Citrus Sinensis ID: 039246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCING
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccEEEEEEcccccccHHHHHHHHHHccccccccEEEEEcccEEEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHcccHHHHHHccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcccEEEEEEcccccccHHHHHHHHHHHccccccEEEEEccccEEEEEEcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHcccccccccEEEccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccc
Coil and Loop (DISEMBL)
MISNPGLVFYACIAKgsiilgefsskepaiseTLAQEcidktprhhlmfshTVCKRTYAFlingpltyfvihdedlhkgesfwFLNRVKSAFEEIFETRsilnfdnvsnhcfqAHFDAVFCEIMgldlgfssssrsgskdgrsssvdssksrrtvlapllgepckglkkkkrsngeseamsrefsdvneekkvdvcddvtvqknalysgdhrQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCrgfrcing
Flexible Loop (DISEMBL)
MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFssssrsgskdgrsssvdssksrrtvlapllgepckglkkkkrsngeseamsrefsdvneekkvdvcDDVTVQKnalysgdhrqkaKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCING
Low Complexity Region (SEG)
MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFssssrsgskdgrsssvdssksrrTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCING
Disordered region (IsUnstruct)
*****GLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGF**************************************************************VDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCI**
Disordered Region (DISOPRED)
****PGL*FYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE******FDNVSNHCFQAHFDAVFCEIMGLDLG***************************************************************************************QIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCIN*
Disordered Region (DISEMBL)
MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFS*********************RTVLAPLLGEPCK************************EKKVDVCDDVTVQKNALYS********QIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCING
Disordered Region (DISPRO)
****PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSS********************************************************************************QKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCING
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q84WF5	255	Probable VAMP-like protei	no	no	0.944	0.937	0.266	2e-15
Q9M376	240	Vesicle-associated membra	no	no	0.881	0.929	0.227	2e-08
Q86AQ7	260	Vesicle-associated membra	yes	no	0.347	0.338	0.280	1e-05
O48850	285	Vesicle-associated membra	no	no	0.347	0.308	0.269	0.0005
P47192	221	Vesicle-associated membra	no	no	0.347	0.398	0.258	0.0007

>sp|Q84WF5|VAMPL_ARATH Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 24/263 (9%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSK-EPAISETLAQECIDKTPRHHLMFSHTVCKRTYA 59
           M S    V Y C+++ + I+  +++  +   +E+LA  C++KTP  H  +  T  K+T+ 
Sbjct: 1   MGSIQNTVHYCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFG 60

Query: 60  FLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRS------ILNFDNVSNHCFQ 113
           FL+     YF I D+   K     FL +++   +E  +  S       ++F NV +   +
Sbjct: 61  FLMKDDFVYFAIVDDVFKKSSVLDFLEKLRDELKEANKKNSRGSFSGSISFSNVQDQIVR 120

Query: 114 AHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRS 173
               ++  +   L L       S S DG   S  S+       APLLG   K  KKK R 
Sbjct: 121 RLIASLEFDHTCLPLS------SPSIDGAEQSYASNSK-----APLLGRSNKQDKKKGRD 169

Query: 174 NGES--EAMSREFSDVNEEKKVDVCDDVTVQKNALYSGDHR----QKAKQIWKKHVWIVL 227
           +  S       E    N+   V  C + + +         R    Q  ++ W++ V IVL
Sbjct: 170 HAHSLRGIEIEEHRKSNDRGNVTECSNASSESATYVPRRGRSGGSQSIERKWRRQVKIVL 229

Query: 228 GLDLFVCAVLFGIWLWVCRGFRC 250
            +D+ +C  L G+WL +C G  C
Sbjct: 230 AIDIAICLTLLGVWLAICHGIEC 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 41/264 (15%)

Query: 2   ISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFL 61
           +S  GL+ Y+ +AKG+++L E +      S T+A +C+ K P +   ++++    T+ FL
Sbjct: 1   MSQKGLI-YSFVAKGTVVLAEHTPYSGNFS-TIAVQCLQKLPTNSSKYTYSCDGHTFNFL 58

Query: 62  INGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFET------RSILNFDNVSNHCFQAH 115
           ++    + V+ DE   +   F FL RVK  F++ +E       R  L  ++  +  F   
Sbjct: 59  VDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDR 118

Query: 116 FDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRSNG 175
           F   +     LD  F    +   +   S   + SK                L K K    
Sbjct: 119 FSVAY----NLDREFGPILKEHMQYCMSHPEEMSK----------------LSKLKAQIT 158

Query: 176 ESEAMSREFSDVNEEKKVDVCDDVTV----QKNALYSGDHRQKAKQIWKKHVWI-VLGLD 230
           E + +  +    N EK +D  + + +     +N  +  D  Q+  +  ++ +W+  L + 
Sbjct: 159 EVKGIMMD----NIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMK 214

Query: 231 LFVCAVLFG----IWLWVCRGFRC 250
           L V   +F     +W+  C GF+C
Sbjct: 215 LMVAGAVFSFILIVWVVACGGFKC 238

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86AQ7|VAM7B_DICDI Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 8  VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
          + Y+ +A+GS +L EF+S       T+ +  +D  P +    S+   K  + +L++  LT
Sbjct: 3  IIYSLVARGSSVLAEFTSTNGNFV-TITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLT 61

Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
          Y  + DE+  +   F FL+ VK+ F+ ++
Sbjct: 62 YLCMADEEFGRRIPFTFLDDVKNRFKSMY 90

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion.

Dictyostelium discoideum (taxid: 44689)

>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 8   VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
           + Y+ +A+G++IL E++  +   +   AQ C+ K P  +  F++     T+ +L+    T
Sbjct: 71  LIYSFVARGTVILVEYTEFKGNFTAVAAQ-CLQKLPSSNNKFTYNCDGHTFNYLVENGFT 129

Query: 68  YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
           Y V+  E + +     FL RVK  F + +
Sbjct: 130 YCVVAVESVGRQIPMAFLERVKEDFNKRY 158

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 8  VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
          + Y+ +A+G++IL EF+  +   + ++A +C+ K P  +  F++     T+ +L+    T
Sbjct: 6  LIYSFVARGTVILVEFTDFKGNFT-SIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFT 64

Query: 68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
          Y V+  +   +     FL RVK  F + +
Sbjct: 65 YCVVAVDSAGRQIPMAFLERVKEDFNKRY 93

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
224135147	262	predicted protein [Populus trichocarpa]	1.0	0.965	0.488	2e-64
255551229	280	conserved hypothetical protein [Ricinus	0.996	0.9	0.469	9e-63
297799190	263	hypothetical protein ARALYDRAFT_491998 [	0.976	0.939	0.479	1e-60
15234299	260	SNARE-like family protein [Arabidopsis t	0.976	0.95	0.481	7e-58
449461895	255	PREDICTED: probable VAMP-like protein At	0.960	0.952	0.463	2e-57
225455362	273	PREDICTED: vesicle-associated membrane p	0.984	0.912	0.498	4e-56
15237326	272	vesicle-associated membrane protein-like	1.0	0.930	0.485	1e-54
297792653	271	hypothetical protein ARALYDRAFT_495365 [	1.0	0.933	0.487	2e-54
28416629	272	At5g52990 [Arabidopsis thaliana] gi|1107	1.0	0.930	0.481	7e-54
297822379	262	hypothetical protein ARALYDRAFT_481613 [	0.976	0.942	0.477	3e-53

>gi|224135147|ref|XP_002321995.1| predicted protein [Populus trichocarpa] gi|222868991|gb|EEF06122.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/262 (48%), Positives = 166/262 (63%), Gaps = 9/262 (3%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           MISNP  VFYACIAKG  +L EFSS + +  E + Q CI++TP +H MFSHT   +TY F
Sbjct: 1   MISNPNHVFYACIAKGPTVLAEFSSSKESGIEIIGQRCIEETPPNHSMFSHTTRNKTYTF 60

Query: 61  LINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVF 120
           LI+ P  YF I DE+L K ES WFLNRVK AFEE    + + + + + + CFQ     VF
Sbjct: 61  LIDDPFAYFAIFDENLQKSESLWFLNRVKDAFEEFLGAKMMKDGEKMGSFCFQGELRFVF 120

Query: 121 CEIMGLDLGFSSS-SRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGL-KKKKRSNGESE 178
            +I+ LD    ++     +KD R+ S+DS+K++  V+ PLL +P K L KKKKRS GE+ 
Sbjct: 121 RQILALDADLVNALMEESTKDSRNPSLDSTKAKGAVIRPLLPKPSKVLMKKKKRSPGEAN 180

Query: 179 A-------MSREFSDVNEEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVWIVLGLDL 231
                    + + S V E    D    +  +    Y GD +QKAKQIWKKHVW+VL LDL
Sbjct: 181 GDHHGGDLDNNKASGVGENGSRDFSVTMMQKSGGFYMGDGKQKAKQIWKKHVWVVLILDL 240

Query: 232 FVCAVLFGIWLWVCRGFRCING 253
            VCAVLFG+WLWVCRG +CI+G
Sbjct: 241 IVCAVLFGVWLWVCRGLKCIDG 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551229|ref|XP_002516661.1| conserved hypothetical protein [Ricinus communis] gi|223544156|gb|EEF45680.1| conserved hypothetical protein [Ricinus communis]

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 132/281 (46%), Positives = 173/281 (61%), Gaps = 29/281 (10%)

Query: 1   MISNPGLVFYACIAKGSIILGEF-SSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYA 59
           MISNP L+FYACI+KG   L EF SSKEP I E +A+ CI++TP  H  FSHTV ++TY 
Sbjct: 1   MISNPDLIFYACISKGPTTLAEFTSSKEPGI-EDIAKRCIERTPPLHSTFSHTVRRKTYT 59

Query: 60  FLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAV 119
           FLIN P+ YFVI  E L K E FWFLNRVK AFEE      + +FD ++ +CFQ  F  +
Sbjct: 60  FLINDPVAYFVISHESLEKSECFWFLNRVKIAFEEFSGANPVKDFDELTYNCFQEQFCPI 119

Query: 120 FCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGL--KKKKRSNGES 177
           F  I+ L++    S     KD R+ S+DS++ +R+V+ PLL +P K +  KKK+++ G +
Sbjct: 120 FRNILSLNVELVDSLMEVPKDIRNPSLDSTRGKRSVVRPLLSKPAKLMMKKKKRQALGCA 179

Query: 178 EAMSREFSDVNEEKKVD---------------VCDDVTVQKN----------ALYSGDHR 212
             +S       E   VD               V ++V V +             Y GD R
Sbjct: 180 GCVSDGGGGGGEANVVDNNNNNNNNNNYKVNHVGENVVVNREFSVSMHKNGGGFYMGDGR 239

Query: 213 QKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCING 253
           QKAKQIW+KHVW+VL LDL +CAVLFGIWLW+CRGF+CI+G
Sbjct: 240 QKAKQIWRKHVWVVLILDLVICAVLFGIWLWICRGFKCIDG 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799190|ref|XP_002867479.1| hypothetical protein ARALYDRAFT_491998 [Arabidopsis lyrata subsp. lyrata] gi|297313315|gb|EFH43738.1| hypothetical protein ARALYDRAFT_491998 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/269 (47%), Positives = 170/269 (63%), Gaps = 22/269 (8%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           MISNP L+FY+CIAKG++IL EF+SKE    E LA  CI+  P HH M SHTV KRTYA 
Sbjct: 1   MISNPRLLFYSCIAKGTVILAEFASKEEPGIEDLALRCIENIPPHHSMISHTVHKRTYAL 60

