Citrus Sinensis ID: 039249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHcccHHHHHcccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
EEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEHHHHHHHccccEEcHccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
mikqpigriegqaTDVEIARKEIKNVKAELVKLYAKHfgktpeqieadirrpkyfspseaveygimdkvlytekspedhgvvsdlkkaqli
Flexible Loop (DISEMBL)
mikqpigriegqatdveIARKEIKNVKAELVKLYAkhfgktpeqieadirrpkyfspSEAVEYGIMDKVLYTekspedhgvvsdlkkaqli
Low Complexity Region (SEG)
MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI
Disordered region (IsUnstruct)
***************VEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT*******************
Disordered Region (DISOPRED)
MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV**********************
Disordered Region (DISEMBL)
MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI
Disordered Region (DISPRO)
MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK********SDLK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKQPIGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
Q8LB10	305	ATP-dependent Clp proteas	yes	no	1.0	0.298	0.769	1e-36
Q60107	207	ATP-dependent Clp proteas	yes	no	0.769	0.338	0.528	2e-14
A1JNN2	207	ATP-dependent Clp proteas	yes	no	0.769	0.338	0.528	2e-14
B4EU53	207	ATP-dependent Clp proteas	yes	no	0.813	0.357	0.493	2e-14
Q5P161	212	ATP-dependent Clp proteas	yes	no	0.769	0.330	0.514	2e-14
Q6D827	207	ATP-dependent Clp proteas	yes	no	0.769	0.338	0.542	2e-14
Q1LTJ9	205	ATP-dependent Clp proteas	yes	no	0.769	0.341	0.5	1e-13
P0A1D7	207	ATP-dependent Clp proteas	yes	no	0.769	0.338	0.5	1e-13
P0A1D8	207	ATP-dependent Clp proteas	N/A	no	0.769	0.338	0.5	1e-13
B4TMC6	207	ATP-dependent Clp proteas	yes	no	0.769	0.338	0.5	1e-13

>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 83/91 (91%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MIKQPI R +GQATDVEIARKEIK++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EA
Sbjct: 215 MIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEA 274

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKV+Y E+  +D GVVSDLKKAQLI
Sbjct: 275 VEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q60107|CLPP_YEREN ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica GN=clpP PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  KEI  VK+ + +L AKH GK+ E+IE D  R ++ S  EA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEA 193

Query: 61  VEYGIMDKVL 70
           VEYG++D V 
Sbjct: 194 VEYGLVDSVF 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Yersinia enterocolitica (taxid: 630)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A1JNN2|CLPP_YERE8 ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=clpP PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  KEI  VK+ + +L AKH GK+ E+IE D  R ++ S  EA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEA 193

Query: 61  VEYGIMDKVL 70
           VEYG++D V 
Sbjct: 194 VEYGLVDSVF 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B4EU53|CLPP_PROMH ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis (strain HI4320) GN=clpP PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD++I  +EI  VK+ + +L A+H GK+ E+IE D  R ++ S +EA
Sbjct: 134 MIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDTERDRFLSANEA 193

Query: 61  VEYGIMDKVLYTEKS 75
           +EYG++DKV YT++S
Sbjct: 194 LEYGLVDKV-YTQRS 207

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Proteus mirabilis (strain HI4320) (taxid: 529507)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q5P161|CLPP_AROAE ATP-dependent Clp protease proteolytic subunit OS=Aromatoleum aromaticum (strain EbN1) GN=clpP PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 52/70 (74%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQA+D+EI  +EI  ++A+L ++ AKH G+  EQIE D  R ++ S ++A
Sbjct: 137 MIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADA 196

Query: 61  VEYGIMDKVL 70
           VEYGI+DKVL
Sbjct: 197 VEYGIVDKVL 206

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Aromatoleum aromaticum (strain EbN1) (taxid: 76114)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q6D827|CLPP_ERWCT ATP-dependent Clp protease proteolytic subunit OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=clpP PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  KEI  VKA++ +L AKH G+  E IE D  R ++ S SEA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSASEA 193

Query: 61  VEYGIMDKVL 70
           VEYG++D V 
Sbjct: 194 VEYGLVDSVF 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q1LTJ9|CLPP_BAUCH ATP-dependent Clp protease proteolytic subunit OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=clpP PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD++I  KEI  VK  + +L AKH GKT + IE D  R ++ S +EA
Sbjct: 132 MIHQPMGGFQGQATDIQIHAKEILKVKNRMNELMAKHIGKTLQVIEQDTERDRFLSANEA 191

Query: 61  VEYGIMDKVL 70
           V+YG++D +L
Sbjct: 192 VDYGLVDAIL 201

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Baumannia cicadellinicola subsp. Homalodisca coagulata (taxid: 374463)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|P0A1D7|CLPP_SALTY ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=clpP PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193

Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|P0A1D8|CLPP_SALTI ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193

Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Salmonella typhi (taxid: 90370)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B4TMC6|CLPP_SALSV ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193

Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Salmonella schwarzengrund (strain CVM19633) (taxid: 439843)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
359495737	297	PREDICTED: ATP-dependent Clp protease pr	1.0	0.306	0.824	9e-38
297745678	282	unnamed protein product [Vitis vinifera]	1.0	0.322	0.824	1e-37
359497547	129	PREDICTED: ATP-dependent Clp protease pr	1.0	0.705	0.824	1e-37
296085762	91	unnamed protein product [Vitis vinifera]	1.0	1.0	0.824	2e-37
449459004	304	PREDICTED: ATP-dependent Clp protease pr	1.0	0.299	0.824	7e-37
260766931	305	ATP-dependent Clp protease [Eriobotrya j	1.0	0.298	0.791	7e-36
224126447	310	predicted protein [Populus trichocarpa]	1.0	0.293	0.791	3e-35
297800408	305	hypothetical protein ARALYDRAFT_493172 [	1.0	0.298	0.780	3e-35
296085709	169	unnamed protein product [Vitis vinifera]	0.967	0.520	0.795	3e-35
19698857	305	unknown protein [Arabidopsis thaliana] g	1.0	0.298	0.769	6e-35

>gi|359495737|ref|XP_003635075.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Vitis vinifera]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 85/91 (93%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MIKQPI R +GQATD+++ARKE+KNVKAELVKLYAKH GK+PE+IEADIRRPKYFSPSEA
Sbjct: 207 MIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEADIRRPKYFSPSEA 266

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKVLY E+S ED GVV+DLKKAQLI
Sbjct: 267 VEYGIIDKVLYNERSSEDRGVVADLKKAQLI 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745678|emb|CBI40932.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 85/91 (93%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MIKQPI R +GQATD+++ARKE+KNVKAELVKLYAKH GK+PE+IEADIRRPKYFSPSEA
Sbjct: 192 MIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEADIRRPKYFSPSEA 251

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKVLY E+S ED GVV+DLKKAQLI
Sbjct: 252 VEYGIIDKVLYNERSSEDRGVVADLKKAQLI 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497547|ref|XP_003635562.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like, partial [Vitis vinifera]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 85/91 (93%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MIKQPI R +GQATD+++ARKE+KNVKAELVKLYAKH GK+PE+IEADIRRPKYFSPSEA
Sbjct: 39  MIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEADIRRPKYFSPSEA 98

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKVLY E+S ED GVV+DLKKAQLI
Sbjct: 99  VEYGIIDKVLYNERSSEDRGVVADLKKAQLI 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085762|emb|CBI29573.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 85/91 (93%)

Query: 1  MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
          MIKQPI R +GQATD+++ARKE+KNVKAELVKLYAKH GK+PE+IEADIRRPKYFSPSEA
Sbjct: 1  MIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEADIRRPKYFSPSEA 60

Query: 61 VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
          VEYGI+DKVLY E+S ED GVV+DLKKAQLI
Sbjct: 61 VEYGIIDKVLYNERSSEDRGVVADLKKAQLI 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459004|ref|XP_004147236.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus] gi|449510487|ref|XP_004163680.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 84/91 (92%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MIK+PI R +GQATDVEIARKE++NVKAELVKLYAKH GK+ E+IEADIRRPKYFSPSEA
Sbjct: 214 MIKEPIARFQGQATDVEIARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEA 273

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKVLY E++ ED GVVSDLKKAQLI
Sbjct: 274 VEYGIIDKVLYNERATEDRGVVSDLKKAQLI 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260766931|gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           M+KQPI R +GQATD+E+AR+E++NVK ELVKL+AKH GK+ EQIEADIRRPKYFSPSEA
Sbjct: 214 MMKQPIARFQGQATDIELARREVRNVKDELVKLFAKHVGKSTEQIEADIRRPKYFSPSEA 273

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKVLY E+S ED GVVSDLKKAQLI
Sbjct: 274 VEYGIIDKVLYNERSTEDRGVVSDLKKAQLI 304

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126447|ref|XP_002329556.1| predicted protein [Populus trichocarpa] gi|118483146|gb|ABK93479.1| unknown [Populus trichocarpa] gi|222870265|gb|EEF07396.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 81/91 (89%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           M+KQPIGR +GQATDVE+ARKEIKNVK ELV L AKH GK PE+IEADI RPKYFSP+EA
Sbjct: 220 MMKQPIGRFQGQATDVELARKEIKNVKTELVNLLAKHIGKLPEEIEADISRPKYFSPTEA 279

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKV+Y E++ ED GVVSDLKKAQLI
Sbjct: 280 VEYGIIDKVIYNERTTEDRGVVSDLKKAQLI 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800408|ref|XP_002868088.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata] gi|297313924|gb|EFH44347.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 83/91 (91%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MIKQPI R +GQATDVEIARKEIK++K E+VKLY+KH GK+PEQIEAD++RPKYFSPSEA
Sbjct: 215 MIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPSEA 274

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKV+Y E+  +D GVVSDLKKAQLI
Sbjct: 275 VEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085709|emb|CBI29508.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 80/88 (90%)

Query: 4   QPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63
            PI R++GQATD+++ARKE+KNVKAELVKLYAKH GK+PEQIEADIRRPKYFSPSE VEY
Sbjct: 82  HPIARLQGQATDIDLARKEVKNVKAELVKLYAKHVGKSPEQIEADIRRPKYFSPSEGVEY 141

Query: 64  GIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
            I+DKVLY E+S ED GVV+DLKKAQLI
Sbjct: 142 SIIDKVLYNERSSEDRGVVADLKKAQLI 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19698857|gb|AAL91164.1| unknown protein [Arabidopsis thaliana] gi|23197684|gb|AAN15369.1| unknown protein [Arabidopsis thaliana]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 83/91 (91%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MIKQPI R +GQATDVEIARKEIK++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EA
Sbjct: 215 MIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEA 274

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
           VEYGI+DKV+Y E+  +D GVVSDLKKAQLI
Sbjct: 275 VEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
TAIR|locus:2130449	305	CLPR4 "CLP protease R subunit	1.0	0.298	0.769	1.3e-34
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.769	0.338	0.5	1.3e-13
UNIPROTKB|Q2KHU4	272	CLPP "Putative ATP-dependent C	0.835	0.279	0.461	8.8e-13
MGI|MGI:1858213	272	Clpp "ClpP caseinolytic peptid	0.835	0.279	0.461	8.8e-13
RGD|1588583	272	Clpp "ClpP caseinolytic peptid	0.835	0.279	0.461	8.8e-13
UNIPROTKB|Q16740	277	CLPP "Putative ATP-dependent C	0.835	0.274	0.461	9.8e-13
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.813	0.379	0.445	2.4e-12
UNIPROTKB|E2QUV8	301	CLPP "ATP-dependent Clp protea	0.835	0.252	0.461	2.5e-12
ZFIN|ZDB-GENE-030131-7860	266	clpp "ClpP caseinolytic peptid	0.769	0.263	0.457	3e-12
UNIPROTKB|F1SBT2	273	CLPP "ATP-dependent Clp protea	0.835	0.278	0.448	1e-11

TAIR|locus:2130449 CLPR4 "CLP protease R subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 70/91 (76%), Positives = 83/91 (91%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MIKQPI R +GQATDVEIARKEIK++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EA
Sbjct:   215 MIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEA 274

Query:    61 VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
             VEYGI+DKV+Y E+  +D GVVSDLKKAQLI
Sbjct:   275 VEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct:   134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193

Query:    61 VEYGIMDKVL 70
             VEYG++D +L
Sbjct:   194 VEYGLVDSIL 203

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

UNIPROTKB|Q2KHU4 CLPP "Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 8.8e-13, P = 8.8e-13
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct:   172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query:    61 VEYGIMDKVLYTEKSPED 78
              E+GI+DKVL     P+D
Sbjct:   232 QEFGILDKVLV--HPPQD 247

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:1858213 Clpp "ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 8.8e-13, P = 8.8e-13
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct:   172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query:    61 VEYGIMDKVLYTEKSPED 78
              E+GI+DKVL     P+D
Sbjct:   232 QEFGILDKVLV--HPPQD 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISA

GO:0008233 "peptidase activity" evidence=ISA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

RGD|1588583 Clpp "ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 8.8e-13, P = 8.8e-13
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct:   172 MIHQPSGGARGQATDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 231

Query:    61 VEYGIMDKVLYTEKSPED 78
              E+GI+DKVL     P+D
Sbjct:   232 QEFGILDKVLV--HPPQD 247

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IDA

UNIPROTKB|Q16740 CLPP "Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 9.8e-13, P = 9.8e-13
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct:   176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query:    61 VEYGIMDKVLYTEKSPED 78
              E+GI+DKVL     P+D
Sbjct:   236 QEFGILDKVLV--HPPQD 251

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008233 "peptidase activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 33/74 (44%), Positives = 49/74 (66%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP+G ++GQATD++I  +EI  ++  L +L  KH G+  E+IE D  R  + S +EA
Sbjct:   122 MIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEA 181

Query:    61 VEYGIMDKVLYTEK 74
              EYGI+D+V+   K
Sbjct:   182 KEYGIIDEVITVRK 195

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|E2QUV8 CLPP "ATP-dependent Clp protease proteolytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct:   200 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLQVIESAMERDRYMSPMEA 259

Query:    61 VEYGIMDKVLYTEKSPED 78
              E+GI+DKVL     P+D
Sbjct:   260 QEFGILDKVLV--HPPQD 275

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-7860 clpp "ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             M+ QP G   GQATD+ I  +EI  +K ++  +Y+KH G+  E IE+ + R +Y SP EA
Sbjct:   147 MVHQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETIESVMERDRYMSPMEA 206

Query:    61 VEYGIMDKVL 70
              ++GI+DKVL
Sbjct:   207 QDFGIIDKVL 216

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|F1SBT2 CLPP "ATP-dependent Clp protease proteolytic subunit" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 35/78 (44%), Positives = 48/78 (61%)

Query:     1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
             MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + I   + R +Y SP EA
Sbjct:   172 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIVKAMERDRYMSPMEA 231

Query:    61 VEYGIMDKVLYTEKSPED 78
              E+GI+DKVL     P+D
Sbjct:   232 QEFGILDKVLV--HPPQD 247

GO:0005739 "mitochondrion" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LB10	CLPR4_ARATH	No assigned EC number	0.7692	1.0	0.2983	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.92	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	91
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	2e-27
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	2e-24
pfam00574	182	pfam00574, CLP_protease, Clp protease	6e-24
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	6e-22
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	1e-20
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	3e-19
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	2e-17
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	2e-16
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	9e-16
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	1e-14
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	4e-14
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	6e-10
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	7e-10
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	4e-09
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	7e-08

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 97.5 bits (244), Expect = 2e-27
 Identities = 33/69 (47%), Positives = 46/69 (66%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G   GQA+D+EI  KEI  ++  L ++ AKH G+  E+IE D  R +Y S  EA
Sbjct: 103 MIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEA 162

Query: 61  VEYGIMDKV 69
            EYG++DK+
Sbjct: 163 KEYGLIDKI 171

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score = 90.2 bits (225), Expect = 2e-24
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  +K  L ++ A+H G+  E+IE D  R  + S  EA
Sbjct: 125 MIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEA 184

