHHHHHHHHhcC--CceEEeeCC--C--------CCC----c----cchHHHHHHhHhcceEE
Q 039184           15 DVFLS---FKGEDTRDNFTSHLYSALSQK--GIETFIDND--L--------KRG----D----EISQSLVDAIEASSISI   71 (158)
Q Consensus        15 DVFIS---ys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~--i--------~~G----~----~~~~~i~~~i~~s~~~I   71 (158)
                      .||+.   |+..+  ..+..++.+.|++.  |+.+|...+  .        ..|    .    .+.+.=.++|++|+++|
T Consensus         9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV   86 (167)
T 1s2d_A            9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence            47776   33332  46889999999999  889987544  2        111    1    12233347899999999


Q ss_pred             EEeecCCcCChhHHHHHHHHHHHHh
Q 039184           72 IIFSESYASSSWCLDELLRILECKT   96 (158)
Q Consensus        72 ~vlS~~~~~S~wc~~El~~a~~~~~   96 (158)
                      +++.+. ..+.-+..|+..|....+
T Consensus        87 A~ldg~-~~D~GTa~EiGyA~algK  110 (167)
T 1s2d_A           87 FLYDMD-QLDDGSAFXIGFMRAMHK  110 (167)
T ss_dssp             EEEESS-SCCHHHHHHHHHHHHTTC
T ss_pred             EECCCC-CCCCCceeehhhHhhCCC
Confidence            999863 346778899999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-20
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	5e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 3e-20
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 6   SSHPRNNKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFI-DNDLKRGDEISQSLVDAI 64
               RN ++  F+S+ G D+     + L   L ++G++  + + +   G  I ++++  I
Sbjct: 5   EELQRNLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCI 63

Query: 65  EASSISIIIFSESYASSSWCLDELLRILECKTNYGQIV-IPVFYRVDPSHVRKQS 118
           E S  SI + S ++  S WC  EL        + G    I +     P +    S
Sbjct: 64  EKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 5e-18
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 10  RNNKYDVFLSFKGEDTRDNFTSHLYSAL--SQKGIETFI-DNDLKRGDEISQSLVDAIEA 66
           RN  YD F+S+   D      + +   L       +  +   D   G  I  +++D+IE 
Sbjct: 2   RNICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEK 60

Query: 67  SSISIIIFSESYASSSWCLDEL-LRILECKTNYGQIVIPVFYRVDPSHVRKQS 118
           S  ++ + SE++  S WC  EL               I +           Q 
Sbjct: 61  SHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQR 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.92
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.92
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	96.1
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	94.11
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	92.01
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	90.1
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	85.83
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	84.72
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	83.97
d1eiwa_	111	Hypothetical protein MTH538 {Archaeon Methanobacte	82.55

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-26  Score=167.62  Aligned_cols=103  Identities=22%  Similarity=0.427  Sum_probs=92.1

Q ss_pred             CCCCCCCcccEEEecccCcCchhHH-HHHHHHHhcCCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChh
Q 039184            6 SSHPRNNKYDVFLSFKGEDTRDNFT-SHLYSALSQKGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSW   83 (158)
Q Consensus         6 ~s~~~~~~~DVFISys~~D~~~~fv-~~L~~~L~~~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~w   83 (158)
                      .....+++|||||||+++|  ..|| ..|...|+++|+++|+|.+ +.||+.+.++|.++|++|+++|+|+|++|+.|.|
T Consensus         5 ~~~~~~~~yDvFisys~~D--~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w   82 (161)
T d1fyva_           5 EELQRNLQFHAFISYSGHD--SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEW   82 (161)
T ss_dssp             TTSSSCCCEEEEEECCGGG--HHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTS
T ss_pred             hHcCCCCeeEEEEecChhH--HHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChH
Confidence            3456789999999999999  4566 6799999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-hhcCCceeeEEEeeC
Q 039184           84 CLDELLRILECK-TNYGQIVIPVFYRVD  110 (158)
Q Consensus        84 c~~El~~a~~~~-~~~~~~iiPI~~~v~  110 (158)
                      |..|+..|+++. .++..++|||+++..
T Consensus        83 ~~~E~~~a~~~~~~~~~~~lIpV~l~~~  110 (161)
T d1fyva_          83 CHYELYFAHHNLFHEGSNSLILILLEPI  110 (161)
T ss_dssp             HHHHHHTTSCCCSCSSCSSEEEEESSCC
T ss_pred             HHHHHHHHHHHHHHcCCCceeEEEEecC
Confidence            999999998764 456679999998643

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-26  Score=164.14  Aligned_cols=106  Identities=21%  Similarity=0.384  Sum_probs=91.7

