Citrus Sinensis ID: 039263
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | 2.2.26 [Sep-21-2011] | |||||||
| Q03795 | 547 | Uncharacterized membrane | yes | no | 0.831 | 0.747 | 0.223 | 5e-05 |
| >sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1 SV=1 | Back alignment and function desciption |
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Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 185/461 (40%), Gaps = 52/461 (11%)
Query: 42 AGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGS 100
AG Y+F Y+ + + S + LSFS +G + +G+L+G++ + +P L IGS
Sbjct: 32 AGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGILAGIVVDRSPKLSCL-IGS 90
Query: 101 IMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVK-NFPESRGSV 159
+ F Y ++ L + + L + IG S S A V C NFP+ RG+
Sbjct: 91 MCVFIAYLILNLCYKHEWSSTFLISLSL-VLIGYGSVS--GFYASVKCANTNFPQHRGTA 147
Query: 160 LGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANE 219
GLSG + + L +G+N + + + +L A + L + + I A
Sbjct: 148 GAFPVSLYGLSGMVFSYLCSKLFGENIEHVFI---FLMVACGCMILVGYFSLDIFSNAEG 204
Query: 220 LKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGS----------ASLVLILLFLPI 269
K + +V + +N +Y+GS + L F
Sbjct: 205 DDASIKEWELQKSRETDDNIVPLYENSN-----DYIGSPVRSSSPATYETYALSDNFQET 259
Query: 270 AIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGE 329
+ E + S +P L ++ H + E + AQ ++F
Sbjct: 260 SEFFALE-DRQLSNRPLLSPSSPHTKYDFEDENTSKNTVGENSAQKSMRLHVFQSLKSST 318
Query: 330 ---DYTILQALFSIDMLIIFIATTCGVGGTLTA---IDNLGQIGSSLGYPARSTTTFVSL 383
Y +L L + ++ I+ VG + A L Q+ + T +SL
Sbjct: 319 FIGYYIVLGILQGVGLMYIY-----SVGFMVQAQVSTPPLNQLPINAEKIQSLQVTLLSL 373
Query: 384 VSIWNYLGRVVAGFASEILLKKYKIPR--PLLFTFVLLF---SCVGHPFIAYGIPN---- 434
+S + GR+ +G S+ L+KK+K R ++ +L+F + + H F + P+
Sbjct: 374 LS---FCGRLSSGPISDFLVKKFKAQRLWNIVIASLLVFLASNKISHDFSSIEDPSLRAS 430
Query: 435 ----SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLY 471
++ S I G+ FG + +I+++ FG YSTL+
Sbjct: 431 KSFKNISVCSAIFGYSFGVLFGTFPSIVADRFGTNGYSTLW 471
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| 255556864 | 624 | conserved hypothetical protein [Ricinus | 0.991 | 0.782 | 0.787 | 0.0 | |
| 359481931 | 638 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.728 | 0.772 | 0.0 | |
| 147838379 | 613 | hypothetical protein VITISV_029213 [Viti | 0.945 | 0.758 | 0.770 | 0.0 | |
| 224068813 | 568 | predicted protein [Populus trichocarpa] | 0.947 | 0.820 | 0.743 | 0.0 | |
| 255556862 | 581 | conserved hypothetical protein [Ricinus | 0.991 | 0.839 | 0.730 | 0.0 | |
| 297739974 | 601 | unnamed protein product [Vitis vinifera] | 0.888 | 0.727 | 0.779 | 0.0 | |
| 255586799 | 544 | conserved hypothetical protein [Ricinus | 0.967 | 0.875 | 0.714 | 0.0 | |
| 356505269 | 586 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.829 | 0.704 | 0.0 | |
| 356572482 | 581 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.836 | 0.713 | 0.0 | |
| 356570778 | 571 | PREDICTED: uncharacterized protein LOC10 | 0.941 | 0.810 | 0.719 | 0.0 |
| >gi|255556864|ref|XP_002519465.1| conserved hypothetical protein [Ricinus communis] gi|223541328|gb|EEF42879.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/512 (78%), Positives = 443/512 (86%), Gaps = 24/512 (4%)
Query: 1 MVVSDFGGSCCS---LREMKSSSLVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKT 57
MV DF G+ R+MK S V+ GRWFMVFASLLIM+VAGATYMFGLYS+DIKT
Sbjct: 1 MVAVDFTGAANGSGWWRDMKGFSF-RVILGRWFMVFASLLIMSVAGATYMFGLYSNDIKT 59
Query: 58 SLGYDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGR 117
SLGYDQSTLNLLSF KD+GGNVG+LSGLINE+TPPWVVL+IG++MNFFGYFMIWLAVTG
Sbjct: 60 SLGYDQSTLNLLSFFKDLGGNVGILSGLINEVTPPWVVLSIGAVMNFFGYFMIWLAVTGH 119
Query: 118 IPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQL 177
I KP VWQMCLYICIGANSQSFANTGALVTCVKNFPESRGS+LGLLKGFVGLSGAILTQL
Sbjct: 120 IAKPTVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSILGLLKGFVGLSGAILTQL 179
Query: 178 YHAFYGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFL 237
YHA YGDNSKALILLIAWLPAA+SF+FLRT RII+IVRQANELK+FYK+LYISLGLAG L
Sbjct: 180 YHAIYGDNSKALILLIAWLPAAVSFIFLRTIRIIRIVRQANELKVFYKLLYISLGLAGLL 239
Query: 238 MVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELK 297
MV+II+QNK++F R EY+ S++LV+ LLFLPI IVIKEE L SKK +L D P +K
Sbjct: 240 MVLIIIQNKFSFTRIEYISSSALVVGLLFLPIVIVIKEEYDLWNSKKEALNDP--FP-VK 296
Query: 298 IVTELPPQ-----------QASPS------TEAQVCCTENIFMPPDRGEDYTILQALFSI 340
IVTE PPQ Q++P TE Q C +NIF PPDRGEDYTILQALFS+
Sbjct: 297 IVTETPPQVELTASTTPLEQSTPHTEIPQPTETQPSCADNIFKPPDRGEDYTILQALFSV 356
Query: 341 DMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASE 400
DMLI+FIATTCGVGGTLTAIDNLGQIG++LGYP RSTTTFVSLVSIWNYLGRVVAGFASE
Sbjct: 357 DMLILFIATTCGVGGTLTAIDNLGQIGNALGYPTRSTTTFVSLVSIWNYLGRVVAGFASE 416
Query: 401 ILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISE 460
ILL KYKIPRPLLFTFVLLFSCVGH IA+G+PNSLY ASVIIGFCFGAQWPLLFAIISE
Sbjct: 417 ILLTKYKIPRPLLFTFVLLFSCVGHLLIAFGVPNSLYIASVIIGFCFGAQWPLLFAIISE 476
Query: 461 IFGLKYYSTLYNFGAVASPVGAYILNVKVAGQ 492
IFGLKYYSTLYNFG+VASP+G+YILNV+VAG
Sbjct: 477 IFGLKYYSTLYNFGSVASPIGSYILNVRVAGH 508
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481931|ref|XP_002268663.2| PREDICTED: uncharacterized protein LOC100248651 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/487 (77%), Positives = 422/487 (86%), Gaps = 22/487 (4%)
Query: 24 VLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLS 83
VL GRWFMVFASLLIM+VAGATYMF LYS +IKTSLGYDQ+TLNLLSF KD+GGNVGVLS
Sbjct: 22 VLVGRWFMVFASLLIMSVAGATYMFSLYSGEIKTSLGYDQTTLNLLSFFKDLGGNVGVLS 81
Query: 84 GLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTG 143
GLINE+TPPWVVL IG++MNFFGYFMIWLAVT RI KPQ+WQMCLYICIGANSQSFANTG
Sbjct: 82 GLINEVTPPWVVLCIGAVMNFFGYFMIWLAVTDRIAKPQIWQMCLYICIGANSQSFANTG 141
Query: 144 ALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFV 203
ALVTCV+NFPESRG VLGLLKGFVGLSGAI+TQLY AFYGD+SK+LIL IAWLPAA+SFV
Sbjct: 142 ALVTCVRNFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAWLPAAVSFV 201
Query: 204 FLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263
FLRT RI+K+ RQANELK+FY +LY+SLGLAGFLMV+II+QNK+ F R EY GSA++VLI
Sbjct: 202 FLRTIRIMKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYSGSAAVVLI 261
Query: 264 LLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTE-----------------LPPQQ 306
LLFLP+A+VIKEEI++ K KK +L+ A ++K++TE LPP
Sbjct: 262 LLFLPLAVVIKEEINIWKGKKQALDAA----QVKVITENPPAVELASSPVVSLDQLPPPT 317
Query: 307 ASP-STEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQ 365
A+P + E V C + +F PPDRGEDYTILQALFSIDMLI+FI TTCGVGGTLTAIDNLGQ
Sbjct: 318 AAPENAEKSVSCFKTMFKPPDRGEDYTILQALFSIDMLILFIVTTCGVGGTLTAIDNLGQ 377
Query: 366 IGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGH 425
IGSS GY A STTTFVSLVSIWNYLGRVV+GFASEI L +YK PRPL+ TFVLLFSCVGH
Sbjct: 378 IGSSQGYTAHSTTTFVSLVSIWNYLGRVVSGFASEIFLTRYKFPRPLMLTFVLLFSCVGH 437
Query: 426 PFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYIL 485
IA+ +PNSLY ASVIIGFCFGAQWPL+FAIISE+FGLKYYSTLYNFGAVASPVG+YIL
Sbjct: 438 LLIAFAVPNSLYFASVIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGAVASPVGSYIL 497
Query: 486 NVKVAGQ 492
NVKVAG
Sbjct: 498 NVKVAGH 504
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838379|emb|CAN63260.1| hypothetical protein VITISV_029213 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/487 (77%), Positives = 420/487 (86%), Gaps = 22/487 (4%)
Query: 24 VLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLS 83
VL GRWFMVFASLLIM+VAGATYMF LYS IKTSLGYDQ+TLNLLSF KD+GGNVGVLS
Sbjct: 8 VLVGRWFMVFASLLIMSVAGATYMFSLYSGXIKTSLGYDQTTLNLLSFFKDLGGNVGVLS 67
Query: 84 GLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTG 143
GLINE+TPPWVVL IG++MNFFGYFMIWLAVT RI KPQ+WQMCLYICIGANSQSFANTG
Sbjct: 68 GLINEVTPPWVVLCIGAVMNFFGYFMIWLAVTDRIAKPQIWQMCLYICIGANSQSFANTG 127
Query: 144 ALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFV 203
ALVTCV+NFPESRG VLGLLKGFVGLSGAI+TQLY AFYGD+SK+LIL IAWLP A+SFV
Sbjct: 128 ALVTCVRNFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAWLPXAVSFV 187
Query: 204 FLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263
FLRT RI+K+ RQANELK+FY +LY+SLGLAGFLMV+II+QNK+ F R EY GSA++VLI
Sbjct: 188 FLRTIRIMKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYSGSAAVVLI 247
Query: 264 LLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTE-----------------LPPQQ 306
LLFLP+A+VIKEEI++ K KK +L+ A ++K++TE LPP
Sbjct: 248 LLFLPLAVVIKEEINIWKXKKQALDAA----QVKVITENPXAVELASSPVVSLXQLPPPT 303
Query: 307 ASP-STEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQ 365
A+P + E V C + +F PPDRGEDYTILQALFSIDMLI+FI TTCGVGGTLTAIDNLGQ
Sbjct: 304 AAPENAEKSVSCFKTMFKPPDRGEDYTILQALFSIDMLILFIVTTCGVGGTLTAIDNLGQ 363
Query: 366 IGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGH 425
IGSS GY A STTTFVSLVSIWNYLGRVV+GFASEI L +YK PRPL+ TFVLLFSCVGH
Sbjct: 364 IGSSXGYTAHSTTTFVSLVSIWNYLGRVVSGFASEIFLTRYKFPRPLMLTFVLLFSCVGH 423
Query: 426 PFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYIL 485
IA+ +PNSLY ASVIIGFCFGAQWPL+FAIISE+FGLKYYSTLYNFGAVASPVG+YIL
Sbjct: 424 LLIAFAVPNSLYFASVIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGAVASPVGSYIL 483
Query: 486 NVKVAGQ 492
NVKVAG
Sbjct: 484 NVKVAGH 490
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068813|ref|XP_002326206.1| predicted protein [Populus trichocarpa] gi|222833399|gb|EEE71876.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/488 (74%), Positives = 417/488 (85%), Gaps = 22/488 (4%)
Query: 24 VLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLS 83
VL GRWFMVFAS LIMA++GATYMF LYS+DIK SLGYDQSTLNLLSF KDVGGNVG+L
Sbjct: 8 VLLGRWFMVFASFLIMAMSGATYMFSLYSTDIKRSLGYDQSTLNLLSFFKDVGGNVGLLP 67
Query: 84 GLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTG 143
G+INE++PPWV+L+ G +MNFFGYFMIWLA+TG+I KP+VWQMCLYICIGANSQ+FA TG
Sbjct: 68 GVINEVSPPWVILSAGVVMNFFGYFMIWLAITGKIAKPKVWQMCLYICIGANSQTFATTG 127
Query: 144 ALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFV 203
ALVTCVKNFPESRGSVLGLLKGFVGLSGAI+TQ+YHAFYGD+SKA ILLIAWLPAA+SF+
Sbjct: 128 ALVTCVKNFPESRGSVLGLLKGFVGLSGAIMTQVYHAFYGDDSKAFILLIAWLPAAVSFI 187
Query: 204 FLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263
FLRT RI+KIVRQANE+K+FY++LYISLGLAGFLM++II+QNK+ F R EY+G A +VLI
Sbjct: 188 FLRTIRIMKIVRQANEIKVFYQLLYISLGLAGFLMILIIIQNKFRFTRIEYIGGAIVVLI 247
Query: 264 LLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQ------------------ 305
LLFLP+A+ IKEE + KSKK D + ++KIVTE PP+
Sbjct: 248 LLFLPVAVAIKEEYDIWKSKKVVFSDPS---QVKIVTENPPEVELPLSTQPPESLPSNAS 304
Query: 306 -QASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLG 364
A+ S E Q C ENIF PP+RGEDYTILQALFS+DML++FIA TCG+GGTLTA+DNLG
Sbjct: 305 DPAATSAEKQTSCFENIFKPPERGEDYTILQALFSLDMLVLFIAATCGIGGTLTAVDNLG 364
Query: 365 QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVG 424
QIG SLGYP+RS TTFVSLVSIWNYLGRVV+GFASEILLKKYKIPRPLL + VLLF+C G
Sbjct: 365 QIGHSLGYPSRSITTFVSLVSIWNYLGRVVSGFASEILLKKYKIPRPLLLSIVLLFTCAG 424
Query: 425 HPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484
H IA+ NSLY ASVI+GFCFGAQWPL++AIISEIFGLKYYSTLYNFGAVASPVG+YI
Sbjct: 425 HILIAFPSSNSLYFASVILGFCFGAQWPLMYAIISEIFGLKYYSTLYNFGAVASPVGSYI 484
Query: 485 LNVKVAGQ 492
LNV +AG
Sbjct: 485 LNVVIAGD 492
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556862|ref|XP_002519464.1| conserved hypothetical protein [Ricinus communis] gi|223541327|gb|EEF42878.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/508 (73%), Positives = 420/508 (82%), Gaps = 20/508 (3%)
Query: 1 MVVSD-FGGSCCSLREMKSSSLVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSL 59
MVV+D FG REMK L VL GRWFMVF+SLLIMA+AG YMFG+YS+DIKTSL
Sbjct: 1 MVVADLFGADGGGWREMKGFVLT-VLVGRWFMVFSSLLIMAMAGTGYMFGMYSNDIKTSL 59
Query: 60 GYDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIP 119
GYDQ+TLNLLSF KDVGGNVG+LSGLINE++PPWVVL+IG+IMNF GYFMIW++VTGRI
Sbjct: 60 GYDQTTLNLLSFFKDVGGNVGILSGLINEVSPPWVVLSIGAIMNFLGYFMIWISVTGRIT 119
Query: 120 KPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYH 179
KP+VWQMCLY+ + N+Q+F+NTGALVTCVKNFPESRG V+GLLK FVGLSGAI+TQ YH
Sbjct: 120 KPKVWQMCLYMYLSTNAQAFSNTGALVTCVKNFPESRGGVIGLLKSFVGLSGAIMTQFYH 179
Query: 180 AFYGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMV 239
AFYGDNSKALILL+AW PA +SFVFLR RI+KIVRQANE KIF+K YISLGLA LMV
Sbjct: 180 AFYGDNSKALILLLAWFPACVSFVFLRVVRIMKIVRQANENKIFHKFFYISLGLASVLMV 239
Query: 240 VIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIV 299
+II+Q K++F R EYVGSAS+V++LL LPIAIV+KEE LRKSKK +L N L +V
Sbjct: 240 LIIIQKKFSFTRIEYVGSASVVVVLLLLPIAIVVKEEHDLRKSKKVAL---NGPSPLDVV 296
Query: 300 TE---------------LPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLI 344
TE PP +A + E QV C +IF PP RGEDY ILQALFS+DML+
Sbjct: 297 TENLPPVELTKLSLEQSTPPARAPTAAEKQVSCVTSIFNPPARGEDYGILQALFSVDMLV 356
Query: 345 IFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLK 404
+F+AT CG+GGTLTAIDNLGQIG SLGYPARST TFVSLVSIWNYLGR VAGFASEILL
Sbjct: 357 LFVATACGIGGTLTAIDNLGQIGQSLGYPARSTATFVSLVSIWNYLGRAVAGFASEILLT 416
Query: 405 KYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGL 464
KYKIPRPLLFT VLLFSC GH IA+G+PNSLY ASVIIGFCFGAQ PL+FAIISE+FGL
Sbjct: 417 KYKIPRPLLFTIVLLFSCFGHLLIAFGVPNSLYFASVIIGFCFGAQLPLMFAIISELFGL 476
Query: 465 KYYSTLYNFGAVASPVGAYILNVKVAGQ 492
KYYSTLYNFGAVASPVG+Y+LNV VAG
Sbjct: 477 KYYSTLYNFGAVASPVGSYVLNVIVAGH 504
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739974|emb|CBI30156.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/462 (77%), Positives = 400/462 (86%), Gaps = 25/462 (5%)
Query: 31 MVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEIT 90
MVFASLLIM+VAGATYMF LYS +IKTSLGYDQ+TLNLLSF KD+GGNVGVLSGLINE+T
Sbjct: 1 MVFASLLIMSVAGATYMFSLYSGEIKTSLGYDQTTLNLLSFFKDLGGNVGVLSGLINEVT 60
Query: 91 PPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVK 150
PPWVVL IG++MNFFGYFMIWLAVT RI KPQ+WQMCLYICIGANSQSFANTGALVTCV+
Sbjct: 61 PPWVVLCIGAVMNFFGYFMIWLAVTDRIAKPQIWQMCLYICIGANSQSFANTGALVTCVR 120
Query: 151 NFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVFLRTFRI 210