Query: 61  VEYGIMDKVL 70
            EYG++D+VL
Sbjct: 185 KEYGLIDEVL 194

Length = 200

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score = 88.7 bits (221), Expect = 6e-24
 Identities = 31/73 (42%), Positives = 49/73 (67%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP G  +GQA+D+EI  +EI  ++  L ++YA+H G+  E+IE D+ R  + S  EA
Sbjct: 110 MIHQPSGGAQGQASDIEIQAEEILKIRERLNEIYAEHTGQPLEKIEKDLDRDTFMSAEEA 169

Query: 61  VEYGIMDKVLYTE 73
            EYG++D+V+ + 
Sbjct: 170 KEYGLIDEVIESR 182

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score = 84.2 bits (209), Expect = 6e-22
 Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 1   MIKQP--IGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 58
           +I QP   G I GQA+D+EI  +EI  ++  L ++ A+H G++ E+I  D  R K+ +  
Sbjct: 129 LIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAE 188

Query: 59  EAVEYGIMDKVLYTEK 74
           EA +YG++D+++ + +
Sbjct: 189 EAKDYGLVDQIITSYR 204

Length = 207

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score = 81.1 bits (201), Expect = 1e-20
 Identities = 34/70 (48%), Positives = 48/70 (68%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP G  +GQA+D+EI  +EI  +K  L ++YA+H G+T E+IE D  R  + S  EA
Sbjct: 121 MIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEA 180

Query: 61  VEYGIMDKVL 70
            EYG++DKV+
Sbjct: 181 KEYGLIDKVI 190

Length = 200

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score = 77.1 bits (190), Expect = 3e-19
 Identities = 35/70 (50%), Positives = 46/70 (65%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI   EI  +K  L  + A+H G++ EQIE D  R  + S  EA
Sbjct: 121 MIHQPLGGAQGQATDIEIQANEILRLKGLLNDILAEHTGQSLEQIERDTERDFFMSAEEA 180

Query: 61  VEYGIMDKVL 70
            EYG++DKVL
Sbjct: 181 KEYGLIDKVL 190

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 27/71 (38%), Positives = 46/71 (64%)

Query: 4   QPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63
           QP     GQATD++I  KE+ + K  ++++ +++ G+T E++  D  R  Y +P EA EY
Sbjct: 146 QPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEY 205

Query: 64  GIMDKVLYTEK 74
           G++D+VL + K
Sbjct: 206 GLIDRVLESRK 216

Length = 222

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 70.3 bits (172), Expect = 2e-16
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQA+D+EI  +EI+ +K EL  + A H G   +++ AD  R  + +  EA
Sbjct: 148 MIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEA 207

Query: 61  VEYGIMDKVLYTEK 74
            EYG++D+VL  + 
Sbjct: 208 KEYGMIDEVLIKKP 221

Length = 221

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 67.3 bits (164), Expect = 9e-16
 Identities = 28/69 (40%), Positives = 38/69 (55%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP G   G ATD+ I    +  V+  LV  YA   G++ E++ AD+ R  + S  EA
Sbjct: 94  MIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREA 153

Query: 61  VEYGIMDKV 69
           VEYG  D +
Sbjct: 154 VEYGFADTI 162

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G   GQA+D+ I   EI  +K  L    ++  G+  E+I+ D  R  + SPSEA
Sbjct: 119 MIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEA 178

Query: 61  VEYGIMDKVLYTEKSP 76
           VEYG++D V+  +K P
Sbjct: 179 VEYGLIDLVI--DKRP 192

Length = 196

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score = 63.7 bits (156), Expect = 4e-14
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 1   MIKQP-IGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSE 59
           MI QP     EGQA++  +  +E+  ++  + ++YA+  GK    I  D+ R  + S +E
Sbjct: 124 MIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATE 183

Query: 60  AVEYGIMDKVLYTEKSP 76
           A  YGI+D V    +  
Sbjct: 184 AKAYGIVDLVAVNNEEE 200

Length = 200

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 52.9 bits (127), Expect = 6e-10
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           ++ QP+   +G ATD+EI   E+  VK+EL  + AK  G+  +++E D  R  +   S A
Sbjct: 117 LLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSA 176

Query: 61  VEYGIMDKVLYTEK 74
           V+YG++ +V+ T  
Sbjct: 177 VKYGLVFEVVETRL 190

Length = 197

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 51.8 bits (125), Expect = 7e-10
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI  P     G A D+  A   +  +   +   YA+  G + E+I A +    + +  EA
Sbjct: 92  MIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEA 151

Query: 61  VEYGIMDKV 69
           VE G  D++
Sbjct: 152 VELGFADEI 160

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI Q      G   D+E+  KE+  ++  LV +Y +H     E++  D+ R  + SP EA
Sbjct: 121 MIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEA 180

Query: 61  VEYGIMDKVLYTEKSPE 77
             YG++D V+   +   
Sbjct: 181 KAYGLIDSVIEPTRVKR 197

Length = 201

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 46.6 bits (111), Expect = 7e-08
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 1   MIKQPIGRIEGQA--TDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 58
               PIG   G    T  E  ++ I    A  + L A++ G+T E++E DI +    +  
Sbjct: 91  GSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQ 150

Query: 59  EAVEYGIMDKV 69
           EA+EYG++D +
Sbjct: 151 EALEYGLVDAL 161

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	99.96
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	99.95
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	99.95
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	99.94
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	99.94
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	99.93
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	99.93
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	99.91
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	99.91
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	99.9
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.88
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	99.86
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	99.86
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	99.85
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.63
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.46
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.42
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	98.9
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	98.76
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	98.41
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	97.94
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	97.88
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	97.87
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	97.83
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.7
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.57
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	96.86
PRK10949	618	protease 4; Provisional	95.74
PRK11778	330	putative inner membrane peptidase; Provisional	95.08
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	94.18
PRK06213	229	enoyl-CoA hydratase; Provisional	93.87
PRK05869	222	enoyl-CoA hydratase; Validated	93.34
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	92.84
PRK05862	257	enoyl-CoA hydratase; Provisional	92.77
PRK06494	259	enoyl-CoA hydratase; Provisional	92.76
PRK06144	262	enoyl-CoA hydratase; Provisional	92.51
PRK08259	254	enoyl-CoA hydratase; Provisional	92.4
PRK07799	263	enoyl-CoA hydratase; Provisional	92.19
PRK08150	255	enoyl-CoA hydratase; Provisional	91.87
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	91.73
PRK08139	266	enoyl-CoA hydratase; Validated	91.71
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	91.68
PRK09245	266	enoyl-CoA hydratase; Provisional	91.66
PRK06563	255	enoyl-CoA hydratase; Provisional	91.64
PRK09076	258	enoyl-CoA hydratase; Provisional	91.63
PRK06495	257	enoyl-CoA hydratase; Provisional	91.57
PRK06143	256	enoyl-CoA hydratase; Provisional	91.55
PRK07658	257	enoyl-CoA hydratase; Provisional	91.47
PRK07511	260	enoyl-CoA hydratase; Provisional	91.46
PRK07327	268	enoyl-CoA hydratase; Provisional	91.35
PRK05980	260	enoyl-CoA hydratase; Provisional	91.19
PRK07260	255	enoyl-CoA hydratase; Provisional	91.07
PRK08252	254	enoyl-CoA hydratase; Provisional	90.87
PRK08290	288	enoyl-CoA hydratase; Provisional	90.81
PRK06023	251	enoyl-CoA hydratase; Provisional	90.77
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	90.59
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	90.57
PLN02600	251	enoyl-CoA hydratase	90.51
PRK07659	260	enoyl-CoA hydratase; Provisional	90.48
PLN02921	327	naphthoate synthase	90.41
PRK06190	258	enoyl-CoA hydratase; Provisional	90.17
PRK08138	261	enoyl-CoA hydratase; Provisional	89.8
PRK07938	249	enoyl-CoA hydratase; Provisional	89.74
PLN02888	265	enoyl-CoA hydratase	89.65
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	89.56
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	89.56
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	89.45
PRK07657	260	enoyl-CoA hydratase; Provisional	89.43
PRK06688	259	enoyl-CoA hydratase; Provisional	89.25
PRK08788	287	enoyl-CoA hydratase; Validated	89.19
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	89.12
PRK08258	277	enoyl-CoA hydratase; Provisional	88.88
PRK10949	618	protease 4; Provisional	88.86
PRK07509	262	enoyl-CoA hydratase; Provisional	88.81
PRK08321	302	naphthoate synthase; Validated	88.64
PRK05981	266	enoyl-CoA hydratase; Provisional	88.55
PRK06127	269	enoyl-CoA hydratase; Provisional	88.35
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	88.22
PRK05995	262	enoyl-CoA hydratase; Provisional	88.17
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	88.17
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	88.02
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	88.0
PRK08140	262	enoyl-CoA hydratase; Provisional	87.65
PRK06210	272	enoyl-CoA hydratase; Provisional	87.62
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	87.57
PRK12478	298	enoyl-CoA hydratase; Provisional	87.45
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	87.24
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	87.17
PRK05870	249	enoyl-CoA hydratase; Provisional	86.98
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	86.89
PRK05864	276	enoyl-CoA hydratase; Provisional	86.88
PRK08260	296	enoyl-CoA hydratase; Provisional	86.75
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	86.63
PRK06142	272	enoyl-CoA hydratase; Provisional	86.48
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	85.82
PRK08272	302	enoyl-CoA hydratase; Provisional	84.94
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	84.83
PRK07468	262	enoyl-CoA hydratase; Provisional	84.78
PRK07827	260	enoyl-CoA hydratase; Provisional	84.66
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	84.51
PRK07854	243	enoyl-CoA hydratase; Provisional	83.46
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	82.56
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	82.49
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	82.36
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	80.37

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.96  E-value=6.3e-29  Score=177.64  Aligned_cols=75  Identities=45%  Similarity=0.753  Sum_probs=73.1

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      |||||+|+++|+++|++++|+++++++..+.++|+++||++.++|..+|+||+||||+||++|||||+|++....
T Consensus       121 mIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~  195 (200)
T COG0740         121 MIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA  195 (200)
T ss_pred             EEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998764

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=99.95  E-value=3.1e-28  Score=176.46  Aligned_cols=75  Identities=36%  Similarity=0.635  Sum_probs=72.6

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      |||||+++++|+++|+++++++|+++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++...
T Consensus       143 MIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~~  217 (222)
T PRK12552        143 VLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRKD  217 (222)
T ss_pred             EeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCCc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987643

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.95  E-value=1.4e-27  Score=170.92  Aligned_cols=77  Identities=30%  Similarity=0.538  Sum_probs=74.0

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKSPE   77 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~~~   77 (91)
                      |||||+++++|+++|+++++++|+++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++.+...
T Consensus       121 MIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~~~~  197 (201)
T PRK14513        121 MIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTRVKR  197 (201)
T ss_pred             EEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999876543

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.94  E-value=5.1e-27  Score=170.02  Aligned_cols=73  Identities=41%  Similarity=0.689  Sum_probs=71.4

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      |||||++++.|+++|+++++++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|++++
T Consensus       148 MiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~  220 (221)
T PRK14514        148 MIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK  220 (221)
T ss_pred             EeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999864

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.94  E-value=6.4e-27  Score=166.80  Aligned_cols=74  Identities=41%  Similarity=0.624  Sum_probs=72.1

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |||||++++.|+++|+++++++|+++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.+
T Consensus       119 MIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~~  192 (196)
T PRK12551        119 MIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKRP  192 (196)
T ss_pred             EEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999764

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.4e-26  Score=169.12  Aligned_cols=75  Identities=45%  Similarity=0.692  Sum_probs=72.7

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      |||||.+++.|++.|+.++|+|+.++++.+.++|+++||+|.|+|.++|+||+||||+||+||||||.|++.+..
T Consensus       186 MIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p~~  260 (275)
T KOG0840|consen  186 MIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHPPE  260 (275)
T ss_pred             EEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCCcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997543

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=99.93  E-value=8.6e-26  Score=161.37  Aligned_cols=74  Identities=32%  Similarity=0.555  Sum_probs=71.6

Q ss_pred             CCCCCCcc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGR-IEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~-~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |||||+++ +.|+++|+++++++|+++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++..
T Consensus       124 miHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~  198 (200)
T CHL00028        124 MIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE  198 (200)
T ss_pred             EEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence            89999998 899999999999999999999999999999999999999999999999999999999999998654

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=99.91  E-value=1.5e-24  Score=153.55  Aligned_cols=71  Identities=46%  Similarity=0.709  Sum_probs=69.6

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      |||||+++++|++.|+++++++|+++++.+.++|+++||+|.++|.++|++|+||||+||++|||||+|++
T Consensus       120 miH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       120 MIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             EEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999986

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.91  E-value=2.3e-24  Score=153.47  Aligned_cols=73  Identities=36%  Similarity=0.593  Sum_probs=71.0

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      |||||++++.|+++|+++.+++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.
T Consensus       117 miHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~  189 (197)
T PRK14512        117 LLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETR  189 (197)
T ss_pred             EEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCc
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999864

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.90  E-value=1.3e-23  Score=149.62  Aligned_cols=74  Identities=46%  Similarity=0.741  Sum_probs=71.8

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |||||+++++|+++|++.++++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.+
T Consensus       125 mih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~  198 (200)
T PRK00277        125 MIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK  198 (200)
T ss_pred             EeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998754

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.88  E-value=9.7e-23  Score=140.78  Aligned_cols=69  Identities=41%  Similarity=0.660  Sum_probs=67.7

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV   69 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I   69 (91)
                      |||||+++..|++.|+++.+++++++++.+.++|+++||++.++|.++|++++||||+||++|||||+|
T Consensus        94 ~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013          94 MIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             EEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence            799999999999999999999999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.86  E-value=1.6e-21  Score=139.60  Aligned_cols=74  Identities=36%  Similarity=0.694  Sum_probs=70.9

Q ss_pred             CCCCCC--ccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPI--GRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~--~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |||||+  +++.|++.|+++++++++++++.+.++|+++||++.++|.+++++++||||+||++|||||+|+++..
T Consensus       129 miH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~  204 (207)
T PRK12553        129 LIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYR  204 (207)
T ss_pred             hhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchh
Confidence            899999  67899999999999999999999999999999999999999999999999999999999999998754

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.86  E-value=5e-22  Score=138.03  Aligned_cols=73  Identities=32%  Similarity=0.589  Sum_probs=68.6

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      |+|+|+.++.|+++++...++.+++.++.+.++|+++||++.++|.++|+||+||||+||++|||||+|++++
T Consensus       110 m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~  182 (182)
T PF00574_consen  110 MIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIESR  182 (182)
T ss_dssp             EES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred             EeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999863

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.85  E-value=1.8e-21  Score=135.10  Aligned_cols=69  Identities=48%  Similarity=0.781  Sum_probs=67.7

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV   69 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I   69 (91)
                      |+|+|+++..|+++|++..++++.++++.+.++|+++||++.++|.++|++++||||+||++|||||+|
T Consensus       103 ~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         103 MIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            799999999999999999999999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.63  E-value=1.1e-15  Score=104.31  Aligned_cols=69  Identities=28%  Similarity=0.476  Sum_probs=66.9

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV   69 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I   69 (91)
                      |+|+|+++..|+..++....++++++++.+.+.|++++|++.+++..++.+++||+|+||+++||||+|
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016          92 MIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             EEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            579999999999999999999999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.46  E-value=1.6e-13  Score=96.27  Aligned_cols=67  Identities=24%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             CCCCCCccCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249            1 MIKQPIGRIEGQ-----ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus         1 MIHqP~~~~~G~-----a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ++|+|.++ .|+     +.|.+..+.++.++|.     |++++|++.+.++++++|++||||+||++|||||.|..+.
T Consensus        95 G~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~  166 (172)
T cd07015          95 GACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDI  166 (172)
T ss_pred             EEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCH
Confidence            46899765 366     7788999999998887     9999999999999999999999999999999999998763

