Citrus Sinensis ID: 039199

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MSITASQQSFLTNALVTTHRPRTKIVTCVKVISCTNRHDDQKYSSRKNDNQLAKLAVVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSREDEEDY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccccccccccEEEcccEEEEccccccccccccccHHHHHHHHHHHHHHHHEEEccccccHHcccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSITASQQSFLTNALvtthrprtkiVTCVKVisctnrhddqkyssrkndNQLAKLAVVTLAAGVLTMGSVGDavaaksggrvggqafrpsaprsaprsygnsrtniyinppvapplvggygygsyyggwgwspfsffvpgpsvaiglgGGFDLLALFLFLGAAAAVVRKFfgsredeedy
Flexible Loop (DISEMBL)
msitasqqsfltnalvtthrprtkivTCVKVIsctnrhddqkyssrkndnqLAKLAVVTLAAGVLTMGSVGDAVAAKSggrvggqafrpsaprsaprsygnsrtniyinppVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFgsredeedy
Low Complexity Region (SEG)
MSITASQQSFLTNALVTTHRPRTKIVTCVKVISCTNRHDDQKYSSRKNDNQLAKLAVVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVggygygsyyggwgwsPFSFFVPGPSVAIglgggfdllalflflgaaaaVVRKFFGSREDEEDY
Disordered region (IsUnstruct)
*********FLTNALVTTHRPRTKIVTCVKVISCTNR*************QLAKLAVVTLAAGVLTMGSVGDAVA****************************TNIYINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFF*********
Disordered Region (DISOPRED)
*******QSFLTNALVT*************************************LAVVTLAAGVLTMGSVGDA*********************************YINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVR************
Disordered Region (DISEMBL)
MSITASQQSFLTNALVTTHRPRTKIVTCVKVISCTNRHDDQKYSSRKNDNQLAKLAVVTLAAGVLTMGSVGDAVAAK**********************GNSRTNIYINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFG********
Disordered Region (DISPRO)
*SI****QSFLTNALVTTHRPRTKIVTCVKVISCTNRH***KYSSRKNDNQLAKLAVVTLAAGVLTMGSVGD****************************NSRTNIYINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGS*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSITASQQSFLTNALVTTHRPRTKIVTCVKVISCTNRHDDQKYSSRKNDNQLAKLAVVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSREDEEDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
224126023	188	predicted protein [Populus trichocarpa]	0.994	0.952	0.673	1e-59
118486027	188	unknown [Populus trichocarpa]	0.994	0.952	0.668	5e-59
118489580	188	unknown [Populus trichocarpa x Populus d	0.994	0.952	0.673	6e-59
255582607	184	conserved hypothetical protein [Ricinus	0.983	0.961	0.650	1e-56
225446014	186	PREDICTED: uncharacterized protein LOC10	1.0	0.967	0.654	6e-56
351724585	189	uncharacterized protein LOC100500282 [Gl	0.988	0.941	0.643	1e-55
359806533	176	uncharacterized protein LOC100809961 [Gl	0.95	0.971	0.627	2e-47
18423968	188	uncharacterized protein [Arabidopsis tha	0.977	0.936	0.626	7e-45
297796633	188	hypothetical protein ARALYDRAFT_495834 [	0.977	0.936	0.615	5e-44
195639250	190	hypothetical protein [Zea mays]	0.961	0.910	0.589	9e-42

>gi|224126023|ref|XP_002329642.1| predicted protein [Populus trichocarpa] gi|222870523|gb|EEF07654.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 146/187 (78%), Gaps = 8/187 (4%)

Query: 1   MSITASQQSFLTNALVT--THRPRTKIVTCVKVISCTNRHDDQK--YSSRKNDNQLAKLA 56
           M+I + QQSFLTNAL+T   H+P+T  +  V ++SC    DDQK  +SSRK  +QLAK A
Sbjct: 3   MAIASFQQSFLTNALITPLLHKPKTNFLNSVPIVSCNYSRDDQKDSFSSRKTVDQLAKFA 62