Query: 61  LINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILN-FDNVSNHCFQAHFDAV 119
           +I+G  +YF I DE + K ES W  NR+KSA E + E  S  +  DN + HC Q+  D +
Sbjct: 61  IIDGLFSYFAILDEVVAKSESIWLFNRLKSATESLMEDGSTADSLDNPTQHCLQSKLDPI 120

Query: 120 FCEI------------MGLDLGFSSSSRSGSKDGRSS-SVDSSKSRR-TVLAPLLGEPCK 165
           F EI            + L+LG + S RS +++ +++ S+DSS+ R+   L PLLG+P +
Sbjct: 121 FAEIANGGGNTNNNKDLELELGMAGSPRSITREIKNNQSLDSSRGRKGGALMPLLGKPLR 180

Query: 166 GLKKKKRSNGESEAMSREFSDVN-EEKKVDVCDDVTVQKNALYSGDHRQKAKQIWKKHVW 224
            LK KKR   E +      S+ N  EKK+D+     V+   +    HRQKAKQIW+KHVW
Sbjct: 181 VLKNKKRLQTEGK------SEGNWNEKKMDLGGGKGVRNGLMIHDHHRQKAKQIWRKHVW 234

Query: 225 IVLGLDLFVCAVLFGIWLWVCRGFRCING 253
           IVL  DL +C VLFGIWLWVC+GF+C+ G
Sbjct: 235 IVLMFDLCICVVLFGIWLWVCQGFQCMEG 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234299|ref|NP_194513.1| SNARE-like family protein [Arabidopsis thaliana] gi|4972115|emb|CAB43972.1| putative protein [Arabidopsis thaliana] gi|7269637|emb|CAB81433.1| putative protein [Arabidopsis thaliana] gi|17978989|gb|AAL47455.1| AT4g27840/T27E11_80 [Arabidopsis thaliana] gi|22655346|gb|AAM98265.1| At4g27840/T27E11_80 [Arabidopsis thaliana] gi|332659999|gb|AEE85399.1| SNARE-like family protein [Arabidopsis thaliana]

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 128/266 (48%), Positives = 167/266 (62%), Gaps = 19/266 (7%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           M SN  ++FY+CIAKG++IL EF+SKE    E LA  CI+  P HH M SHTV KRTYA 
Sbjct: 1   MTSNQRMLFYSCIAKGTVILAEFASKEEPGIEDLALRCIENVPPHHSMISHTVHKRTYAL 60

Query: 61  LINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILN-FDNVSNHCFQAHFDAV 119
           +I+G  +YF I DE + K ES W  NR+KSA E + E  S  +  DN + HC Q+  D V
Sbjct: 61  IIDGLFSYFAILDEVVAKSESVWLFNRLKSATESLMEDGSTADSLDNPTQHCLQSKLDPV 120

Query: 120 FCEIMG--------LDLGFSSSSRSGSKDGRSS--SVDSSKSRR-TVLAPLLGEPCKGLK 168
           F EI          L+L F  S RS +++ +S+  S+DSSK R+   L PLLG+P + LK
Sbjct: 121 FAEIAAIGGNHNKDLELEF-GSPRSIAREIKSNNQSLDSSKGRKGGALMPLLGKPLRVLK 179

Query: 169 KKKRSNGESEAMSREFSDVNEEKKVDVCDDVTVQKNAL-YSGDHRQKAKQIWKKHVWIVL 227
            KKR   E+++          EKK+D+       +N L +   HRQKAKQIW+KHVWIVL
Sbjct: 180 NKKRLQTEAKSEGHW-----NEKKMDLGGGGKGVRNGLIHDHHHRQKAKQIWRKHVWIVL 234

Query: 228 GLDLFVCAVLFGIWLWVCRGFRCING 253
             DL +C VLFGIWLW+C+GF+CI+G
Sbjct: 235 MFDLCICLVLFGIWLWICQGFQCIDG 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461895|ref|XP_004148677.1| PREDICTED: probable VAMP-like protein At1g33475-like [Cucumis sativus] gi|449517529|ref|XP_004165798.1| PREDICTED: probable VAMP-like protein At1g33475-like [Cucumis sativus]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/261 (46%), Positives = 168/261 (64%), Gaps = 18/261 (6%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           M+SNP LV Y+CIA+G+IIL EF+ +EP + + L   CI+KTP HH +FSHT+  R Y F
Sbjct: 1   MVSNPDLVLYSCIARGTIILAEFT-REPNLDD-LPFRCIEKTPPHHSIFSHTIRNRAYTF 58

Query: 61  LINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVF 120
           LI G   YF I  EDL+K E   FLNR+K  FE   E+ S+  F+N ++HCFQ+HFD+ F
Sbjct: 59  LIEGSFVYFGIFHEDLNKSEVSGFLNRLKRDFEVFLESESLKGFENFTSHCFQSHFDSSF 118

Query: 121 CEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRSNGESEAM 180
             ++GL+L  +SS  +G K  + SS+DSS  ++  L      P   +KKKK+  G+    
Sbjct: 119 RHLLGLNLNKTSS--NGLKGSQRSSLDSSLRKQIPLVSKFSNPGSLMKKKKKVTGDGNWD 176

Query: 181 SREFSDVNEEKKVDVCDD----------VTVQKNALYSGDHRQKAKQIWKKHVWIVLGLD 230
             ++     +  VD+ DD          + +QK+  ++ + RQKAKQ+W+KHVW+VL +D
Sbjct: 177 GGKYG---MDDSVDLYDDNNGLCSRDITLLMQKHGSHNSE-RQKAKQVWRKHVWVVLSID 232

Query: 231 LFVCAVLFGIWLWVCRGFRCI 251
           LFVC VLFGIWLWVCRGF+CI
Sbjct: 233 LFVCLVLFGIWLWVCRGFQCI 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455362|ref|XP_002277435.1| PREDICTED: vesicle-associated membrane protein 727 [Vitis vinifera]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 138/277 (49%), Positives = 185/277 (66%), Gaps = 28/277 (10%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           MIS+P LVFYACI+KG+ IL EF+S +P + +TLA +C++K P  H MFSHTV +RTY F
Sbjct: 1   MISDPKLVFYACISKGTTILAEFNSVDPDL-QTLALKCLEKAPALHSMFSHTVRQRTYTF 59

Query: 61  LIN--GPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDA 118
           L++   P  YF I DE + + E+ WFLNRVK AF+ +     I NFD++S+HCFQ  F+ 
Sbjct: 60  LLDEPDPYVYFGIFDEKMERYETLWFLNRVKEAFKGMIRNDPIKNFDDLSSHCFQGEFNP 119

Query: 119 VFCEIM---------GLDLGFSSSSRSGSKDGRSSSVD-SSKSRRTVLAPLLGEPCKGLK 168
           VF +++          LDL  SS  ++  KD R+ S+D S++ +R V  PLLG+P KGLK
Sbjct: 120 VFRQLLSHPVEPEQLNLDLN-SSLPQNVLKDKRNLSLDCSTRGKRIVSLPLLGKPGKGLK 178

Query: 169 KKKRSNGESEAMSREFSDVNEEKKVDVCDD---------VTVQKNALYSGDH---RQKAK 216
           KKKR +GE    +R+   + E K VDV DD          ++QKN  Y GD    RQKAK
Sbjct: 179 KKKRLSGEVNGDTRDH--LMENKVVDVSDDGGSQTRDFPASMQKNGGYLGDMAAGRQKAK 236

Query: 217 QIWKKHVWIVLGLDLFVCAVLFGIWLWVCRGFRCING 253
           Q+WK+ VW+VL LDL VC+VLFG+WLW+CRGFRC++G
Sbjct: 237 QVWKQQVWMVLILDLCVCSVLFGVWLWICRGFRCVDG 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237326|ref|NP_200111.1| vesicle-associated membrane protein-like protein [Arabidopsis thaliana] gi|8809588|dbj|BAA97139.1| unnamed protein product [Arabidopsis thaliana] gi|332008904|gb|AED96287.1| vesicle-associated membrane protein-like protein [Arabidopsis thaliana]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/272 (48%), Positives = 170/272 (62%), Gaps = 19/272 (6%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           MISNP L+ Y CIAKG+++L EF S++    E +A  CI+ TP HH MFSHTV K+TY F
Sbjct: 1   MISNPSLLSYTCIAKGTVVLAEFVSRQEPGIEAIALRCIENTPPHHSMFSHTVHKKTYTF 60

Query: 61  LING-PLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFET--RSILNFDNVSNHCFQAHFD 117
            I+     YF I DE + K ESFW LNR++SA E++ +     +    N  +HC Q   D
Sbjct: 61  AIDDDSFVYFSISDESMEKPESFWVLNRLRSAIEDLIKDGGSDVETLINPVSHCLQLKLD 120

Query: 118 AVFCEIMG------LDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKK 171
            VF EI+G      LD+    S RS +++ R+ S+DSSK RR  L PLLG+P K LKKKK
Sbjct: 121 PVFAEIVGVVDLELLDMDLVGSPRSVARESRNPSIDSSKGRRAALMPLLGKPLKALKKKK 180

Query: 172 RSNGESEAM-SREFSDVNE--EKKVDVCDDVT--VQKNALYSG-----DHRQKAKQIWKK 221
           R + E++   S E   + E  EK VD+C +    V +  L +G      HRQKAKQIWKK
Sbjct: 181 RLHNEAKGGDSCEVGSIQEISEKNVDLCGNGNNGVLRKELRNGLLSDHHHRQKAKQIWKK 240

Query: 222 HVWIVLGLDLFVCAVLFGIWLWVCRGFRCING 253
           HVW+VL  D  +CAVLFGIWLW+C GF+CI G
Sbjct: 241 HVWVVLMFDFCICAVLFGIWLWICEGFQCIQG 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792653|ref|XP_002864211.1| hypothetical protein ARALYDRAFT_495365 [Arabidopsis lyrata subsp. lyrata] gi|297310046|gb|EFH40470.1| hypothetical protein ARALYDRAFT_495365 [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/271 (48%), Positives = 168/271 (61%), Gaps = 18/271 (6%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           MISNP L+ Y CIAKG+++L EF SKE    E +A  CI+ TP HH MFSHTV K+ Y F
Sbjct: 1   MISNPSLLSYTCIAKGTVVLAEFVSKEEPGIEAVALRCIENTPPHHSMFSHTVHKKRYTF 60

Query: 61  LING-PLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFET--RSILNFDNVSNHCFQAHFD 117
            I+     YF I DE + K ESFW LNR++SA E++       +    N  +HC Q   D
Sbjct: 61  AIDDDSFVYFAILDESMEKPESFWVLNRLRSAIEDLIRDGGSDVETLINPVSHCLQLKID 120

Query: 118 AVFCEIMG-----LDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKR 172
            +F EI+G     LD+    S RS +++ R+ S+DSSK RR  L PLLG+P K LKKKKR
Sbjct: 121 PIFAEIVGVVDLELDMDLVGSPRSVARESRNPSIDSSKGRRAALMPLLGKPLKALKKKKR 180

Query: 173 SNGESEAM-SREFSDVNE--EKKVDVCDDVT--VQKNALYSG-----DHRQKAKQIWKKH 222
            + E++   S E   + E  EK VD+C +    V +  L +G      HRQKAKQIWKKH
Sbjct: 181 LHNEAKGEDSCEVGSIQEISEKNVDLCGNGNNGVLRKELRNGLLSDHHHRQKAKQIWKKH 240