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.42  E-value=3.7e-13  Score=91.36  Aligned_cols=69  Identities=32%  Similarity=0.503  Sum_probs=63.1

Q ss_pred             CCCCCCccCCcCH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249            1 MIKQPIGRIEGQA--TDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV   69 (91)
Q Consensus         1 MIHqP~~~~~G~a--~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I   69 (91)
                      |+|+|+++..|..  .+.....+.++.+.+.+.+.+++++|.+.+++.+++.++.||||+||+++||||+|
T Consensus        91 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394          91 GSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             EEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence            5799987766554  78888889999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.90  E-value=5.5e-09  Score=73.27  Aligned_cols=71  Identities=20%  Similarity=0.325  Sum_probs=55.5

Q ss_pred             CCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249            2 IKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus         2 IHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      +|.|.++..+...+.....+.+..+.. ....|++++|++.+.+.+++.+++||||+||+++||||+|.++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~  166 (187)
T cd07020          96 AAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL  166 (187)
T ss_pred             eccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence            466664433333445555666666664 58889999999999999999999999999999999999998764

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.76  E-value=2.9e-08  Score=69.75  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=50.1

Q ss_pred             CCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCC-------------cCCHHHHHHcCCcce
Q 039249            2 IKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPK-------------YFSPSEAVEYGIMDK   68 (91)
Q Consensus         2 IHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~-------------wmta~EA~eyGliD~   68 (91)
                      .|.|.....|++.+     +.+...-....+.|++++|++.+.+++++++++             |||++||+++||+|.
T Consensus        93 ~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~  167 (178)
T cd07021          93 AAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEG  167 (178)
T ss_pred             cCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEE
Confidence            46676554443322     223333344566799999999999999999995             999999999999999


Q ss_pred             eecCC
Q 039249           69 VLYTE   73 (91)
Q Consensus        69 I~~~~   73 (91)
                      |..+.
T Consensus       168 ia~~~  172 (178)
T cd07021         168 IAGSL  172 (178)
T ss_pred             EECCH
Confidence            97653

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07014 S49_SppA Signal peptide peptidase A

Probab=98.41  E-value=1.2e-06  Score=60.70  Aligned_cols=54  Identities=22%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           19 ARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        19 ~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .-..++.+.+.+.+.++++.|++.+.+.+++....||+|+||+++||||+|...
T Consensus       116 ~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~  169 (177)
T cd07014         116 DQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF  169 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence            345788889999999999999999999999999999999999999999998753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=97.94  E-value=4.9e-05  Score=54.03  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           14 TDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        14 ~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .+-...-..|+.+.+.+.+..++.-|++.++++++++...| +|++|+++||||+|...
T Consensus       138 ~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~-~~~~A~~~gLvD~i~~~  195 (207)
T TIGR00706       138 EERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVF-TGRQALKLRLVDKLGTE  195 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcc-cHHHHHHcCCCcccCCH
Confidence            34445556778888899999999999999999999988775 99999999999999653

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=97.88  E-value=5.1e-05  Score=53.70  Aligned_cols=58  Identities=16%  Similarity=0.264  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      ..+-......|+.+.+.+.+..+++-|++.+++.++.+...| +|++|+++||||+|..
T Consensus       142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~  199 (208)
T cd07023         142 EEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGG  199 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCC
Confidence            346666677889999999999999999999999999888776 7999999999999975

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=97.87  E-value=6.4e-05  Score=53.61  Aligned_cols=57  Identities=23%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      ..+-+..-+.|+.+.+.+.+.++++.|.+.+++.+.+  ...|++++|+++||||+|..
T Consensus       149 ~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~  205 (214)
T cd07022         149 DEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGT  205 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCC
Confidence            4455666677889999999999999999999999988  66689999999999999865

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=97.83  E-value=8.4e-05  Score=52.97  Aligned_cols=54  Identities=22%  Similarity=0.212  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      ......++.+.+.+.+..++..|++++++.+..+ ..+++++||+++||||+|..
T Consensus       149 ~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~  202 (211)
T cd07019         149 LGLQLSIENGYKRFITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGD  202 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCC
Confidence            3344578999999999999999999999999664 67999999999999999865

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.70  E-value=0.00015  Score=49.32  Aligned_cols=56  Identities=20%  Similarity=0.326  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      +-...-+.|+.+.+...+..++.-|.+.+++.++.+. ..|++++|+++||||+|-.
T Consensus        84 ~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~  139 (154)
T PF01343_consen   84 ERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGT  139 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCC
Confidence            3344456778888889999999999999999999887 7778999999999999854

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.57  E-value=0.0003  Score=57.25  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249           12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVL   70 (91)
Q Consensus        12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~   70 (91)
                      +..+.......++.+.+...+..++.-|++.+++..+.+...| |++||+++||||+|-
T Consensus       452 t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig  509 (584)
T TIGR00705       452 TAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALG  509 (584)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCC
Confidence            5677788888899999999999999999999999999988776 999999999999983

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=96.86  E-value=0.0067  Score=43.47  Aligned_cols=56  Identities=25%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      +-...-..++.+.+.+.+..++.-|.+.+.+.+..+ ..-+++++|++.||||+|..
T Consensus       157 ~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~  212 (222)
T cd07018         157 AREQTQALLDSLWDQYLADVAASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAY  212 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCc
Confidence            334444566778888888888888999999998887 66889999999999999864

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK10949 protease 4; Provisional

Probab=95.74  E-value=0.048  Score=45.07  Aligned_cols=56  Identities=23%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      +-...-..++...+...+.-++.-|++.+++.+..+ ..-+|+++|++.||||++-.
T Consensus       473 ~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~  528 (618)
T PRK10949        473 FQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGD  528 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCC
Confidence            334444567777888888888888999999988654 46789999999999999854

>PRK11778 putative inner membrane peptidase; Provisional

Probab=95.08  E-value=0.077  Score=40.89  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      +-...-..|+.+.+...+..+++-+  ...+.+..+.. .+++++|+++||||+|-..
T Consensus       232 ~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G~-v~~g~~Al~~GLVD~Ig~~  286 (330)
T PRK11778        232 GREKFREELEETHQLFKDFVQRYRP--QLDIDKVATGE-HWYGQQALELGLVDEIQTS  286 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHhCC-CcCHHHHHHCCCCCcCCCH
Confidence            3344455666677777777665433  23344444444 5699999999999998664

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=94.18  E-value=0.2  Score=41.09  Aligned_cols=56  Identities=5%  Similarity=-0.073  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCc-------CCHHHHHHcCCcceeecC
Q 039249           17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKY-------FSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~w-------mta~EA~eyGliD~I~~~   72 (91)
                      ...-..|+.+-..+.+..++.-+.+.+++....+.=.|       .+|++|++.||||+|...
T Consensus       207 e~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~  269 (584)
T TIGR00705       207 RNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSY  269 (584)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCH
Confidence            34445667788888888888889999999988776555       389999999999999653

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=93.87  E-value=0.033  Score=39.82  Aligned_cols=29  Identities=31%  Similarity=0.560  Sum_probs=23.8

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ...++-...++||+||+++||||+|+.++
T Consensus       153 a~~lll~g~~~~a~eA~~~Glv~~vv~~~  181 (229)
T PRK06213        153 FQRAVINAEMFDPEEAVAAGFLDEVVPPE  181 (229)
T ss_pred             HHHHHHcCcccCHHHHHHCCCceeccChH
Confidence            45566677789999999999999998643

>PRK05869 enoyl-CoA hydratase; Validated

Probab=93.34  E-value=0.07  Score=38.24  Aligned_cols=30  Identities=17%  Similarity=0.450  Sum_probs=23.8

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..+++-.-.++||+||.++||+|+|+++..
T Consensus       160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  189 (222)
T PRK05869        160 AKELVFSGRFFDAEEALALGLIDEMVAPDD  189 (222)
T ss_pred             HHHHHHcCCCcCHHHHHHCCCCCEeeCchH
Confidence            345555566999999999999999987543

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=92.84  E-value=0.41  Score=36.34  Aligned_cols=57  Identities=25%  Similarity=0.364  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      +-...-.+++...+.+.+..++..+.+.+++.. ......+++++|++.||||++-+.
T Consensus       206 ~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~-~a~g~v~~g~~A~~~gLVDelg~~  262 (317)
T COG0616         206 EREILQKEIDETYDEFVDKVAEGRGLSDEAVDK-LATGRVWTGQQALELGLVDELGGL  262 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH-HhccceecHHHhhhcCCchhcCCH
Confidence            334444688888889999999999988888544 445566689999999999998653

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=92.77  E-value=0.084  Score=38.38  Aligned_cols=29  Identities=17%  Similarity=0.228  Sum_probs=22.8

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++-....++|+||+++||||+|+.+..
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  184 (257)
T PRK05862        156 MDLCLTGRMMDAAEAERAGLVSRVVPADK  184 (257)
T ss_pred             HHHHHhCCccCHHHHHHcCCCCEeeCHhH
Confidence            44444556899999999999999987543

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=92.76  E-value=0.095  Score=38.20  Aligned_cols=29  Identities=17%  Similarity=0.246  Sum_probs=23.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -..++-.-..+||+||.++||||+|+.+.
T Consensus       155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~  183 (259)
T PRK06494        155 AMGMILTGRRVTAREGLELGFVNEVVPAG  183 (259)
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence            34555566789999999999999998754

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=92.51  E-value=0.097  Score=38.24  Aligned_cols=29  Identities=14%  Similarity=0.330  Sum_probs=23.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..+++=.-..++|+||.++||||+|+.+.
T Consensus       164 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (262)
T PRK06144        164 VKDMLFTARLLEAEEALAAGLVNEVVEDA  192 (262)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcCeecCHH
Confidence            34555566789999999999999998764

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=92.40  E-value=0.11  Score=37.76  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=24.2

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -..++-....|||+||+++||||+|+....
T Consensus       154 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~  183 (254)
T PRK08259        154 AMDLILTGRPVDADEALAIGLANRVVPKGQ  183 (254)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCCEeeChhH
Confidence            355555667899999999999999987654

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=92.19  E-value=0.16  Score=36.99  Aligned_cols=30  Identities=17%  Similarity=0.198  Sum_probs=24.3

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ...++=.-..|+|+||+++||||+|+++..
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  190 (263)
T PRK07799        161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQ  190 (263)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence            355555667899999999999999987654

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=91.87  E-value=0.15  Score=37.11  Aligned_cols=29  Identities=7%  Similarity=0.167  Sum_probs=23.1

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++=.-..|||+||.++||||+|+....
T Consensus       154 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  182 (255)
T PRK08150        154 TDMMLTGRVYDAQEGERLGLAQYLVPAGE  182 (255)
T ss_pred             HHHHHcCCcCCHHHHHHcCCccEeeCchH
Confidence            44555566799999999999999988654

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=91.73  E-value=0.13  Score=37.60  Aligned_cols=30  Identities=17%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ...++-....++|+||+++||||+|+++..
T Consensus       155 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  184 (261)
T PRK03580        155 ANEMVMTGRRMDAEEALRWGIVNRVVPQAE  184 (261)
T ss_pred             HHHHHHhCCccCHHHHHHcCCCcEecCHhH
Confidence            445555567899999999999999987543

>PRK08139 enoyl-CoA hydratase; Validated

Probab=91.71  E-value=0.17  Score=37.15  Aligned_cols=30  Identities=13%  Similarity=0.347  Sum_probs=23.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++=-...++|+||+++||||+|+.+..
T Consensus       164 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  193 (266)
T PRK08139        164 AMEMLLTGEFIDAATAREWGLVNRVVPADA  193 (266)
T ss_pred             HHHHHHcCCccCHHHHHHcCCccEeeChhH
Confidence            345555566789999999999999987543

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=91.68  E-value=0.44  Score=32.46  Aligned_cols=38  Identities=24%  Similarity=0.388  Sum_probs=27.3

Q ss_pred             HHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           33 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        33 iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .+.++.|  ......++-....++++||+++||+|+|++.
T Consensus       144 ~l~~~~g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~  181 (195)
T cd06558         144 RLPRLVG--PARARELLLTGRRISAEEALELGLVDEVVPD  181 (195)
T ss_pred             HHHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence            3444444  3334455556788899999999999999875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=91.66  E-value=0.12  Score=37.69  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=22.8

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++=-...|||+||+++||||+|+....
T Consensus       165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  193 (266)
T PRK09245        165 AEMAFTGDAIDAATALEWGLVSRVVPADQ  193 (266)
T ss_pred             HHHHHcCCCcCHHHHHHcCCcceecCHHH
Confidence            34444566899999999999999987543

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=91.64  E-value=0.13  Score=37.41  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..++-....|+|+||+++||||+|+.++
T Consensus       154 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK06563        154 MRYLLTGDEFDAQEALRLGLVQEVVPPG  181 (255)
T ss_pred             HHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence            3455555679999999999999998754

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=91.63  E-value=0.19  Score=36.63  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++=....++|+||+++||||+|+.+..
T Consensus       157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  185 (258)
T PRK09076        157 KRMILCGERVDAATALRIGLVEEVVEKGE  185 (258)
T ss_pred             HHHHHcCCcCCHHHHHHCCCCceecCchh
Confidence            44555567889999999999999987653

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=91.57  E-value=0.13  Score=37.47  Aligned_cols=30  Identities=13%  Similarity=0.114  Sum_probs=24.5

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ...+++-.-..+||+||.++||||+|+.+.
T Consensus       154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~~  183 (257)
T PRK06495        154 LTRRMMLTGYRVPAAELYRRGVIEACLPPE  183 (257)
T ss_pred             HHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence            345666667889999999999999998754

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=91.55  E-value=0.21  Score=36.39  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=23.7

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ...++=.-..++|+||+++||||+|+++.
T Consensus       160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  188 (256)
T PRK06143        160 TRWLLLTGETIDAAQALAWGLVDRVVPLA  188 (256)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence            45555566789999999999999998754

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=91.47  E-value=0.16  Score=36.72  Aligned_cols=29  Identities=17%  Similarity=0.299  Sum_probs=23.2

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++-....++|+||+++||||+|+++..
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  184 (257)
T PRK07658        156 LEMMLTSEPITGAEALKWGLVNGVFPEET  184 (257)
T ss_pred             HHHHHcCCCcCHHHHHHcCCcCeecChhH
Confidence            44555667899999999999999986543

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=91.46  E-value=0.19  Score=36.53  Aligned_cols=30  Identities=10%  Similarity=0.118  Sum_probs=23.9

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -..++-.-.-++|+||+++||||+|++++.
T Consensus       159 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  188 (260)
T PRK07511        159 ATELLLEGKPISAERLHALGVVNRLAEPGQ  188 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCccEeeCchH
Confidence            445555667899999999999999987543

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=91.35  E-value=0.13  Score=37.73  Aligned_cols=30  Identities=13%  Similarity=0.068  Sum_probs=23.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -..++-.-..|||+||+++||||+|+.+..
T Consensus       167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  196 (268)
T PRK07327        167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDE  196 (268)
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence            444555666899999999999999986543

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=91.19  E-value=0.15  Score=37.10  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..++--...++|+||+++||||+|+.+.
T Consensus       162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~  189 (260)
T PRK05980        162 LELLLTGDAFSAERALEIGLVNAVVPHE  189 (260)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence            4455556789999999999999998754

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=91.07  E-value=0.15  Score=36.94  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=24.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..+++=....+||+||+++||||+|+++..
T Consensus       159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~  188 (255)
T PRK07260        159 ATHLAMTGEALTAEKALEYGFVYRVAESEK  188 (255)
T ss_pred             HHHHHHhCCccCHHHHHHcCCcceecCHhH
Confidence            455666678999999999999999986543

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=90.87  E-value=0.23  Score=36.05  Aligned_cols=30  Identities=10%  Similarity=0.131  Sum_probs=23.7