Query: 57  VVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPL 116
           VVTLAAGVL +GSVGDA AAKSGGRVGGQAFR SAPRSAPR   NSRTNIY+NPPVAPPL
Sbjct: 63  VVTLAAGVLAVGSVGDASAAKSGGRVGGQAFRSSAPRSAPRINNNSRTNIYVNPPVAPPL 122

Query: 117 VG---GYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGS 173
           VG         +YGGWGWSPFSFF PGPS A+G+GGGF+ L  F+F+GA AAVVR+FFGS
Sbjct: 123 VGGYGYGYGVPFYGGWGWSPFSFFAPGPSAAVGIGGGFETLVFFVFIGAVAAVVRRFFGS 182

Query: 174 REDEEDY 180
           R DE+DY
Sbjct: 183 R-DEDDY 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486027|gb|ABK94857.1| unknown [Populus trichocarpa]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 145/187 (77%), Gaps = 8/187 (4%)

Query: 1   MSITASQQSFLTNALVT--THRPRTKIVTCVKVISCTNRHDDQK--YSSRKNDNQLAKLA 56
           M+I + QQ FLTNAL+T   H+P+T  +  V ++SC    DDQK  +SSRK  +QLAK A
Sbjct: 3   MAIASFQQGFLTNALITPLLHKPKTNFLNSVPIVSCNYSRDDQKDSFSSRKTVDQLAKFA 62

Query: 57  VVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPL 116
           VVTLAAGVL +GSVGDA AAKSGGRVGGQAFR SAPRSAPR   NSRTNIY+NPPVAPPL
Sbjct: 63  VVTLAAGVLAVGSVGDASAAKSGGRVGGQAFRSSAPRSAPRINNNSRTNIYVNPPVAPPL 122

Query: 117 VG---GYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGS 173
           VG         +YGGWGWSPFSFF PGPS A+G+GGGF+ L  F+F+GA AAVVR+FFGS
Sbjct: 123 VGGYGYGYGVPFYGGWGWSPFSFFAPGPSAAVGIGGGFETLVFFVFIGAVAAVVRRFFGS 182

Query: 174 REDEEDY 180
           R DE+DY
Sbjct: 183 R-DEDDY 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489580|gb|ABK96592.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 145/187 (77%), Gaps = 8/187 (4%)

Query: 1   MSITASQQSFLTNALVT--THRPRTKIVTCVKVISCTNRHDDQK--YSSRKNDNQLAKLA 56
           M+I + QQSFL+NAL+T   H+P+T     V ++SC    DDQK   SSRK  +QLAK A
Sbjct: 3   MAIASFQQSFLSNALITPLLHKPKTNFFNSVPIVSCNYSRDDQKDSCSSRKTVDQLAKFA 62

Query: 57  VVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPL 116
           VVTLAAGVL +GSVGDA AAKSGGRVGGQAFR SAPRSAPR   NSRTNIY+NPPVAPPL
Sbjct: 63  VVTLAAGVLAVGSVGDASAAKSGGRVGGQAFRSSAPRSAPRINNNSRTNIYVNPPVAPPL 122

Query: 117 VG---GYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGS 173
           VG         +YGGWGWSPFSFF PGPSVA+G+GGGF+ L  F+F+GA AAVVR+FFGS
Sbjct: 123 VGGYGYGYGVPFYGGWGWSPFSFFAPGPSVAVGIGGGFETLVFFMFIGAMAAVVRRFFGS 182

Query: 174 REDEEDY 180
           R DE+DY
Sbjct: 183 R-DEDDY 188

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582607|ref|XP_002532085.1| conserved hypothetical protein [Ricinus communis] gi|223528245|gb|EEF30299.1| conserved hypothetical protein [Ricinus communis]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/183 (65%), Positives = 143/183 (78%), Gaps = 6/183 (3%)

Query: 1   MSITASQQSFLTNALV-TTHRPRTKIVTCVKVISCTNRHDDQKYSSR-KNDNQLAKLAVV 58
           ++I +SQ SF  N+L     +P+TK+V+    ISC +  DD   S R K +N+LAKLA+V
Sbjct: 3   IAIASSQHSFFANSLAPLIQKPKTKLVST-STISCKHSQDDHNDSGRTKRENKLAKLAIV 61