Query: 223 VWIVLGLDLFVCAVLFGIWLWVCRGFRCING 253
           VW+VL  D  +CAVLFGIWLW+C GF+CI G
Sbjct: 241 VWVVLMFDFCICAVLFGIWLWICEGFQCIQG 271

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28416629|gb|AAO42845.1| At5g52990 [Arabidopsis thaliana] gi|110735922|dbj|BAE99936.1| hypothetical protein [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 131/272 (48%), Positives = 169/272 (62%), Gaps = 19/272 (6%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           MISNP L+ Y CIAKG+++L EF S++    E +A  CI+ TP HH MFSHTV K+TY F
Sbjct: 1   MISNPSLLSYTCIAKGTVVLAEFVSRQEPGIEAIALRCIENTPPHHSMFSHTVHKKTYTF 60

Query: 61  LING-PLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFET--RSILNFDNVSNHCFQAHFD 117
            I+     YF I  E + K ESFW LNR++SA E++ +     +    N  +HC Q   D
Sbjct: 61  AIDDDSFVYFSISGESMEKPESFWVLNRLRSAIEDLIKDGGSDVETLINPVSHCLQLKLD 120

Query: 118 AVFCEIMG------LDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKK 171
            VF EI+G      LD+    S RS +++ R+ S+DSSK RR  L PLLG+P K LKKKK
Sbjct: 121 PVFAEIVGVVDLELLDMDLVGSPRSVARESRNPSIDSSKGRRAALMPLLGKPLKALKKKK 180

Query: 172 RSNGESEAM-SREFSDVNE--EKKVDVCDDVT--VQKNALYSG-----DHRQKAKQIWKK 221
           R + E++   S E   + E  EK VD+C +    V +  L +G      HRQKAKQIWKK
Sbjct: 181 RLHNEAKGGDSCEVGSIQEISEKNVDLCGNGNNGVLRKELRNGLLSDHHHRQKAKQIWKK 240

Query: 222 HVWIVLGLDLFVCAVLFGIWLWVCRGFRCING 253
           HVW+VL  D  +CAVLFGIWLW+C GF+CI G
Sbjct: 241 HVWVVLMFDFCICAVLFGIWLWICEGFQCIQG 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822379|ref|XP_002879072.1| hypothetical protein ARALYDRAFT_481613 [Arabidopsis lyrata subsp. lyrata] gi|297324911|gb|EFH55331.1| hypothetical protein ARALYDRAFT_481613 [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 163/268 (60%), Gaps = 21/268 (7%)

Query: 1   MISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAF 60
           MISNP L+ Y CIAKG+++L EF SKE    E +A  CI+ TP HH MFSHTV K+TY F
Sbjct: 1   MISNPSLLSYTCIAKGTVVLAEFVSKEEPGIEAVALRCIENTPPHHSMFSHTVHKKTYTF 60

Query: 61  LING-PLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFET--RSILNFDNVSNHCFQAHFD 117
            I+     YF I DE + K ESFW LNR++SA E++       +    N  +HC Q+  D
Sbjct: 61  AIDDDSFVYFAILDESMEKPESFWVLNRLRSAIEDLIRDGGSDVETLINPVSHCLQSKLD 120

Query: 118 AVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPCKGLKKKKRSNGES 177
            VF EI+G+            ++ R+ S+DSSK RR  L PLLG+P K LKKKK+    +
Sbjct: 121 PVFAEIVGV------VDERSERESRNPSIDSSKGRRAALMPLLGKPLKALKKKKKKRLHN 174

Query: 178 EAMSREFSDVNE-----EKKVDVCDDVT--VQKNALYSG-----DHRQKAKQIWKKHVWI 225
           EA  ++  +V       EK VDVC +    V +  L +G      HRQKAKQIWKKHVW+
Sbjct: 175 EAKGQDSCEVGSIKEISEKNVDVCGNGNNGVLRKELRNGLLSDHHHRQKAKQIWKKHVWV 234

Query: 226 VLGLDLFVCAVLFGIWLWVCRGFRCING 253
           VL  D  +CAVLFGIWLW+C GF+CI G
Sbjct: 235 VLMFDFCICAVLFGIWLWICEGFQCIQG 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2137365	260	AT4G27840 "AT4G27840" [Arabido	0.976	0.95	0.458	9.2e-52
TAIR|locus:2168382	272	AT5G52990 "AT5G52990" [Arabido	0.770	0.716	0.421	8.3e-35
TAIR|locus:504956331	255	AT1G33475 [Arabidopsis thalian	0.932	0.925	0.257	5.3e-17
TAIR|locus:2124705	254	AT4G10170 "AT4G10170" [Arabido	0.339	0.338	0.310	3.1e-16
TAIR|locus:2080340	240	VAMP727 "AT3G54300" [Arabidops	0.391	0.412	0.313	8.4e-12
DICTYBASE|DDB_G0277173	260	vamp7B "vesicle-associated mem	0.347	0.338	0.280	1.7e-08
TAIR|locus:2010642	219	VAMP721 "AT1G04750" [Arabidops	0.339	0.392	0.264	5.4e-06
TAIR|locus:2010627	220	VAMP726 "AT1G04760" [Arabidops	0.339	0.390	0.275	7e-06
TAIR|locus:2046367	285	VAMP725 "AT2G32670" [Arabidops	0.339	0.301	0.275	0.0001
TAIR|locus:2046490	217	VAMP723 "AT2G33110" [Arabidops	0.332	0.387	0.282	0.00047

TAIR|locus:2137365 AT4G27840 "AT4G27840" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 122/266 (45%), Positives = 155/266 (58%)

Query:     1 MISNPGLVFYACIAKGSIILGEFSSKE-PAISETLAQECIDKTPRHHLMFSHTVCKRTYA 59
             M SN  ++FY+CIAKG++IL EF+SKE P I E LA  CI+  P HH M SHTV KRTYA
Sbjct:     1 MTSNQRMLFYSCIAKGTVILAEFASKEEPGI-EDLALRCIENVPPHHSMISHTVHKRTYA 59

Query:    60 FLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILN-FDNVSNHCFQAHFDA 118
              +I+G  +YF I DE + K ES W  NR+KSA E + E  S  +  DN + HC Q+  D 
Sbjct:    60 LIIDGLFSYFAILDEVVAKSESVWLFNRLKSATESLMEDGSTADSLDNPTQHCLQSKLDP 119

Query:   119 VFCEI--MG--------LDLGFXXXXXXXXXXXXXXXXXXXXXXXTVLAPLLGEPCKGLK 168
             VF EI  +G        L+ G                          L PLLG+P + LK
Sbjct:   120 VFAEIAAIGGNHNKDLELEFGSPRSIAREIKSNNQSLDSSKGRKGGALMPLLGKPLRVLK 179

Query:   169 KKKRSNGESEAMSREFSDVNEEKKVDVCDDVTVQKNAL-YSGDHRQKAKQIWKKHVWIVL 227
              KKR   ++EA S    +   EKK+D+       +N L +   HRQKAKQIW+KHVWIVL
Sbjct:   180 NKKRL--QTEAKSEGHWN---EKKMDLGGGGKGVRNGLIHDHHHRQKAKQIWRKHVWIVL 234

Query:   228 GLDLFVCAVLFGIWLWVCRGFRCING 253
               DL +C VLFGIWLW+C+GF+CI+G
Sbjct:   235 MFDLCICLVLFGIWLWICQGFQCIDG 260

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

TAIR|locus:2168382 AT5G52990 "AT5G52990" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 88/209 (42%), Positives = 113/209 (54%)

Query:     1 MISNPGLVFYACIAKGSIILGEFSSK-EPAISETLAQECIDKTPRHHLMFSHTVCKRTYA 59
             MISNP L+ Y CIAKG+++L EF S+ EP I E +A  CI+ TP HH MFSHTV K+TY 
Sbjct:     1 MISNPSLLSYTCIAKGTVVLAEFVSRQEPGI-EAIALRCIENTPPHHSMFSHTVHKKTYT 59

Query:    60 FLINGP-LTYFVIHDEDLHKGESFWFLNRVKSAFEEIFET--RSILNFDNVSNHCFQAHF 116
             F I+     YF I DE + K ESFW LNR++SA E++ +     +    N  +HC Q   
Sbjct:    60 FAIDDDSFVYFSISDESMEKPESFWVLNRLRSAIEDLIKDGGSDVETLINPVSHCLQLKL 119

Query:   117 DAVFCEIMG------LDLGFXXXXXXXXXXXXXXXXXXXXXXXTVLAPLLGEPCKGLKKK 170
             D VF EI+G      LD+                           L PLLG+P K LKKK
Sbjct:   120 DPVFAEIVGVVDLELLDMDLVGSPRSVARESRNPSIDSSKGRRAALMPLLGKPLKALKKK 179

Query:   171 KRSNGESEAM-SREFSDVNE--EKKVDVC 196
             KR + E++   S E   + E  EK VD+C
Sbjct:   180 KRLHNEAKGGDSCEVGSIQEISEKNVDLC 208

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

TAIR|locus:504956331 AT1G33475 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 65/252 (25%), Positives = 109/252 (43%)

Query:     8 VFYACIAKGSIILGEFSSK-EPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPL 66
             V Y C+++ + I+  +++  +   +E+LA  C++KTP  H  +  T  K+T+ FL+    
Sbjct:     8 VHYCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFGFLMKDDF 67

Query:    67 TYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGL 126
              YF I D+   K     FL +++   +E  +  S  +F    +  F    D +   ++  
Sbjct:    68 VYFAIVDDVFKKSSVLDFLEKLRDELKEANKKNSRGSFSGSIS--FSNVQDQIVRRLIA- 124

Query:   127 DLGFXXXXXXXXXXXXXXXXXXXXXXXTVLAPLLGEPCKGLKKKKRSNGES-EAMS-REF 184
              L F                          APLLG   K  KKK R +  S   +   E 
Sbjct:   125 SLEFDHTCLPLSSPSIDGAEQSYASNSK--APLLGRSNKQDKKKGRDHAHSLRGIEIEEH 182

Query:   185 SDVNEEKKVDVCDDVTVQKNALY------SGDHRQKAKQIWKKHVWIVLGLDLFVCAVLF 238
                N+   V  C + +  ++A Y      SG   Q  ++ W++ V IVL +D+ +C  L 
Sbjct:   183 RKSNDRGNVTECSNAS-SESATYVPRRGRSGGS-QSIERKWRRQVKIVLAIDIAICLTLL 240

Query:   239 GIWLWVCRGFRC 250
             G+WL +C G  C
Sbjct:   241 GVWLAICHGIEC 252

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

TAIR|locus:2124705 AT4G10170 "AT4G10170" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query:     8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
             V Y C+++ + IL  ++  +   +E+LA  C++K+P  H  +  T+ KR + FLI     
Sbjct:     8 VHYCCVSRDNQILYSYNGGDQT-NESLAALCLEKSPPFHTWYFETIGKRRFGFLIGDGFV 66

Query:    68 YFVIHDEDLHKGESFWFLNRVKSAFEE 94
             YF I DE L +     FL  ++  F++
Sbjct:    67 YFAIVDEVLKRSSVLKFLEHLRDEFKK 93

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2080340 VAMP727 "AT3G54300" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
 Identities = 32/102 (31%), Positives = 57/102 (55%)