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -..++=...-++|+||.++||||+|+.+..
T Consensus       152 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  181 (254)
T PRK08252        152 AMELALTGDMLTAERAHELGLVNRLTEPGQ  181 (254)
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceecCcch
Confidence            455555566799999999999999987543

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=90.81  E-value=0.16  Score=37.84  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=23.2

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -..++=.-..++|+||.++||||+|+.+.
T Consensus       177 A~~llltG~~i~A~eA~~~GLV~~vv~~~  205 (288)
T PRK08290        177 AKELLFTGDRLTADEAHRLGMVNRVVPRD  205 (288)
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence            34455566789999999999999998754

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=90.77  E-value=0.15  Score=36.92  Aligned_cols=28  Identities=29%  Similarity=0.211  Sum_probs=21.9

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..++---..++|+||.++||||+|++.+
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~  186 (251)
T PRK06023        159 FALLALGEGFSAEAAQEAGLIWKIVDEE  186 (251)
T ss_pred             HHHHHhCCCCCHHHHHHcCCcceeeCHH
Confidence            3344455679999999999999998654

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=90.59  E-value=0.15  Score=37.31  Aligned_cols=29  Identities=17%  Similarity=0.289  Sum_probs=23.0

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++=.-..++|+||+++||||+|++++
T Consensus       157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~  185 (261)
T PRK11423        157 VKEMFFTASPITAQRALAVGILNHVVEVE  185 (261)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence            34455556789999999999999998654

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=90.57  E-value=0.21  Score=36.28  Aligned_cols=30  Identities=13%  Similarity=0.183  Sum_probs=23.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -..++-.-.-|+|+||.++||||+|+.++.
T Consensus       153 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  182 (255)
T PRK09674        153 ASQMVLTGESITAQQAQQAGLVSEVFPPEL  182 (255)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence            345555566799999999999999986543

>PLN02600 enoyl-CoA hydratase

Probab=90.51  E-value=0.22  Score=36.18  Aligned_cols=29  Identities=14%  Similarity=0.180  Sum_probs=23.1

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++=.-..++|+||.++||||+|+.+..
T Consensus       150 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  178 (251)
T PLN02600        150 KELIFTGRRIGAREAASMGLVNYCVPAGE  178 (251)
T ss_pred             HHHHHhCCccCHHHHHHcCCCcEeeChhH
Confidence            44555566899999999999999987543

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=90.48  E-value=0.11  Score=37.83  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=22.4

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVL   70 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~   70 (91)
                      ....++-.-..|+|+||+++||||+|+
T Consensus       158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv  184 (260)
T PRK07659        158 KAKQIIWEGKKLSATEALDLGLIDEVI  184 (260)
T ss_pred             HHHHHHHhCCccCHHHHHHcCChHHHh
Confidence            345566666789999999999999998

>PLN02921 naphthoate synthase

Probab=90.41  E-value=0.18  Score=38.50  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=23.8

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-.-..|+|+||.++||||+|+....
T Consensus       222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~  251 (327)
T PLN02921        222 AREMWFLARFYTASEALKMGLVNTVVPLDE  251 (327)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEEeCHHH
Confidence            345555667899999999999999987543

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=90.17  E-value=0.22  Score=36.49  Aligned_cols=30  Identities=10%  Similarity=0.257  Sum_probs=23.5

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .-.+++-.-..++|+||+++||||+|+.+.
T Consensus       154 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  183 (258)
T PRK06190        154 RARRMSLTGDFLDAADALRAGLVTEVVPHD  183 (258)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCCeEecCHh
Confidence            344555566689999999999999998654

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=89.80  E-value=0.42  Score=34.83  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=23.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-...-+||+||+++||||+|+.+..
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  188 (261)
T PRK08138        159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQ  188 (261)
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence            344555556799999999999999986543

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=89.74  E-value=0.36  Score=35.03  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++=.-..++|+||+++||||+|+.+.
T Consensus       152 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  180 (249)
T PRK07938        152 MRALFFTAATITAAELHHFGSVEEVVPRD  180 (249)
T ss_pred             HHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence            45555566789999999999999998754

>PLN02888 enoyl-CoA hydratase

Probab=89.65  E-value=0.4  Score=35.16  Aligned_cols=29  Identities=10%  Similarity=0.158  Sum_probs=22.6

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -..++=.-..++|+||+++||||+|+.+.
T Consensus       160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  188 (265)
T PLN02888        160 AREVSLTAMPLTAETAERWGLVNHVVEES  188 (265)
T ss_pred             HHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence            34444455688999999999999998654

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=89.56  E-value=0.36  Score=35.52  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=23.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..+++-.-..|+|+||+++||||+|+.+.
T Consensus       168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~  196 (273)
T PRK07396        168 AREIWFLCRQYDAQEALDMGLVNTVVPLA  196 (273)
T ss_pred             HHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence            44555556689999999999999998753

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=89.56  E-value=0.17  Score=36.24  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=21.9

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .++=.-.-++|+||+++||||+|+++..
T Consensus       153 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~  180 (245)
T PF00378_consen  153 ELLLTGEPISAEEALELGLVDEVVPDEE  180 (245)
T ss_dssp             HHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred             ccccccccchhHHHHhhcceeEEcCchh
Confidence            3333445789999999999999988665

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=89.45  E-value=0.37  Score=34.94  Aligned_cols=30  Identities=17%  Similarity=0.195  Sum_probs=24.3

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..+++-.-.-++|+||+++||||+|++++.
T Consensus       155 a~~llltg~~~~a~eA~~~Glv~~vv~~~~  184 (249)
T PRK07110        155 GQEMLLTARYYRGAELKKRGVPFPVLPRAE  184 (249)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCeEEeChHH
Confidence            455666677899999999999999987543

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=89.43  E-value=0.3  Score=35.52  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=22.2

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++-.-.-++|+||+++||||+|+.+..
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  187 (260)
T PRK07657        159 KELIYTGRRISAQEAKEIGLVEFVVPAHL  187 (260)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCCeecCHHH
Confidence            34444455699999999999999987544

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=89.25  E-value=0.27  Score=35.59  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .++--...++|+||+++||||+|+++.
T Consensus       159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~  185 (259)
T PRK06688        159 EMLLLGEPLSAEEALRIGLVNRVVPAA  185 (259)
T ss_pred             HHHHhCCccCHHHHHHcCCcceecCHH
Confidence            334345579999999999999998753

>PRK08788 enoyl-CoA hydratase; Validated

Probab=89.19  E-value=0.51  Score=35.36  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=23.7

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..+++-...-|+|+||.++||||+|+++.
T Consensus       182 A~ellltG~~l~A~eA~~~GLV~~vv~~~  210 (287)
T PRK08788        182 AEELILSGKLYTAEELHDMGLVDVLVEDG  210 (287)
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence            45556667789999999999999998754

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=89.12  E-value=0.47  Score=34.49  Aligned_cols=28  Identities=11%  Similarity=0.087  Sum_probs=22.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      ...++-...-++|+||+++||||+|+.+
T Consensus       156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~  183 (255)
T PRK07112        156 AHYMTLMTQPVTAQQAFSWGLVDAYGAN  183 (255)
T ss_pred             HHHHHHhCCcccHHHHHHcCCCceecCc
Confidence            3445555567999999999999999764

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=88.88  E-value=0.5  Score=34.79  Aligned_cols=29  Identities=14%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++=.-..++|+||+++||||+|+.+.
T Consensus       175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  203 (277)
T PRK08258        175 ASELLYTGRSMSAEEGERWGFFNRLVEPE  203 (277)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence            34455556789999999999999998653

>PRK10949 protease 4; Provisional

Probab=88.86  E-value=2.6  Score=35.02  Aligned_cols=52  Identities=13%  Similarity=0.085  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC-------CCcCCHHHHHHcCCcceeecC
Q 039249           21 KEIKNVKAELVKLYAKHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        21 ~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~r-------d~wmta~EA~eyGliD~I~~~   72 (91)
                      ..|+.+-+.+.+..++.=+.+.+.+....++       -.-++|++|++.||||+|...
T Consensus       230 ~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~  288 (618)
T PRK10949        230 RWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASS  288 (618)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCH
Confidence            4567777788888888888999998643332       123699999999999999654

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=88.81  E-value=0.25  Score=35.90  Aligned_cols=28  Identities=25%  Similarity=0.294  Sum_probs=22.7

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      ....++-....++|+||.++||||+|++
T Consensus       162 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~  189 (262)
T PRK07509        162 VARELTYTARVFSAEEALELGLVTHVSD  189 (262)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence            3455555667899999999999999974

>PRK08321 naphthoate synthase; Validated

Probab=88.64  E-value=0.33  Score=36.32  Aligned_cols=30  Identities=17%  Similarity=0.192  Sum_probs=24.0

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -..++=.-.-|+|+||.++||||+|+++..
T Consensus       197 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~  226 (302)
T PRK08321        197 AREIFFLGRTYSAEEAHDMGAVNAVVPHAE  226 (302)
T ss_pred             HHHHHHcCCccCHHHHHHCCCceEeeCHHH
Confidence            345555667899999999999999987543

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=88.55  E-value=0.31  Score=35.50  Aligned_cols=29  Identities=10%  Similarity=0.204  Sum_probs=22.7

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++=.-.-|||+||.++||||+|++...
T Consensus       165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  193 (266)
T PRK05981        165 MELSLLGEKLPAETALQWGLVNRVVDDAE  193 (266)
T ss_pred             HHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence            44444556799999999999999987543

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=88.35  E-value=0.57  Score=34.31  Aligned_cols=29  Identities=17%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..+++-.-..++|+||.++||||+|++..
T Consensus       167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  195 (269)
T PRK06127        167 AKDLFYTARRFDAAEALRIGLVHRVTAAD  195 (269)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence            35555566789999999999999998644

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=88.22  E-value=0.33  Score=35.35  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=21.2

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .++---.-++|+||.++||||+|+...
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~  183 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHD  183 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHH
Confidence            334345679999999999999998754

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=88.17  E-value=0.55  Score=34.13  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-.-.-++|+||+++||||+|+.+.
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (262)
T PRK05995        159 ARRYFLTAERFDAAEALRLGLVHEVVPAE  187 (262)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCCeecCHH
Confidence            34455455668999999999999998643

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=88.17  E-value=0.66  Score=33.74  Aligned_cols=36  Identities=14%  Similarity=0.244  Sum_probs=25.4

Q ss_pred             HHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           35 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        35 a~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .++.|.+  ....++=.-.-++|+||+++||||+|+++
T Consensus       141 ~~~vg~~--~a~~l~ltg~~~~a~eA~~~Glv~~v~~~  176 (251)
T TIGR03189       141 PERMGRV--AAEDLLYSGRSIDGAEGARIGLANAVAED  176 (251)
T ss_pred             HHHhCHH--HHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence            3444433  34555555556999999999999999853

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=88.02  E-value=0.71  Score=33.93  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=21.8

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .+++=....++|+||+++||||+|+.+
T Consensus       173 ~~l~ltg~~~~a~eA~~~GLv~~vv~~  199 (275)
T PLN02664        173 MELALTGRRFSGSEAKELGLVSRVFGS  199 (275)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence            344445678999999999999999874

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=88.00  E-value=0.83  Score=33.81  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=23.8

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .-.+++-...-|+|+||.++||||+|+...
T Consensus       168 ~a~~llltg~~~~a~eA~~~Glv~~vv~~~  197 (278)
T PLN03214        168 VAESLLLRGRLVRPAEAKQLGLIDEVVPAA  197 (278)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence            345566666779999999999999998653

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=87.65  E-value=0.69  Score=33.59  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=22.8

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++-.-.-++|+||.++||||+|+....
T Consensus       161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  189 (262)
T PRK08140        161 LGLALLGEKLSAEQAEQWGLIWRVVDDAA  189 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCccEeeChHH
Confidence            44555566799999999999999987543

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=87.62  E-value=0.66  Score=33.88  Aligned_cols=30  Identities=17%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ...+++=...-++|+||+++||||+|+.+.
T Consensus       168 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  197 (272)
T PRK06210        168 NALDLLLSARTFYAEEALRLGLVNRVVPPD  197 (272)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence            345555566778999999999999998653

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=87.57  E-value=0.56  Score=33.94  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .++-.-..|+|+||.++||||+|+.+
T Consensus       159 ~llltG~~~~a~eA~~~Glv~~vv~~  184 (239)
T PLN02267        159 DVLLRAAKLTAEEAVEMGIVDSAHDS  184 (239)
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCC
Confidence            45556678999999999999999864

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=87.45  E-value=0.56  Score=35.09  Aligned_cols=31  Identities=10%  Similarity=0.120  Sum_probs=25.3

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..-.+++=-...++|+||.++||||+|+.+.
T Consensus       168 ~~A~~llltg~~i~A~eA~~~GLV~~vv~~~  198 (298)
T PRK12478        168 AKVKWHSLTGRPLTGVQAAEAELINEAVPFE  198 (298)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence            3445666677899999999999999998754

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=87.24  E-value=0.75  Score=33.37  Aligned_cols=28  Identities=11%  Similarity=0.088  Sum_probs=22.1

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..++-.-.-++|+||.++||||+|+.++
T Consensus       155 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~  182 (256)
T TIGR02280       155 MGLAMLGEKLDARTAASWGLIWQVVDDA  182 (256)
T ss_pred             HHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence            3344455679999999999999998754

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=87.17  E-value=0.61  Score=33.85  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=22.6

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -..++-....++|+||.++||||+|+.+.
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  186 (260)
T PRK05809        158 AKELIYTGDMINAEEALRIGLVNKVVEPE  186 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCcccChH
Confidence            34455555678999999999999998654

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=86.98  E-value=0.22  Score=36.04  Aligned_cols=27  Identities=22%  Similarity=0.129  Sum_probs=22.1

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVL   70 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~   70 (91)
                      ....++=-...++|+||+++||||+|+
T Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv  181 (249)
T PRK05870        155 VARAALLFGMRFDAEAAVRHGLALMVA  181 (249)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence            345555566789999999999999997

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=86.89  E-value=0.64  Score=33.88  Aligned_cols=28  Identities=11%  Similarity=0.191  Sum_probs=22.2

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..++-.-.-+||+||.++||||+|+.+.
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~  186 (259)
T TIGR01929       159 REIWFLCRQYDAEQALDMGLVNTVVPLA  186 (259)
T ss_pred             HHHHHhCCccCHHHHHHcCCcccccCHH
Confidence            4454455679999999999999998754

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=86.88  E-value=0.76  Score=33.78  Aligned_cols=27  Identities=15%  Similarity=0.181  Sum_probs=20.5

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .++=--.-++|+||+++||||+|+.+.
T Consensus       173 ~l~l~g~~~~a~eA~~~Glv~~vv~~~  199 (276)
T PRK05864        173 EIMLTGRDVDAEEAERIGLVSRQVPDE  199 (276)
T ss_pred             HHHHcCCccCHHHHHHcCCcceeeCHH
Confidence            333334458999999999999998654

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=86.75  E-value=0.7  Score=34.38  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .+++-.-..++|+||+++||||+|+...
T Consensus       175 ~~llltg~~~~a~eA~~~GLv~~vv~~~  202 (296)
T PRK08260        175 LEWVYSGRVFDAQEALDGGLVRSVHPPD  202 (296)
T ss_pred             HHHHHcCCccCHHHHHHCCCceeecCHH
Confidence            4455555679999999999999998653

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=86.63  E-value=0.68  Score=34.12  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..++=--..|+|+||+++||||+|+.++.
T Consensus       166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~  194 (275)
T PRK09120        166 LYYIMTGETFTGRKAAEMGLVNESVPLAQ  194 (275)
T ss_pred             HHHHhcCCccCHHHHHHcCCcceecCHHH
Confidence            34444456799999999999999987543

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=86.48  E-value=0.98  Score=33.04  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=21.6