Q ss_pred             CCCCcccEEEecccCcCchhHH-HHHHHHHhc--CCceEEeeCC-CCCCccchHHHHHHhHhcceEEEEeecCCcCChhH
Q 039184            9 PRNNKYDVFLSFKGEDTRDNFT-SHLYSALSQ--KGIETFIDND-LKRGDEISQSLVDAIEASSISIIIFSESYASSSWC   84 (158)
Q Consensus         9 ~~~~~~DVFISys~~D~~~~fv-~~L~~~L~~--~gi~v~~d~~-i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~~S~wc   84 (158)
                      +.++.|||||||+++|  +.|| ..|...|++  .|+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus         1 ~~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            3578999999999999  4566 568999986  4999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hhcCCceeeEEEe-eCCccccc
Q 039184           85 LDELLRILECK-TNYGQIVIPVFYR-VDPSHVRK  116 (158)
Q Consensus        85 ~~El~~a~~~~-~~~~~~iiPI~~~-v~p~~v~~  116 (158)
                      ..|+..|+.+. ++++.++|||+++ ++..++++
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~~  112 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ  112 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSCS
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCchhhcch
Confidence            99999987664 5577899999985 44445543

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.10  E-value=0.015  Score=40.06  Aligned_cols=71  Identities=13%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             chhHHHHHHHHHhcCCceEEeeCC--CCCCccchHHHHHHhHhcceEEEEeec--CCcCChhHHHHHHHHHHHHh
Q 039184           26 RDNFTSHLYSALSQKGIETFIDND--LKRGDEISQSLVDAIEASSISIIIFSE--SYASSSWCLDELLRILECKT   96 (158)
Q Consensus        26 ~~~fv~~L~~~L~~~gi~v~~d~~--i~~G~~~~~~i~~~i~~s~~~I~vlS~--~~~~S~wc~~El~~a~~~~~   96 (158)
                      +..+...+...|+..|+.++...+  ......+.+.-.++|++|+++|++++|  .-..+.-+..|+..|....+
T Consensus        17 ~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          17 GASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             THHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            357889999999999999997554  333344556666899999999999985  33456778999999987654

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.11  E-value=0.096  Score=32.63  Aligned_cols=61  Identities=18%  Similarity=0.246  Sum_probs=44.7

Q ss_pred             CcccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeec
Q 039184           12 NKYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSE   76 (158)
Q Consensus        12 ~~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~   76 (158)
                      ...+|||..-++.. ...+..|...|++.|+++-+|..   +.++...+..|-..---+++++.+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCC
Confidence            35789999988775 57899999999999999998764   445666666666543334555543

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.01  E-value=0.75  Score=31.27  Aligned_cols=87  Identities=13%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             cccEEEec---ccCcCchhHHHHHHHHHhcCC--ceEEeeCC--CC------------CCccch----HHHHHHhHhcce
Q 039184           13 KYDVFLSF---KGEDTRDNFTSHLYSALSQKG--IETFIDND--LK------------RGDEIS----QSLVDAIEASSI   69 (158)
Q Consensus        13 ~~DVFISy---s~~D~~~~fv~~L~~~L~~~g--i~v~~d~~--i~------------~G~~~~----~~i~~~i~~s~~   69 (158)
                      +..|||+=   +..  ..+++..+.+.|++.|  +.+|...+  ..            ....+.    ..=.++|++|++
T Consensus         7 ~~kIYLAgP~F~~~--~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~   84 (167)
T d1s2da_           7 TGKIYLGSPFYSDA--QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATC   84 (167)
T ss_dssp             CEEEEEECCCSSHH--HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSE
T ss_pred             CceEEEECCCCCHH--HHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence            45577763   322  2578899999999988  56764321  10            011122    223368999999


Q ss_pred             EEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEE
Q 039184           70 SIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVF  106 (158)
Q Consensus        70 ~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~  106 (158)
                      +|+++..... +.-+..|+..|....+    +||.+-
T Consensus        85 vIA~ldg~~~-D~GTa~EiG~A~a~gK----Pvi~~~  116 (167)
T d1s2da_          85 GVFLYDMDQL-DDGSAFEIGFMRAMHK----PVILVP  116 (167)
T ss_dssp             EEEEEESSSC-CHHHHHHHHHHHHTTC----CEEEEE
T ss_pred             EEEEeCCCCC-CccHHHHHHHHHHCCC----eEEEEe
Confidence            9999987653 4567889999987654    665544

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=90.10  E-value=0.43  Score=32.34  Aligned_cols=87  Identities=14%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             cccEEEe---cccCcCchhHHHHHHHHHhcC----CceEEeeCC-----CCCCc--------c----chHHHHHHhHhcc
Q 039184           13 KYDVFLS---FKGEDTRDNFTSHLYSALSQK----GIETFIDND-----LKRGD--------E----ISQSLVDAIEASS   68 (158)
Q Consensus        13 ~~DVFIS---ys~~D~~~~fv~~L~~~L~~~----gi~v~~d~~-----i~~G~--------~----~~~~i~~~i~~s~   68 (158)
                      +..||+.   |+..+  ..+..++.+.|++.    |+.+|...+     ...+.        .    +...=.++|++|+
T Consensus         2 ~k~IYlAgP~F~~~q--~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD   79 (156)
T d1f8ya_           2 KKTIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND   79 (156)
T ss_dssp             CBCEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSS
T ss_pred             CceEEEECCCCCHHH--HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCC
Confidence            3456766   33443  57788999999874    666665322     11111        1    2223357899999