Query:     2 ISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFL 61
             +S  GL+ Y+ +AKG+++L E +      S T+A +C+ K P +   ++++    T+ FL
Sbjct:     1 MSQKGLI-YSFVAKGTVVLAEHTPYSGNFS-TIAVQCLQKLPTNSSKYTYSCDGHTFNFL 58

Query:    62 INGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILN 103
             ++    + V+ DE   +   F FL RVK  F++ +E  SI N
Sbjct:    59 VDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEA-SIKN 99

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0007033 "vacuole organization" evidence=RCA;IMP

GO:0031201 "SNARE complex" evidence=IPI

DICTYBASE|DDB_G0277173 vamp7B "vesicle-associated membrane protein 7B" [Dictyostelium discoideum (taxid:44689)]

 Score = 116 (45.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
 Identities = 25/89 (28%), Positives = 48/89 (53%)

Query:     8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
             + Y+ +A+GS +L EF+S       T+ +  +D  P +    S+   K  + +L++  LT
Sbjct:     3 IIYSLVARGSSVLAEFTSTNGNFV-TITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLT 61

Query:    68 YFVIHDEDLHKGESFWFLNRVKSAFEEIF 96
             Y  + DE+  +   F FL+ VK+ F+ ++
Sbjct:    62 YLCMADEEFGRRIPFTFLDDVKNRFKSMY 90

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0006906 "vesicle fusion" evidence=ISS

GO:0005765 "lysosomal membrane" evidence=IEA;ISS

GO:0031902 "late endosome membrane" evidence=IEA;ISS

GO:0031201 "SNARE complex" evidence=ISS

GO:0008333 "endosome to lysosome transport" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2010642 VAMP721 "AT1G04750" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 23/87 (26%), Positives = 46/87 (52%)

Query:     8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
             + Y+ +A+G++IL EF+  +   + ++A +C+ K P  +  F++     T+ +L+    T
Sbjct:     6 LIYSFVARGTVILVEFTDFKGNFT-SIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFT 64

Query:    68 YFVIHDEDLHKGESFWFLNRVKSAFEE 94
             Y V+  +   +     FL RVK  F +
Sbjct:    65 YCVVAVDSAGRQIPMSFLERVKEDFNK 91

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IGI

GO:0072661 "protein targeting to plasma membrane" evidence=IGI

TAIR|locus:2010627 VAMP726 "AT1G04760" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
 Identities = 24/87 (27%), Positives = 44/87 (50%)

Query:     8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
             + Y+ +A+G++IL E++  +   +   AQ C+ K P  +  F++     T+ +L +   T
Sbjct:     6 LIYSFVARGTVILAEYTEFKGNFTSVAAQ-CLQKLPSSNNKFTYNCDGHTFNYLADNGFT 64

Query:    68 YFVIHDEDLHKGESFWFLNRVKSAFEE 94
             Y V+  E   +     FL RVK  F +
Sbjct:    65 YCVVVIESAGRQIPMAFLERVKEDFNK 91

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2046367 VAMP725 "AT2G32670" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 24/87 (27%), Positives = 45/87 (51%)

Query:     8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
             + Y+ +A+G++IL E++  +   +   AQ C+ K P  +  F++     T+ +L+    T
Sbjct:    71 LIYSFVARGTVILVEYTEFKGNFTAVAAQ-CLQKLPSSNNKFTYNCDGHTFNYLVENGFT 129

Query:    68 YFVIHDEDLHKGESFWFLNRVKSAFEE 94
             Y V+  E + +     FL RVK  F +
Sbjct:   130 YCVVAVESVGRQIPMAFLERVKEDFNK 156

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

TAIR|locus:2046490 VAMP723 "AT2G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
 Identities = 24/85 (28%), Positives = 42/85 (49%)

Query:     8 VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
             +FY+ IA+G++IL EF+  +   +   AQ  ++  P  +  F++     T+  L+    T
Sbjct:     6 LFYSFIARGTVILVEFTDFKGNFTSVAAQY-LENLPSSNNKFTYNCDGHTFNDLVENGFT 64

Query:    68 YFVIHDEDLHKGESFWFLNRVKSAF 92
             Y V+  +   +     FL RVK  F
Sbjct:    65 YCVVAVDSAGREIPMAFLERVKEDF 89

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	100.0
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	99.93
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	99.83
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	99.65
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	99.64
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	99.53
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	99.34
PF04086	279	SRP-alpha_N: Signal recognition particle, alpha su	94.9
KOG0781	587	consensus Signal recognition particle receptor, al	90.85
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	85.52
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	83.76

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-60  Score=390.90  Aligned_cols=197  Identities=21%  Similarity=0.372  Sum_probs=186.3

Q ss_pred             ceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246            6 GLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRH-HLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF   84 (253)
Q Consensus         6 m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~-~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F   84 (253)
                      |+|+|++||||++|||||++.+||| .+++.++|+|||++ ++|.||..|+|+|||+.+||++|+||||+++++++||+|
T Consensus         1 m~iiYs~VARGTvvLaeft~~~gNf-~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaF   79 (217)
T KOG0859|consen    1 MSIIYSFVARGTVILAEFTEFSGNF-SSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAF   79 (217)
T ss_pred             CceeEEEEecceEEEEeeeeccCCH-HHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHH
Confidence            7899999999999999999999999 99999999999976 779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCc
Q 039246           85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPC  164 (253)
Q Consensus        85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  164 (253)
                      |++|+++|.+.|+.    .++++.+|+||++|+++|++.|++   |+++|..                           |
T Consensus        80 Le~Ik~~F~k~YG~----~a~ta~AysmN~EFs~vL~qqm~y---~s~~p~i---------------------------d  125 (217)
T KOG0859|consen   80 LERIKEDFKKRYGG----GAHTAVAYSMNKEFSSVLKQQMQY---CSEHPEI---------------------------S  125 (217)
T ss_pred             HHHHHHHHHHHhcc----chhHHHHhHhHHHHHHHHHHHHHH---HHcCcch---------------------------h
Confidence            99999999999984    377899999999999999999998   5556654                           8


Q ss_pred             hhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhhH
Q 039246          165 KGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVWI  225 (253)
Q Consensus       165 k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K~  225 (253)
                      |+.++|              .||+|||+||++|                 |++|+.++  |+ +++|+++|+|||+|+|+
T Consensus       126 ~lskvk--------------aqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr-~q~r~~~r~mw~~n~kl  190 (217)
T KOG0859|consen  126 KLAKVK--------------AQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFR-TQGRKLRRKMWFQNMKL  190 (217)
T ss_pred             HHHHHH--------------HHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHH-HHHHHHHHHHHHhccce
Confidence            999976              9999999999999                 99999998  99 59999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccc
Q 039246          226 VLGLDLFVCAVLFGIWLWVCRGFRCIN  252 (253)
Q Consensus       226 ~i~i~~vv~~vi~~i~~~~C~Gf~C~~  252 (253)
                      .+++.++++++||+||+.+||||.|-+
T Consensus       191 ~~iv~~~~~~~iyiiv~~~CgG~~~~s  217 (217)
T KOG0859|consen  191 KLIVLGVSISLIYIIVARRCGGFTCPS  217 (217)
T ss_pred             ehhhhhHHHHHHHHHHHHhccCCCCCC
Confidence            999999999999999999999999854

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.8e-26  Score=189.91  Aligned_cols=170  Identities=14%  Similarity=0.212  Sum_probs=135.1

Q ss_pred             eeEEEEEEe--CCeEEEeecC---CCCCh-h--HHHHHHHHhcCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCC
Q 039246            7 LVFYACIAK--GSIILGEFSS---KEPAI-S--ETLAQECIDKTPRH-HLMFSHTVCKRTYAFLINGPLTYFVIHDEDLH   77 (253)
Q Consensus         7 ~I~Ya~Var--g~~iLae~s~---~~~nf-~--~~ia~~iL~kip~~-~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~   77 (253)
                      +|++++|+|  +++|||...+   .+|+. .  .+.++.+++++.+. +.+.|.+.+.|+|||++++|++|+|+||++||
T Consensus         1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP   80 (216)
T KOG0862|consen    1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP   80 (216)
T ss_pred             CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence            478999999  8999998654   23332 1  78899999999876 89999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCccccccccc
Q 039246           78 KGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLA  157 (253)
Q Consensus        78 ~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  157 (253)
                      +++||+||+||.++|.+.|+..  -.-+...||++. +|+++|++.-++   || |+++.                    
T Consensus        81 ~kLAF~YLedL~~EF~~~~~~~--~~~~~~RPY~Fi-eFD~~IQk~Kk~---yn-d~r~~--------------------  133 (216)
T KOG0862|consen   81 RKLAFSYLEDLAQEFDKSYGKN--IIQPASRPYAFI-EFDTFIQKTKKR---YN-DTRSQ--------------------  133 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc--cCCccCCCeeEE-ehhHHHHHHHHH---hc-CcHHH--------------------
Confidence            9999999999999999999853  111237899998 899999999998   65 55431                    


Q ss_pred             CCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHH
Q 039246          158 PLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQI  218 (253)
Q Consensus       158 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~m  218 (253)
                            +.+.++              +.++.+|+.||++|                 +..|...+  .+ .+|+.+.++.
T Consensus       134 ------~n~~~~--------------n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~-~~a~~in~~s  192 (216)
T KOG0862|consen  134 ------RNLLKL--------------NQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYP-KTAKGINRKS  192 (216)
T ss_pred             ------HHHHHH--------------HHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhH-HHHHHHHHHH
Confidence                  334442              48889999999999                 22233333  44 4788888888


Q ss_pred             HHhhhh
Q 039246          219 WKKHVW  224 (253)
Q Consensus       219 ww~~~K  224 (253)
                      -|.++.
T Consensus       193 l~~~~a  198 (216)
T KOG0862|consen  193 LIRKYA  198 (216)
T ss_pred             HHHHHH
Confidence            777776

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=99.83  E-value=4.8e-20  Score=135.74  Aligned_cols=81  Identities=21%  Similarity=0.399  Sum_probs=72.6

Q ss_pred             HHHHHHhcCCCCC-CeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCCcccccc
Q 039246           34 LAQECIDKTPRHH-LMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCF  112 (253)
Q Consensus        34 ia~~iL~kip~~~-~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l  112 (253)
                      +|++||+++|+.+ +|.+++.++|+|||+++||++||||||+++|+++||.||++|+++|.++|+.   .++.++.||++
T Consensus         1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~---~~~~~a~~~~~   77 (83)
T PF13774_consen    1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGG---DQIKSASPYSF   77 (83)
T ss_dssp             HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTT---TTTTTSTTTTT
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCc---chhcccCCcch
Confidence            5899999999655 8999999999999999999999999999999999999999999999999973   36778889999


Q ss_pred             ccchHH
Q 039246          113 QAHFDA  118 (253)
Q Consensus       113 ~~~F~~  118 (253)
                       .+|++
T Consensus        78 -~~F~~   82 (83)
T PF13774_consen   78 -KEFDS   82 (83)
T ss_dssp             -HHHHH
T ss_pred             -hhcCC
Confidence             78886

...