Query: 59  TLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVG 118
           TLAAGVLT+GSVGDA AAKSGGRVGGQAFR SAPRS+PR   NSRTNIY+NPPVAPPLVG
Sbjct: 62  TLAAGVLTLGSVGDASAAKSGGRVGGQAFRSSAPRSSPRINNNSRTNIYVNPPVAPPLVG 121

Query: 119 ---GYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSRE 175
                    +YGGWGWSPFSFF PGP VA+G+GGGFD L LF+FLGAAAAV+R+FFGSR+
Sbjct: 122 GYGYGYGVPFYGGWGWSPFSFFAPGPGVAVGIGGGFDTLVLFMFLGAAAAVIRRFFGSRD 181

Query: 176 DEE 178
           ++E
Sbjct: 182 EDE 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446014|ref|XP_002268720.1| PREDICTED: uncharacterized protein LOC100249657 [Vitis vinifera] gi|297735416|emb|CBI17856.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 146/185 (78%), Gaps = 5/185 (2%)

Query: 1   MSITASQQSFLTNALVTTHRPRTKIVTCV-KVISCTNRHDD-QKYSSRKNDNQLAKLAVV 58
           MSI  SQQSF  NAL +TH P+  I T V   ISC +  DD    S RK +NQLAKLA+V
Sbjct: 1   MSIALSQQSFFFNALSSTHFPKRNIFTSVTSTISCRSPSDDCDGDSPRKRENQLAKLAMV 60

Query: 59  TLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVG 118
           TLAAGVLT+GSV +A AAK+GGR+GGQAFR + PR++     NSRTNIYINPPVAPPLVG
Sbjct: 61  TLAAGVLTLGSVHEASAAKTGGRIGGQAFRSAPPRASSPRINNSRTNIYINPPVAPPLVG 120

Query: 119 GYGYGS---YYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSRE 175
           GYG+G    +YGGWGWSPFSFF PGPSVAIG+GGGF++L LF+FLGA AAV+R+F GS++
Sbjct: 121 GYGFGYGVPFYGGWGWSPFSFFAPGPSVAIGVGGGFEVLVLFMFLGAVAAVIRRFAGSKD 180

Query: 176 DEEDY 180
           +++DY
Sbjct: 181 EDDDY 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724585|ref|NP_001235783.1| uncharacterized protein LOC100500282 [Glycine max] gi|255629930|gb|ACU15317.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 150/188 (79%), Gaps = 10/188 (5%)

Query: 2   SITASQQSFLTNALV-TTHRP--RTKIV--TCVKVISCTN-RHDDQKYSSRKNDNQLAKL 55
           SI +S QSFLTNAL+  TH P  RT +   + +K +SC++ +H+ Q+   +KN+N+LAKL
Sbjct: 3   SIASSHQSFLTNALIPLTHNPKFRTTVTFPSSLKTVSCSSPQHEQQQSPRKKNENKLAKL 62

Query: 56  AVVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPP 115
           A+V LAAGVLT+GSV DA AAK+GGR+GGQAF+ +APRS+PR   NSRTNIYINP VAPP
Sbjct: 63  AIVALAAGVLTLGSVHDASAAKTGGRIGGQAFKSAAPRSSPR-INNSRTNIYINPRVAPP 121

Query: 116 LVGGYGYGSYYGG---WGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFG 172
           LVGGYGYG        WGWSPFSFF PGPSVA+G+GGGFD + LF+FLGAAAAVVR+FFG
Sbjct: 122 LVGGYGYGYGVPFYGGWGWSPFSFFAPGPSVAVGVGGGFDTILLFMFLGAAAAVVRRFFG 181

Query: 173 SREDEEDY 180
           SR +++DY
Sbjct: 182 SRNEDDDY 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806533|ref|NP_001241516.1| uncharacterized protein LOC100809961 [Glycine max] gi|255633768|gb|ACU17244.1| unknown [Glycine max]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/180 (62%), Positives = 139/180 (77%), Gaps = 9/180 (5%)