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      ..++=--.-++|+||.++||||+|+.+
T Consensus       171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~  197 (272)
T PRK06142        171 RELALTGRDIDAAEAEKIGLVNRVYDD  197 (272)
T ss_pred             HHHHHhCCCcCHHHHHHcCCccEecCC
Confidence            444445566999999999999999875

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=85.82  E-value=0.96  Score=33.10  Aligned_cols=28  Identities=14%  Similarity=0.159  Sum_probs=21.6

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..++=...-|||+||+++||||+|+...
T Consensus       162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~  189 (265)
T PRK05674        162 RRYALTAERFDGRRARELGLLAESYPAA  189 (265)
T ss_pred             HHHHHhCcccCHHHHHHCCCcceecCHH
Confidence            3444445568999999999999998753

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=84.94  E-value=1.1  Score=33.50  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=23.3

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++=--..++|+||.++||||+|+.+.
T Consensus       185 A~~llltG~~i~a~eA~~~GLv~~vv~~~  213 (302)
T PRK08272        185 AKRLLFTGDCITGAQAAEWGLAVEAVPPE  213 (302)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence            34555566789999999999999998643

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=84.83  E-value=1.1  Score=33.41  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=22.5

Q ss_pred             cCCHHHHHHcCCcceeecCCCCCCCchhHhHhHh
Q 039249           54 YFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKK   87 (91)
Q Consensus        54 wmta~EA~eyGliD~I~~~~~~~~~~~~~~~~~~   87 (91)
                      =+||.++.+.|+||+|+++.. ......++.|++
T Consensus       196 ~~~a~~l~~~g~iD~ii~e~~-~~~~~~~~~~~~  228 (256)
T PRK12319        196 KITAGELLEMGVVDKVIPEHG-YFSSEIIDMIKK  228 (256)
T ss_pred             CCCHHHHHHCCCCcEecCCCC-CCHHHHHHHHHH
Confidence            349999999999999998752 122234444443

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=84.78  E-value=1  Score=32.81  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=24.0

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ....++=.-.=++|+||.++||||+|+...
T Consensus       159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~  188 (262)
T PRK07468        159 NARRVFMSARLFDAEEAVRLGLLSRVVPAE  188 (262)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence            345566666789999999999999998754

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=84.66  E-value=0.41  Score=34.82  Aligned_cols=26  Identities=15%  Similarity=0.160  Sum_probs=20.1

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      ..++=.-..+||+||+++||||+|.+
T Consensus       162 ~~l~l~g~~~~a~eA~~~Glv~~v~~  187 (260)
T PRK07827        162 ARYYLTGEKFGAAEAARIGLVTAAAD  187 (260)
T ss_pred             HHHHHhCCccCHHHHHHcCCcccchH
Confidence            34444556789999999999999853

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=84.51  E-value=0.59  Score=35.57  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=26.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-.-..++|+||++.|||++|+....
T Consensus       188 Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~  217 (290)
T KOG1680|consen  188 ALEMILTGRRLGAQEAKKIGLVNKVVPSGD  217 (290)
T ss_pred             HHHHHHhcCcccHHHHHhCCceeEeecchh
Confidence            456777888999999999999999998766

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=83.46  E-value=1.3  Score=31.96  Aligned_cols=26  Identities=12%  Similarity=0.233  Sum_probs=21.6

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceee
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVL   70 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~   70 (91)
                      -.+++=....+||+||.++||||+|.
T Consensus       147 a~~l~ltg~~~~a~eA~~~Glv~~v~  172 (243)
T PRK07854        147 ARAMLLGAEKLTAEQALATGMANRIG  172 (243)
T ss_pred             HHHHHHcCCCcCHHHHHHCCCccccc
Confidence            44566566789999999999999994

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=82.56  E-value=1  Score=32.67  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=21.3

Q ss_pred             hhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           48 DIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        48 ~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ++=-..-++|+||+++||||+|+...
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~  187 (257)
T COG1024         162 LLLTGEPISAAEALELGLVDEVVPDA  187 (257)
T ss_pred             HHHcCCcCCHHHHHHcCCcCeeeCCH
Confidence            44556678999999999999988753

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=82.49  E-value=1.8  Score=33.92  Aligned_cols=25  Identities=24%  Similarity=0.184  Sum_probs=21.1

Q ss_pred             CCCcCCHHHHHHcCCcceeecCCCC
Q 039249           51 RPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus        51 rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      --..++|+||.++||||+|+++.+.
T Consensus       191 tGe~~sA~EA~~~GLVd~VVp~~~~  215 (360)
T TIGR03200       191 LCEPWSAHKAKRLGIIMDVVPALKV  215 (360)
T ss_pred             hCCcCcHHHHHHcCChheecCchhc
Confidence            3458999999999999999887653

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=82.36  E-value=1.7  Score=35.62  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=28.2

Q ss_pred             HHHhh-CCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           34 YAKHF-GKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        34 Ya~~T-G~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      +.++. |.+...-.+++-....++|+||.++|||++|+++..
T Consensus       426 L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~  467 (546)
T TIGR03222       426 LATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDID  467 (546)
T ss_pred             HHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchH
Confidence            34454 655543333444566799999999999999977543

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=80.37  E-value=1.8  Score=35.42  Aligned_cols=26  Identities=15%  Similarity=0.164  Sum_probs=21.0

Q ss_pred             hhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           48 DIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        48 ~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ++=....|+|+||+++||||+|+.++
T Consensus       192 llltG~~i~AeeA~~~GLVd~vv~~d  217 (550)
T PRK08184        192 FCTIEEGVRGKRAVDWRLVDEVVKPS  217 (550)
T ss_pred             HHHhCCcccHHHHHHcCCccEeeCHH
Confidence            33345589999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		2e-14
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		2e-14
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		2e-14
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		2e-14
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		3e-13
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		1e-11
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		1e-11
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		3e-11
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		4e-11
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		8e-11
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		8e-11
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		8e-11
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		3e-10
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		3e-10
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		3e-10
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		7e-10
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		8e-10
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		8e-10
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		1e-08
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		2e-07
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		2e-06
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		2e-06

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 120 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 179
Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 180 VEYGLVDSIL 189

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 120 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 179
Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 180 VEYGLVDSIL 189

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 120 MIHQPLGGYQGQATDIEIHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 179
Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 180 VEYGLVDSIL 189

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 47/70 (67%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235
Query: 61  VEYGIMDKVL 70
            E+GI+DKVL
Sbjct: 236 QEFGILDKVL 245

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQA+D+EI   EI  +K  +  + A++ G++ EQI  D  R  Y S  EA
Sbjct: 122 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 181
Query: 61  VEYGIMDKVL 70
            EYG++DKVL
Sbjct: 182 KEYGLIDKVL 191

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQA+D+EI   EI  +K  +  + A++ G++ EQI  D  R  Y S  EA
Sbjct: 122 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 181
Query: 61  VEYGIMDKVL 70
            EYG++DKVL
Sbjct: 182 KEYGLIDKVL 191

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA K I  ++ +L K+ A+  G+  E IE D  R  + S  EA
Sbjct: 120 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 179
Query: 61  VEYGIMDKVL-YTEKSPEDH 79
           +EYG++DK+L +TE     H
Sbjct: 180 LEYGLIDKILTHTEDKKHHH 199

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 2   IKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61
           I Q +G  +GQ TD++I  K+ + V  +L ++ AKH GK  E++E D  R  + +P EAV
Sbjct: 123 IHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAV 182
Query: 62  EYGIMDKVL 70
           EYG++D + 
Sbjct: 183 EYGLIDSIF 191

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA K I  ++ +L K+ A+  G+  E IE D  R  + S  EA
Sbjct: 120 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 179
Query: 61  VEYGIMDKVL 70
           +EYG++DK+L
Sbjct: 180 LEYGLIDKIL 189

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA K I  ++ +L K+ A+  G+  E IE D  R  + S  EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180
Query: 61  VEYGIMDKVL 70
           +EYG++DK+L
Sbjct: 181 LEYGLIDKIL 190

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA K I  ++ +L K+ A+  G+  E IE D  R  + S  EA
Sbjct: 120 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 179
Query: 61  VEYGIMDKVL 70
           +EYG++DK+L
Sbjct: 180 LEYGLIDKIL 189

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           ++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA
Sbjct: 122 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEA 181
Query: 61  VEYGIMDKVL 70
           +EYG +D ++
Sbjct: 182 LEYGFVDHII 191

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           ++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA
Sbjct: 121 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEA 180
Query: 61  VEYGIMDKVL 70
           +EYG +D ++
Sbjct: 181 LEYGFVDHII 190

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           ++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA
Sbjct: 121 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEA 180
Query: 61  VEYGIMDKVL 70
           +EYG +D ++
Sbjct: 181 LEYGFVDHII 190

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA   I   + +L ++ ++  G++ E+I+ D  R  + +  EA
Sbjct: 123 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 182
Query: 61  VEYGIMDKVLYTE 73
            EYG++D+V+  E
Sbjct: 183 KEYGLIDEVMVPE 195

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA   I   + +L ++ ++  G++ E+I+ D  R  + +  EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180
Query: 61  VEYGIMDKVLYTE 73
            EYG++D+V+  E
Sbjct: 181 KEYGLIDEVMVPE 193

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA   I   + +L ++ ++  G++ E+I+ D  R  + +  EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180
Query: 61  VEYGIMDKVLYTE 73
            EYG++D+V+  E
Sbjct: 181 KEYGLIDEVMVPE 193

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 2   IKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61
           I QP+G   GQA+D+EI  K I  +K  L K+ A H G+  E I  D  R  +    EA 
Sbjct: 125 IHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAK 184
Query: 62  EYGIMDKVL 70
            YG++D V+
Sbjct: 185 AYGLIDHVI 193

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G   G   D+EI  KEI  +K  L    +    +T E IE D  R  Y +  EA
Sbjct: 132 MIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEA 191
Query: 61  VEYGIMDKVLYTE 73
            +YGI+D+V+ T+
Sbjct: 192 KQYGIIDEVIETK 204

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 11  GQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVL 70
            QAT++EI  KEI N K +++++ +K+  K    I   + R KYF+  EAV++ ++D +L
Sbjct: 157 NQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHIL 216

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 11  GQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVL 70
            QAT++EI  KEI N K +++++ +K+  K    I   + R KYF+  EAV++ ++D +L
Sbjct: 143 NQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHIL 202
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	9e-26
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	1e-25
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	1e-25
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	2e-25
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	2e-25
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	8e-25
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	2e-23
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	4e-08
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score = 93.4 bits (233), Expect = 9e-26
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G   GQA+D+EI  K I  +K  L K+ A H G+  E I  D  R  +    EA
Sbjct: 124 MIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEA 183

Query: 61  VEYGIMDKVLYTEKSPE 77
             YG++D V+ + ++  
Sbjct: 184 KAYGLIDHVIESREAII 200

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score = 93.4 bits (233), Expect = 1e-25
 Identities = 27/78 (34%), Positives = 47/78 (60%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQAT++EIA   I   + +L ++ ++  G++ E+I+ D  R  + +  EA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180

Query: 61  VEYGIMDKVLYTEKSPED 78
            EYG++D+V+  E     
Sbjct: 181 KEYGLIDEVMVPETKWSH 198

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score = 93.4 bits (233), Expect = 1e-25
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           ++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA
Sbjct: 121 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEA 180

Query: 61  VEYGIMDKVLYTEKSPED 78
           +EYG +D ++       +
Sbjct: 181 LEYGFVDHIITRAHVNGE 198

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score = 92.6 bits (231), Expect = 2e-25
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 120 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 179

Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 180 VEYGLVDSIL 189

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score = 93.1 bits (232), Expect = 2e-25
 Identities = 29/78 (37%), Positives = 40/78 (51%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G   G   D+EI  KEI  +K  L    +    +T E IE D  R  Y +  EA
Sbjct: 132 MIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEA 191

Query: 61  VEYGIMDKVLYTEKSPED 78
            +YGI+D+V+ T+     
Sbjct: 192 KQYGIIDEVIETKLPHPY 209

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score = 92.9 bits (231), Expect = 8e-25
 Identities = 35/87 (40%), Positives = 50/87 (57%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query: 61  VEYGIMDKVLYTEKSPEDHGVVSDLKK 87
            E+GI+DKVL       +       K+
Sbjct: 236 QEFGILDKVLVHPPQDGEDEPTLVQKE 262

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score = 87.7 bits (218), Expect = 2e-23
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 1   MIKQPIGRIEG--QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 58
           MI QP+G   G  Q TD+ IA + +   +  L K+ A++ G++ E++ AD  R  + S  
Sbjct: 139 MIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQ 198

Query: 59  EAVEYGIMDKVLYTEKSP 76
           E +EYG +D+++      
Sbjct: 199 ETLEYGFIDEIMANNSLN 216

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 4   QPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63
           +PI       + +E          A + K  A+  G+     E  I +    +P EA++Y
Sbjct: 107 RPILGYSQNGSIIEAPPAITNYFIAYI-KSLAQESGRNATIAEEFITKDLSLTPEEALKY 165

Query: 64  GIMDKV 69
           G+++ V
Sbjct: 166 GVIEVV 171

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.7 bits (81), Expect = 5e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 20 RKEIKNVKAELVKLYAKHFGKTPE-QIEADI 49
          ++ +K ++A L KLYA      P   I+A +
Sbjct: 19 KQALKKLQASL-KLYAD--DSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	99.94
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	99.9
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	99.9
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	99.84
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	99.82
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	99.82
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.77
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.76
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.26
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.75
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	97.92
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.4
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	91.55
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	91.23
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	91.18
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	90.5
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	90.06
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	90.06
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	90.03
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	89.88
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	89.71
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	89.35
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	89.18
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	89.03
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	88.98
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	88.93
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	88.68
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	88.29
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	88.29
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	88.15
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	88.04
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	87.98
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	87.91
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	87.83
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	87.77
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	87.76
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	87.6
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	87.59
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	87.59
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	87.53
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	87.38
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	87.35
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	87.27
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	87.26
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	87.2
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	87.18
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	87.07
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	87.05
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	87.03
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	86.99
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	86.95
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	86.9
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	86.76
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	86.68
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	86.62
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	86.58
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	86.44
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	86.44
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	86.34
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	86.3
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	86.23
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	86.2
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	86.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	86.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	85.75
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	85.7
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	85.66
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	85.62
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	85.51
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	85.38
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	85.36
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	85.32
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	85.1
3ksx_A	324	Nitrate transport protein; SSUA, alkanesulfonate-b	84.56
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	84.35
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	84.23
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	84.18
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	83.99
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	82.96
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	82.44
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	82.35
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	81.12
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	80.93

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=99.94  E-value=1.8e-27  Score=169.66  Aligned_cols=72  Identities=33%  Similarity=0.528  Sum_probs=70.6

Q ss_pred             CCCCCCccC-CcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249            1 MIKQPIGRI-EGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus         1 MIHqP~~~~-~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      |||||++++ .|+++|+++++++|+++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++
T Consensus       132 MIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          132 CLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             EECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred             EEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence            899999998 999999999999999999999999999999999999999999999999999999999999875

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=99.90  E-value=1.8e-24  Score=153.52  Aligned_cols=75  Identities=36%  Similarity=0.673  Sum_probs=72.3

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      |||||++++.|+++|+++.+++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+.+...
T Consensus       121 miHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~~~  195 (203)
T 3qwd_A          121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK  195 (203)
T ss_dssp             ECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCCC-
T ss_pred             EEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCCccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988753

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=99.90  E-value=2.8e-24  Score=152.38  Aligned_cols=74  Identities=39%  Similarity=0.650  Sum_probs=71.8

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |||||++++.|+++|+++.+++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+.+..
T Consensus       124 miH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~  197 (201)
T 3p2l_A          124 MIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESRE  197 (201)
T ss_dssp             EECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSC
T ss_pred             EEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCCHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998754

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=99.84  E-value=4.2e-21  Score=141.93  Aligned_cols=75  Identities=45%  Similarity=0.717  Sum_probs=72.0