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=99.65  E-value=4.1e-17  Score=121.74  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246          164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW  224 (253)
Q Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K  224 (253)
                      ||+.+++              +++++|+++|.+|                 |++|+.+|  |+ ++|++++|+|||+++|
T Consensus         3 dkl~~i~--------------~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~-k~a~~l~r~~~~~~~k   67 (89)
T PF00957_consen    3 DKLEQIQ--------------EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFK-KNAKKLKRKMWWRNYK   67 (89)
T ss_dssp             HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHH--------------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Confidence            7888865              9999999999999                 88899988  99 6999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 039246          225 IVLGLDLFVCAVLFGIWLWVCR  246 (253)
Q Consensus       225 ~~i~i~~vv~~vi~~i~~~~C~  246 (253)
                      +++++++++++++++|++.+||
T Consensus        68 ~~~i~~~iv~~~~~~i~~~~~g   89 (89)
T PF00957_consen   68 LYIIIIIIVIIIILIIIIVICG   89 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHhHHhhhhhhhhHHHHHHhC
Confidence            9999999999999999999995

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=8.4e-17  Score=123.35  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             ccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 039246          184 FSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVWIVLGLDLFVCAVLFGIWLWV  244 (253)
Q Consensus       184 ~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K~~i~i~~vv~~vi~~i~~~~  244 (253)
                      ++||++|++||.+|                 ++.|+..|  |+ ++|++|||+|||+|+|+++++++|+++++++|++.+
T Consensus        35 q~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~-~~A~klkrk~wWkn~Km~~il~~v~~i~l~iiii~~  113 (116)
T KOG0860|consen   35 QAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE-KTAVKLKRKMWWKNCKMRIILGLVIIILLVVIIIYI  113 (116)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999                 88999988  99 699999999999999999999999988888877655

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2e-14  Score=117.24  Aligned_cols=156  Identities=11%  Similarity=0.078  Sum_probs=118.7

Q ss_pred             ceeEEEEEEeC----CeEEEeecC------CC----CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEe-CCEEEEE
Q 039246            6 GLVFYACIAKG----SIILGEFSS------KE----PAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLIN-GPLTYFV   70 (253)
Q Consensus         6 m~I~Ya~Varg----~~iLae~s~------~~----~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~-dgi~ylc   70 (253)
                      |.|++..|-+-    ..+|++.++      ++    +.|+..+++.+.++.+|+ .+.+++.+.|..|.... ||+++++
T Consensus         1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g-~rqsvk~~~Y~~h~yvrndgL~~V~   79 (198)
T KOG0861|consen    1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPG-QRQSVKHEEYLVHVYVRNDGLCGVL   79 (198)
T ss_pred             CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcc-cccccccceeEEEEEEecCCeeEEE
Confidence            67888888773    366766443      11    345467889999999985 59999999999999996 5999999


Q ss_pred             EEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcc
Q 039246           71 IHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSK  150 (253)
Q Consensus        71 itd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~  150 (253)
                      ++|.+||.|+||.+|++|.++|.....   ..+|+...+..   .-.|.|...+..   | +||.+.             
T Consensus        80 ~~D~eYP~rvA~tLL~kvld~~~~k~~---~~~W~~~~~~~---~~~~~L~~~l~k---y-qdP~ea-------------  136 (198)
T KOG0861|consen   80 IADDEYPVRVAFTLLNKVLDEFTTKVP---ATQWPVGETAD---LSYPYLDTLLSK---Y-QDPAEA-------------  136 (198)
T ss_pred             EecCcCchhHHHHHHHHHHHHHhhcCc---ccccCcCCCcC---CCchhHHHHHHH---h-cChhhh-------------
Confidence            999999999999999999999976654   25787332222   346788888886   6 477663             


Q ss_pred             cccccccCCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccch
Q 039246          151 SRRTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDH  211 (253)
Q Consensus       151 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a  211 (253)
                                   |++.++              |+|++|+|.|+...                 +++|..++  |+ ++|
T Consensus       137 -------------d~l~kv--------------Q~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfY-KsA  188 (198)
T KOG0861|consen  137 -------------DPLLKV--------------QNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFY-KSA  188 (198)
T ss_pred             -------------ChHHHH--------------HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHH-HHH
Confidence                         888885              59999999998765                 66676666  77 366


Q ss_pred             HH
Q 039246          212 RQ  213 (253)
Q Consensus       212 ~~  213 (253)
                      ++
T Consensus       189 KK  190 (198)
T KOG0861|consen  189 KK  190 (198)
T ss_pred             hh
Confidence            54

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=99.34  E-value=2.1e-12  Score=107.67  Aligned_cols=165  Identities=13%  Similarity=0.077  Sum_probs=111.5

Q ss_pred             ceeEEEEEEeCC--eEEEee-cCCCCChh-HHHHHHHHhcCC-CCCCeeEEEeCCeEEEEEEeC-CEEEEEEEcCCCCcc
Q 039246            6 GLVFYACIAKGS--IILGEF-SSKEPAIS-ETLAQECIDKTP-RHHLMFSHTVCKRTYAFLING-PLTYFVIHDEDLHKG   79 (253)
Q Consensus         6 m~I~Ya~Varg~--~iLae~-s~~~~nf~-~~ia~~iL~kip-~~~~k~s~~~~~~~fh~l~~d-gi~ylcitd~~~~~~   79 (253)
                      |.++|..+..|.  .+|++- +..+..|- ...+..+|.++- ...++.+.+.++|.|||+..+ |++|.|+++..+|++
T Consensus         1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~   80 (190)
T COG5143           1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK   80 (190)
T ss_pred             CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence            345565555553  444432 22222221 455677777764 334578889999999999975 999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcccccccccCC
Q 039246           80 ESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPL  159 (253)
Q Consensus        80 iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  159 (253)
                      +||+.|+++..+|...+...  ...+...++.+ .+|++++++  .    |+ +|...                      
T Consensus        81 la~~~~~~~~~~~~~s~~~~--~~~d~~~~~~~-~~~d~~~e~--~----y~-d~s~~----------------------  128 (190)
T COG5143          81 LAYGYLNSIATEFLKSSALE--QLIDDTVGIMR-VNIDKVIEK--G----YR-DPSIQ----------------------  128 (190)
T ss_pred             hhhHHHHhhccHhhhhhhHh--hcccCccchhh-hhHHHHHHh--h----cC-Cchhh----------------------
Confidence            99999999999998877632  11222334444 378888887  2    33 44331                      


Q ss_pred             CCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHH
Q 039246          160 LGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWK  220 (253)
Q Consensus       160 ~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww  220 (253)
                          |++.++              +.+++++|.+|.+|                 ++.|..++  |+ ++|++.+..+||
T Consensus       129 ----D~~d~l--------------~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~-k~akk~n~~~~~  189 (190)
T COG5143         129 ----DKLDQL--------------QQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFP-KSAKKSNLCCLI  189 (190)
T ss_pred             ----hHHHHH--------------HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhee
Confidence                666664              48889999888888                 55566655  66 477777777777


Q ss_pred             h
Q 039246          221 K  221 (253)
Q Consensus       221 ~  221 (253)
                      +
T Consensus       190 ~  190 (190)
T COG5143         190 N  190 (190)
T ss_pred             C
Confidence            4

>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.90  E-value=0.054  Score=48.29  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhhhh
Q 039246           32 ETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETR   99 (253)
Q Consensus        32 ~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~~~   99 (253)
                      ..+++.+|-.=..  +..+|.+++|..+|...|  +++|++|-..-+.-.-.=.||++|+..|...|...
T Consensus         5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~   72 (279)
T PF04086_consen    5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ   72 (279)
T ss_dssp             HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence            3455555533222  345799999999999976  69999999888876666689999999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.85  E-value=1.4  Score=42.55  Aligned_cols=88  Identities=18%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             eEEEEEEeCCeEEEeecCCCCChh---HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchHH
Q 039246            8 VFYACIAKGSIILGEFSSKEPAIS---ETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGESF   82 (253)
Q Consensus         8 I~Ya~Varg~~iLae~s~~~~nf~---~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~iaF   82 (253)
                      =.++.+.+|++||..|.....+|.   ..+++.+|-.=.  .+-.+++.+.|+..|-.+|  +++|+|+-.+-..-.-+=
T Consensus         3 d~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er--~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~   80 (587)
T KOG0781|consen    3 DQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSER--GGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVD   80 (587)
T ss_pred             ceeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhh--cCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHH
Confidence            357889999999999987665551   344444443321  1223378888888887764  799999998887777777


Q ss_pred             HHHHHHHHHHHHHhh
Q 039246           83 WFLNRVKSAFEEIFE   97 (253)
Q Consensus        83 ~FL~dI~~~F~~~~~   97 (253)
                      .+|+++.+.|...|.
T Consensus        81 ~ll~~v~~~f~e~~~   95 (587)
T KOG0781|consen   81 KLLNDVLNLFREKYD   95 (587)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            899999999999985

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.52  E-value=16  Score=28.82  Aligned_cols=50  Identities=16%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             eeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246           48 MFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE   97 (253)
Q Consensus        48 k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~   97 (253)
                      --....+++.+-|...+++.|+++++.+...-..+.||..+-+-+...++
T Consensus        47 ~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~   96 (141)
T PF01217_consen   47 SPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG   96 (141)
T ss_dssp             TSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred             ceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence            34678899999999899999999999999999999999999998888775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=83.76  E-value=2  Score=31.81  Aligned_cols=30  Identities=17%  Similarity=0.463  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039246          212 RQKAKQIWKKHVWIVLGLDLFVCAVLFGIW  241 (253)
Q Consensus       212 ~~l~r~mww~~~K~~i~i~~vv~~vi~~i~  241 (253)
                      +++.|+.|.-+.-+++.+.+++++++||+|
T Consensus        60 ~~l~r~~~~D~~li~~~~~~f~~~v~yI~~   89 (92)
T PF03908_consen   60 KKLERRDKTDRILIFFAFLFFLLVVLYILW   89 (92)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            346677777777888888888888888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	5e-17
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	2e-14
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	3e-05

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173

 Score = 75.5 bits (185), Expect = 5e-17
 Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 8   VFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLT 67
           + +A +A+G+ IL + +       E + ++ + K P  +   +++     + ++    + 
Sbjct: 56  ILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114

Query: 68  YFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIM 124
           Y  I D+D  +  +F FLN VK  F+  + +R+         +   + F +V    +
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTYGSRA----QTALPYAMNSEFSSVLAAQL 167

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169

 Score = 68.3 bits (166), Expect = 2e-14
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 2   ISNPGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFL 61
           ++    + +A +A+G+ IL + +       E + ++ + K P  +   +++     + ++
Sbjct: 40  LNKGMAILFAVVARGTTILAKHAWCGGNFLE-VTEQILAKIPSENNKLTYSHGNYLFHYI 98

Query: 62  INGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFC 121
               + Y  I D+D  +  +F FLN VK  F+  + +R+         +   + F +V  
Sbjct: 99  CQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRA----QTALPYAMNSEFSSVLA 154

Query: 122 EIM 124
             +
Sbjct: 155 AQL 157

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 9/127 (7%)

Query: 7   LVFYACIAKGSIIL--------GEFSSKEPAISETLAQECIDKTPRHHL-MFSHTVCKRT 57
           +V    IA+ +  L         E S ++    ++ A++   K         +      T
Sbjct: 2   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 61

Query: 58  YAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFD 117
           + ++I   + Y V+ +    K  +F +L  + S F+E    +        S   F     
Sbjct: 62  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 121

Query: 118 AVFCEIM 124
                 +
Sbjct: 122 KTKKLYI 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	100.0
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	100.0
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	99.97
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	99.94
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	99.91
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	99.77
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	99.68
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	99.15
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	99.11
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	99.09
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	98.44
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	98.41
1urq_A	63	M-tomosyn isoform; transport protein, tomosyn-snar	97.72
2fh5_A	185	Signal recognition particle receptor alpha subunit	97.69
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	97.54
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	94.75
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	85.65
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	85.41
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	83.42
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	81.73