NFPESRG VLGLLKGFVGLSGAI+TQLY AFYGD+SK+LIL IAWLPAA+SFVFLRT RI
Sbjct: 121 NFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAWLPAAVSFVFLRTIRI 180
Query: 211 IKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIA 270
+K+ RQANELK+FY +LY+SLGLAGFLMV+II+QNK+ F R EY GSA++VLILLFLP+A
Sbjct: 181 MKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYSGSAAVVLILLFLPLA 240
Query: 271 IVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGED 330
+VIKEEI++ K+ P+ A E V C + +F PPDRGED
Sbjct: 241 VVIKEEINIWKA---------------------PENA----EKSVSCFKTMFKPPDRGED 275
Query: 331 YTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYL 390
YTILQALFSIDMLI+FI TTCGVGGTLTAIDNLGQIGSS GY A STTTFVSLVSIWNYL
Sbjct: 276 YTILQALFSIDMLILFIVTTCGVGGTLTAIDNLGQIGSSQGYTAHSTTTFVSLVSIWNYL 335
Query: 391 GRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQ 450
GRVV+GFASEI L +YK PRPL+ TFVLLFSCVGH IA+ +PNSLY ASVIIGFCFGAQ
Sbjct: 336 GRVVSGFASEIFLTRYKFPRPLMLTFVLLFSCVGHLLIAFAVPNSLYFASVIIGFCFGAQ 395
Query: 451 WPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNVKVAGQ 492
WPL+FAIISE+FGLKYYSTLYNFGAVASPVG+YILNVKVAG
Sbjct: 396 WPLVFAIISELFGLKYYSTLYNFGAVASPVGSYILNVKVAGH 437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586799|ref|XP_002534014.1| conserved hypothetical protein [Ricinus communis] gi|223525979|gb|EEF28367.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/490 (71%), Positives = 410/490 (83%), Gaps = 14/490 (2%)
Query: 13 LREMKSSSLVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFS 72
L +MK+ + + V+TGRWFMVFAS LIM+ AGATYMF LYS DIK++LGYDQ+TLNLLSF
Sbjct: 14 LADMKNLT-IQVITGRWFMVFASFLIMSAAGATYMFSLYSGDIKSALGYDQTTLNLLSFF 72
Query: 73 KDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICI 132
KD+G NVGVLSGLINE+TPPWVVL++G+++NFFGYFMIWLAVT +I VW MCLYICI
Sbjct: 73 KDLGANVGVLSGLINEVTPPWVVLSMGAVLNFFGYFMIWLAVTRKITGVHVWHMCLYICI 132
Query: 133 GANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILL 192
GANSQSFANTG+LVTCVKNFPESRG+VLG+LKG+VGLSGAI+TQLYHAFYGD+SKALILL
Sbjct: 133 GANSQSFANTGSLVTCVKNFPESRGAVLGILKGYVGLSGAIITQLYHAFYGDDSKALILL 192
Query: 193 IAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRF 252
I WLPAAISF FLRT RI+K++RQ NELK+FY LYISLGLAGFLM++II++ + F R
Sbjct: 193 IGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMIIIIVEKQLQFNRA 252
Query: 253 EYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQA----- 307
EY SA++V+ LLFLP+AIV EE + KSKK +L D + L I+TE P QQ
Sbjct: 253 EYGASAAMVIFLLFLPLAIVCIEEYKIWKSKKVALNDPS---PLNIITEKPRQQEITVPS 309
Query: 308 -----SPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362
S+ + V C + F PPDRGEDYTILQALFS+DMLI+F+AT CGVGGTLTAIDN
Sbjct: 310 SSSIEDNSSSSNVSCWKTCFRPPDRGEDYTILQALFSVDMLILFLATICGVGGTLTAIDN 369
Query: 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSC 422
LGQIG+SLGYP RS +TFVSLVSIWNYLGRVVAGFASE L KYK PRPL+ T +LLFSC
Sbjct: 370 LGQIGTSLGYPKRSISTFVSLVSIWNYLGRVVAGFASEHFLTKYKFPRPLMLTLILLFSC 429
Query: 423 VGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482
VGH IA+ +P+ LY AS++IGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG+VASP+G+
Sbjct: 430 VGHLLIAFNVPSGLYVASIVIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGS 489
Query: 483 YILNVKVAGQ 492
Y+LNV+VAG
Sbjct: 490 YLLNVRVAGH 499
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505269|ref|XP_003521414.1| PREDICTED: uncharacterized protein LOC100797779 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/504 (70%), Positives = 415/504 (82%), Gaps = 18/504 (3%)
Query: 1 MVVSDFGGSCCSLREMKSSSLVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLG 60
MVV+DF + LR MK+ S VLTGRWFM+FASLLIM+VAGATYMFG+YS+++KTSLG
Sbjct: 1 MVVADF--TSGGLRGMKALSY-HVLTGRWFMLFASLLIMSVAGATYMFGIYSNEVKTSLG 57
Query: 61 YDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPK 120
YDQSTLNLLSF KD+G NVGV+SGL+NE+TPP+VVL+IG IMNFFGYFMI+LAV+GRI K
Sbjct: 58 YDQSTLNLLSFFKDLGANVGVISGLVNEVTPPFVVLSIGVIMNFFGYFMIFLAVSGRIDK 117
Query: 121 PQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHA 180
PQVWQMCLYICIGANSQ+FANTGALVTCVKNFP SRGS+LG+LKG+VGLSGAI+TQLYHA
Sbjct: 118 PQVWQMCLYICIGANSQTFANTGALVTCVKNFPGSRGSILGILKGYVGLSGAIITQLYHA 177
Query: 181 FYGD-NSKALILLIAWLPAAISFVFLRTFRIIKIVRQ--ANELKIFYKMLYISLGLAGFL 237
FYGD +S+ALILLIAWLPAA+SF+FL T R++ V + ++FY +LYISLGLA FL
Sbjct: 178 FYGDHDSQALILLIAWLPAAVSFLFLPTIRLMNTVHHQPKEDNRVFYHLLYISLGLAAFL 237
Query: 238 MVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELK 297
MV+I++QNK +F R EY+ +V L LP+A+V +EEI+ K+K L D S P+LK
Sbjct: 238 MVLIVVQNKLSFSRIEYIVDGLVVFSFLLLPLAVVFREEINQLKAKTQGLTD--SPPQLK 295
Query: 298 IVTELPPQQ----------ASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFI 347
+VTE P A+ S+ + C NIF PP RGEDYTILQALFSIDMLI+FI
Sbjct: 296 VVTEAIPSSNVVEQEVVPAATTSSHEKSSCLRNIFNPPKRGEDYTILQALFSIDMLILFI 355
Query: 348 ATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYK 407
ATT G GGTLTAIDNLGQIG SLGYP +STTTFVSLVSIWNYLGRV +G+ASEI L KYK
Sbjct: 356 ATTFGAGGTLTAIDNLGQIGHSLGYPNKSTTTFVSLVSIWNYLGRVASGYASEIFLTKYK 415
Query: 408 IPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYY 467
+PRP + T VLL SCVGH IA G+PNSLY ASV+IGFCFGAQWPL+FAIISE+FGLKYY
Sbjct: 416 VPRPYMLTLVLLLSCVGHVLIALGVPNSLYLASVVIGFCFGAQWPLMFAIISEVFGLKYY 475
Query: 468 STLYNFGAVASPVGAYILNVKVAG 491
STLYNFGA ASP+G+YILNVKVAG
Sbjct: 476 STLYNFGAAASPLGSYILNVKVAG 499
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572482|ref|XP_003554397.1| PREDICTED: uncharacterized protein LOC100818752 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/503 (71%), Positives = 416/503 (82%), Gaps = 17/503 (3%)
Query: 1 MVVSDFGGSCCSLREMKSSSLVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLG 60
MVV++F + LR MK+ S VLTGRWFM+FASLLIM+VAGATYMFG+YS+++KTSLG
Sbjct: 1 MVVAEF--TSGGLRGMKAFSY-HVLTGRWFMLFASLLIMSVAGATYMFGIYSNEVKTSLG 57
Query: 61 YDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPK 120
YDQSTLNLLSF KD+G NVGV+SGL+NE+TPP+VVL+IG IMNFFGYFMI+LAV+GRI K
Sbjct: 58 YDQSTLNLLSFFKDLGANVGVISGLVNEVTPPFVVLSIGVIMNFFGYFMIFLAVSGRIAK 117
Query: 121 PQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHA 180
PQVWQMCLYICIGANSQ+FANTGALVTCVKNFP SRGS+LGLLKG+VGLSGAI+TQLYHA
Sbjct: 118 PQVWQMCLYICIGANSQTFANTGALVTCVKNFPGSRGSILGLLKGYVGLSGAIITQLYHA 177
Query: 181 FYGD-NSKALILLIAWLPAAISFVFLRTFRIIKIV-RQANE-LKIFYKMLYISLGLAGFL 237
FYG+ NS+ALILLIAWLPAA+S +FL T RI+ V Q E ++FY +LYISLGLA FL
Sbjct: 178 FYGNHNSQALILLIAWLPAAVSSLFLPTIRIMNTVLHQPKEGNRVFYHLLYISLGLAAFL 237
Query: 238 MVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELK 297
MV+I++QNK +F R EY+ +V L LP+ +V +EEI+ K+ L D S P+LK
Sbjct: 238 MVLILVQNKLSFSRIEYIVDGLVVFFFLLLPLVVVFREEINQLKANTQCLTD--SPPQLK 295
Query: 298 IVTE-LPP----QQASP----STEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIA 348
+VTE +PP Q+ P S+ + C NIF PP RGEDYTILQALFSIDMLI+FIA
Sbjct: 296 VVTEAIPPPNVEQEEVPPTTTSSHEKSSCLRNIFNPPKRGEDYTILQALFSIDMLILFIA 355
Query: 349 TTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKI 408
TT G GGTLTAIDNLGQIG SLGYP +STTTFVSLVSIWNYLGRV +G+ASEI L KYKI
Sbjct: 356 TTFGAGGTLTAIDNLGQIGHSLGYPNKSTTTFVSLVSIWNYLGRVASGYASEIFLTKYKI 415
Query: 409 PRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYS 468
PRP + T VLL SCVGH IA G+PNSLY ASVIIGFCFGAQWPL+FAIISE+FGLKYYS
Sbjct: 416 PRPYMLTLVLLVSCVGHVLIALGVPNSLYFASVIIGFCFGAQWPLMFAIISEVFGLKYYS 475
Query: 469 TLYNFGAVASPVGAYILNVKVAG 491
TLYNFGA ASP+G+YILNVKVAG
Sbjct: 476 TLYNFGAAASPLGSYILNVKVAG 498
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570778|ref|XP_003553561.1| PREDICTED: uncharacterized protein LOC100798313 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/478 (71%), Positives = 389/478 (81%), Gaps = 15/478 (3%)
Query: 24 VLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLS 83
VLTGRWFM+FASLLIMA AGA YMFG+YS+++KTSLGYDQ+TLNL SF KDVG VG++S
Sbjct: 8 VLTGRWFMLFASLLIMAAAGAAYMFGMYSNEVKTSLGYDQTTLNLFSFFKDVGATVGIIS 67
Query: 84 GLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTG 143
GL+NEITPPWVVL+IG IMNFFGYFMI+LAVTGRI KPQVWQMCLYICIG+NSQ+FANTG
Sbjct: 68 GLVNEITPPWVVLSIGVIMNFFGYFMIFLAVTGRIAKPQVWQMCLYICIGSNSQTFANTG 127
Query: 144 ALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGD-NSKALILLIAWLPAAISF 202
VTCVKNFP SRG+VLGLLKG+VGLSGAI+ QLYHAFYGD N +ALILLIAWLPAA+SF
Sbjct: 128 GTVTCVKNFPGSRGNVLGLLKGYVGLSGAIIAQLYHAFYGDHNPQALILLIAWLPAAVSF 187
Query: 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVL 262
+FL T RI V NE K+FY +LYISL LAGFLMV+II+QNK F R EY+ +V
Sbjct: 188 LFLPTIRIFNTVHHPNENKVFYHLLYISLVLAGFLMVLIIMQNKLRFTRPEYIADGVVVF 247
Query: 263 ILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTE-LPP----QQASPST----EA 313
L LP+ +V +EEI+ K+K L D+ +K+VTE +PP +Q PST
Sbjct: 248 FFLLLPLVVVFREEINQLKAKTQGLTDS-----VKVVTEVIPPPNVVEQEVPSTTTSSHE 302
Query: 314 QVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYP 373
+ C NI PP RGEDYTILQALFSIDMLI+FIATT G GG LTAIDNLGQIG SLGYP
Sbjct: 303 KSSCFGNILKPPKRGEDYTILQALFSIDMLILFIATTFGAGGALTAIDNLGQIGRSLGYP 362
Query: 374 ARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIP 433
+S TT VSL+SIWNYLGRVVAG+ASEI L KYK+PRP + T VLL SCVGH IA G P
Sbjct: 363 RKSITTCVSLLSIWNYLGRVVAGYASEIFLTKYKLPRPYMLTLVLLLSCVGHILIAIGAP 422
Query: 434 NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNVKVAG 491
NSLY ASVIIGFC GAQWPL+FAIISEIFGLKYYSTL+NFGAVASPVG+YILNVKVAG
Sbjct: 423 NSLYLASVIIGFCLGAQWPLMFAIISEIFGLKYYSTLFNFGAVASPVGSYILNVKVAG 480
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.977 | 0.800 | 0.662 | 4.9e-172 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.957 | 0.816 | 0.605 | 3.7e-151 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.508 | 0.431 | 0.351 | 1.5e-79 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.924 | 0.853 | 0.361 | 8.7e-79 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.506 | 0.426 | 0.350 | 3.6e-78 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.906 | 0.852 | 0.378 | 3.4e-77 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.924 | 0.842 | 0.350 | 2.7e-75 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.924 | 0.842 | 0.350 | 2.7e-75 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.910 | 0.853 | 0.340 | 2.6e-70 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.947 | 0.853 | 0.340 | 1.7e-68 |
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
Identities = 334/504 (66%), Positives = 391/504 (77%)
Query: 1 MVVSDFGGSCCSLREMKSSSLVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLG 60
MV + GGS MKS + + +LTGRWFM F SLLIM+ AGATYMFG+YS DIK +LG
Sbjct: 1 MVAASPGGS------MKSLT-IQILTGRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLG 53
Query: 61 YDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPK 120
YDQ+TLNLLSF KD+G NVGVL+GL+NE+TPPW +L IG+I+NFFGYFMIWLAVT RI K
Sbjct: 54 YDQTTLNLLSFFKDLGANVGVLAGLLNEVTPPWFILLIGAILNFFGYFMIWLAVTERISK 113
Query: 121 PQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHA 180
PQVW MCLYIC+GANSQSFANTG+LVTCVKNFPESRG VLG+LKG+VGLSGAI+TQLY A
Sbjct: 114 PQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRA 173
Query: 181 FYGDNSKXXXXXXXXXXXXXSFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVV 240
FYG+++K SF FLRT RI+K+ RQ NELK+FY LYISLGLA FLMVV
Sbjct: 174 FYGEDTKELILMIGWLPAIVSFAFLRTIRIMKVKRQTNELKVFYNFLYISLGLATFLMVV 233
Query: 241 IILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVT 300
II+ F + E+ GSA++V++LL LPI +VI EE L K K+ +L D P + +VT
Sbjct: 234 IIINKLSGFTQSEFGGSAAVVIVLLLLPIIVVILEEKKLWKEKQVALNDPA--P-INVVT 290
Query: 301 ELPPQQASP--------STEA--QV---CCTENIFMPPDRGEDYTILQALFSIDMLIIFI 347
E P +S S E +V C +F PP+RG+DYTILQALFS+DMLI+F+
Sbjct: 291 EKPKLDSSEFKDDDGEESKEVVEKVKTPSCWTTVFNPPERGDDYTILQALFSVDMLILFL 350
Query: 348 ATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYK 407
AT CGVGGTLTAIDNLGQIG+SLGYP RS +TFVSLVSIWNY GRVV+G SEI L KYK
Sbjct: 351 ATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWNYYGRVVSGVVSEIFLIKYK 410
Query: 408 IPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYY 467
PRPL+ T VLL SC GH IA+ +P LY ASVIIGFCFGAQWPLLFAIISEIFGLKYY
Sbjct: 411 FPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFGAQWPLLFAIISEIFGLKYY 470
Query: 468 STLYNFGAVASPVGAYILNVKVAG 491
STLYNFG+VASP+G+Y+LNV+VAG
Sbjct: 471 STLYNFGSVASPIGSYLLNVRVAG 494
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
Identities = 288/476 (60%), Positives = 350/476 (73%)
Query: 21 LVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVG 80
L+ GRWFMVFAS LIMA AGATY+FG YS DIK++LGYDQ+TLNLL F KD+G NVG
Sbjct: 10 LIHFFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVG 69
Query: 81 VLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFA 140
VLSGLI E+TP W VL IGS MNF GYFMIWL VTG++ KP+VWQMCLYICIGANSQ+FA
Sbjct: 70 VLSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFA 129
Query: 141 NTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKXXXXXXXXXXXXX 200
NTGALVTCVKNFPESRG +LGLLKG+VGLSGAI TQLY A YG +SK
Sbjct: 130 NTGALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAV 189
Query: 201 SFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASL 260
S VF+ R K+VRQ NEL +FY+ LYIS+ LA FLM + I + + F + Y SA++
Sbjct: 190 SLVFVYLIREKKVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATI 249
Query: 261 VLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQ---ASPSTEAQVC- 316
LLF+P+ + +K+E+ + K +E+ + K EL Q A + E +
Sbjct: 250 CCALLFVPLTVSVKQELEVWNMMKLPIEEPSEVKVEKPKKELDLDQDKAAKVNGEEKETK 309
Query: 317 -CTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPAR 375
C +F PP RGEDYTILQAL S DM+I+F+AT CG+G +LTA+DNLGQIG SLGYP
Sbjct: 310 SCFSTVFSPPPRGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNH 369
Query: 376 STTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNS 435
+ ++FVSLVSIWNY GRV +GF SE LL KYK+PRPL+ T VLL SC GH IA+ +P S
Sbjct: 370 TVSSFVSLVSIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGS 429
Query: 436 LYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNVKVAG 491
+Y AS+++GF FGAQ PLLFAIISE+FGLKYYSTL+N G +ASP+G+YILNV+V G
Sbjct: 430 VYIASILMGFSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTG 485
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 90/256 (35%), Positives = 142/256 (55%)