Query: 1   MSITASQQSFLTNALVTTHRPRTKIVTCVKVISCTNRHDDQKYSSRKNDNQLAKLAVVTL 60
           +SI +S QSFLTNAL+    P     T + ++SC++    Q    + N+N+LAKLA+V +
Sbjct: 6   ISIASSHQSFLTNALI----PPKFRTTRISIVSCSS--PQQSPRKKNNENKLAKLAMVAV 59

Query: 61  AAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVGGY 120
           A GVLT+GSV DA AAK+GGR+GGQAF+ +APRSAPR   NSRTNIYINP VAPPLVGGY
Sbjct: 60  AVGVLTLGSVHDASAAKTGGRIGGQAFKSAAPRSAPR-INNSRTNIYINPRVAPPLVGGY 118

Query: 121 GYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSREDEEDY 180
           GYG     WGWSPFSFF PGPSVA+G+GGGFD + LF+FLG AAAVVR+FFGSR +++DY
Sbjct: 119 GYGYGG--WGWSPFSFFAPGPSVAVGVGGGFDTILLFMFLGVAAAVVRRFFGSRNEDDDY 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423968|ref|NP_568854.1| uncharacterized protein [Arabidopsis thaliana] gi|21593475|gb|AAM65442.1| unknown [Arabidopsis thaliana] gi|98960955|gb|ABF58961.1| At5g57345 [Arabidopsis thaliana] gi|332009505|gb|AED96888.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 138/182 (75%), Gaps = 6/182 (3%)

Query: 2   SITASQQSFLTNALVTTH--RPRTKI-VTCVKVISC-TNRHDDQKYSSRKNDNQLAKLAV 57
           +I +S+QSFL+N     H  +P++ + +T    I C ++ HDD+  SSRKN+NQLAKLA+
Sbjct: 5   AIASSRQSFLSNNFSFQHSFKPKSNVNLTRPNSICCKSSHHDDETDSSRKNENQLAKLAI 64

Query: 58  VTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLV 117
            TLA GVL +GSVGDA AAKSGGR+GGQAFR SAPR  PR    SRTNIY+NP VAPPL+
Sbjct: 65  ATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPRPPPRINNRSRTNIYVNPQVAPPLI 124

Query: 118 GGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSREDE 177
           GGYGYG      GWSPFSFF PGP+VA+G+GGGFDLL LF+F GAA+AV R FF SR DE
Sbjct: 125 GGYGYGYGGY--GWSPFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARNFFRSRNDE 182

Query: 178 ED 179
           +D
Sbjct: 183 DD 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796633|ref|XP_002866201.1| hypothetical protein ARALYDRAFT_495834 [Arabidopsis lyrata subsp. lyrata] gi|297312036|gb|EFH42460.1| hypothetical protein ARALYDRAFT_495834 [Arabidopsis lyrata subsp. lyrata]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/182 (61%), Positives = 139/182 (76%), Gaps = 6/182 (3%)

Query: 2   SITASQQSFLTNALVTTH--RPRTKI-VTCVKVISC-TNRHDDQKYSSRKNDNQLAKLAV 57
           ++ +++QSFL+N+    H  +P++ + +T    I C ++ HDD+  SSRKN+NQLAKLA+
Sbjct: 5   AVASTRQSFLSNSFSFRHSFKPKSNVNLTRPNSICCKSSHHDDETDSSRKNENQLAKLAI 64

Query: 58  VTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLV 117
            TLA GVL  GSVGDA AAKSGGR+GGQAFR SAPR  PR    SRTNIY+NPPVAPPL+
Sbjct: 65  ATLAVGVLAFGSVGDAFAAKSGGRIGGQAFRSSAPRPPPRINNRSRTNIYVNPPVAPPLI 124

Query: 118 GGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSREDE 177
           GGYGYG     +G SPFSFF PGP+VA+G+GGGFDLL LF+F GAA+AV R FF SR DE
Sbjct: 125 GGYGYGYGG--YGLSPFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARNFFRSRNDE 182