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=100.00  E-value=1.8e-48  Score=328.26  Aligned_cols=170  Identities=18%  Similarity=0.326  Sum_probs=131.2

Q ss_pred             CceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246            5 PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF   84 (253)
Q Consensus         5 ~m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F   84 (253)
                      +|+|+|+|||||++|||||+..+||| .++++++|+++|+.++|.||+.|+|+|||+.++|++|+||||++||+++||+|
T Consensus         1 ~M~ilYa~VArg~~iLae~t~~~gnf-~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~f   79 (189)
T 4b93_A            1 SMAILFAVVARGTTILAKHAWCGGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF   79 (189)
T ss_dssp             CCSEEEEEEEETTEEEEEEESSEECH-HHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred             CCceEEEEEEeCCEEEEeCCCCCCCH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHH
Confidence            59999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCc
Q 039246           85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTVLAPLLGEPC  164 (253)
Q Consensus        85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  164 (253)
                      |++|+++|...|+.    .+.++.|++++.+|.+.|+++|++   |+ +|.+                          .|
T Consensus        80 L~~i~~eF~~~~~~----~~~~~~~~~~~~~f~~~l~~~~~~---y~-d~~~--------------------------~d  125 (189)
T 4b93_A           80 LNEVKKRFQTTYGS----RAQTALPYAMNSEFSSVLAAQLKH---HS-ENKS--------------------------LD  125 (189)
T ss_dssp             HHHHHHHHHHHHGG----GGGTCCTTTTHHHHHHHHHHHHHH---HH-CC------------------------------
T ss_pred             HHHHHHHHHhhccc----cccccCCccccchhhHHHHHHHHh---hh-cccc--------------------------hh
Confidence            99999999999974    356788999999999999999997   54 4433                          17


Q ss_pred             hhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246          165 KGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW  224 (253)
Q Consensus       165 k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K  224 (253)
                      ++.+++              +||++|++||.+|                 |++|+.+|  |+ ++|++|+|+|||+|+|
T Consensus       126 ~l~~~~--------------~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~-~~a~~l~r~mwwkn~K  189 (189)
T 4b93_A          126 KVMETQ--------------AQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFK-TTSRNLARAMCMKNIK  189 (189)
T ss_dssp             ---CCH--------------HHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC--------------------------
T ss_pred             hHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC
Confidence            888854              9999999999999                 88999988  99 6999999999999987

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=100.00  E-value=2.2e-38  Score=268.13  Aligned_cols=165  Identities=15%  Similarity=0.208  Sum_probs=110.4

Q ss_pred             eeEEEEEEeC--CeEEEeecCCC---CC----hhHHHHHHHHhcCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCC
Q 039246            7 LVFYACIAKG--SIILGEFSSKE---PA----ISETLAQECIDKTPR-HHLMFSHTVCKRTYAFLINGPLTYFVIHDEDL   76 (253)
Q Consensus         7 ~I~Ya~Varg--~~iLae~s~~~---~n----f~~~ia~~iL~kip~-~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~   76 (253)
                      +|+|+||||+  ++|||||++.+   |+    | .++++.+|+++|+ .+.|.+++.++|+|||+.++|++|+||||++|
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~-~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y   80 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQY-QSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF   80 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHH-HHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHH-HHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence            4899999998  89999998743   44    8 9999999999986 78999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHhhhhcccccCC-ccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCccccccc
Q 039246           77 HKGESFWFLNRVKSAFEEIFETRSILNFDN-VSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVDSSKSRRTV  155 (253)
Q Consensus        77 ~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~-~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  155 (253)
                      |+++||+||++|+++|...|+.    .+.+ +.||+++ +|++.|+++|++   |+ ||.+                   
T Consensus        81 p~r~af~fL~~i~~~F~~~~~~----~~~~~~~~~~~~-~f~~~l~~~~~~---y~-~~~~-------------------  132 (196)
T 2nut_C           81 PKKLAFAYLEDLHSEFDEQHGK----KVPTVSRPYSFI-EFDTFIQKTKKL---YI-DSRA-------------------  132 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT----TTTTCCSTTTTG-GGHHHHHHHHTT---TS-CCC--------------------
T ss_pred             chHHHHHHHHHHHHHHHHhccc----hhccccCCCchH-HHHHHHHHHHHH---hc-Cccc-------------------
Confidence            9999999999999999999973    3444 6799996 999999999998   65 5544                   


Q ss_pred             ccCCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHH
Q 039246          156 LAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAK  216 (253)
Q Consensus       156 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r  216 (253)
                             .|++.+++              .||++|++||.+|                 |++|+.+|  |+ ++|++++|
T Consensus       133 -------~d~l~~~~--------------~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~-~~a~~l~~  190 (196)
T 2nut_C          133 -------RRNLGSIN--------------TELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYR-QDAKYLNM  190 (196)
T ss_dssp             -------------------------------------CCEEEHHHHC---------------------------------
T ss_pred             -------hhHHHHHH--------------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence                   28888865              9999999999999                 88999988  99 69999999


Q ss_pred             HHHHhh
Q 039246          217 QIWKKH  222 (253)
Q Consensus       217 ~mww~~  222 (253)
                      +|||++
T Consensus       191 ~~~~~k  196 (196)
T 2nut_C          191 RSTYAK  196 (196)
T ss_dssp             ------
T ss_pred             HHHhcC
Confidence            999985

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.2e-35  Score=241.08  Aligned_cols=117  Identities=17%  Similarity=0.374  Sum_probs=112.8

Q ss_pred             CceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246            5 PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF   84 (253)
Q Consensus         5 ~m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F   84 (253)
                      -|+|+|||||||++|||||+..+||| ..+++++|+|+|++++|.+++.++|+|||++++|++|+||||+++|+++||+|
T Consensus        53 ~M~I~Ya~VArg~tiLAE~t~~~gnf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~F  131 (173)
T 4afi_A           53 AMAILFAVVARGTTILAKHAWCGGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF  131 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEESSCCCH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred             cccEEEEEEECCCEEEEEccCCCCCH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHH
Confidence            49999999999999999999999999 99999999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhc
Q 039246           85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGL  126 (253)
Q Consensus        85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~  126 (253)
                      |+||+++|.+.|+.    ++.++.||+|+++|+++|+++|++
T Consensus       132 LedI~~eF~~~yg~----~~~ta~pya~~~eF~~~L~~~M~~  169 (173)
T 4afi_A          132 LNEVKKRFQTTYGS----RAQTALPYAMNSEFSSVLAAQLKH  169 (173)
T ss_dssp             HHHHHHHHHHHHGG----GGGTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhch----hhhhccCcchhHHHHHHHHHHHHH
Confidence            99999999999973    577899999999999999999998

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=99.97  E-value=1.9e-30  Score=214.23  Aligned_cols=117  Identities=17%  Similarity=0.369  Sum_probs=108.6

Q ss_pred             CceeEEEEEEeCCeEEEeecCCCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 039246            5 PGLVFYACIAKGSIILGEFSSKEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWF   84 (253)
Q Consensus         5 ~m~I~Ya~Varg~~iLae~s~~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~F   84 (253)
                      .|+|+|++|+||++|||||++..+|| .++++.+|+++|+.++|.+|+.++|+|||+.+||++|+||||++||+++||+|
T Consensus        43 ~M~ilYa~VaRG~~VLae~t~~~gnf-~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~f  121 (169)
T 2vx8_A           43 GMAILFAVVARGTTILAKHAWCGGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF  121 (169)
T ss_dssp             SSCCCEEEEEETTEEEEEEESSCBSH-HHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred             CCceEEEEEEcCCEEEEEeccCCCCH-HHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHH
Confidence            39999999999999999999999999 99999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhc
Q 039246           85 LNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGL  126 (253)
Q Consensus        85 L~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~  126 (253)
                      |++|+++|.+.|+.    .|.++.+|+++++|++.|++.|++
T Consensus       122 LedI~~eF~~~y~~----~~~~a~pysf~~eF~~~Lk~~~~~  159 (169)
T 2vx8_A          122 LNEVKKRFQTTYGS----RAQTALPYAMNSEFSSVLAAQLKH  159 (169)
T ss_dssp             HHHHHHHHHHHHTT----GGGTCCTTTTHHHHHHHHSCC---
T ss_pred             HHHHHHHHHHHhhh----hhhccCCcchhHHHHHHHHHHHHH
Confidence            99999999999973    466778999998999999999997

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=99.94  E-value=3.2e-27  Score=199.80  Aligned_cols=158  Identities=11%  Similarity=0.152  Sum_probs=126.8

Q ss_pred             CceeEEEEEEe--C--CeEEEeecCCC----------CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEE-EEEeCCEEEE
Q 039246            5 PGLVFYACIAK--G--SIILGEFSSKE----------PAISETLAQECIDKTPRHHLMFSHTVCKRTYA-FLINGPLTYF   69 (253)
Q Consensus         5 ~m~I~Ya~Var--g--~~iLae~s~~~----------~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh-~l~~dgi~yl   69 (253)
                      +|.|++..|.+  +  .++|+...+.+          ++|...+++.+++++|+ ++|.+++.++|+|| |+.++|++|+
T Consensus         1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl   79 (199)
T 3kyq_A            1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV   79 (199)
T ss_dssp             CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred             CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence            48899999998  2  26777654422          46645666799999987 67999999999999 8999999999


Q ss_pred             EEEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCC--ccccccccchHHHHHHHHhccccCCCCCCCCCCCCCCCCCC
Q 039246           70 VIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDN--VSNHCFQAHFDAVFCEIMGLDLGFSSSSRSGSKDGRSSSVD  147 (253)
Q Consensus        70 citd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~--~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~~~~~~~~~~~d  147 (253)
                      ||||++||+++||+||++|+++|.+.|+..   .|..  +.++    .| +.|+++|++   |+ ||.+.          
T Consensus        80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~---~~~~~~~~~~----~f-~~l~~~m~~---Y~-dp~~~----------  137 (199)
T 3kyq_A           80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRI---DWPVGSPATI----HY-TALDGHLSR---YQ-NPREA----------  137 (199)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSCGG---GSTTCCTTTC----CC-CTHHHHHHH---TT-SGGGC----------
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHhccch---hhhccccccc----cc-HHHHHHHHH---hC-Cchhh----------
Confidence            999999999999999999999999999742   3433  2333    36 678888887   65 65542          


Q ss_pred             CcccccccccCCCCCCchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccc
Q 039246          148 SSKSRRTVLAPLLGEPCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYS  208 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~  208 (253)
                                      |++.+++              .||+||++||.+|                 |++|+.+|  |+ 
T Consensus       138 ----------------d~l~~~q--------------~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~-  186 (199)
T 3kyq_A          138 ----------------DPMSKVQ--------------AELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFY-  186 (199)
T ss_dssp             ----------------CCCHHHH--------------HHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHH-
T ss_pred             ----------------hhHHHHH--------------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-
Confidence                            7888864              9999999999999                 77788887  88 


Q ss_pred             cchHHHHH
Q 039246          209 GDHRQKAK  216 (253)
Q Consensus       209 ~~a~~l~r  216 (253)
                      ++|+++++
T Consensus       187 k~a~~lns  194 (199)
T 3kyq_A          187 KTARKQNS  194 (199)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            68988874

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=99.91  E-value=1.1e-23  Score=169.62  Aligned_cols=123  Identities=8%  Similarity=0.093  Sum_probs=101.1