Query: 22 VGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGV 81
V + RW + A++ I + AG Y+FG S IK+SL Y+Q L+ L +KD+G +VG
Sbjct: 10 VSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSVGF 69
Query: 82 LSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFAN 141
++G ++EI P W L +G++ N GY +WL VTGR P +W MC+ I +G N +++ N
Sbjct: 70 IAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETYFN 129
Query: 142 TGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKXXXXXXXXXXXXXS 201
TGALV+ V+NFP+SRG V+G+LKGF GL GAI++Q+Y + N
Sbjct: 130 TGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVV 189
Query: 202 ---FVFLRTFRIIKIVRQANELKIFYKMLY-ISLGLAGFLMVVIILQNKYAFKRFEYVGS 257
F+R K +R + + +Y + L LA +LM V+++Q+
Sbjct: 190 VCLMFFIRPVGGHKQIRPTDGAS--FTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVF 247
Query: 258 ASLVLILLFLPIAIVI 273
++ ++L +PI + I
Sbjct: 248 TIVLFVILVVPILVPI 263
|
|
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 175/484 (36%), Positives = 278/484 (57%)
Query: 24 VLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLS 83
+L +W + AS+ I +GA+Y FG+YS+ +K++ YDQSTL+ +S KD+G N GV S
Sbjct: 3 ILRTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFS 62
Query: 84 GLI------NEITP----------PWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMC 127
GL+ N + PWVVLA+G+I F GYF+IW +VTG I KP V MC
Sbjct: 63 GLLYTYATSNRLRGRGGGIGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLIRKPPVPLMC 122
Query: 128 LYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSK 187
L++ + A SQ+F NT +V+ V+NF + G+ +G++KGF+GLSGAIL QLY +
Sbjct: 123 LFMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDPA 182
Query: 188 XXXXXXXXXXXXXSFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKY 247
S + + RI + A++ K + +SL +A +LM++IIL+N +
Sbjct: 183 SFILLLAVTPTVLSLLVMPLVRIYE-TSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTF 241
Query: 248 AFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQA 307
+ + + +L++L LP+ I R++++ +E H +++ P+
Sbjct: 242 GLSSWANIVTLVCLLVMLALPLLIA-------RRAQRDGMEKTVPHDYSPLISS--PKAT 292
Query: 308 SPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIG 367
+ ++ ++ + E+ +LQA+ + ++F+A CG+G L+ I+N+ QIG
Sbjct: 293 TSGNQSSEGDSK---VEAGLSENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIG 349
Query: 368 SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPF 427
SL Y + + VSL SIWN+LGR AG+AS+ LL K PRPLL L +GH
Sbjct: 350 ESLRYSSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLI 409
Query: 428 IAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNV 487
IA G +LY SVI+G C+G+QW L+ I SE+FG+++ T++N +VASP+G+YI +V
Sbjct: 410 IASGFQGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSV 469
Query: 488 KVAG 491
++ G
Sbjct: 470 RLIG 473
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| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 88/251 (35%), Positives = 140/251 (55%)
Query: 25 LTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSG 84
+ RW + A++ I + AG Y+FG S IK+SL Y+Q L+ L +KD+G +VG L+G
Sbjct: 13 INNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDSVGFLAG 72
Query: 85 LINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGA 144
++EI P W L +GS+ N GY +WL VTGR P +W MC+ I +G N +++ NT A
Sbjct: 73 TLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGETYFNTAA 132
Query: 145 LVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKXXXXXXXXXXXXXSFVF 204
LV+ V+NFP+SRG V+G+LKGF GL GAIL+Q+Y + +
Sbjct: 133 LVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPL 192
Query: 205 LRTFRIIKIVRQ--ANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVL 262
+ R + RQ +++ F + + + LA +LM V+++++ + ++
Sbjct: 193 MFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIAFTVVLF 252
Query: 263 ILLFLPIAIVI 273
+L +PI I I
Sbjct: 253 AILLVPIFIPI 263
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| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 180/476 (37%), Positives = 270/476 (56%)
Query: 28 RWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSG-LI 86
+W AS+ I + +GATY F +YSS +K+S YDQSTL+ +S KD+GG G++SG L
Sbjct: 7 KWVAAAASIWIQSFSGATYTFAIYSSILKSSQSYDQSTLDFVSVFKDIGGTFGIISGFLY 66
Query: 87 NEITP-------PWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSF 139
+T PWVV+ +G + F G+F IW +V G I P V MCL++ + +S F
Sbjct: 67 TAMTSKSRGFGGPWVVVFVGLVQWFVGFFFIWASVVGLIAPPPVPLMCLFVFLAGHSLPF 126
Query: 140 ANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKXXXXXXXXXXXX 199
NT +VT +NF + G+ +G+++GF+GLSGAIL QLYHA G
Sbjct: 127 FNTANVVTAARNFSQYGGTAVGIMQGFLGLSGAILIQLYHAVCGGEGNPATFILLLAIVP 186
Query: 200 XSFVFLRT-F-RIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGS 257
+FL F R+ + V +++ K + IS+ +A +LMVVI ++N R + S
Sbjct: 187 TLVMFLAMPFVRVYETVTISDK-KHLDGLSAISMIIAAYLMVVITVENVLGLSRSMQIFS 245
Query: 258 ASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCC 317
LVL+LL P+ + ++ +LR+ K+ +L + P L L P PS+
Sbjct: 246 FILVLLLLASPLLVAVR---ALRE-KRQTLSSLDG-PVLDTSALLDP----PSS------ 290
Query: 318 TENIFMPPDR--GEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPAR 375
NIF D ED IL+A+ +++ ++F+A CG+G ++N+ QIG SL Y +
Sbjct: 291 --NIFPDGDHLVAEDSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSV 348
Query: 376 STTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNS 435
+ VSL SIWN+LGR AG+ S+ L K+ PRP+ L +GH +A G+ S
Sbjct: 349 QLNSLVSLWSIWNFLGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGS 408
Query: 436 LYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNVKVAG 491
LYA SV+IG +G+QW L+ I SEIFG+++ T+Y ++A P+G+YIL+VKV G
Sbjct: 409 LYAGSVLIGMAYGSQWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIG 464
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| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 166/473 (35%), Positives = 272/473 (57%)
Query: 24 VLTGRWFMVFASLLIMAVAGATYMFG-LYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVL 82
++ RW + ++ + +VAG Y+FG S IKTSLGY+Q + LL +K++G +G +
Sbjct: 12 LVNDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFV 71
Query: 83 SGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANT 142
SG ++E++P WVVL +G+ N FGY ++WL VTG++P +W + + I +G N +++ NT
Sbjct: 72 SGALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNT 131
Query: 143 GALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYG--DNSKXXXXXXXXXXXXX 200
+LV+C+ NFPESRG V+G+LKGF GLSGAILTQ+Y F D+S
Sbjct: 132 ASLVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVL 191
Query: 201 SFVFL-RTF-RIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSA 258
+ +F+ R R + ++++L+ F + + LA +L+ +++LQ+ + + S
Sbjct: 192 ALLFIVRPVERSCRTNLRSDDLR-FLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSG 250
Query: 259 SLVLILLFLPIAIVIKEE-ISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCC 317
++++I + +P+ + IS E+ S+ + L + P + + C
Sbjct: 251 AILVIFMVVPVLVPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPC 310
Query: 318 TENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARST 377
GED+T+LQAL D +IF++ GVG +T IDNLGQI SLGY +T
Sbjct: 311 I---------GEDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYS--NT 359
Query: 378 TTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLY 437
FVSL+SI N+LGRV G+ SE++++K +PR L + V +G + A P +Y
Sbjct: 360 KIFVSLISISNFLGRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIY 419
Query: 438 AASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNVKVA 490
+++IG +GA W + A +S+IFGLK + +LYNF A P+G+++ + +A
Sbjct: 420 VVTIVIGMGYGAHWAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIA 472
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| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 166/473 (35%), Positives = 272/473 (57%)
Query: 24 VLTGRWFMVFASLLIMAVAGATYMFG-LYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVL 82
++ RW + ++ + +VAG Y+FG S IKTSLGY+Q + LL +K++G +G +
Sbjct: 12 LVNDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFV 71
Query: 83 SGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANT 142
SG ++E++P WVVL +G+ N FGY ++WL VTG++P +W + + I +G N +++ NT
Sbjct: 72 SGALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNT 131
Query: 143 GALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYG--DNSKXXXXXXXXXXXXX 200
+LV+C+ NFPESRG V+G+LKGF GLSGAILTQ+Y F D+S
Sbjct: 132 ASLVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVL 191
Query: 201 SFVFL-RTF-RIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSA 258
+ +F+ R R + ++++L+ F + + LA +L+ +++LQ+ + + S
Sbjct: 192 ALLFIVRPVERSCRTNLRSDDLR-FLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSG 250
Query: 259 SLVLILLFLPIAIVIKEE-ISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCC 317
++++I + +P+ + IS E+ S+ + L + P + + C
Sbjct: 251 AILVIFMVVPVLVPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPC 310
Query: 318 TENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARST 377
GED+T+LQAL D +IF++ GVG +T IDNLGQI SLGY +T
Sbjct: 311 I---------GEDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYS--NT 359
Query: 378 TTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLY 437
FVSL+SI N+LGRV G+ SE++++K +PR L + V +G + A P +Y
Sbjct: 360 KIFVSLISISNFLGRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIY 419
Query: 438 AASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNVKVA 490
+++IG +GA W + A +S+IFGLK + +LYNF A P+G+++ + +A
Sbjct: 420 VVTIVIGMGYGAHWAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIA 472
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| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 162/476 (34%), Positives = 259/476 (54%)
Query: 28 RWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLIN 87
+W AS+ I + +GA+Y FG+YSS +K+S YDQSTL+ +S KD+G NVG+LSGL
Sbjct: 7 KWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGILSGLFY 66
Query: 88 E------------ITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGAN 135
+ PW+V+ +G + F GY IW+A +G IP+P V MCL++ +
Sbjct: 67 TAVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCLFMFFAGH 126
Query: 136 SQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKXXXXXXXX 195
Q F NT +VT V+NF + G+ +G++KG++GLSGAIL Q+YH F G + +
Sbjct: 127 CQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNYILLLAV 186
Query: 196 XXXXXSFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYV 255
+ R V A + K + ISL + +LMVVI+++N +
Sbjct: 187 VPSLLILTLMPFVRTYDTVI-AGDKKHLNGLSAISLIIVTYLMVVILVENIIGMSMPMKI 245
Query: 256 GSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQV 315
S + +L+LL P+ + ++ + R+ + L + P + T L + + S++ +
Sbjct: 246 CSFTFLLLLLASPLLVAVRAQ---REEEHRFL--SLDFPVTERTTLLDSPKLNSSSDVKD 300
Query: 316 CCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPAR 375
T D +L+A+ + + ++F+A CG+G L I+N+ Q+G SL Y
Sbjct: 301 VMTN----------DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTV 350
Query: 376 STTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNS 435
+ VSL SIWN+LGR +G+ S+ L + PRP+ L +GH +A G+ S
Sbjct: 351 QLNSLVSLWSIWNFLGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGS 410
Query: 436 LYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNVKVAG 491
LY S+++G +G+QW L+ I SEIFG+ + T++ ++ASPVG+Y +VKV G
Sbjct: 411 LYIGSLLVGLAYGSQWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIG 466
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| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 165/485 (34%), Positives = 258/485 (53%)
Query: 14 REMKSSSLVGVLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSK 73
R + SSS + +W ++ + +++G Y F YS +K+ + +Q LN LS +K
Sbjct: 5 RSISSSSAL-----KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAK 59
Query: 74 DVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIG 133
DVG G+L+GL ++ P V+L IG GY + WL V+ I WQMC+++C+G
Sbjct: 60 DVGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMG 119
Query: 134 ANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKXXXXXX 193
NS ++ NT LVTC++NF +RG V G+LKG+VGLS AI T L A + ++
Sbjct: 120 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLL 179
Query: 194 XXXXXX---XSFVFLRTFRIIKIVRQANELKIFYKMLYI-SLGLAGFLMVVIILQNKYAF 249
+ FLR + NE ++ + I ++ +A +L I+ K
Sbjct: 180 AVVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGV 239
Query: 250 KRFEYVGSASLVLILLFLPIAIVIKEEI-SLRKSKKPSLEDANSHPELKIVTELPPQQAS 308
F V AS++L LL PIAI I SL ++ LE P L+ +E+ +
Sbjct: 240 --FS-VAFASILLFLLASPIAIPFHSFIKSLNYGEQDDLEGRIQEPLLR--SEIAAAEKE 294
Query: 309 PSTEAQVCCTENIFM--PPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQI 366
A V E P GED+TI++A+ ++D ++F++ CGVG L ++N+GQI
Sbjct: 295 VIVVAAVAAEEEEKKRKKPVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQI 354
Query: 367 GSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHP 426
G +LGY + + FVS+ SIW + GR+++G SE LKK PRPL + VG+
Sbjct: 355 GLALGYT--NVSIFVSMTSIWGFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYI 412
Query: 427 FIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILN 486
+A +PNSLY S+++G C+G + + SE+FGLKYY +YN + P+G+++ +
Sbjct: 413 LMALAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFS 472
Query: 487 VKVAG 491
+AG
Sbjct: 473 GLLAG 477
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.28.781.1 | hypothetical protein (568 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 492 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 1e-105 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 3e-10 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 7e-05 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-105
Identities = 115/248 (46%), Positives = 160/248 (64%), Gaps = 2/248 (0%)
Query: 28 RWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLIN 87
RW + A++ I + AGA Y F LYSS +K+SLGY Q LNLL +KD+G N G LSGL
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 88 EITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVT 147
E PPWVVL +G+ M F GY + WLAVTG+IP W +CL IC+ NS + NT +LVT
Sbjct: 61 EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120
Query: 148 CVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVFLRT 207