Query: 178 ED 179
           +D
Sbjct: 183 DD 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195639250|gb|ACG39093.1| hypothetical protein [Zea mays]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/185 (58%), Positives = 123/185 (66%), Gaps = 12/185 (6%)

Query: 5   ASQQSFLTNA--LVTTHRPRTKIVTCVKVISCTNRHDDQKY--SSRKND---NQLAKLAV 57
           A  Q FLT++   V T  P  K       ISC    DD+    SS  +D    QL KLA+
Sbjct: 6   APLQCFLTSSRPAVCTATPPNKRARRPSRISCRASGDDKDKVPSSGGSDLGVKQLGKLAM 65

Query: 58  VTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLV 117
           V LAAGVL +G V  AVAAKSGGRVGGQAFR SAPRS+     NSRTNIYINPPVAPPL 
Sbjct: 66  VALAAGVLVLGPVDGAVAAKSGGRVGGQAFR-SAPRSSGPRINNSRTNIYINPPVAPPL- 123

Query: 118 GGYGYGS-YYGGWG--WSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSR 174
           GGYGYGS ++GG+G  WSPFSFF PGPSVA+G+GGGFD L LFL LGA    VR+F    
Sbjct: 124 GGYGYGSPFFGGYGYGWSPFSFFAPGPSVAVGVGGGFDTLVLFLVLGAVVGAVRRFLNRN 183

Query: 175 EDEED 179
            D+ D
Sbjct: 184 NDDYD 188

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:505006695	188	AT5G57345 "AT5G57345" [Arabido	0.977	0.936	0.494	2.1e-38

TAIR|locus:505006695 AT5G57345 "AT5G57345" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 90/182 (49%), Positives = 111/182 (60%)

Query:     2 SITASQQSFLTNALVTTH--RPRTKI-VTCVKVISC-TNRHDDQKYSSRKNDNQLAKLAV 57
             +I +S+QSFL+N     H  +P++ + +T    I C ++ HDD+  SSRKN+NQLAKLA+
Sbjct:     5 AIASSRQSFLSNNFSFQHSFKPKSNVNLTRPNSICCKSSHHDDETDSSRKNENQLAKLAI 64

Query:    58 VTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLV 117
              TLA GVL +GSVGDA AAKSGGR+GGQAFR SAPR  PR    SRTNIY+NP VAPPL+
Sbjct:    65 ATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPRPPPRINNRSRTNIYVNPQVAPPLI 124

Query:   118 XXXXXXXXXXXXXXXPFSFFVPGPSVAIXXXXXXXXXXXXXXXXXXXXVVRKFFGSREDE 177
                            PFSFF PGP+VA+                    V R FF SR DE
Sbjct:   125 GGYGYGYGGYGWS--PFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARNFFRSRNDE 182

Query:   178 ED 179
             +D
Sbjct:   183 DD 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       145   0.00071  103 3  11 22  0.46    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  118 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.66u 0.19s 14.85t   Elapsed:  00:00:00
  Total cpu time:  14.66u 0.19s 14.85t   Elapsed:  00:00:00
  Start:  Fri May 10 13:40:34 2013   End:  Fri May 10 13:40:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam07466	280	pfam07466, DUF1517, Protein of unknown function (D	5e-11
COG4371	334	COG4371, COG4371, Predicted membrane protein [Func	6e-08

>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517)

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 36/106 (33%), Positives = 45/106 (42%), Gaps = 23/106 (21%)

Query: 75  AAKSGGRVGGQAFR-PSAPRSAPRSYGNSRTNIYINPPVAPPLVGGYGYGSYYGGWGWSP 133
           AA SGGR+GG +FR PS   S+PRS                   GG  YGS  GG+G   
Sbjct: 1   AAASGGRIGGGSFRAPSRSSSSPRSSSPG---------------GGGYYGSPGGGFG--- 42

Query: 134 FSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFFGSREDEED 179
           F F +P      G GGG  L  L + +  A  +V  F  +      
Sbjct: 43  FPFLIPF----FGFGGGGGLFGLLILMAIAGVLVNAFRSAGGGGGG 84