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      |||||++++.|+++|+.+.+++++++++.+.++|+++||++.++|.++++||+||||+||++|||||+|+.+...
T Consensus       176 mihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~  250 (277)
T 1tg6_A          176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQ  250 (277)
T ss_dssp             EECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC-
T ss_pred             EEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCcchh
Confidence            799999999999999999999999999999999999999999999999999999999999999999999987654

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=99.82  E-value=2.1e-20  Score=133.37  Aligned_cols=74  Identities=39%  Similarity=0.555  Sum_probs=63.6

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |+|||+++..|++.|+...++++.++++.+.++|+++||++.++|.+++++++||||+||++|||||+|..+..
T Consensus       132 ~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~~  205 (215)
T 2f6i_A          132 MIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL  205 (215)
T ss_dssp             ESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCSS
T ss_pred             EEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998754

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=99.82  E-value=1.3e-20  Score=131.76  Aligned_cols=73  Identities=48%  Similarity=0.761  Sum_probs=70.5

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      |+|||+++..|+++|+...+++++++++.+.++|+++||++.++|.+++++++||||+||++|||||+|+.+.
T Consensus       120 ~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~~  192 (193)
T 1yg6_A          120 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR  192 (193)
T ss_dssp             EECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             EEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecCCC
Confidence            7899999889999999999999999999999999999999999999999999999999999999999998764

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.77  E-value=3.2e-19  Score=126.18  Aligned_cols=74  Identities=34%  Similarity=0.680  Sum_probs=60.9

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |+|||+++..|++.|+...+++++++++.+.++|+++||++.++|.+++++++||||+||++|||||+|.....
T Consensus       121 gih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~  194 (208)
T 2cby_A          121 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH  194 (208)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC-
T ss_pred             EEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999987654

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.76  E-value=6.6e-19  Score=125.53  Aligned_cols=74  Identities=32%  Similarity=0.592  Sum_probs=59.2

Q ss_pred             CCCCCCccC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRI--EGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~--~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |+|||++++  .|+++|+.+.+++++++++.+.++|++++|++.+++.+++++++||||+||++|||||+|..+.+
T Consensus       139 gih~p~~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          139 MIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             ECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             EEecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence            689999888  89999999999999999999999999999999999999999999999999999999999987654

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.26  E-value=1.9e-12  Score=93.14  Aligned_cols=69  Identities=22%  Similarity=0.290  Sum_probs=53.5

Q ss_pred             CCCCCCc--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249            1 MIKQPIG--RIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus         1 MIHqP~~--~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      |+|+|..  +..|+++++  ..+.+...+. ..+.|++++|++.+.+.+++++++||||+||++|||||+|+.+
T Consensus       104 g~~~p~~~~~~~G~~~~~--~~k~~~~~~~-~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          104 GACRPILGYSQNGSIIEA--PPAITNYFIA-YIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             ECCCEEEEECTTSCEEEC--CHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             EeccceecCCCCCCchHH--HHHHHHHHHH-HHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            4688874  456764322  2334444444 4578999999999999999999999999999999999999764

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.75  E-value=1e-08  Score=81.60  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC-------CCcCCHHHHHHcCCcceeecC
Q 039249           17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~r-------d~wmta~EA~eyGliD~I~~~   72 (91)
                      ....+.|+.+.+.+.+.+++++|++.++|.+++++       ++||||+||+++||||+|...
T Consensus       201 e~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~  263 (593)
T 3bf0_A          201 EADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASS  263 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCH
Confidence            45556778888888899999999999999999998       999999999999999999753

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=97.92  E-value=3.4e-05  Score=54.89  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      ..+-......++.+.+.+.+.+++..|.+.+++..+++...| ++++|+++||||+|..
T Consensus       155 ~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~-~a~~A~~~GLVD~i~~  212 (240)
T 3rst_A          155 KEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVY-DGRQAKKLNLVDELGF  212 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEE-EHHHHHHTTSSSEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcc-cHHHHHHcCCCcccCC
Confidence            445566667889999999999999999999999998887765 9999999999999964

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.40  E-value=0.00037  Score=55.37  Aligned_cols=59  Identities=20%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      +..+.....+.++.....+.+.+++..|++.+.+..++...+| ||+||+++||||+|..
T Consensus       445 t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~-ta~eA~~~GLVD~v~~  503 (593)
T 3bf0_A          445 PPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVDSLGD  503 (593)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEE-EHHHHHHHTSCSEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCc-CHHHHHHCCCCcCccC
Confidence            4455566667778888889999999999999999988887765 9999999999999964

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=91.55  E-value=0.2  Score=34.92  Aligned_cols=32  Identities=25%  Similarity=0.488  Sum_probs=25.7

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..-.+++-....++|+||.++||||+|++.+.
T Consensus       154 ~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~  185 (232)
T 3ot6_A          154 SAFNRSVINAEMFDPEGAMAAGFLDKVVSVEE  185 (232)
T ss_dssp             HHHHHHHTSCCEECHHHHHHHTSCSEEECTTT
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCCCEecCHHH
Confidence            34556666778899999999999999987543

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=91.23  E-value=0.13  Score=36.41  Aligned_cols=31  Identities=16%  Similarity=0.191  Sum_probs=24.2

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .-.+++-....++|+||.++||||+|+++..
T Consensus       165 ~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  195 (258)
T 3lao_A          165 DAMRYILTGDEFDADEALRMRLLTEVVEPGE  195 (258)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEECTTC
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCCcEeeChhH
Confidence            3445555666799999999999999987644

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=91.18  E-value=0.077  Score=37.32  Aligned_cols=30  Identities=13%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||.++||||+|+++..
T Consensus       154 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  183 (253)
T 1uiy_A          154 AKDLLLTGRLVEAREAKALGLVNRIAPPGK  183 (253)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSCSEEECTTC
T ss_pred             HHHHHHhCCccCHHHHHHCCCcceecChhH
Confidence            344444567899999999999999987543

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=90.50  E-value=0.1  Score=36.38  Aligned_cols=29  Identities=21%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|++++
T Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  184 (233)
T 3r6h_A          156 YQQAAGLAKTFFGETALAAGFIDEISLPE  184 (233)
T ss_dssp             HHHHHHSCCEECHHHHHHHTSCSEECCGG
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCcEeeCHH
Confidence            44555566789999999999999998653

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=90.06  E-value=0.19  Score=36.39  Aligned_cols=30  Identities=17%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||.++||||+|+++..
T Consensus       180 A~el~ltg~~i~A~eA~~~GLV~~vv~~~~  209 (291)
T 2fbm_A          180 ANEMLIAGRKLTAREACAKGLVSQVFLTGT  209 (291)
T ss_dssp             HHHHHTSCCEEEHHHHHHTTSCSEEECSTT
T ss_pred             HHHHHHcCCccCHHHHHHCCCcceecChhH
Confidence            444555667799999999999999987543

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=90.06  E-value=0.2  Score=35.41  Aligned_cols=28  Identities=32%  Similarity=0.539  Sum_probs=22.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      -.+++-....++|+||+++||||+|+..
T Consensus       160 a~~llltg~~~~a~eA~~~GLv~~vv~~  187 (260)
T 1sg4_A          160 AERALQLGLLFPPAEALQVGIVDQVVPE  187 (260)
T ss_dssp             HHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCCEecCH
Confidence            3445545567999999999999999864

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=90.03  E-value=0.13  Score=36.67  Aligned_cols=29  Identities=17%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|+...
T Consensus       168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  196 (273)
T 2uzf_A          168 AREIWYLCRQYNAQEALDMGLVNTVVPLE  196 (273)
T ss_dssp             HHHHHHTCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCccccCHH
Confidence            44555566789999999999999998654

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=89.88  E-value=0.11  Score=37.06  Aligned_cols=29  Identities=14%  Similarity=0.109  Sum_probs=23.0

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+++.
T Consensus       178 A~~llltG~~~~A~eA~~~GLv~~vv~~~  206 (263)
T 2j5g_A          178 GRYFLFTQEKLTAQQAYELNVVHEVLPQS  206 (263)
T ss_dssp             HHHHHHTTCCEEHHHHHHTTSCSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecChH
Confidence            34555556779999999999999998653

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=89.71  E-value=0.14  Score=36.43  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=23.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||.++||||+|+.+..
T Consensus       162 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~  191 (262)
T 3r9q_A          162 AMDLILTGRPVHANEALDIGLVNRVVARGQ  191 (262)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTTC
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEecChhH
Confidence            344554556899999999999999987654

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=89.35  E-value=0.36  Score=34.17  Aligned_cols=31  Identities=16%  Similarity=0.197  Sum_probs=24.9

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .-.+++-....++|+||.++||||+|+.+..
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  192 (265)
T 3swx_A          162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGE  192 (265)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEESTTC
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCCEecChhH
Confidence            3455666677899999999999999987644

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=89.18  E-value=0.37  Score=34.49  Aligned_cols=29  Identities=17%  Similarity=0.186  Sum_probs=23.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+...
T Consensus       182 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~  210 (280)
T 2f6q_A          182 ATEMLIFGKKLTAGEACAQGLVTEVFPDS  210 (280)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceEECHH
Confidence            44556667779999999999999998654

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=89.03  E-value=0.25  Score=34.94  Aligned_cols=29  Identities=17%  Similarity=0.219  Sum_probs=22.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+...
T Consensus       158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  186 (260)
T 1mj3_A          158 AMEMVLTGDRISAQDAKQAGLVSKIFPVE  186 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEEeChH
Confidence            34444455678999999999999998653

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=88.98  E-value=0.28  Score=34.85  Aligned_cols=31  Identities=10%  Similarity=-0.007  Sum_probs=24.4

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .-.+++-....++|+||.++||||+|+....
T Consensus       162 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  192 (265)
T 3qxi_A          162 IAMELALTGDNLSAERAHALGMVNVLAEPGA  192 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECTTC
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCccEeeChhH
Confidence            3455555567899999999999999987643

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=88.93  E-value=0.18  Score=36.01  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=23.2

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||+++||||+|+....
T Consensus       176 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  205 (278)
T 4f47_A          176 ACDLLLTGRHITAAEAKEMGLVGHVVPDGQ  205 (278)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTTC
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEeeChhH
Confidence            344444556789999999999999987654

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=88.68  E-value=0.27  Score=34.77  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|+...
T Consensus       163 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 2ppy_A          163 ALDMNITGETITPQEALEIGLVNRVFPQA  191 (265)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSSSEEECGG
T ss_pred             HHHHHHhCCccCHHHHHHCCCcceecCHH
Confidence            33444445679999999999999998643

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=88.29  E-value=0.3  Score=34.44  Aligned_cols=30  Identities=13%  Similarity=0.274  Sum_probs=23.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||.++||||+|+.+..
T Consensus       153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  182 (255)
T 3p5m_A          153 TSRMAMTAEKISAATAFEWGMISHITSADE  182 (255)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEECCTTC
T ss_pred             HHHHHHcCCCcCHHHHHHCCCCCEeeCHHH
Confidence            344444556799999999999999987643

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=88.29  E-value=0.3  Score=34.18  Aligned_cols=28  Identities=14%  Similarity=0.355  Sum_probs=22.0

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      -.+++-....++|+||.++||||+|+++
T Consensus       154 a~~l~ltg~~~~a~eA~~~GLv~~vv~~  181 (250)
T 2a7k_A          154 MQEIIYQCQSLDAPRCVDYRLVNQVVES  181 (250)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTCCSEEECH
T ss_pred             HHHHHHcCCcccHHHHHHcCCcceecCH
Confidence            3444445567999999999999999864

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=88.15  E-value=0.34  Score=34.28  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=24.0

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .-.+++-....++|+||.++||||+|+.+..
T Consensus       162 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  192 (265)
T 3rsi_A          162 KAMEMILTGEPLTAFEAYHFGLVGHVVPAGT  192 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEESTTC
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEecChhH
Confidence            3445555567799999999999999987644

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=88.04  E-value=0.15  Score=36.64  Aligned_cols=28  Identities=21%  Similarity=0.167  Sum_probs=22.6

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVL   70 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~   70 (91)
                      ..-.+++-....++|+||.++||||+|+
T Consensus       181 ~~A~ellltG~~i~A~eA~~~GLv~~vv  208 (276)
T 3rrv_A          181 LLAKEYALTGTRISAQRAVELGLANHVA  208 (276)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCHHHHH
Confidence            3444555566789999999999999998

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=87.98  E-value=0.14  Score=36.64  Aligned_cols=29  Identities=14%  Similarity=0.139  Sum_probs=22.8

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+...
T Consensus       168 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~  196 (272)
T 3qk8_A          168 AKYYLLTCETLSGEEAERIGLVSTCVDDD  196 (272)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCcEeeCHh
Confidence            34455456689999999999999998754

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=87.91  E-value=0.32  Score=34.21  Aligned_cols=29  Identities=14%  Similarity=0.233  Sum_probs=22.9

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|+.+.
T Consensus       160 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  188 (256)
T 3qmj_A          160 AAWLLMSSEWIDAEEALRMGLVWRICSPE  188 (256)
T ss_dssp             HHHHHHSCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHh
Confidence            34455566778999999999999998653

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=87.83  E-value=0.19  Score=35.56  Aligned_cols=26  Identities=15%  Similarity=0.156  Sum_probs=21.1

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCccee
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKV   69 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I   69 (91)
                      .-.+++-....++|+||.++||||+|
T Consensus       167 ~A~~l~ltg~~~~a~eA~~~GLv~~v  192 (267)
T 3oc7_A          167 AAARYYLTGEKFDARRAEEIGLITMA  192 (267)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred             HHHHHHHcCCccCHHHHHHCCChhhh
Confidence            34455555668999999999999999

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=87.77  E-value=0.31  Score=34.45  Aligned_cols=32  Identities=13%  Similarity=0.289  Sum_probs=25.2

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..-.+++-....++|+||+++||||+|+....
T Consensus       152 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  183 (256)
T 3trr_A          152 QVAMELALTGESFTAEDAAKYGFINRLVDDGQ  183 (256)
T ss_dssp             HHHHHHHHHCCCEEHHHHGGGTCCSEEECTTC
T ss_pred             HHHHHHHHhCCCcCHHHHHHCCCeeEecChHH
Confidence            34555665667899999999999999987644

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=87.76  E-value=0.15  Score=36.75  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=22.2

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++-....++|+||+++||||+|+....
T Consensus       186 ~~llltG~~i~A~eA~~~GLV~~vv~~~~  214 (290)
T 3sll_A          186 SDIMLTGRDVDADEAERIGLVSRKVASES  214 (290)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEECGGG
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEEeChhH
Confidence            34444455799999999999999987543

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=87.60  E-value=0.33  Score=34.18  Aligned_cols=30  Identities=17%  Similarity=0.189  Sum_probs=23.8

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .-.+++-....++|+||.++||||+|+.+.
T Consensus       155 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  184 (254)
T 3isa_A          155 QALSILGSARAFDADEARRIGFVRDCAAQA  184 (254)
T ss_dssp             HHHHHHTTTCEEEHHHHHHTTSSSEECCGG
T ss_pred             HHHHHHHhCCCCcHHHHHHCCCccEEeChh
Confidence            344555566779999999999999998753

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=87.59  E-value=0.15  Score=36.57  Aligned_cols=29  Identities=10%  Similarity=0.298  Sum_probs=22.3

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++-....++|+||+++||||+|+++..
T Consensus       177 ~~llltG~~i~A~eA~~~GLv~~vv~~~~  205 (279)
T 3t3w_A          177 KEILFTGRAMTAEEVAQTGMVNRVVPRDR  205 (279)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred             HHHHHcCCccCHHHHHHCCCCcEeeChHH
Confidence            34444455899999999999999987543

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=87.59  E-value=0.27  Score=34.62  Aligned_cols=29  Identities=17%  Similarity=0.083  Sum_probs=22.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|+.+.
T Consensus       155 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  183 (257)
T 2ej5_A          155 ALELAVLGEKVTAEEAAALGLATKVIPLS  183 (257)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTCCSEEECGG
T ss_pred             HHHHHHhCCccCHHHHHHcCCcceecChh
Confidence            34444456679999999999999998653