C++NFPESRG VLG+LKG+ GLS AI TQLY A +G+++ +L+LL A +P +S V L
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180
Query: 208 FRII--KIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILL 265
R K+ Q +E +F +S+ LA +L+ + IL + EY +++++LL
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240
Query: 266 FLPIAIVI 273
+P+A+ I
Sbjct: 241 LVPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 327 RGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSI 386
+DYT+ + L + +++++ L I G SLG VS+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251
Query: 387 WNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGH---PFIAYGIPNSLYAASVII 443
+N GR G S+ KI R + V S VG FI A ++
Sbjct: 252 FNGGGRPFLGALSD------KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305
Query: 444 GFCFGAQWPLLFAIISEIFGLKYYSTLYNF----GAVASPVGAYI 484
F +G L +++S+IFG + Y F AVA G I
Sbjct: 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI 350
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This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 18/231 (7%)
Query: 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNF 104
Y F L S ++ Q L+ ++ G + I + P + + +
Sbjct: 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102
Query: 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLK 164
G + L I + V ++ +Y + + GA+VT + FP +RG+V+ ++K
Sbjct: 103 LGTLLFALTFQEVI-EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMK 161
Query: 165 GFVGLSGAILTQLYHAFYGDNSKA-LILLIAWLPA----AISFVFLRTFRIIKIVRQANE 219
F GL AIL + AF+ DN+ A L+++ AI F+ L F + Q
Sbjct: 162 TFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGY--QEKH 219
Query: 220 LKIFYKMLYISLGLAGFLMV-VIILQNKYAFKRFEYVGSASLVLILLFLPI 269
L K A LM + L+ K RF Y G L+++++FLP+
Sbjct: 220 LDEEEK--------AQRLMRKGVYLKQKAPMWRFVY-GFVILIILIVFLPL 261
|
Length = 591 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.92 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.8 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.8 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.79 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.79 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.79 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.77 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.77 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.76 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.74 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.74 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.73 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.72 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.72 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.71 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.71 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.7 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.7 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.7 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.64 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.62 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.61 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.61 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.6 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.6 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.6 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.59 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.58 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.57 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.56 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.56 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.56 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.54 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.54 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.52 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.52 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.51 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.51 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.51 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.51 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.49 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.48 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.48 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.48 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.48 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.47 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.46 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.44 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.44 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.44 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.42 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.41 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.4 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.4 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.39 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.39 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.38 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.36 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.36 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.35 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.3 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.28 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.27 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.24 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.18 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.17 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.12 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.11 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.09 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.08 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.07 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.05 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.05 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.99 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.87 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.85 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.79 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.77 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.73 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.7 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.69 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.65 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.59 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.58 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.58 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.43 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.37 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.35 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.27 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.14 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.14 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.13 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.13 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.08 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.06 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.05 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.04 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.04 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.04 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 97.94 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 97.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 97.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 97.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.84 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 97.82 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 97.82 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 97.81 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 97.79 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.79 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 97.78 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 97.78 | |
| PRK10504 | 471 | putative transporter; Provisional | 97.76 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.73 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.73 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.73 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 97.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.71 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.69 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 97.69 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.69 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 97.67 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 97.67 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.67 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.66 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.65 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 97.64 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.63 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.62 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 97.62 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 97.61 | |
| PRK03699 | 394 | putative transporter; Provisional | 97.59 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.59 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.58 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.58 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 97.57 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.56 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.54 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.52 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 97.5 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.5 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 97.47 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 97.47 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 97.46 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.43 | |
| PRK12382 | 392 | putative transporter; Provisional | 97.43 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.42 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.42 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.4 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 97.38 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.37 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 97.37 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.37 | |
| PRK10054 | 395 | putative transporter; Provisional | 97.36 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.31 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 97.31 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.24 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.17 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.16 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 97.15 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.12 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.1 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.06 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 97.05 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.04 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 97.04 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 97.01 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 97.01 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 96.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.94 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 96.86 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 96.83 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.78 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 96.76 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 96.73 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 96.72 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.68 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 96.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.59 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 96.44 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 96.42 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 96.36 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.26 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 96.15 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 96.11 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 95.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.88 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 95.87 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 95.8 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 95.65 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 95.63 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 95.61 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 95.45 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.19 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.14 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 95.07 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 94.97 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.94 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 94.73 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 94.21 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.13 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 94.07 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 94.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 93.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 93.83 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 92.8 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 92.14 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 92.12 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 91.88 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 91.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 91.78 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 91.34 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 90.9 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 90.47 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 90.35 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 90.34 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 89.01 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 88.57 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 88.14 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 86.79 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 85.59 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 83.91 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 83.16 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 82.13 | |