Q ss_pred             eEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEE
Q 039184           69 ISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVF  106 (158)
Q Consensus        69 ~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~  106 (158)
                      ++|+++.... .+.-+..|+..|....+    +||-+.
T Consensus        80 ~via~ldg~~-~D~Gta~EiG~A~a~gK----pvi~~~  112 (156)
T d1f8ya_          80 IMLGVYIPDE-EDVGLGMELGYALSQGK----YVLLVI  112 (156)
T ss_dssp             EEEEECCGGG-CCHHHHHHHHHHHHTTC----EEEEEE
T ss_pred             EEEEEeCCCC-CCCCHHHHHHHHHHcCC----cEEEEe
Confidence            9999998643 45668889999987654    555443

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.83  E-value=0.72  Score=28.05  Aligned_cols=59  Identities=20%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEee
Q 039184           13 KYDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFS   75 (158)
Q Consensus        13 ~~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS   75 (158)
                      ..||||.--+++. ...+..|...|++.|+++-+|..   +.++...+..|-..---+++++.
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG   62 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIG   62 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC---CCCHHHHHHHHHhcCCCEEEEEc
Confidence            4799998766553 57889999999999999988754   34555566666664333555554

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=0.91  Score=27.82  Aligned_cols=57  Identities=18%  Similarity=0.409  Sum_probs=40.7

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHhcC--CceEEeeCCCCCCccchHHHHHHhH-hcceEEEEe
Q 039184           13 KYDVFLSFKGEDTRDNFTSHLYSALSQK--GIETFIDNDLKRGDEISQSLVDAIE-ASSISIIIF   74 (158)
Q Consensus        13 ~~DVFISys~~D~~~~fv~~L~~~L~~~--gi~v~~d~~i~~G~~~~~~i~~~i~-~s~~~I~vl   74 (158)
                      ..||||..-+++. ...+-.|...|++.  |+++-+|..   +.++...+..|-. +++.+ +++
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~---~~~l~kq~k~A~~~~~~~~-iii   62 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVA-VVL   62 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEE-EEC
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC---CCCHHHHHHHHHHhCCChh-hhc
Confidence            5799998877664 57889999999876  999988754   3456666666665 45544 444

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.97  E-value=2.1  Score=26.64  Aligned_cols=62  Identities=13%  Similarity=0.190  Sum_probs=40.4

Q ss_pred             ccEEEecccCcCchhHHHHHHHHHhcCCceEEeeCCCCCCccchHHHHHHhHhcceEEEEeecCCc
Q 039184           14 YDVFLSFKGEDTRDNFTSHLYSALSQKGIETFIDNDLKRGDEISQSLVDAIEASSISIIIFSESYA   79 (158)
Q Consensus        14 ~DVFISys~~D~~~~fv~~L~~~L~~~gi~v~~d~~i~~G~~~~~~i~~~i~~s~~~I~vlS~~~~   79 (158)
                      ++|.|.--+++ ...++..|+..|++.|+++-+|.+   +..+...+.++-..---.++++.++=+
T Consensus         8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~~ki~~a~~~g~p~~iiiG~~E~   69 (110)
T d1qf6a1           8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGDKEV   69 (110)
T ss_dssp             SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECTTTG
T ss_pred             ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccCC---ccchhHHHHHHHHcCCCEEEEECchHH
Confidence            66777543333 357899999999999999999876   333444555555533335566665543

>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Hypothetical protein MTH538
family: Hypothetical protein MTH538
domain: Hypothetical protein MTH538
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.55  E-value=0.31  Score=31.38  Aligned_cols=38  Identities=13%  Similarity=0.011  Sum_probs=31.0

Q ss_pred             HhcceEEEEeecCCcCChhHHHHHHHHHHHHhhcCCceeeEE
Q 039184           65 EASSISIIIFSESYASSSWCLDELLRILECKTNYGQIVIPVF  106 (158)
Q Consensus        65 ~~s~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPI~  106 (158)
                      ++++++|++.......|+|...|+..|...    +.+||-|.
T Consensus        37 ~~~~vvIVL~G~yt~~r~WI~~EI~~A~~~----~KpIIgV~   74 (111)
T d1eiwa_          37 EDADAVIVLAGLWGTRRDEILGAVDLARKS----SKPIITVR   74 (111)
T ss_dssp             SSCSEEEEEGGGTTTSHHHHHHHHHHHTTT----TCCEEEEC
T ss_pred             cCCCEEEEEeeccccCCHHHHHHHHHHHHc----CCCeEEEE
Confidence            788888888888888999999999999653    44666654