This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown. Length = 280

>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown]

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 43/128 (33%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 52  LAKLAVVTLAAGVLTMGSVGDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPP 111
           LA    V  AA  +   SV  A AA+SGGR+GG +FR  AP    R Y            
Sbjct: 25  LALGGFVLAAALFVPPLSV--AAAARSGGRIGGGSFR--APSGYSRGYS----------G 70

Query: 112 VAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLGGGFDLLALFLFLGAAAAVVRKFF 171
             P   GGY  G Y GG G+  F F +PG     G GG F +L           ++R+  
Sbjct: 71  GGPS-GGGYSGGGYSGG-GFG-FPFIIPGGGGGGGFGGIFGILVFGAIANGVVGMMRRNL 127

Query: 172 GSREDEED 179
            S E    
Sbjct: 128 SSGEARGL 135

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
COG4371	334	Predicted membrane protein [Function unknown]	99.86
PF07466	289	DUF1517: Protein of unknown function (DUF1517); In	99.72
PF07466	289	DUF1517: Protein of unknown function (DUF1517); In	95.59
COG4371	334	Predicted membrane protein [Function unknown]	86.16
PLN00066	262	PsbP domain-containing protein 4; Provisional	81.76

>COG4371 Predicted membrane protein [Function unknown]

Probab=99.86  E-value=1.4e-21  Score=172.20  Aligned_cols=87  Identities=36%  Similarity=0.639  Sum_probs=67.6

Q ss_pred             chhHHhhhCCccCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCCCCcCCccccccCCceeec--cc
Q 039199           71 GDAVAAKSGGRVGGQAFRPSAPRSAPRSYGNSRTNIYINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIG--LG  148 (180)
Q Consensus        71 ~~A~AArSGGRIGGgSFRs~~prS~Prs~~~s~t~~y~~p~~app~~gGygyg~gYgG~G~spFpf~~Pgp~~g~G--~G  148 (180)
                      ..|+||||||||||||||+++  +-+|+        |+.   -.|.+|||+|| +|+|+|| +|||++|  .+|+|  +|
T Consensus        42 ~~a~aarSGGriGGgSfraps--~~sr~--------YS~---~gpsGGgY~gg-~Y~GGGf-gfPfiip--~~G~GGGfg  104 (334)
T COG4371          42 SVAAAARSGGRIGGGSFRAPS--GYSRG--------YSG---GGPSGGGYSGG-GYSGGGF-GFPFIIP--GGGGGGGFG  104 (334)
T ss_pred             HHHHHHhhCCCccCCCCCCCC--CCCCC--------cCC---CCCCCCCCCCC-CCCCCCc-CcCeEec--cCCcCCccc
Confidence            348899999999999999953  12255        421   24556777765 5888998 8999999  66664  45


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 039199          149 GGFDLLALFLFLGAAAAVVRKFFGSR  174 (180)
Q Consensus       149 G~f~llil~~v~g~vv~~vR~~~~~r  174 (180)
                      |+|+||+|++|+++||+.|||-+++-
T Consensus       105 GiFgilvf~aian~vv~~~Rr~~ssG  130 (334)
T COG4371         105 GIFGILVFGAIANGVVGMMRRNLSSG  130 (334)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            89999999999999999999966543

>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length

Probab=99.72  E-value=1.5e-17  Score=144.39  Aligned_cols=88  Identities=36%  Similarity=0.580  Sum_probs=61.1