| PRK11462 | 460 | putative transporter; Provisional | 81.68 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 81.49 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 81.2 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 80.95 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 80.2 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-71 Score=599.15 Aligned_cols=452 Identities=19% Similarity=0.261 Sum_probs=378.0
Q ss_pred ccchHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccccccceeeeccCCcHHHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
..+||++++++++++.++|+.|.|++|+++|++++|+||+|+++++..+...+++.+++|++.||+|||.++++|.++.+
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999866655556677799999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcCC
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGD 184 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~ 184 (492)
+||+++++++++.+. .++|+++++.++.|+|.++.++++++++.+|||++||+++|+.+++.|+|++++++++..++.+
T Consensus 103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888774 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhcccccccccc--------chhhh-----------------HHHHHHHHHHHHHHHHHH
Q 039263 185 NSKALILLIAWLPAAISFVFLRTFRIIKIVRQ--------ANELK-----------------IFYKMLYISLGLAGFLMV 239 (492)
Q Consensus 185 ~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~--------~~~~~-----------------~f~~~~~~~~~~~~~l~v 239 (492)
+.+.+++++++.+.+++++...++|.+|++++ +++.+ +|...+++.+++++|+++
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~ 261 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL 261 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875321 22222 677777888899999999
Q ss_pred HhhhhcccccCccchhhhhHHHH-HHHhhh-hhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccc
Q 039263 240 VIILQNKYAFKRFEYVGSASLVL-ILLFLP-IAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCC 317 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~ll~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (492)
.+++++++++++..+..++++++ ++++.| +++|.+.... ++++ ++ +++ +..+.+++. ++..+++++ .+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~-~~~~-~~----~~~--~~~~~~~~~-~~~~~~~~~-~~ 331 (591)
T PTZ00207 262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDG-KRPH-DD----SDG--KAKEHVEAG-EEVSAAEDK-VV 331 (591)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-CCcC-CC----ccc--ccccccccc-ccccccccc-cc
Confidence 99999999999999999988777 778888 7888876211 1111 00 000 000000000 000000000 01
Q ss_pred ccccc-CCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhhc-CC-CCCccch-hhhHHHhhhhhhhc
Q 039263 318 TENIF-MPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSL-GY-PARSTTT-FVSLVSIWNYLGRV 393 (492)
Q Consensus 318 ~~~~~-~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~sl-g~-~~~~~~~-~Vsl~Si~N~~GRl 393 (492)
.++.+ .+|++++ |++|.+++.|||++|+.++|+.|+|++++||++||++|+ |+ ++.+.++ +|+++|+||++||+
T Consensus 332 ~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl 409 (591)
T PTZ00207 332 ETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRL 409 (591)
T ss_pred cccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHH
Confidence 11122 3366665 999999999999999999999999999999999999999 77 3332233 89999999999999
Q ss_pred ccchhhHHHhhhcC----CCchHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcc
Q 039263 394 VAGFASEILLKKYK----IPRPLLFTFVLLFSCVGHPFIAYGIP-NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYS 468 (492)
Q Consensus 394 ~~G~lSD~~~~~~~----~~R~~~l~i~~~l~~~~~ll~~~~~~-~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g 468 (492)
.+|++| .+.+|++ +||+.+++++++ +++++++++...+ ..||++++++|+|||.+|++.|++++|+|| ||+|
T Consensus 410 ~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g 486 (591)
T PTZ00207 410 CMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPA 486 (591)
T ss_pred HHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchH
Confidence 999998 4445554 999999999999 8888888777776 799999999999999999999999999999 9999
Q ss_pred cccccceehhhHHHHHHhhhccCC
Q 039263 469 TLYNFGAVASPVGAYILNVKVAGQ 492 (492)
Q Consensus 469 ~nyg~~~la~~~gs~l~~~~l~g~ 492 (492)
+|||++.+++|+|+++||++++|+
T Consensus 487 ~~yN~~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 487 KHYNFCFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred HHhhHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-54 Score=420.74 Aligned_cols=245 Identities=47% Similarity=0.842 Sum_probs=235.7
Q ss_pred hHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHHH
Q 039263 28 RWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGY 107 (492)
Q Consensus 28 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy 107 (492)
||+++++++++|+++|+.|.||+|||+||+++|+||+|+|++++++|+|.++|+++|+++||+|||.++++|+++.++||
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcCCChh
Q 039263 108 FMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSK 187 (492)
Q Consensus 108 ~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~ 187 (492)
+++|++++++++++++|++|++.+++++|++|+||++++||+||||++||+|+|++|+++||||+||+++|+++|++|++
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccc----ccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHH
Q 039263 188 ALILLIAWLPAAISFVFLRTFRIIKIV----RQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263 (492)
Q Consensus 188 ~fllfla~~~~~v~~~~~~~i~~~~~~----~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
+|++|+++.|.++++++++++|.+|++ ++++++++|.....+++++++|+++.++++++.++++..+.....++++
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l 240 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL 240 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999863 3456688898888888999999999999999999999999999999899
Q ss_pred HHhhhhhhh
Q 039263 264 LLFLPIAIV 272 (492)
Q Consensus 264 ll~~p~~~~ 272 (492)
+|++|+++|
T Consensus 241 lL~~Pl~i~ 249 (250)
T PF06813_consen 241 LLLLPLAIP 249 (250)
T ss_pred HHHhhhhcc
Confidence 999999876
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-25 Score=222.96 Aligned_cols=339 Identities=22% Similarity=0.291 Sum_probs=234.2
Q ss_pred chHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFF 105 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~ 105 (492)
+||..+++.+...++.|..|.|+.+.|++++++|+|.+|++++.....++.. ..++.|.+.||+|+|.++.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 4788899999999999999999999999999999999999998666667765 489999999999999999999999988
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcCCC
Q 039263 106 GYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDN 185 (492)
Q Consensus 106 Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~ 185 (492)
|+.++... .+.|.+.....+.|.+.+..+.++.....+|||++||++.++.....++|+.+..++...+.+.
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~- 152 (377)
T TIGR00890 81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINL- 152 (377)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhc-
Confidence 87554432 2356565555578888888888888889999999999999999888888877765544432210
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHH
Q 039263 186 SKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILL 265 (492)
Q Consensus 186 ~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (492)
.+-+..|. + .++..++..
T Consensus 153 -------------------------------~~~~~~f~----~---~~~~~~~~~------------------------ 170 (377)
T TIGR00890 153 -------------------------------EGVPAAFI----Y---MGIIFLLVI------------------------ 170 (377)
T ss_pred -------------------------------ccHHHHHH----H---HHHHHHHHH------------------------
Confidence 00011111 1 000000000
Q ss_pred hhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHH
Q 039263 266 FLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLII 345 (492)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWll 345 (492)
.+.....++ ++++. ++++ + + .+.++.+.++.+|++++|.+
T Consensus 171 -~~~~~~~~~-----------------~~~~~-~~~~-------~------------~--~~~~~~~~~~~~~~~~~~~~ 210 (377)
T TIGR00890 171 -VLGAFLIGY-----------------PPGQL-IKTN-------I------------E--VSVKDYTVWEMLRTPQFWVL 210 (377)
T ss_pred -HHHHHheec-----------------Cchhc-cccC-------c------------c--cchhhhhHHHHHcCccHHHH
Confidence 000000010 00000 0000 0 0 00012356789999999999
Q ss_pred HHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHH
Q 039263 346 FIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGH 425 (492)
Q Consensus 346 f~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ 425 (492)
+..+++.......+.+...++.++++.++.+.+...++.++.+..||+.+|+++||++||+ .+.+..+++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~~~~~~~~~~ 284 (377)
T TIGR00890 211 YLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK------TMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHH
Confidence 9888776655555555566677788877666777889999999999999999999996643 2334444555554
Q ss_pred HHHHhcC--Cc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 426 PFIAYGI--PN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 426 ll~~~~~--~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
++....+ .. .++....+.|+++|..++++|+++.|.++.++.++.+|+......+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 343 (377)
T TIGR00890 285 AAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVA 343 (377)
T ss_pred HHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHH
Confidence 4433322 11 23345667899999999999999999999999999888865544333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-23 Score=223.37 Aligned_cols=384 Identities=21% Similarity=0.274 Sum_probs=255.0
Q ss_pred chHHHHHHHHHH-HHhhCcccccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLI-MAVAGATYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 27 ~Rw~~l~a~~~i-~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
--|.+.+++.++ ..+-|..+.++++-+++++.++-+.+|.+++ ++...+.-..+++.+.+.||+|.|.+.++|+++.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 358888888766 4566889999999999999999999998887 55555555569999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHH-HHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMC-LYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~-~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
+|+.+-..+ .++|+++ .|+++.|+|.++.|..+++...++|++||++|+|+..++.|+|..+++.+.+.+++
T Consensus 123 ~g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~ 195 (509)
T KOG2504|consen 123 LGLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLS 195 (509)
T ss_pred HHHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence 997643322 2367765 68999999999999999999999999999999999999999999999888777665
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHH
Q 039263 184 DNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263 (492)
Q Consensus 184 ~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
. .+....+.....+. +-. +..-
T Consensus 196 ~--------------------------------~G~r~~~l~~~~~~-------l~~-------------------~~~~ 217 (509)
T KOG2504|consen 196 K--------------------------------YGWRGALLIFGGIS-------LNV-------------------LVAG 217 (509)
T ss_pred H--------------------------------hCcHHHHHHHHHHH-------HHH-------------------HHHH
Confidence 3 11122222111110 000 0000
Q ss_pred HHhhhhhhhhHHh--hhhccCCCCccccCCCCCccc-cccCCCCCCCCCCccccccccccccCCCC--CCCccc---HHH
Q 039263 264 LLFLPIAIVIKEE--ISLRKSKKPSLEDANSHPELK-IVTELPPQQASPSTEAQVCCTENIFMPPD--RGEDYT---ILQ 335 (492)
Q Consensus 264 ll~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~t---~~~ 335 (492)
.+.-|.....+++ .+.+.++ .+.+..+.+.... .+++... +. .+ ++.+...++.+++.+ ..+..- -++
T Consensus 218 ~~~rp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 293 (509)
T KOG2504|consen 218 ALLRPLSPPKKPNEEKDLRNSA-ASVESTPKPVELRISERDSGL-KK-LS-LSNLATLKRGPDKWRNSPLQAFLSMLDLS 293 (509)
T ss_pred HHcCCCCcCCCchhhhhhcccc-ccccccccccccccccCCCCC-Cc-cc-ccchhhhhhCCccccccchhhhhhhhhHH
Confidence 0111111111000 0000000 0000000000000 0000000 00 00 000000000001000 011111 368
Q ss_pred HhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHH
Q 039263 336 ALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFT 415 (492)
Q Consensus 336 ~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~ 415 (492)
++|++.||.+.+...+....-..-..-+...+++.|+++.+++..++++++.|..||++.|++.|+-. +++.+...
T Consensus 294 ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~----~~~~~~~~ 369 (509)
T KOG2504|consen 294 LLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG----IRALVLFL 369 (509)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc----cchHHHHH
Confidence 99999999998877776665555555677888899999999999999999999999999999999874 24455555
Q ss_pred HHHHHHHHHHHHHHhc-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHH
Q 039263 416 FVLLFSCVGHPFIAYG-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAY 483 (492)
Q Consensus 416 i~~~l~~~~~ll~~~~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~ 483 (492)
++.+...++.+..... +...+...+++.|++.|...++.|.++.|+.|+.+++.-||+..+...++..