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=87.53  E-value=0.17  Score=36.05  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      .+++-....++|+||.++||||+|++
T Consensus       161 ~~l~ltg~~i~A~eA~~~GLv~~vv~  186 (266)
T 3fdu_A          161 AELLFTAKKFNAETALQAGLVNEIVE  186 (266)
T ss_dssp             HHHHHHCCEECHHHHHHTTSCSEECS
T ss_pred             HHHHHhCCCcCHHHHHHCCCHHHHHH
Confidence            44444455699999999999999986

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=87.38  E-value=0.17  Score=36.78  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=23.7

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .-.+++-....++|+||+++||||+|+....
T Consensus       190 ~A~ellltg~~i~A~eA~~~GLV~~vv~~~~  220 (298)
T 3qre_A          190 VALDLLLSGRTFLAEEAAQLGLVKEVVTPEQ  220 (298)
T ss_dssp             HHHHHHHHCCEEEHHHHHHTTSCSEEECGGG
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCCeEecCHHH
Confidence            3445555556899999999999999986543

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=87.35  E-value=0.36  Score=34.12  Aligned_cols=30  Identities=10%  Similarity=0.179  Sum_probs=23.9

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++--...++|+||.++||||+|+.++.
T Consensus       156 A~~llltg~~i~a~eA~~~GLv~~vv~~~~  185 (258)
T 4fzw_A          156 ASKMVLSGESITAQQAQQAGLVSDVFPSDL  185 (258)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTT
T ss_pred             HHHHHHcCCcCcHHHHHHCCCeeEEeCchH
Confidence            345555567899999999999999987654

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=87.27  E-value=0.29  Score=34.66  Aligned_cols=29  Identities=14%  Similarity=0.142  Sum_probs=22.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+.+.
T Consensus       165 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  193 (264)
T 1wz8_A          165 AKYHLLLNEPLTGEEAERLGLVALAVEDE  193 (264)
T ss_dssp             HHHHHHHTCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceeecChh
Confidence            34444455679999999999999998653

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=87.26  E-value=0.47  Score=33.81  Aligned_cols=29  Identities=17%  Similarity=0.060  Sum_probs=23.0

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+...
T Consensus       174 A~~llltg~~~~a~eA~~~GLv~~vv~~~  202 (280)
T 1pjh_A          174 TYECLMFNKPFKYDIMCENGFISKNFNMP  202 (280)
T ss_dssp             HHHHHHTTCCEEHHHHHHTTCCSEECCCC
T ss_pred             HHHHHHhCCCCCHHHHHHCCCcceeeCCc
Confidence            34455566779999999999999998653

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=87.20  E-value=0.39  Score=33.97  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=22.8

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      -.+++-....++|+||.++||||+|+++
T Consensus       169 A~~llltG~~~~A~eA~~~GLv~~vv~~  196 (257)
T 1szo_A          169 GRYFLLTGQELDARTALDYGAVNEVLSE  196 (257)
T ss_dssp             HHHHHHTTCEEEHHHHHHHTSCSEEECH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence            4555556678999999999999999864

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=87.18  E-value=0.32  Score=34.26  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=22.0

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      -.+++-....++|+||.++||||+|++.
T Consensus       156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~  183 (258)
T 2pbp_A          156 ALEWLWTGARMSAKEAEQLGIVNRVVSP  183 (258)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECG
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceeeCh
Confidence            3444445567899999999999999864

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=87.07  E-value=0.38  Score=34.43  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=24.2

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .-.+++-....++|+||.++||||+|+.+..
T Consensus       166 ~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~  196 (275)
T 3hin_A          166 RMADMMLTGRVYSAAEGVVHGFSQYLIENGS  196 (275)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEESSSC
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCCCEEeChhH
Confidence            3445555567899999999999999987644

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=87.05  E-value=0.36  Score=34.41  Aligned_cols=29  Identities=10%  Similarity=0.103  Sum_probs=22.6

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++-....++|+||.++||||+|+....
T Consensus       176 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  204 (279)
T 3g64_A          176 TRLLMLGDTVRAPEAERIGLISELTEEGR  204 (279)
T ss_dssp             HHHHHHCCCEEHHHHHHHTCCSEECCTTC
T ss_pred             HHHHHcCCCcCHHHHHHCCCCCEecCchH
Confidence            44444556799999999999999987543

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=87.03  E-value=0.35  Score=34.40  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||+++||||+|+.+..
T Consensus       166 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  195 (272)
T 1hzd_A          166 AKELIFSARVLDGKEAKAVGLISHVLEQNQ  195 (272)
T ss_dssp             HHHHHHHTCEEEHHHHHHHTSCSEEECCCT
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcceecChhh
Confidence            344444556789999999999999987654

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=86.99  E-value=0.41  Score=34.00  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=24.4

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .-.+++-....++|+||.++||||+|+....
T Consensus       161 ~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~  191 (267)
T 3r9t_A          161 VAMRLLLTGEPLSAAAARDWGLINEVVEAGS  191 (267)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSSSEEECTTC
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEcChhH
Confidence            3445555567899999999999999987654

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=86.95  E-value=0.38  Score=33.93  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=22.5

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .-.+++-....++|+||+++||||+|+.+
T Consensus       156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  184 (261)
T 1ef8_A          156 IVKELIFTASPITAQRALAVGILNHVVEV  184 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECH
T ss_pred             HHHHHHHcCCccCHHHHHHCCCcccccCH
Confidence            34445545568999999999999999864

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=86.90  E-value=0.17  Score=36.22  Aligned_cols=29  Identities=17%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++-....++|+||.++||||+|+....
T Consensus       171 ~~llltg~~i~A~eA~~~GLv~~vv~~~~  199 (275)
T 4eml_A          171 REIWYLCRQYSAQEAERMGMVNTVVPVDR  199 (275)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred             HHHHHhCCCcCHHHHHHcCCccEeeCHHH
Confidence            44444455699999999999999987543

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=86.68  E-value=0.27  Score=35.73  Aligned_cols=30  Identities=13%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++--...++|+||+++||||+|+....
T Consensus       201 A~~llltG~~i~A~eA~~~GLv~~vv~~~~  230 (305)
T 3m6n_A          201 AQKIMLEGNLYSAEQLLGMGLVDRVVPRGQ  230 (305)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSCSEEECTTC
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCCEecChhH
Confidence            334444456899999999999999987644

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=86.62  E-value=0.29  Score=34.68  Aligned_cols=29  Identities=10%  Similarity=0.147  Sum_probs=22.8

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|+++.
T Consensus       161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  189 (263)
T 3moy_A          161 AMDLCLTGRSLTAEEAERVGLVSRIVPAA  189 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCch
Confidence            34445456689999999999999998754

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=86.58  E-value=0.31  Score=34.19  Aligned_cols=29  Identities=24%  Similarity=0.348  Sum_probs=22.3

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++=....++|+||.++||||+|+++..
T Consensus       153 ~~llltg~~i~A~eA~~~GLv~~vv~~~~  181 (254)
T 3hrx_A          153 QELLLLSPRLSAEEALALGLVHRVVPAEK  181 (254)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred             HHHhhcCcccCHHHHHHCCCeEEecCcHH
Confidence            33444455689999999999999987654

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=86.44  E-value=0.31  Score=34.12  Aligned_cols=28  Identities=21%  Similarity=0.145  Sum_probs=21.9

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      -.+++-....++|+||.++||||+|+++
T Consensus       151 a~~l~ltg~~~~a~eA~~~GLv~~vv~~  178 (243)
T 2q35_A          151 AQEMIYTGENYRGKELAERGIPFPVVSR  178 (243)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTCSSCEECH
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCCEecCh
Confidence            3444444567999999999999999864

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=86.44  E-value=0.37  Score=33.99  Aligned_cols=28  Identities=14%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .+++-....++|+||.++||||+|+.+.
T Consensus       163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~  190 (261)
T 2gtr_A          163 NEMLLSGRKLTAQEACGKGLVSQVFWPG  190 (261)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECGG
T ss_pred             HHHHHcCCCCCHHHHHHCCCcccccChh
Confidence            3444445569999999999999998643

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=86.34  E-value=0.32  Score=34.47  Aligned_cols=29  Identities=17%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|++..
T Consensus       153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  181 (256)
T 3pe8_A          153 ARRMSLTGDYLSAQDALRAGLVTEVVAHD  181 (256)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSCEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCeEEeCHh
Confidence            34444445569999999999999998754

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=86.30  E-value=0.33  Score=34.41  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=22.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+.+.
T Consensus       163 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3kqf_A          163 AKELIYTGRRISAQEAKEYGLVEFVVPVH  191 (265)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHH
Confidence            33444456679999999999999998754

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=86.23  E-value=0.43  Score=33.78  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      +++-....++|+||.++||||+|++.
T Consensus       161 ~l~ltg~~~~A~eA~~~GLv~~vv~~  186 (265)
T 3qxz_A          161 ELLLTGASFSAQRAVETGLANRCLPA  186 (265)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSEEECH
T ss_pred             HHHHcCCCcCHHHHHHCCCccEeeCH
Confidence            34434457899999999999999865

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=86.20  E-value=0.23  Score=35.29  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             cCCHHHHHHcCCcceeecCC
Q 039249           54 YFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        54 wmta~EA~eyGliD~I~~~~   73 (91)
                      .++|+||.++||||+|+...
T Consensus       181 ~~~A~eA~~~GLv~~vv~~~  200 (274)
T 3tlf_A          181 RMSAQRAYELGLISEIVEHD  200 (274)
T ss_dssp             CEEHHHHHHHTSSSEEECGG
T ss_pred             ccCHHHHHHCCCCCeecCHH
Confidence            89999999999999998754

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=86.00  E-value=0.23  Score=36.52  Aligned_cols=31  Identities=10%  Similarity=0.140  Sum_probs=24.4

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..-.+++--..-++|+||+++||||+|+...
T Consensus       213 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~  243 (333)
T 3njd_A          213 QRAKRLLFTGDCITGAQAAEWGLAVEAPDPA  243 (333)
T ss_dssp             HHHHHHHTTCCEEEHHHHHHTTSSSBCCCGG
T ss_pred             HHHHHHHhcCCCCCHHHHHHCCCccEecChH
Confidence            3445566666779999999999999998653

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=86.00  E-value=0.38  Score=34.32  Aligned_cols=30  Identities=20%  Similarity=0.163  Sum_probs=23.2

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||.++||||+|+++..
T Consensus       172 A~~llltg~~i~A~eA~~~GLv~~vv~~~~  201 (274)
T 4fzw_C          172 AMGLALLGNQLSAEQAHEWGMIWQVVDDET  201 (274)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGG
T ss_pred             HHHHHHhCCcCCHHHHHHCCCceEEeChHH
Confidence            344444556799999999999999987543

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=85.75  E-value=0.4  Score=34.49  Aligned_cols=30  Identities=20%  Similarity=0.138  Sum_probs=23.2

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .-.+++-....++|+||+++||||+|+.+.
T Consensus       185 ~A~~llltg~~i~A~eA~~~GLv~~vv~~~  214 (287)
T 2vx2_A          185 VALEMLFTGEPISAQEALLHGLLSKVVPEA  214 (287)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHHHHHhCCCCCHHHHHHCCCcceecCHH
Confidence            344455556679999999999999998653

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=85.70  E-value=0.28  Score=34.78  Aligned_cols=29  Identities=14%  Similarity=0.248  Sum_probs=22.5

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .-.+++-....++|+||.++||||+|+.+
T Consensus       168 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  196 (275)
T 1dci_A          168 LVNELTFTARKMMADEALDSGLVSRVFPD  196 (275)
T ss_dssp             HHHHHHHHCCEEEHHHHHHHTSSSEEESS
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCcceecCC
Confidence            33444445567999999999999999865

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=85.66  E-value=0.4  Score=33.92  Aligned_cols=29  Identities=17%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+...
T Consensus       159 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  187 (261)
T 3pea_A          159 ACEMMLTSTPITGAEALKWGLVNGVFAEE  187 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHH
Confidence            34444445679999999999999998753

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=85.62  E-value=0.36  Score=34.64  Aligned_cols=29  Identities=17%  Similarity=0.452  Sum_probs=22.9

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||+++||||+|+...
T Consensus       176 A~~llltG~~i~A~eA~~~GLV~~vv~~~  204 (277)
T 4di1_A          176 AKELVFSGRFFDAEEALALGLIDDMVAPD  204 (277)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeChh
Confidence            34455556789999999999999998754

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=85.51  E-value=0.42  Score=34.37  Aligned_cols=30  Identities=13%  Similarity=0.261  Sum_probs=23.1

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .-.+++-....++|+||.++||||+|+...
T Consensus       178 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~  207 (286)
T 3myb_A          178 AAFEMLVTGEFVSADDAKGLGLVNRVVAPK  207 (286)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCCcEecCHH
Confidence            344555445669999999999999998754

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=85.38  E-value=0.4  Score=34.12  Aligned_cols=29  Identities=7%  Similarity=0.164  Sum_probs=23.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-...-++|+||.++||||+|++..
T Consensus       159 A~~llltg~~i~A~eA~~~GLV~~vv~~~  187 (268)
T 3i47_A          159 AKMLFMSAEVFDATRAYSLNLVQHCVPDD  187 (268)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred             HHHHHHcCCccCHHHHHHcCCCcEeeChh
Confidence            34455556789999999999999998764

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=85.36  E-value=0.38  Score=34.50  Aligned_cols=30  Identities=17%  Similarity=0.223  Sum_probs=23.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -.+++-....++|+||+++||||+|+....
T Consensus       176 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~  205 (278)
T 3h81_A          176 AMDLILTGRTMDAAEAERSGLVSRVVPADD  205 (278)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred             HHHHHHhCCCcCHHHHHHCCCccEEeChhH
Confidence            344544556799999999999999987543

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=85.32  E-value=0.58  Score=33.28  Aligned_cols=28  Identities=25%  Similarity=0.173  Sum_probs=21.7

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      -.+++-....++|+||.++||||+|+++
T Consensus       160 A~ellltg~~i~A~eA~~~GLV~~vv~~  187 (267)
T 3hp0_A          160 AHYMTLMTKPISVQEASEWGLIDAFDAE  187 (267)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSSSCBCSC
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCC
Confidence            3444444568999999999999999853

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=85.10  E-value=0.48  Score=33.50  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      +++-....++|+||.++||||+|+.+
T Consensus       163 ~l~ltg~~~~a~eA~~~GLv~~vv~~  188 (269)
T 1nzy_A          163 ELMLTNRTLYPEEAKDWGLVSRVYPK  188 (269)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSCEECH
T ss_pred             HHHHcCCCCCHHHHHHCCCccEeeCH
Confidence            33434566999999999999999864

>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*

Probab=84.56  E-value=4.7  Score=28.06  Aligned_cols=50  Identities=20%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHhhCCCHHHHHHhhc-CCCc----CCH----------HHHHHcCCcceeec
Q 039249           22 EIKNVKAELVKLYAKHFGKTPEQIEADIR-RPKY----FSP----------SEAVEYGIMDKVLY   71 (91)
Q Consensus        22 ~l~~~~~~i~~iYa~~TG~~~e~I~~~m~-rd~w----mta----------~EA~eyGliD~I~~   71 (91)
                      .+....+...+++++.+|.+.+.+...++ +-.|    +++          +-..+.|++++-+.
T Consensus       241 ~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gli~~~~~  305 (324)
T 3ksx_A          241 LLERDRAGSIKTLAQVSGLPPAVVERTLAHRPPASVQPLSAQVIKAQQATADLFYAQRLLPKRVL  305 (324)
T ss_dssp             HHHHTHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCCBCCCHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred             HHHHCHHHHHHHHHHHHCcCHHHHHHHHhhcCcCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCc
Confidence            33444556778889999999999999988 5444    444          34578899886544