Q ss_pred             CCceeEEEEEEeC----CeEEEeecCCC----------CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEE-EeCCEEE
Q 039246            4 NPGLVFYACIAKG----SIILGEFSSKE----------PAISETLAQECIDKTPRHHLMFSHTVCKRTYAFL-INGPLTY   68 (253)
Q Consensus         4 ~~m~I~Ya~Varg----~~iLae~s~~~----------~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l-~~dgi~y   68 (253)
                      +.|.|+|.+|+|+    +++|+++++.+          ++|...+++++++++|+ +.|.|++.++|+|||+ .+||++|
T Consensus         3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~~R~sv~~~~y~fH~~~~~~gl~~   81 (144)
T 3bw6_A            3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GQRQSIEEGNYIGHVYARSEGICG   81 (144)
T ss_dssp             CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-TEEEEEEETTEEEEEEECTTSEEE
T ss_pred             cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-CceEEEEeCCEEEEEEEecCCEEE
Confidence            5689999999997    79999998765          56557889999999998 4799999999999999 7899999


Q ss_pred             EEEEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCC-ccccccccchHHHHHHHHhccccCCCCCCC
Q 039246           69 FVIHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDN-VSNHCFQAHFDAVFCEIMGLDLGFSSSSRS  136 (253)
Q Consensus        69 lcitd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~-~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~  136 (253)
                      +||||++||+|+||+||++|+++|.+.|+..   .|.+ +.+++ +-.| +.|++.|++   |+ ||++
T Consensus        82 l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~---~~~~~~~~~~-~~~f-~~l~~~i~k---Yq-dp~~  141 (144)
T 3bw6_A           82 VLITDKEYPVRPAYTLLNKILDEYLVAHPKE---EWADVTETND-ALKM-KQLDTYISK---YQ-DPSQ  141 (144)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHHHHHSCGG---GTTTCSSCCG-GGCC-THHHHHHHH---TS-CC--
T ss_pred             EEEECCCCChhHHHHHHHHHHHHHHHHccch---hhhhcccccC-Ccch-HHHHHHHHH---hC-chhh
Confidence            9999999999999999999999999999742   3655 33221 2345 788888887   64 6654

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=99.77  E-value=7.7e-20  Score=135.87  Aligned_cols=68  Identities=13%  Similarity=0.208  Sum_probs=63.7

Q ss_pred             CchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhh
Q 039246          163 PCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHV  223 (253)
Q Consensus       163 ~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~  223 (253)
                      .|++.+++              +|++||++||.+|                 |++|+.+|  |+ ++|++++|+|||+|+
T Consensus         4 ~d~l~~vq--------------~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~-~~A~~l~rkmwwkn~   68 (91)
T 3hd7_A            4 MRRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYWWKNL   68 (91)
T ss_dssp             THHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHH--------------HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            38888864              9999999999999                 89999988  99 699999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhc
Q 039246          224 WIVLGLDLFVCAVLFGIWLWVC  245 (253)
Q Consensus       224 K~~i~i~~vv~~vi~~i~~~~C  245 (253)
                      |+++++++++++++++|++++|
T Consensus        69 K~~iii~~iv~~il~ii~~~~~   90 (91)
T 3hd7_A           69 KMMIILGVICAIILIIIIVYFS   90 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=99.68  E-value=2.2e-18  Score=133.92  Aligned_cols=68  Identities=13%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             CchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhh
Q 039246          163 PCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHV  223 (253)
Q Consensus       163 ~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~  223 (253)
                      .|++.+++              .||+||++||.+|                 |++|+.+|  |+ ++|++++|+|||+|+
T Consensus        32 ~d~l~~vq--------------~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~-k~A~kl~rkmwwkn~   96 (119)
T 2kog_A           32 NRRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYWWKNL   96 (119)
T ss_dssp             CSHHHHSS--------------HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHH-HHHHHHHHHHSCHHH
T ss_pred             chHHHHHH--------------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            38888864              9999999999999                 88899988  99 699999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhc
Q 039246          224 WIVLGLDLFVCAVLFGIWLWVC  245 (253)
Q Consensus       224 K~~i~i~~vv~~vi~~i~~~~C  245 (253)
                      |+++++++++++++++|++++|
T Consensus        97 K~~iii~~iv~iii~iIi~~~c  118 (119)
T 2kog_A           97 KMMIILGVICAIILIIIIVYFS  118 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhee
Confidence            9999999999999999999999

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}

Probab=99.15  E-value=1.9e-12  Score=92.30  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=39.0

Q ss_pred             chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246          164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW  224 (253)
Q Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K  224 (253)
                      |++.+++              .+|++|++||.+|                 |++|+.+|  |+ ++|++|+|+|||+|+|
T Consensus         8 d~l~~vq--------------~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~-~~a~~l~r~~ww~n~K   72 (74)
T 2nps_A            8 DKIKHVQ--------------NQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFS-NRSKQLRRQMWWRGCK   72 (74)
T ss_dssp             SSSHHHH--------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC----
T ss_pred             hHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence            7888864              9999999999999                 89999988  99 6999999999999999


Q ss_pred             HH
Q 039246          225 IV  226 (253)
Q Consensus       225 ~~  226 (253)
                      +.
T Consensus        73 ~~   74 (74)
T 2nps_A           73 IK   74 (74)
T ss_dssp             --
T ss_pred             cC
Confidence            74

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.11  E-value=5.1e-12  Score=94.38  Aligned_cols=48  Identities=13%  Similarity=0.194  Sum_probs=42.1

Q ss_pred             chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhhh
Q 039246          164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHVW  224 (253)
Q Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~K  224 (253)
                      +++.+++              .||++|++||.+|                 |++|..+|  |+ ++|++|+|+|||+|+|
T Consensus        30 d~l~~vq--------------~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~-k~A~kl~rkmwwkn~K   94 (96)
T 1sfc_A           30 RRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYWWKNLK   94 (96)
T ss_dssp             HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTC-
T ss_pred             cHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            8888865              9999999999999                 88999988  99 6999999999999999


Q ss_pred             HH
Q 039246          225 IV  226 (253)
Q Consensus       225 ~~  226 (253)
                      ++
T Consensus        95 ~~   96 (96)
T 1sfc_A           95 MM   96 (96)
T ss_dssp             --
T ss_pred             cC
Confidence            74

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.09  E-value=3.4e-12  Score=92.33  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=38.3

Q ss_pred             CchhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHHHhhh
Q 039246          163 PCKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIWKKHV  223 (253)
Q Consensus       163 ~~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mww~~~  223 (253)
                      .+++.+++              .+|++|++||.+|                 |+.|+.+|  |+ ++|++|+|+|||+|+
T Consensus        14 ~d~l~~vq--------------~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~-k~A~~l~rk~wwkn~   78 (80)
T 1l4a_A           14 SKRLQQTQ--------------AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFE-ASAGKLKRKFWWKNC   78 (80)
T ss_dssp             SCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTT-HHHHHHHHHCC----
T ss_pred             ccHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            38888865              9999999999999                 88899988  99 699999999999999


Q ss_pred             hH
Q 039246          224 WI  225 (253)
Q Consensus       224 K~  225 (253)
                      |+
T Consensus        79 K~   80 (80)
T 1l4a_A           79 KM   80 (80)
T ss_dssp             --
T ss_pred             cC
Confidence            95

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.44  E-value=1.1e-08  Score=70.01  Aligned_cols=35  Identities=9%  Similarity=0.205  Sum_probs=32.9

Q ss_pred             ccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHH
Q 039246          184 FSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIW  219 (253)
Q Consensus       184 ~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mw  219 (253)
                      +.+|++|++||.+|                 |++|+.+|  |+ ++|++|+|+||
T Consensus         8 q~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~-~~a~~l~r~mW   61 (61)
T 3b5n_A            8 QAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFK-RGANRVRKAMW   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhC
Confidence            49999999999999                 89999988  99 69999999999

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B

Probab=98.41  E-value=1.2e-08  Score=70.15  Aligned_cols=41  Identities=12%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHHH
Q 039246          164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQIW  219 (253)
Q Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~mw  219 (253)
                      |++.+++              .+|++|++||.+|                 |+.|+.+|  |+ ++|++++|+||
T Consensus         4 d~l~~v~--------------~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~-~~a~~l~r~mW   63 (63)
T 1n7s_A            4 RRLQQTQ--------------AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE-TSAAKLKRKYW   63 (63)
T ss_dssp             HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred             cHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhC
Confidence            7888864              9999999999999                 88999988  99 69999999998

>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1

Probab=97.72  E-value=1.8e-06  Score=59.12  Aligned_cols=34  Identities=3%  Similarity=-0.132  Sum_probs=31.2

Q ss_pred             ccccccccccccCC-----------------hHHHhhhc--ccccchHHHHHHH
Q 039246          184 FSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAKQI  218 (253)
Q Consensus       184 ~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r~m  218 (253)
                      +.++++|++||.+|                 |++|+.+|  |+ +.|++|++|+
T Consensus        10 ~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~-~~A~~l~~Ky   62 (63)
T 1urq_A           10 KGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFS-KHAHEMMLKY   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            39999999999999                 89999998  99 6999999885

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=97.69  E-value=0.00022  Score=58.82  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             ceeEEEEEEeCCeEEEeecCCCCCh---hHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcch
Q 039246            6 GLVFYACIAKGSIILGEFSSKEPAI---SETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGE   80 (253)
Q Consensus         6 m~I~Ya~Varg~~iLae~s~~~~nf---~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~i   80 (253)
                      |.=..+.+.+|++||..|+.....+   ...+++.+|-.=..  +..+|.+|+|..++..+|  +++|+++-..-.+-.-
T Consensus        10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y   87 (185)
T 2fh5_A           10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY   87 (185)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred             ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence            4446789999999999996443333   14555555433222  234788999999999976  6999999777665555


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccCCc----cccccccchHHHHHHHH
Q 039246           81 SFWFLNRVKSAFEEIFETRSILNFDNV----SNHCFQAHFDAVFCEIM  124 (253)
Q Consensus        81 aF~FL~dI~~~F~~~~~~~~~~~~~~~----~~~~l~~~F~~~L~~~m  124 (253)
                      .=.||++++..|...|.+... +....    .+..++..|...+++.-
T Consensus        88 iD~LL~~v~~~Fv~~Y~~~L~-~~~~~~~~~~~~~Fd~~F~~~l~~~e  134 (185)
T 2fh5_A           88 VDKLIDDVHRLFRDKYRTEIQ-QQSALSLLNGTFDFQNDFLRLLREAE  134 (185)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHH-SSSTHHHHSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-cccccccccccCchhHHHHHHHHHHH
Confidence            557999999999999975311 10111    12245556666666543

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=97.54  E-value=3.7e-06  Score=57.95  Aligned_cols=38  Identities=11%  Similarity=0.111  Sum_probs=31.0

Q ss_pred             chhhhcccccCCccccccccccccccccccccCC-----------------hHHHhhhc--ccccchHHHHH
Q 039246          164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCD-----------------DVTVQKNA--LYSGDHRQKAK  216 (253)
Q Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~N-----------------t~~L~~~a--f~~~~a~~l~r  216 (253)
                      +++.+++              .+|++|++||.+|                 |++|+.+|  |+ ++|++|+|
T Consensus         9 d~l~~vq--------------~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~-k~A~~l~r   65 (65)
T 1gl2_A            9 DRVRNLQ--------------SEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFK-TTSQKVAR   65 (65)
T ss_dssp             -CHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC---
T ss_pred             hHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHhcC
Confidence            8888864              9999999999999                 88999988  99 69999986