T Consensus 370 ~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l 438 (509)
T KOG2504|consen 370 LTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL 438 (509)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence 6666666665443332 2346788888999999999999999999999999999999997665555543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=189.78 Aligned_cols=358 Identities=12% Similarity=0.130 Sum_probs=199.6
Q ss_pred hHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHH
Q 039263 28 RWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFG 106 (492)
Q Consensus 28 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~G 106 (492)
+|..........+..-..|.++.+.|++++++|+|++|.+++.+...++..+ .++.|++.||+|+|.++.++.++..++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3444444444444444478999999999999999999999887666676665 599999999999999999988888777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCC
Q 039263 107 YFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDN 185 (492)
Q Consensus 107 y~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~ 185 (492)
..+.... ++ .+.+.+..++.|.+.+.. ..+.....+||| ++||++.|+..+...+++.+-..+.
T Consensus 115 ~~~~~~~-----~s--~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~------- 179 (476)
T PLN00028 115 VFCMSLV-----SS--ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM------- 179 (476)
T ss_pred HHHHHHh-----cC--HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH-------
Confidence 6543321 22 344444444455554432 333444678998 4799999997665555544432211
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHH
Q 039263 186 SKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILL 265 (492)
Q Consensus 186 ~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll 265 (492)
|.+...+ ...-. . .....+..+.+ . ++..++.. ++..
T Consensus 180 -----------~~i~~~~----~~~~~---~--~~~gWr~~f~i-~--g~l~l~~~--------------------l~~~ 216 (476)
T PLN00028 180 -----------PLVFPLI----KDAGA---P--SFTAWRIAFFV-P--GLLHIIMG--------------------ILVL 216 (476)
T ss_pred -----------HHHHHHH----HhcCC---c--chhhhHHHHHH-H--HHHHHHHH--------------------HHHH
Confidence 1111000 00000 0 00112211111 0 00000000 0000
Q ss_pred hhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHH
Q 039263 266 FLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLII 345 (492)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWll 345 (492)
..+ + + .|++. . ++. ++ + .+.++.+....+++.++++++|++
T Consensus 217 ~~~-----~-~---------------~p~~~-~-~~~----~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 257 (476)
T PLN00028 217 TLG-----Q-D---------------LPDGN-Y-REL----KK-S-----------GTMPKDSFSKVLRYGVTNYRTWIL 257 (476)
T ss_pred HHc-----C-c---------------CCCCc-h-hhH----Hh-c-----------CccccccHHHHHHHHHcCchhHHH
Confidence 000 0 0 00000 0 000 00 0 000000011246788999999999
Q ss_pred HHHHHhhccceeEEecchhHHH-hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCC-CchHHHHHHHHHHHH
Q 039263 346 FIATTCGVGGTLTAIDNLGQIG-SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKI-PRPLLFTFVLLFSCV 423 (492)
Q Consensus 346 f~~~~~~~g~Gl~~i~n~~~I~-~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~-~R~~~l~i~~~l~~~ 423 (492)
++.+++..+....+.+....+. +..|++..+++...++..+++.+||+.+|+++||+.||++. .|.+.+.+..++..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i 337 (476)
T PLN00028 258 ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGV 337 (476)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Confidence 9887766555544444455554 44688877788888999999999999999999999987543 355555444444444
Q ss_pred HHHHHHhcCCc-hhHHHHHHHHh----hhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHHHhh
Q 039263 424 GHPFIAYGIPN-SLYAASVIIGF----CFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNV 487 (492)
Q Consensus 424 ~~ll~~~~~~~-~l~~~~~liG~----~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l~~~ 487 (492)
..+++...... ...+..++.++ +.|..+++.| |+ ++|+.|+++|++..+..+|+.+...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~-~~~~~g~~~g~~~~~g~lg~~i~~~ 401 (476)
T PLN00028 338 FCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----FV-SRRSLGVISGLTGAGGNVGAVLTQL 401 (476)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----cc-ChhhchhhhhhhhccccHHHHHHHH
Confidence 33332222111 12222333344 4455555444 43 5689999999987766666655443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=184.04 Aligned_cols=155 Identities=14% Similarity=0.156 Sum_probs=110.1
Q ss_pred hhhccccccccccchHHHHHHHHHHHHhh-CcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCC
Q 039263 14 REMKSSSLVGVLTGRWFMVFASLLIMAVA-GATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITP 91 (492)
Q Consensus 14 ~~~~~~~~~~~~~~Rw~~l~a~~~i~l~~-Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~G 91 (492)
.||++...+.. .-||..+...++...+. -..+.++.+.|++++++|+|..|.+++.+...++.. ..++.|++.||+|
T Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g 86 (434)
T PRK11663 8 TDKHEIDARYR-YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSN 86 (434)
T ss_pred CCHHHHHhHhH-HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcC
Confidence 45555554442 23444444444333333 335688899999999999999999998666666654 5899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhh
Q 039263 92 PWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLS 170 (492)
Q Consensus 92 pr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLs 170 (492)
+|.++.++.++..++..++... + ++|.+++...+.|.+.+..+.+......+|||+ +||++.|+.....++|
T Consensus 87 ~r~~~~~~~~~~~~~~~~~~~~-----~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 159 (434)
T PRK11663 87 ARYFMGIGLIATGIINILFGFS-----S--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG 159 (434)
T ss_pred CchhHHHHHHHHHHHHHHHHHH-----h--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999888886544322 2 245555544556666666677778888999985 6999999988888877
Q ss_pred HHHHHH
Q 039263 171 GAILTQ 176 (492)
Q Consensus 171 a~i~s~ 176 (492)
+.+-..
T Consensus 160 ~~~~~~ 165 (434)
T PRK11663 160 GALIPL 165 (434)
T ss_pred HHHHHH
Confidence 766543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=183.38 Aligned_cols=363 Identities=16% Similarity=0.178 Sum_probs=215.3
Q ss_pred cchHHHHHHHHHHHHh-hCcccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAV-AGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~-~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
..||..+.++.+.+.. .+..+.++.+-+++++.+|+|+++.+++.+...++. ..+++.|++.||+|+|.+++++.++.
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 3479888887777653 445678899999999999999999999755444443 45889999999999999999898888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHH-HHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCL-YICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~-~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
.++..+... . ++ .|.++. ...+.|.+.+.....+.....+|||++||++.|+.....++++.+...+.....
T Consensus 95 ~~~~~~~~~--~---~~--~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 95 SLGMILASF--S---SN--VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred HHHHHHHHH--h---hh--HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777654322 2 22 444433 345667777766566677778999999999999988888777666533222111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHH
Q 039263 183 GDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVL 262 (492)
Q Consensus 183 ~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 262 (492)
+ . .+-...|. + . ++..++..+ ..
T Consensus 168 ~--------------------------~------~gwr~~f~----~-~--~~~~~~~~v------------------~~ 190 (455)
T TIGR00892 168 E--------------------------S------FGWRGSFL----I-L--GGLLLHCCV------------------CG 190 (455)
T ss_pred H--------------------------H------hChHHHHH----H-H--HHHHHHHHH------------------HH
Confidence 0 0 00012222 1 0 000000000 00
Q ss_pred HHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhH
Q 039263 263 ILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDM 342 (492)
Q Consensus 263 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~F 342 (492)
.+..| .+++.+ ..+++ +++ ..+++ . +.++. . ..+..+...+.-..+.+++++|
T Consensus 191 -~~~~~----~~~~~~--~~~~~------~~~--~~~~~------~-~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~ 243 (455)
T TIGR00892 191 -ALMRP----VGPSQR--VSKSK------SKE--GLPPD------G-STKKL-S----KKSTAEKINRFLDFSLFTHRGF 243 (455)
T ss_pred -HHhCC----CCcccc--ccccc------ccc--cCCCC------C-ccccc-c----ccchhhhhhhhcchHHhcCchH
Confidence 00000 000000 00000 000 00000 0 00000 0 0000000011112468899999
Q ss_pred HHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHH
Q 039263 343 LIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSC 422 (492)
Q Consensus 343 Wllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~ 422 (492)
|.+....++....-.+......++.++.|+++.+.+...++..+.+.++|+..|.++||...+ ..|...+.+..++..
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 244 LVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR--PHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--HHHHHHHHHHHHHHH
Confidence 988776655444334444556677778888888888889999999999999999999973211 122222322233333
Q ss_pred HHHHHHHhc-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 423 VGHPFIAYG-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 423 ~~~ll~~~~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
++.++.... ....+++..++.|+++|......++++.|.+..++.|+.+|+..+..-+|
T Consensus 322 l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 381 (455)
T TIGR00892 322 LTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCA 381 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHH
Confidence 333332222 23345667778899999999999999999999889999988875544443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=182.15 Aligned_cols=360 Identities=11% Similarity=0.009 Sum_probs=199.9
Q ss_pred cchHHHHHHHHHHHHhhC-cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAG-ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
+.+|..+....+.-...- .-+.+++-.|++++++|+|.+|++++.++..++.. ..++.|.+.||+|+|.++.++.++.
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 344544444433333322 35778888999999999999999998666666654 4899999999999999998888877
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
+++...+.....+.. .+++.+...-++.|.+.+....++.+...+|||+ +||++.|+......+|+++-..+...
T Consensus 105 ~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~-- 180 (467)
T PRK09556 105 AICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW-- 180 (467)
T ss_pred HHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH--
Confidence 776655554333332 2366676666777888777778888889999985 79999999887777777665332211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHH
Q 039263 183 GDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVL 262 (492)
Q Consensus 183 ~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 262 (492)
..+..- ..+....|. . . ++..++..+
T Consensus 181 ------------------------~~~~~~---~~~~~~~f~-~--~----g~~~~~~~i-------------------- 206 (467)
T PRK09556 181 ------------------------GANYFF---DGHVIGMFI-F--P----SIIALIIGF-------------------- 206 (467)
T ss_pred ------------------------HHHhhc---cCcchhHHH-H--H----HHHHHHHHH--------------------
Confidence 000000 000011111 0 0 000000000
Q ss_pred HHHhhhhhhhhHHhhh--hccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcch
Q 039263 263 ILLFLPIAIVIKEEIS--LRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSI 340 (492)
Q Consensus 263 ~ll~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~ 340 (492)
+.....+++++ .+.+++ +.. .++ . +++++ . ++ +++....+.-.++.+|++
T Consensus 207 -----~~~~~~~~~p~~~~~~~~~-------~~~-----~~~-----~-~~~~~-~--~~--~~~~~~~~~~~~~~l~~~ 258 (467)
T PRK09556 207 -----IGLRYGSDSPEELGWGKAE-------EIF-----GEP-----I-SEEDK-E--TE--STDMTKWQIFVEYVLKNP 258 (467)
T ss_pred -----HHHHhCCCChhhcCCCChh-------hcc-----cCc-----c-chhhh-c--cc--cccCcHHHHHHHHHHcCh
Confidence 00000011110 000000 000 000 0 00000 0 00 000000011123489999
Q ss_pred hHHHHHHHHHhhccceeEEecchhHHH-hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQIG-SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~I~-~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
.+|.+++..++..+.-..+.+-...+. +.+|++..+++...++..+++.+|++.+|+++||++||+ .........
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~----~~~~~~~~~ 334 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR----ALVACIALA 334 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----hHHHHHHHH
Confidence 999999877765443222222233334 357888777778888899999999999999999997653 111111111
Q ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccce
Q 039263 420 FSCVGHPFIAYGIPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 420 l~~~~~ll~~~~~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
......+++...... .+++...+.|++..+........+.|.+..++.|+-.|+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~ 391 (467)
T PRK09556 335 LIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKG 391 (467)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 111111112222222 23455556675433333344467779999889998888864
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=177.40 Aligned_cols=340 Identities=12% Similarity=0.068 Sum_probs=210.8
Q ss_pred ccccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHH
Q 039263 23 GVLTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGS 100 (492)
Q Consensus 23 ~~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~ 100 (492)
++.++||..++.+.++..+.+. .+.++...|++++++|+|+.|.+++.+...++..+ .++.|++.||+|+|.++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3445899999999888888877 68899999999999999999999987777777655 789999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHH
Q 039263 101 IMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYH 179 (492)
Q Consensus 101 vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~ 179 (492)
++..++..+.... + +.+.+.....+.|.+.+..+++......++|| ++||++.|+...+..+|+.+-..+..
T Consensus 88 ~~~~~~~~~~~~~-----~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 88 ALFGLFSLATAQA-----W--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV 160 (406)
T ss_pred HHHHHHHHHHHHh-----c--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776543321 2 24556666677888888888888888999997 57999999987777666655432221
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhH
Q 039263 180 AFYGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSAS 259 (492)
Q Consensus 180 ~~f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~ 259 (492)
... . ..+.+..|. +. . +..++..
T Consensus 161 ~~~--------------------------~------~~~~~~~~~----~~-~--~~~~~~~------------------ 183 (406)
T PRK11551 161 LAA--------------------------G------DAAWRHIFY----VG-G--VGPLLLV------------------ 183 (406)
T ss_pred HHc--------------------------c------ccCHHHHHH----HH-H--HHHHHHH------------------
Confidence 110 0 000011111 10 0 0000000
Q ss_pred HHHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcc
Q 039263 260 LVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFS 339 (492)
Q Consensus 260 ~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t 339 (492)
.+..... +|+.+.. +++ .+ + ++ +++. .....+..+.