Q ss_pred             HhhhCCccCCCCCCCCCCC-CCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCCCCCcCCccccccCCceeeccc--hhH
Q 039199           75 AAKSGGRVGGQAFRPSAPR-SAPRSYGNSRTNIYINPPVAPPLVGGYGYGSYYGGWGWSPFSFFVPGPSVAIGLG--GGF  151 (180)
Q Consensus        75 AArSGGRIGGgSFRs~~pr-S~Prs~~~s~t~~y~~p~~app~~gGygyg~gYgG~G~spFpf~~Pgp~~g~G~G--G~f  151 (180)
                      ||||||||||+|||+++++ |+||+++++....+ .+    +    ++|+++|+|+|+ ++||+.|  .||+|+|  |+|
T Consensus         1 aA~SGGR~GG~SFssps~ssSspssss~s~~~~~-~~----s----~~~~~~y~Ggg~-g~p~l~p--~~G~Ggg~~gl~   68 (289)
T PF07466_consen    1 AARSGGRMGGGSFSSPSRSSSSPSSSSPSSSGSS-SP----S----SGYGGGYSGGGF-GFPFLGP--FFGFGGGFGGLF   68 (289)
T ss_pred             CCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC-CC----C----CCCCCCCCCCCc-CcCcccc--ccccCcccchHH
Confidence            6789999999999976333 66777554333322 11    1    122223445555 5688877  6777664  889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC
Q 039199          152 DLLALFLFLGAAAAVVRKFFGSR  174 (180)
Q Consensus       152 ~llil~~v~g~vv~~vR~~~~~r  174 (180)
                      .+||+++|+++++..+|+..+..
T Consensus        69 ~iLIl~~Ia~~vv~~~r~~~~~~   91 (289)
T PF07466_consen   69 DILILFGIAFFVVRFFRRRRSGS   91 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999987654

The function of this family is unknown.

>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length

Probab=95.59  E-value=0.075  Score=46.94  Aligned_cols=10  Identities=20%  Similarity=0.275  Sum_probs=5.4

Q ss_pred             hhCCccCCCC
Q 039199           77 KSGGRVGGQA   86 (180)
Q Consensus        77 rSGGRIGGgS   86 (180)
                      |.||+-...+
T Consensus         7 R~GG~SFssp   16 (289)
T PF07466_consen    7 RMGGGSFSSP   16 (289)
T ss_pred             CcCCCCCCCC
Confidence            4566655543

The function of this family is unknown.

>COG4371 Predicted membrane protein [Function unknown]

Probab=86.16  E-value=7.6  Score=35.67  Aligned_cols=52  Identities=35%  Similarity=0.430  Sum_probs=34.8

Q ss_pred             CC-CCCCCCCCcCCccccccCCce-eeccch-hHHHHHHHHHHHHHHHHHHHHhcCC
Q 039199          121 GY-GSYYGGWGWSPFSFFVPGPSV-AIGLGG-GFDLLALFLFLGAAAAVVRKFFGSR  174 (180)
Q Consensus       121 gy-g~gYgG~G~spFpf~~Pgp~~-g~G~GG-~f~llil~~v~g~vv~~vR~~~~~r  174 (180)
                      || |++|+|+++++..|-.|  ++ .++++| +|.=++=++|++++++.|-+.++++
T Consensus        72 gpsGGgY~gg~Y~GGGfgfP--fiip~~G~GGGfgGiFgilvf~aian~vv~~~Rr~  126 (334)
T COG4371          72 GPSGGGYSGGGYSGGGFGFP--FIIPGGGGGGGFGGIFGILVFGAIANGVVGMMRRN  126 (334)
T ss_pred             CCCCCCCCCCCCCCCCcCcC--eEeccCCcCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence            45 45688888877787765  54 444445 3655555567888888888887764

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=81.76  E-value=4.4  Score=36.14  Aligned_cols=32  Identities=31%  Similarity=0.452  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHhhhCCCchhHHhhh---CCccCC
Q 039199           50 NQLAKLAVVTLAAGVLTMGSVGDAVAAKS---GGRVGG   84 (180)
Q Consensus        50 ~~l~kl~~~~ll~g~L~l~~~~~A~AArS---GGRIGG   84 (180)
                      ..|..++++ ...+  ++..|..++|++-   -|||=|
T Consensus        49 ~~~~s~~~~-~~~~--~~~~~~~~~a~~~g~~ag~~~~   83 (262)
T PLN00066         49 SALASGAAA-ASSA--VLAFPGEGLAVKQGLLAGRVPG   83 (262)
T ss_pred             HHHHHHHHH-Hhhh--hhcCCcchhhhhhcccccCCCC
Confidence            455544443 2233  3445777887743   367655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00