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}

Probab=94.75  E-value=0.01  Score=36.08  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=19.3

Q ss_pred             chhhhcccccCCccccccccccccccccccccCChHH
Q 039246          164 CKGLKKKKRSNGESEAMSREFSDVNEEKKVDVCDDVT  200 (253)
Q Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~v~~vk~im~~Nt~~  200 (253)
                      +++.+++              .||++|++||.+|-+.
T Consensus         9 d~l~~vq--------------~qvdeVk~IM~~NIdk   31 (38)
T 3fie_C            9 RRLQQTQ--------------AQVDEVVDIMRVNVDK   31 (38)
T ss_dssp             CSSCEES--------------CCCCCSCCCCTTTHHH
T ss_pred             hHHHHHH--------------HHHHHHHHHHHHhHHH
Confidence            7888854              9999999999999443

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=85.65  E-value=3.6  Score=37.55  Aligned_cols=92  Identities=12%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             ceeEEEEEEe-CC-eEEEee-cC-CCCChhHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchH
Q 039246            6 GLVFYACIAK-GS-IILGEF-SS-KEPAISETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGES   81 (253)
Q Consensus         6 m~I~Ya~Var-g~-~iLae~-s~-~~~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~ia   81 (253)
                      |+|...+|.. .+ .+|+-+ .. ...+.....-+.++.+-.....--.+..+++.|-|...+++.|+|+++.+..--..
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   80 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV   80 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            4455555544 44 444433 32 22222134444555432211112366789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 039246           82 FWFLNRVKSAFEEIFE   97 (253)
Q Consensus        82 F~FL~dI~~~F~~~~~   97 (253)
                      +.||..+.+-+...++
T Consensus        81 le~L~~~v~~l~~yf~   96 (423)
T 1w63_M           81 FSFLYKVVQVFSEYFK   96 (423)
T ss_dssp             HHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988887774

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=85.41  E-value=12  Score=29.34  Aligned_cols=49  Identities=6%  Similarity=0.003  Sum_probs=43.5

Q ss_pred             eEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246           49 FSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE   97 (253)
Q Consensus        49 ~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~   97 (253)
                      -.+..+++.|-|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus        48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~   96 (158)
T 1w63_Q           48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG   96 (158)
T ss_dssp             SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            3567899999999999999999999999999999999999888887774

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=83.42  E-value=13  Score=28.34  Aligned_cols=49  Identities=8%  Similarity=-0.006  Sum_probs=43.6

Q ss_pred             eEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHHHHhh
Q 039246           49 FSHTVCKRTYAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFE   97 (253)
Q Consensus        49 ~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~iaF~FL~dI~~~F~~~~~   97 (253)
                      -....+++.|-|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus        48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~   96 (142)
T 2vgl_S           48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH   96 (142)
T ss_dssp             SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4567899999998899999999999999999999999999988887775

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=81.73  E-value=17  Score=28.38  Aligned_cols=89  Identities=15%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             eeEEEEEEe--CCeEEEeecCCC-CChh--HHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchH
Q 039246            7 LVFYACIAK--GSIILGEFSSKE-PAIS--ETLAQECIDKTPRHHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLHKGES   81 (253)
Q Consensus         7 ~I~Ya~Var--g~~iLae~s~~~-~nf~--~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~~~ia   81 (253)
                      +|-+.+|-.  |.++|+-|=... .+..  ..+.+.+..++.+.+ .-....+++.|.|...+++.|+++++.+.+.-..
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i   90 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML   90 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence            344555543  778888764321 1210  222334444443323 2467789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 039246           82 FWFLNRVKSAFEEIF   96 (253)
Q Consensus        82 F~FL~dI~~~F~~~~   96 (253)
                      +.||..+-+-+...|
T Consensus        91 le~L~~~ve~l~~yf  105 (153)
T 3tjz_C           91 MTVLNCLFDSLSQML  105 (153)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1ifqa_	127	d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId	5e-06

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%)

Query: 8   VFYACIAKGS--IILGEFSSKEPAISETLAQECIDK--------TPRHHLMFSHTVCKRT 57
           V    IA+ +  + L     ++      L Q+   +          +     +      T
Sbjct: 2   VLLTMIARVADGLPLAASMQEDEQSGRDL-QQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 58  YAFLINGPLTYFVIHDEDLHKGESFWFLNRVKSAFEEIFETR--------SILNFDNV 107
           + ++I   + Y V+ +    K  +F +L  + S F+E    +        S + FD  
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTF 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	99.73
d2fh5a1	129	Signal recognition particle receptor alpha subunit	97.97
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	94.46
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	93.17

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.6e-26  Score=180.33  Aligned_cols=115  Identities=17%  Similarity=0.262  Sum_probs=100.6

Q ss_pred             eeEEEEEEeC--CeEEEeecCCCCChh------HHHHHHHHhcCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCC
Q 039246            7 LVFYACIAKG--SIILGEFSSKEPAIS------ETLAQECIDKTPR-HHLMFSHTVCKRTYAFLINGPLTYFVIHDEDLH   77 (253)
Q Consensus         7 ~I~Ya~Varg--~~iLae~s~~~~nf~------~~ia~~iL~kip~-~~~k~s~~~~~~~fh~l~~dgi~ylcitd~~~~   77 (253)
                      +|+|++|||+  ++||||+++.+++..      ...++.+|+++++ .+.|.|+..++|+|||+++||++||||||+++|
T Consensus         1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~   80 (127)
T d1ifqa_           1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   80 (127)
T ss_dssp             CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence            5899999994  589999987665431      4568899999975 468999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHhhhhcccccCC-ccccccccchHHHHHHHHhc
Q 039246           78 KGESFWFLNRVKSAFEEIFETRSILNFDN-VSNHCFQAHFDAVFCEIMGL  126 (253)
Q Consensus        78 ~~iaF~FL~dI~~~F~~~~~~~~~~~~~~-~~~~~l~~~F~~~L~~~m~~  126 (253)
                      +++||+||+||+++|.+.|+.    .+.+ ..||++. +|+.+|++.++.
T Consensus        81 ~~laF~fLeei~~eF~~~y~~----~i~~~~rpy~Fi-~Fd~~iqk~k~~  125 (127)
T d1ifqa_          81 KKLAFAYLEDLHSEFDEQHGK----KVPTVSRPYSFI-EFDTFIQKTKKL  125 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT----TTTTCCSTTTTG-GGHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhh----hhhcccCCcchH-HHHHHHHHHHHh
Confidence            999999999999999999974    3555 5699997 799999999885

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=5.6e-18  Score=133.67  Aligned_cols=122  Identities=9%  Similarity=0.075  Sum_probs=94.9

Q ss_pred             ceeEEEEEEe----CCeEEEeecCCC----------CChhHHHHHHHHhcCCCCCCeeEEEeCCeEEE-EEEeCCEEEEE
Q 039246            6 GLVFYACIAK----GSIILGEFSSKE----------PAISETLAQECIDKTPRHHLMFSHTVCKRTYA-FLINGPLTYFV   70 (253)
Q Consensus         6 m~I~Ya~Var----g~~iLae~s~~~----------~nf~~~ia~~iL~kip~~~~k~s~~~~~~~fh-~l~~dgi~ylc   70 (253)
                      |.|++..|.+    +.++|+...+.+          .+|...+++.+.++++++ .|.+++.++|+|| |+.++|++|+|
T Consensus         1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g-~r~sv~~~~y~~h~yv~~~gl~~l~   79 (140)
T d1ioua_           1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-ERQSIEEGNYIGHVYARSEGICGVL   79 (140)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSS-SEEEEEETTEEEEEECCSSSCEEEE
T ss_pred             CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCC-ceEEEEcCCeEEEEEEeeCCEEEEE
Confidence            7788888888    237777766533          243366889999999884 6999999999999 67789999999


Q ss_pred             EEcCCCCcchHHHHHHHHHHHHHHHhhhhcccccCCccccccccchHHHHHHHHhccccCCCCCCC
Q 039246           71 IHDEDLHKGESFWFLNRVKSAFEEIFETRSILNFDNVSNHCFQAHFDAVFCEIMGLDLGFSSSSRS  136 (253)
Q Consensus        71 itd~~~~~~iaF~FL~dI~~~F~~~~~~~~~~~~~~~~~~~l~~~F~~~L~~~m~~~~~~~~~~~~  136 (253)
                      |||.+||+|+||.||++|.++|.+.|+..   .|.. ...+.+..+.+.|.++|++   |. ||.+
T Consensus        80 i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~---~~~~-i~~~~~~~~~~~l~~~l~k---YQ-dP~~  137 (140)
T d1ioua_          80 ITDKQYPVRPAYTLLNKILDEYLVAHPKE---EWAD-VTETNDALKMKQLDTYISK---YQ-DPSQ  137 (140)
T ss_dssp             EBCTTSCHHHHHHHHHHHHHHHHHSSCHH---HHTT-CSCCCTTTSCHHHHHHHHH---TT-SSCG
T ss_pred             EECCCcchHHHHHHHHHHHHHHHHHcChH---hhhh-hhccccccchHHHHHHHHH---hC-chhh
Confidence            99999999999999999999999999742   3332 2222333466889999987   64 7764

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.2e-05  Score=59.45  Aligned_cols=113  Identities=17%  Similarity=0.171  Sum_probs=73.2

Q ss_pred             eEEEEEEeCCeEEEeecCCCCCh---hHHHHHHHHhcCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchHH
Q 039246            8 VFYACIAKGSIILGEFSSKEPAI---SETLAQECIDKTPRHHLMFSHTVCKRTYAFLING--PLTYFVIHDEDLHKGESF   82 (253)
Q Consensus         8 I~Ya~Varg~~iLae~s~~~~nf---~~~ia~~iL~kip~~~~k~s~~~~~~~fh~l~~d--gi~ylcitd~~~~~~iaF   82 (253)
                      =.++.+.+|++||..|+....++   ...+++.++-.=.  .+..+|..|+|..++..+|  +++|+++-..-..-.-.=
T Consensus         3 D~f~IftkGGiVLW~~~~~~~~~~~~IN~LI~~vlLEER--~~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~yvd   80 (129)
T d2fh5a1           3 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER--GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD   80 (129)
T ss_dssp             SEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred             cEEEEEeCCeEEEEeecCCCcccchhHHHHHHHhheecc--cCCCceeECCEEEEEEEeccCCEEEEEEEhhhhchHHHH
Confidence            35788999999999987544444   1444444443222  2345688899999999976  699999977776666666


Q ss_pred             HHHHHHHHHHHHHhhhhcccccCC----ccccccccchHHHHHHH
Q 039246           83 WFLNRVKSAFEEIFETRSILNFDN----VSNHCFQAHFDAVFCEI  123 (253)
Q Consensus        83 ~FL~dI~~~F~~~~~~~~~~~~~~----~~~~~l~~~F~~~L~~~  123 (253)
                      .||++++..|...|++... ....    ..++.++.+|...|++.
T Consensus        81 ~lL~~i~~~F~~~y~~~l~-~~~~~~~~~~~~~Fd~~F~~~l~~~  124 (129)
T d2fh5a1          81 KLIDDVHRLFRDKYRTEIQ-QQSALSLLNGTFDFQNDFLRLLREA  124 (129)
T ss_dssp             HHHHHHHHHHHHHTHHHHH-SSSTHHHHSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc-ccccccccccccchHHHHHHHHHHH
Confidence            7999999999999985411 1111    12445556666666554