T Consensus 184 -~~~~~~l------~~~~~~~-----------~~~------~~----~----~~---------~~~~---~~~~~~~~~~ 219 (406)
T PRK11551 184 -PLLMRWL------PESRAFA-----------QAA------GA----G----KQ---------RAPV---LRALFGEGRA 219 (406)
T ss_pred -HHHHHhC------CCChhHH-----------hcc------Cc----c----hh---------hhhh---HHHHhhhhhh
Confidence 0000001 1100000 000 00 0 00 0000 0000011112
Q ss_pred hhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
+..+.++..+++....-..+.+...++.++.|.++.+.+...++..+.+..||+..|.++||+++|+ .+.+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~~~~ 293 (406)
T PRK11551 220 TATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR------VVLLIYA 293 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHH
Confidence 2334444433333222223344456667778888778888889999999999999999999996542 3333333
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 420 FSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 420 l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
.+.++.+.+.... ...+++...+.|++.++..+..++++.|.+..++.|+..|+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 351 (406)
T PRK11551 294 GILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVA 351 (406)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHH
Confidence 3444433332222 22455667778999988999999999999999998888887543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=171.49 Aligned_cols=338 Identities=16% Similarity=0.153 Sum_probs=198.2
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
...++...|.+++++|+|..|.+++.....++..+ .++.|++.||+|+|.++.+|.++..++..+.... + +.
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~--~~ 83 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T--SL 83 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h--hH
Confidence 56778888999999999999999986666666654 8999999999999999999999888887665533 2 25
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISF 202 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~ 202 (492)
|.+.....+.|.+.+..+........+++|+ +||++.|+......+++.+-..+.......
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------ 145 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE------------------ 145 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh------------------
Confidence 6666677778888888888888889999985 699999998888777766654222111110
Q ss_pred hhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
. .+....|. + .++..++..+ + .....+++.+..+.
T Consensus 146 -------~------~~~~~~~~----~---~~~~~~~~~~-------------------~------~~~~~~~~~~~~~~ 180 (379)
T TIGR00881 146 -------L------YSWHWVFI----V---PGIIAIIVSL-------------------I------CFLLLRDSPQSCGL 180 (379)
T ss_pred -------c------CCchhHHH----H---HHHHHHHHHH-------------------H------HheeeCCCcccccc
Confidence 0 00011111 1 0000000000 0 00001111100000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
+ + +++++ .+ +. +++. +.+++..+..+...++.+|++.+|.+.+..++.......+...
T Consensus 181 ~----~-~~~~~-----~~------~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (379)
T TIGR00881 181 P----P-AEEMP-----NE------EP--DGDA----EKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDW 238 (379)
T ss_pred C----c-cccCc-----cc------cc--cccc----ccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000 00 00 0000 0000011112235678899999999887766544332222222
Q ss_pred hhHHH-hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC---CchhHH
Q 039263 363 LGQIG-SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI---PNSLYA 438 (492)
Q Consensus 363 ~~~I~-~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~---~~~l~~ 438 (492)
...+. +.+|.++.+.+...++..+.+.+||++.|+++||..++++. ...........++...+.... .....+
T Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
T TIGR00881 239 SPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG---PLAVFFMALIIVSLLVYWLNPAANPLMDLI 315 (379)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch---HHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 33333 34677777777788999999999999999999987544321 111122222222222221111 112334
Q ss_pred HHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceeh
Q 039263 439 ASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA 477 (492)
Q Consensus 439 ~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la 477 (492)
...+.|+..++.....+.++.|.+..++.|+..++....
T Consensus 316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 354 (379)
T TIGR00881 316 CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFF 354 (379)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence 455667766666777788999999999989888876443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=174.29 Aligned_cols=345 Identities=14% Similarity=0.018 Sum_probs=203.7
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
.+.++...|.+++++|+|..|.+++.....++... .++.|.+.||+|+|.++.++.++..++..++... + ++
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~--~~ 82 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----G--AY 82 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----c--CH
Confidence 46678888999999999999999986666676654 8899999999999999999998888887655432 2 25
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISF 202 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~ 202 (492)
|.+....++.|.+.+..+++......+++|+ +||++.|+.....++|+.+-..+...+.+.
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------------ 144 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH------------------ 144 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh------------------
Confidence 6666667778888888888888889999985 799999998888887766654433222211
Q ss_pred hhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
. +.+..|. + .++..++..+ +.....+++.+..+
T Consensus 145 --------~------~~~~~~~----~---~~~~~~~~~~-------------------------~~~~~~~~~~~~~~- 177 (399)
T TIGR00893 145 --------F------SWQWAFI----I---EGVLGIIWGV-------------------------LWLKFIPDPPQKAK- 177 (399)
T ss_pred --------C------CchHHHH----H---HHHHHHHHHH-------------------------HhhheecCCCCccc-
Confidence 0 0011111 1 0000000000 00000011100000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
. .+ +++++. . . + .... + ..++++++....+.++.+|++++|.+++..++.......+...
T Consensus 178 --~-~~-~~~~~~-~--~-~----~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (399)
T TIGR00893 178 --W-LT-EEEKYI-V--V-G----GLLA-E-------QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTW 237 (399)
T ss_pred --c-CC-HHHHhh-c--c-h----hhcc-c-------cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0 00 000000 0 0 0 0000 0 0000011112335688999999999998887766665555555
Q ss_pred hhHHHh-hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc--CCchhHHH
Q 039263 363 LGQIGS-SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG--IPNSLYAA 439 (492)
Q Consensus 363 ~~~I~~-slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~--~~~~l~~~ 439 (492)
..++.+ ..+.++.+.+...++..+.+.+|++..|.++||++||+.................+....... ......+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (399)
T TIGR00893 238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALA 317 (399)
T ss_pred HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 565554 467776677778899999999999999999999988751110000111111111111111111 12223333
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 440 SVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 440 ~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
...++....+......++++|.+..++.|+.+++.....-+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 359 (399)
T TIGR00893 318 LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLG 359 (399)
T ss_pred HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHh
Confidence 344444333378889999999999999998888864443333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=171.84 Aligned_cols=318 Identities=13% Similarity=0.075 Sum_probs=196.8
Q ss_pred HHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHH
Q 039263 35 SLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWL 112 (492)
Q Consensus 35 ~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~ 112 (492)
...+.+.... .+..+...|++++++|+|.+|.+++.+...++. ...++.|++.||+|+|.++.+|.++..+|..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~- 92 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE- 92 (393)
T ss_pred HHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH-
Confidence 4444444444 477999999999999999999999755555554 4589999999999999999999999999976433
Q ss_pred HHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHH
Q 039263 113 AVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILL 192 (492)
Q Consensus 113 ~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllf 192 (492)
..++ ++.+.+.-++.|.|.+..+........|+||+|||++.|+..++..+|+.+-..+....
T Consensus 93 ----~a~~--~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l----------- 155 (393)
T PRK09705 93 ----LYPQ--SALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWL----------- 155 (393)
T ss_pred ----HCcc--hHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 2333 45566667888999998888777777899999999999987766555544443221110
Q ss_pred HHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhh
Q 039263 193 IAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIV 272 (492)
Q Consensus 193 la~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~ 272 (492)
..+. .+.+..+. . .. +..++.. . ...+
T Consensus 156 ---------------~~~~-----~~w~~~~~----~-~~--~~~~~~~-------------------~---~~~~---- 182 (393)
T PRK09705 156 ---------------VQHS-----ETWYQTLA----W-WA--LPAVVAL-------------------F---AWWW---- 182 (393)
T ss_pred ---------------HHhc-----CCHHHHHH----H-HH--HHHHHHH-------------------H---HHHH----
Confidence 0000 00011111 0 00 0000000 0 0000
Q ss_pred hHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhh
Q 039263 273 IKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCG 352 (492)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~ 352 (492)
.. + + +|++ ++ +++ .+.++.++++++|.+.+.+++.
T Consensus 183 ~~------~---~------~~~~-----~~--------------------~~~-----~~~~~~l~~~~~~~l~~~~~~~ 217 (393)
T PRK09705 183 QS------A---R------EVAS-----SH--------------------KTT-----TTPVRVVFTPRAWTLGVYFGLI 217 (393)
T ss_pred Hh------c---C------CCcc-----cc--------------------CCC-----cCCcccccCHhHHHHHHHHHHH
Confidence 00 0 0 0000 00 000 0123567888999887766554
Q ss_pred ccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC
Q 039263 353 VGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI 432 (492)
Q Consensus 353 ~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~ 432 (492)
...-..+.+-..++.++.|.+..+++...+++++++.+||+.+|.++||.+||+ .+.+...+..++.+++...+
T Consensus 218 ~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~------~~~~~~~l~~~~~~~~~~~~ 291 (393)
T PRK09705 218 NGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK------LLMLALVLQLVGFCGFIWLP 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHHHHHHHcc
Confidence 333223334456666778888778888999999999999999999999986542 33334444444443332212
Q ss_pred CchhHHHHHHHHhhhcchhhhHHHHHHHhhcC-CCcccccccc
Q 039263 433 PNSLYAASVIIGFCFGAQWPLLFAIISEIFGL-KYYSTLYNFG 474 (492)
Q Consensus 433 ~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~-k~~g~nyg~~ 474 (492)
.....+...+.|++.|..+......+.|.+.+ ++-|+.+|++
T Consensus 292 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~ 334 (393)
T PRK09705 292 LQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFM 334 (393)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 22222334567888998888887788888864 4556666653
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=169.03 Aligned_cols=366 Identities=14% Similarity=0.124 Sum_probs=210.0
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.+++|..+..+.+..++.|. .+.++.+.|.+.+++|++..|.+++.....++..+ .++.|.+.||+|+|.++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34567777777777777765 57788899999999999999999886666666654 78999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
..+++.++... + +.+.+.....+.|.+.+..+.+......+++|+ +||++.|+......+|+.+-..+...+
T Consensus 92 ~~~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 92 FSVFTLLCALA-----T--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHHHHHHHHc-----c--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 88887654422 2 245566667778888888888888889999985 699999998877777766554443332
Q ss_pred cCC-ChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHH
Q 039263 182 YGD-NSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASL 260 (492)
Q Consensus 182 f~~-~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~ 260 (492)
.+. +....+++.++.+.+..++...+++..+..
T Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 198 (398)
T TIGR00895 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDF---------------------------------------------- 198 (398)
T ss_pred hhcccceeehhhhhhHHHHHHHHHHHhCCCCChH----------------------------------------------
Confidence 221 000011111111111111111111000000
Q ss_pred HHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHH----H
Q 039263 261 VLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQ----A 336 (492)
Q Consensus 261 ~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~----~ 336 (492)
..+.+.+.. ++..+ +.+++.. .++ ++ +.++ +..+++ .....++ .
T Consensus 199 -----------~~~~~~~~~---~~~~~-~~~~~~~---~~~----~~-~~~~------~~~~~~---~~~~~~~~~~~~ 246 (398)
T TIGR00895 199 -----------LVSKRPETV---RRIVN-AIAPQMQ---AEA----QS-ALPE------QKATQG---TKRSVFKALFQG 246 (398)
T ss_pred -----------HHhcCHHHH---HHHHH-HHHHhcc---ccc----cc-cccc------cccccc---hhhHHHHHHhcc
Confidence 000000000 00000 0000000 000 00 0000 000000 0111122 1
Q ss_pred hcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH
Q 039263 337 LFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF 416 (492)
Q Consensus 337 l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i 416 (492)
.+.+.+|.++..+++.......+.+....+.+..+.+..+.+...++.+++..+|++++|.++||+++| ..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ 320 (398)
T TIGR00895 247 KTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR------VTALL 320 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH------HHHHH
Confidence 223445555555444332221222223355556788777777888999999999999999999999653 12222
Q ss_pred HHHHHHHHHHHHH-hcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 417 VLLFSCVGHPFIA-YGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 417 ~~~l~~~~~ll~~-~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
..+..+...++.. ......+++..++.|+++|.......+++.|.+..++-|+-+|+.....-+|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 386 (398)
T TIGR00895 321 LLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLG 386 (398)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 2233356677788899999999999999999999888888777654433333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-17 Score=173.21 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
+++|..+.+..+....... .+.++...|.++++ |+|+.+.+++.+...++.. ..++.|.+.||+|+|.++++|.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~ 103 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 103 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence 3456665555544443333 24578888999988 9999999998666666654 5899999999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHH
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQ 176 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~ 176 (492)
.++...+...-.. . .+.+.+.....+.|.+.+..+........+|||+ +||++.|+......+++.+..+
T Consensus 104 ~i~~~~~~~~~~~--~-~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 104 AAVMLFMGFVPWA--T-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174 (452)
T ss_pred HHHHHHHHhhhcc--c-ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 8777654432111 1 1244444444566666777666667778899985 6999999977777666655543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=166.23 Aligned_cols=339 Identities=15% Similarity=0.128 Sum_probs=204.4
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
..|||.....+.+...+.|. .+.++..-|++++++|+|.+|.+.+.....++..+ .++.|++.||+|+|.++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35888877777777777666 68899999999999999999999986666666654 78999999999999999988888
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
..++..+... .+ +++.+.....+.|.+.+..++.+.....++||+ +||.+.++..+..++++.+...+...+
T Consensus 82 ~~i~~~l~~~-----~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 82 MILAVAGLMF-----SH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHHH-----cc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887654432 12 245555555666777777777777778899986 589988887777777766553332221
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHH
Q 039263 182 YGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLV 261 (492)
Q Consensus 182 f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
... . .+.+..|. + . ++..++..
T Consensus 155 ~~~-------------------------~------~gw~~~f~----~-~--~~~~~~~~-------------------- 176 (394)
T PRK03699 155 LAR-------------------------S------IEWYWVYA----C-I--GLVYVAIF-------------------- 176 (394)
T ss_pred Hhc-------------------------c------ccHHHHHH----H-H--HHHHHHHH--------------------
Confidence 110 0 00011111 1 0 00000000
Q ss_pred HHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchh
Q 039263 262 LILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSID 341 (492)
Q Consensus 262 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~ 341 (492)
++..+ .+ .|++++ ++ + + + +++.. +...++.