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=84.35  E-value=0.51  Score=33.63  Aligned_cols=28  Identities=21%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      -.+++-....++|+||.++||||+|++.
T Consensus       167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~  194 (276)
T 2j5i_A          167 SLMYIMTGKTFGGQKAAEMGLVNESVPL  194 (276)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEEECH
T ss_pred             HHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence            3444545667999999999999999864

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=84.23  E-value=0.55  Score=33.21  Aligned_cols=27  Identities=19%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      -.+++-....++|+||.++||||+|+.
T Consensus       162 A~~l~ltg~~~~a~eA~~~GLv~~vv~  188 (263)
T 3lke_A          162 TMNLLLEGKLFTSEEALRLGLIQEICE  188 (263)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEES
T ss_pred             HHHHHHhCCCcCHHHHHHcCCCcEecC
Confidence            344544556899999999999999987

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=84.18  E-value=0.49  Score=33.46  Aligned_cols=29  Identities=10%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      .-.+++-....++|+||+++||||+|+++
T Consensus       163 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  191 (263)
T 3l3s_A          163 AVTEMALTGATYDADWALAAGLINRILPE  191 (263)
T ss_dssp             HHHHHHHHCCEEEHHHHHHHTSSSEECCH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence            34455555567999999999999999864

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=83.99  E-value=0.52  Score=33.99  Aligned_cols=29  Identities=10%  Similarity=0.189  Sum_probs=21.8

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .+++-....++|+||.++||||+|+....
T Consensus       185 ~~llltG~~i~A~eA~~~GLV~~vv~~~~  213 (289)
T 3t89_A          185 REIWFLCRQYDAKQALDMGLVNTVVPLAD  213 (289)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEECGGG
T ss_pred             HHHHHcCCcccHHHHHHCCCceEeeCHHH
Confidence            33443445699999999999999987543

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=82.96  E-value=0.46  Score=35.27  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.2

Q ss_pred             CCCcCCHHHHHHcCCcceeecCCC
Q 039249           51 RPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        51 rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      -...++|+||+++||||+|+.++.
T Consensus       171 tG~~i~A~eA~~~GLv~~vv~~~~  194 (353)
T 4hdt_A          171 TGAPFSGADAIVMGFADHYVPHDK  194 (353)
T ss_dssp             HCCCBCHHHHHHHTSCSEECCGGG
T ss_pred             cCCCCCHHHHHHcCCCcEEeCHHH
Confidence            345789999999999999987654

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=82.44  E-value=0.61  Score=33.59  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .+++-....++|+||.++||||+|+.+.
T Consensus       169 ~ellltG~~i~A~eA~~~GLV~~vv~~~  196 (287)
T 3gkb_A          169 LEVVLTADLFDAETAASYGWINRALPAD  196 (287)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEECHH
T ss_pred             HHHHHcCCCCCHHHHHHCCCCcEEeChh
Confidence            4444445679999999999999998653

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=82.35  E-value=0.61  Score=33.59  Aligned_cols=29  Identities=14%  Similarity=0.218  Sum_probs=22.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      -.+++-....++|+||.++||||+|+++.
T Consensus       165 A~ellltG~~i~A~eA~~~GLV~~vv~~~  193 (289)
T 3h0u_A          165 ALEAVLTSSDFDADLAERYGWVNRAVPDA  193 (289)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHH
Confidence            34444445569999999999999998653

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=81.12  E-value=0.6  Score=34.53  Aligned_cols=28  Identities=7%  Similarity=0.100  Sum_probs=21.5

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      +++-.-..++|+||.++||||+|+....
T Consensus       231 ellltG~~i~A~eA~~~GLV~~vv~~~~  258 (334)
T 3t8b_A          231 EIFFLGRTYTAEQMHQMGAVNAVAEHAE  258 (334)
T ss_dssp             HHHHHCCEEEHHHHHHHTSCSEEECGGG
T ss_pred             HHHHhCCcCCHHHHHHCCCCcEecCHHH
Confidence            3433445689999999999999987543

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=80.93  E-value=0.82  Score=32.59  Aligned_cols=27  Identities=11%  Similarity=0.161  Sum_probs=21.5

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLY   71 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~   71 (91)
                      -.+++-....++|+||.++||||+|..
T Consensus       168 A~~llltG~~i~A~eA~~~GLV~~v~~  194 (264)
T 3he2_A          168 ARAMLLSAEKLTAEIALHTGMANRIGT  194 (264)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEECC
T ss_pred             HHHHHHcCCCccHHHHHHCCCeEEEec
Confidence            344555567899999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	3e-21
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	8e-21
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	2e-17
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	7e-16
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	7e-14

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 3e-21
 Identities = 34/70 (48%), Positives = 47/70 (67%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA
Sbjct: 120 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 179

Query: 61  VEYGIMDKVL 70
            E+GI+DKVL
Sbjct: 180 QEFGILDKVL 189

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score = 79.2 bits (195), Expect = 8e-21
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EA
Sbjct: 110 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 169

Query: 61  VEYGIMDKVL 70
           VEYG++D +L
Sbjct: 170 VEYGLVDSIL 179

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 70.4 bits (172), Expect = 2e-17
 Identities = 25/70 (35%), Positives = 46/70 (65%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           ++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+IEAD  R ++F+ +EA
Sbjct: 107 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEA 166

Query: 61  VEYGIMDKVL 70
           +EYG +D ++
Sbjct: 167 LEYGFVDHII 176

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score = 66.7 bits (162), Expect = 7e-16
 Identities = 29/75 (38%), Positives = 40/75 (53%)

Query: 1   MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
           MI QP+G   G   D+EI  KEI  +K  L    +    +T E IE D  R  Y +  EA
Sbjct: 111 MIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEA 170

Query: 61  VEYGIMDKVLYTEKS 75
            +YGI+D+V+ T+  
Sbjct: 171 KQYGIIDEVIETKLP 185

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 61.6 bits (149), Expect = 7e-14
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 16  VEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVL 70
           + IA + +   +  L K+ A++ G++ E++ AD  R  + S  E +EYG +D+++
Sbjct: 135 MAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIM 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	99.92
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	99.9
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	99.9
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	99.89
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	99.89
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	93.89
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	92.01
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	91.81
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	91.6
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	91.4
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	91.29
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	91.09
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	90.79
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	90.41
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	90.41
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	90.23
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	89.69
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	87.38
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	87.11
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	84.81

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.92  E-value=5.1e-26  Score=158.41  Aligned_cols=74  Identities=46%  Similarity=0.725  Sum_probs=72.1

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |||||+++++|+++|++.++++++++++.+.++|+++||+|.++|+++|+||+||||+||++|||||+|+++++
T Consensus       120 miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~~~p  193 (193)
T d1tg6a1         120 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP  193 (193)
T ss_dssp             EECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC
T ss_pred             HhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEccCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.90  E-value=1e-24  Score=151.09  Aligned_cols=74  Identities=39%  Similarity=0.555  Sum_probs=64.0

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      |+|||+++++|++.|++..+++++++++.+.++|+++||++.++|.++|+||+||+|+||++|||||+|++++.
T Consensus       111 miH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~~~  184 (190)
T d2f6ia1         111 MIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL  184 (190)
T ss_dssp             ESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCSS
T ss_pred             EEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEcccCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998754

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=7.3e-25  Score=150.40  Aligned_cols=72  Identities=35%  Similarity=0.696  Sum_probs=60.9

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      |||||+++++|++.+++..+++++++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++
T Consensus       107 miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         107 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             hcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999975

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.4e-24  Score=145.64  Aligned_cols=73  Identities=48%  Similarity=0.761  Sum_probs=71.4

Q ss_pred             CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249            1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus         1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      |+|||+++++|++.|++..+++++++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|++++
T Consensus       110 miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~~  182 (183)
T d1yg6a1         110 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR  182 (183)
T ss_dssp             EECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             EecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEeccC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999865

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=1e-23  Score=146.27  Aligned_cols=72  Identities=33%  Similarity=0.623  Sum_probs=58.7

Q ss_pred             CCCCCCccCCcC--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249            1 MIKQPIGRIEGQ--ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT   72 (91)
Q Consensus         1 MIHqP~~~~~G~--a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~   72 (91)
                      |||||++++.|+  +.+++..++++.++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++
T Consensus       118 miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         118 MIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             ECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            899999999886  567899999999999999999999999999999999999999999999999999999976

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.014  Score=39.32  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=25.8

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ....+++-.-..++|+||+++||||+|+++..
T Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  188 (245)
T d2f6qa1         157 AKATEMLIFGKKLTAGEACAQGLVTEVFPDST  188 (245)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECTTT
T ss_pred             chhhhhcccccccccccccccccccccCCcch
Confidence            34556666678899999999999999987654

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=92.01  E-value=0.018  Score=39.02  Aligned_cols=32  Identities=16%  Similarity=0.178  Sum_probs=25.0

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ....+++-....++|+||.++||||+|+++..
T Consensus       162 ~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~  193 (263)
T d1wz8a1         162 AKAKYHLLLNEPLTGEEAERLGLVALAVEDEK  193 (263)
T ss_dssp             HHHHHHHHHTCCEEHHHHHHHTSSSEEECGGG
T ss_pred             chhhhhcccccccchhHHHhcCCcccccchhh
Confidence            34455666667899999999999999987643

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=0.068  Score=35.92  Aligned_cols=31  Identities=19%  Similarity=0.081  Sum_probs=24.9

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      ..+++-....++|+||+++||||+|++.+..
T Consensus       170 a~~llltg~~~~a~eA~~~Glv~~v~~~~~~  200 (266)
T d1pjha_         170 TYECLMFNKPFKYDIMCENGFISKNFNMPSS  200 (266)
T ss_dssp             HHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred             hhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence            4455656778999999999999999876654

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.055  Score=36.52  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=26.6

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      .....++--..+++|+||+++||||+|+++...
T Consensus       158 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  190 (266)
T d1hzda_         158 SLAKELIFSARVLDGKEAKAVGLISHVLEQNQE  190 (266)
T ss_dssp             HHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTT
T ss_pred             HHHHhhhccCCccCHHHhhcccccccccChhhh
Confidence            445556666789999999999999999987653

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=91.40  E-value=0.033  Score=37.47  Aligned_cols=30  Identities=33%  Similarity=0.559  Sum_probs=23.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ..+++-....++|+||.++||||+|++...
T Consensus       159 a~~lll~g~~~~a~~A~~~Glv~~v~~~~~  188 (249)
T d1sg4a1         159 AERALQLGLLFPPAEALQVGIVDQVVPEEQ  188 (249)
T ss_dssp             HHHHHHHTCCBCHHHHHHHTSSSEEECGGG
T ss_pred             ccccccccccccHHHHHhhccccccCChHH
Confidence            344455566789999999999999987543

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=91.29  E-value=0.013  Score=39.77  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             HhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           47 ADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        47 ~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      .++-.-.-++|+||+++||||+|+++.
T Consensus       163 ~l~ltg~~i~a~eA~~~Glv~~vv~~~  189 (269)
T d1nzya_         163 ELMLTNRTLYPEEAKDWGLVSRVYPKD  189 (269)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSCEECHH
T ss_pred             hccccccccchhHHHHcCCcccccccc
Confidence            333345556999999999999998643

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=91.09  E-value=0.02  Score=38.68  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=23.8

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ...+++-....++|+||.++||||+|+++.
T Consensus       165 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  194 (249)
T d1szoa_         165 RGRYFLLTGQELDARTALDYGAVNEVLSEQ  194 (249)
T ss_dssp             HHHHHHHTTCEEEHHHHHHHTSCSEEECHH
T ss_pred             ceeeecccCCCCCHHHHHHhCCcCcccCHH
Confidence            345555566778999999999999998754

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.79  E-value=0.033  Score=38.19  Aligned_cols=31  Identities=6%  Similarity=0.058  Sum_probs=24.8

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ....++---..++|+||+++||||+|+.++.
T Consensus       191 ~a~~llltg~~~~a~eA~~~Glv~~vv~~~e  221 (297)
T d1q52a_         191 FAREIFFLGRTYTAEQMHQMGAVNAVAEHAE  221 (297)
T ss_dssp             HHHHHHHHCCEECHHHHHHHTSCSEEECGGG
T ss_pred             ceeeccccccccchHhhhhhccccccCchHH
Confidence            3455566678899999999999999987544

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.41  E-value=0.047  Score=36.14  Aligned_cols=31  Identities=13%  Similarity=0.209  Sum_probs=24.0

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ...+++=--..++|+||.++||||+|++.+.
T Consensus       153 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~  183 (253)
T d1uiya_         153 AAKDLLLTGRLVEAREAKALGLVNRIAPPGK  183 (253)
T ss_dssp             HHHHHHHHCCEEEHHHHHHHTSCSEEECTTC
T ss_pred             HHHHHhhcCcCCCHHHHHHhCCCcccccccc
Confidence            3445544567889999999999999987654

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.11  Score=34.78  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=25.7

Q ss_pred             HHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      .....++--..-++|+||+++||||+|+.+..
T Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  188 (258)
T d2fw2a1         157 ASANEMLIAGRKLTAREACAKGLVSQVFLTGT  188 (258)
T ss_dssp             HHHHHHHTTCCEEEHHHHHHTTSCSEEECSTT
T ss_pred             cccchhhccCcccccccccccccccccccccc
Confidence            33455666778899999999999999987654

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=90.23  E-value=0.085  Score=34.91  Aligned_cols=29  Identities=14%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE   73 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~   73 (91)
                      ..+++-...-++|+||.++||||+|+++.
T Consensus       154 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  182 (230)
T d2a7ka1         154 MQEIIYQCQSLDAPRCVDYRLVNQVVESS  182 (230)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTCCSEEECHH
T ss_pred             ccccccccccchHHHHHHhhhcccCCChH
Confidence            34444445677999999999999998753

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.079  Score=35.60  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=25.8

Q ss_pred             HHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           42 PEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        42 ~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ......++-.-..++|+||.++||||+|+.+..
T Consensus       154 ~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~  186 (261)
T d1ef8a_         154 FHIVKELIFTASPITAQRALAVGILNHVVEVEE  186 (261)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHH
T ss_pred             ccccccccccCceEcHHHHHHcCCcceeeechh
Confidence            344556666678899999999999999987543

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.38  E-value=0.17  Score=33.39  Aligned_cols=30  Identities=17%  Similarity=0.198  Sum_probs=22.8

Q ss_pred             HHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249           46 EADIRRPKYFSPSEAVEYGIMDKVLYTEKS   75 (91)
Q Consensus        46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~~   75 (91)
                      ..++=.-..++|+||+++||||+|++....
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~  188 (260)
T d1mj3a_         159 MEMVLTGDRISAQDAKQAGLVSKIFPVETL  188 (260)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECTTTH
T ss_pred             HHHHHcCcccCchhhccCCCceeeeccccc
Confidence            344434466899999999999999876653

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=87.11  E-value=0.14  Score=35.48  Aligned_cols=30  Identities=20%  Similarity=0.154  Sum_probs=23.3

Q ss_pred             HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ...++-....+||+||.++||||+|+.++.
T Consensus       164 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~  193 (310)
T d1wdka4         164 AVEWIASGKENRAEDALKVSAVDAVVTADK  193 (310)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGG
T ss_pred             hhhhhccccccCHHHHhhccCccEEccHHH
Confidence            344444566789999999999999987643

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.81  E-value=0.23  Score=33.17  Aligned_cols=31  Identities=13%  Similarity=0.250  Sum_probs=24.8

Q ss_pred             HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249           44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK   74 (91)
Q Consensus        44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~   74 (91)
                      ....++--...++|+||+++||||+|+..+.
T Consensus       168 ~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~  198 (275)
T d1dcia_         168 LVNELTFTARKMMADEALDSGLVSRVFPDKD  198 (275)
T ss_dssp             HHHHHHHHCCEEEHHHHHHHTSSSEEESSHH
T ss_pred             ccccccccccccchhhhccCCCceeeeehhh
Confidence            3445666778899999999999999987543