T Consensus 177 --~~~~~----~~-----------------~p~~~~---~~----~--~-~----------~~~~~-------~~~~~~~ 206 (394)
T PRK03699 177 --ILTLF----SE-----------------FPALGK---HA----P--K-A----------DKPVA-------KEKWGIG 206 (394)
T ss_pred --HHHHh----cC-----------------Cccccc---cC----c--c-c----------cCccc-------cccCChH
Confidence 00000 00 000000 00 0 0 0 00000 0012467
Q ss_pred HHHHHHHHHhhccceeEEecchhHHHh-hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHH
Q 039263 342 MLIIFIATTCGVGGTLTAIDNLGQIGS-SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLF 420 (492)
Q Consensus 342 FWllf~~~~~~~g~Gl~~i~n~~~I~~-slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l 420 (492)
+|.+.+..++.......+.+-...+.+ .+|++..+.+..++++.+++.+||+.+|.++||+.+|+ .+.....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~------~l~~~~~~ 280 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR------ILTVLAGL 280 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh------HHHHHHHH
Confidence 788777666644332223334555554 46888778888899999999999999999999996542 23233333
Q ss_pred HHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc----eehhhHHHHHH
Q 039263 421 SCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG----AVASPVGAYIL 485 (492)
Q Consensus 421 ~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~----~la~~~gs~l~ 485 (492)
..+..+++.... ...+.+...+.|++.++.+++..+...|.. +++.++.++++ .++..+|+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~p~~~ 349 (394)
T PRK03699 281 ALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPKLVNFILTCGTIGTMLTFVVT 349 (394)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333332222 234455667779999999988888888765 45555555554 34444444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=163.94 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=119.6
Q ss_pred ccccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHH
Q 039263 23 GVLTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGS 100 (492)
Q Consensus 23 ~~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~ 100 (492)
+..++||..+.+..+..++.+. .+..+...+++++++|+|++|.+++.....++.. ..++.|.+.||+|+|.++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3457899998888888888887 6888999999999999999999998655555554 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHH
Q 039263 101 IMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQL 177 (492)
Q Consensus 101 vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i 177 (492)
++..++..+... .+ +++.++....+.|.+.+..+.++.....+++| ++||.+.|+.....++|..+-..+
T Consensus 85 ~~~~~~~~~~~~-----~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 85 VLFSAGTLACGF-----AP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred HHHHHHHHHHHH-----hc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888654432 22 35666667788888888888888888899998 579999999888877776665443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=165.76 Aligned_cols=350 Identities=14% Similarity=0.099 Sum_probs=207.9
Q ss_pred chHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
.||..+....+..+..+. .+..+...+.+++++|+|..|.+++.+...++..+ +++.|.+.||+|+|.++.++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 344555566666666666 35556677888999999999999887777777654 8899999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
++..+.... + +.|.+...-.+.|.|.+..+++......++||+ +||++.|+.....++|..+...+...+.+
T Consensus 95 ~~~~~~~~~-----~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 95 VGTGLSGLA-----S--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHHHHHHHH-----h--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 887654432 2 256666666788888888888888888999985 59999999888888877665433222111
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHH
Q 039263 184 DNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263 (492)
Q Consensus 184 ~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
. . +-+..|. +.. . .. .+
T Consensus 168 ~--------------------------~------~w~~~f~----i~~---~-~~----------------------~~- 184 (426)
T PRK12307 168 A--------------------------Y------GWRAAFF----VGL---L-PV----------------------LL- 184 (426)
T ss_pred c--------------------------C------CHHHHHH----HHH---H-HH----------------------HH-
Confidence 0 0 0011111 100 0 00 00
Q ss_pred HHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHH
Q 039263 264 LLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDML 343 (492)
Q Consensus 264 ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FW 343 (492)
.+... ...+++. .+.+ ++. +++ . + ++ + ...+....+++++++++++|
T Consensus 185 ~~~~~--~~~p~~~-~~~~---------~~~-----~~~-----~-~-~~------~---~~~~~~~~~~~~~~~~~~~~ 231 (426)
T PRK12307 185 VIYIR--ARAPESK-EWEE---------AKL-----SGK-----G-K-HS------Q---SAWSVFSLSMKGLFNRAQFP 231 (426)
T ss_pred HHHHH--HHCCCCh-HHHH---------hhh-----hcc-----c-c-cc------c---cchhhhhHHHHHHHhhchHH
Confidence 00000 0000000 0000 000 000 0 0 00 0 00000123567899999998
Q ss_pred HHHHHH---HhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHH
Q 039263 344 IIFIAT---TCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLF 420 (492)
Q Consensus 344 llf~~~---~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l 420 (492)
.....+ ++..+....+.+......++.|++..+.+...++..+++.+||+.+|.++||++||+ .+....++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~------~~~~~~~~ 305 (426)
T PRK12307 232 LTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK------TFSIGLLM 305 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHH
Confidence 655432 222222222334455566677877666777788899999999999999999996542 33333333
Q ss_pred HHHHHHHHH-hcCCchhHHHHHHHHhh--hcchhhhHHHHHHHhhcCCCcccccccc----eehhhHHHHHH
Q 039263 421 SCVGHPFIA-YGIPNSLYAASVIIGFC--FGAQWPLLFAIISEIFGLKYYSTLYNFG----AVASPVGAYIL 485 (492)
Q Consensus 421 ~~~~~ll~~-~~~~~~l~~~~~liG~~--~G~~~~~~P~i~se~FG~k~~g~nyg~~----~la~~~gs~l~ 485 (492)
..+..+.+. ........+...+.|+. ..+..++.|.++.|.|+.++.|+..|+. .++.++|+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~ 377 (426)
T PRK12307 306 SFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAA 377 (426)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHH
Confidence 333332222 22222233334444443 3456788999999999999889888864 33444444443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=167.93 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=105.0
Q ss_pred cchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
..||..+.+..+...+... ...++...|.+++ +|+|++|.+++.....++.. ..++.|++.||+|+|..+.+|.++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 23 RLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 3477777666665555544 4556667788876 59999999998666666664 4799999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHH
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQL 177 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i 177 (492)
.++..+.... .... .+.+.++...++.|.+.+..+.+......++|| ++||++.|+.....++++.+...+
T Consensus 102 ~~~~~~~~~~--~~~~-~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l 173 (438)
T TIGR00712 102 AAVMLLMGFV--PWAT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLL 173 (438)
T ss_pred HHHHHHHhcc--cccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHH
Confidence 8886654322 1111 224445555556677777777777777889997 579999999877777776666443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=167.83 Aligned_cols=143 Identities=12% Similarity=-0.004 Sum_probs=109.3
Q ss_pred chHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
.||..+....+.-.+... .+..+.-.+++++++|+|+.|++++..+..++.. ..++.|++.||+|+|.++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 456655555554444444 5677788899999999999999998776776665 47999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHH
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQ 176 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~ 176 (492)
++..+.... ++ .+.++..-.+.|.+.+..+++......+|||+ +||++.|+.....++|..+-..
T Consensus 85 ~~~~~~~~~-----~~--~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 85 IASTATMFA-----TG--PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHHHh-----cC--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887654422 32 45566666677888888777777778999995 7999999998888877665533
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=159.78 Aligned_cols=309 Identities=14% Similarity=0.078 Sum_probs=190.6
Q ss_pred cccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 039263 46 YMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVW 124 (492)
Q Consensus 46 Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~ 124 (492)
.+++..-|++++++|+|.+|.+++.....++..+ .++.|++.||+|+|.++.+|.++..++.... ..++ .+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~~~--~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SAPG--TA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hhcc--HH
Confidence 4677888999999999999999987666666654 8999999999999999999988877776432 1122 34
Q ss_pred HHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhh
Q 039263 125 QMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVF 204 (492)
Q Consensus 125 ~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~ 204 (492)
.+.....+.|.|.+...++.-....++||+|||++.|+.....++|..+-..+...
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~------------------------ 144 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVP------------------------ 144 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 45555667777777766666666778999999999999877766666554322111
Q ss_pred hhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCC
Q 039263 205 LRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKK 284 (492)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~ 284 (492)
.++. . ....+..+.. .. +..++ .+ ++.. ++. + +
T Consensus 145 --l~~~------~--~~~w~~~f~~-~~--~~~~~---------------------~~-~~~~------~~~-~---~-- 177 (355)
T TIGR00896 145 --LAQH------S--GGHWQQALAW-WA--LPALL---------------------AL-LAWI------PQV-R---R-- 177 (355)
T ss_pred --HHHh------h--hhhHHHHHHH-HH--HHHHH---------------------HH-HHHh------hhh-c---c--
Confidence 0000 0 0001100000 00 00000 00 0001 100 0 0
Q ss_pred CccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecchh
Q 039263 285 PSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLG 364 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~ 364 (492)
++++ + + + + ++.+.++++|++++|.+.+.+++....-..+.+...
T Consensus 178 -------~~~~------~-------~------------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 221 (355)
T TIGR00896 178 -------RVAA------N-------Q------------T-T---TRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLP 221 (355)
T ss_pred -------ccCC------C-------C------------C-C---CCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0 0 011345788999999877655554333233344556
Q ss_pred HHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 039263 365 QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIG 444 (492)
Q Consensus 365 ~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~liG 444 (492)
++.++.|.+..+.+...++..+...+||+..|+++||+++|+ ..+.+..+++.++.+.+............++.|
T Consensus 222 ~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 296 (355)
T TIGR00896 222 AILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQR-----GIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLG 296 (355)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 677778888777888899999999999999999999985332 233344444444444333322233333566789
Q ss_pred hhhcchhhhHHHHHHHhhcC-CCcccccccc
Q 039263 445 FCFGAQWPLLFAIISEIFGL-KYYSTLYNFG 474 (492)
Q Consensus 445 ~~~G~~~~~~P~i~se~FG~-k~~g~nyg~~ 474 (492)
+++|..+.+..+.+.+.+.. ++.+..+++.
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMA 327 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999988888877764 4456666654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-16 Score=160.63 Aligned_cols=336 Identities=12% Similarity=0.047 Sum_probs=198.1
Q ss_pred cchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
++||..+..-.+.+..... .|.-+..-|++++++|+|++|++++.....++. ...++.|.+.||+|+|.+..++.++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4577655554454444433 455555679999999999999999755555554 45789999999999999999999888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
.++..+... .+ ++|.+.+.-++.|.+.+..++.+.....+++| +|||++.|+.....+++..+-..+..
T Consensus 85 ~~~~~~~~~-----~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~--- 154 (390)
T PRK03545 85 IASHVLSAL-----AW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR--- 154 (390)
T ss_pred HHHHHHHHH-----hc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH---
Confidence 888654432 22 25656555566777777777777777889987 58999999987777766554422211
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHH
Q 039263 183 GDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVL 262 (492)
Q Consensus 183 ~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 262 (492)
.+. ... +.+..|. + .. ...++... ..
T Consensus 155 -------------------~l~----~~~------gw~~~f~----~-~~-~~~~l~~~-------------------~~ 180 (390)
T PRK03545 155 -------------------VIG----QYL------GWRTTFL----A-IG-GGALITLL-------------------LL 180 (390)
T ss_pred -------------------HHH----HHh------cHHHHHH----H-HH-HHHHHHHH-------------------HH
Confidence 110 000 0011221 1 00 00000000 00
Q ss_pred HHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhH
Q 039263 263 ILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDM 342 (492)
Q Consensus 263 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~F 342 (492)
. ...| ++++ + + +++ ..+.++.+|++++
T Consensus 181 ----~---~~~~-----------------~~~~----~-~--------------------~~~----~~~~~~~~~~~~~ 207 (390)
T PRK03545 181 ----I---KLLP-----------------LLPS----E-H--------------------SGS----LKSLPLLFRRPAL 207 (390)
T ss_pred ----H---HhCC-----------------CCCC----C-C--------------------cch----HHHHHHHHhCcHH
Confidence 0 0000 0000 0 0 000 1135688999999
Q ss_pred HHHHHHHHhhccceeEEecchhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHH
Q 039263 343 LIIFIATTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFS 421 (492)
Q Consensus 343 Wllf~~~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~ 421 (492)
|..+...++......+..+...++.++ .|+++.+.+...+++++.+..|++..|.++||.++| ... +...+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------~~~-~~~~~~ 280 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------FLL-IAIALL 280 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh------HHH-HHHHHH
Confidence 977765554333222222333444444 577777778888999999999999999999987432 222 223333
Q ss_pred HHHHHHH-HhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccc----cceehhhHHHHHHh
Q 039263 422 CVGHPFI-AYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYN----FGAVASPVGAYILN 486 (492)
Q Consensus 422 ~~~~ll~-~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg----~~~la~~~gs~l~~ 486 (492)
.++..++ .... ...+.+..++.|++++.......+.+.|... ++.+.-.+ +..++.++|+.+..
T Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G 350 (390)
T PRK03545 281 LVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN 350 (390)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 2222 2345567777899888777777788888765 55555333 33445555555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=161.48 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=92.6
Q ss_pred hCcccccccccHH-HHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039263 42 AGATYMFGLYSSD-IKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIP 119 (492)
Q Consensus 42 ~Gt~Y~fS~ys~~-L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~ 119 (492)
...-|.++.+.|+ +++++|+|+.|.+++.....++.. ..++.|.+.||+|+|.++.++.++..++..+.... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~-- 89 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQ-- 89 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hh--
Confidence 3445889999996 999999999999998776666665 48999999999999999999999998887655432 10
Q ss_pred CchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHH
Q 039263 120 KPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGA 172 (492)
Q Consensus 120 ~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~ 172 (492)
++|.+....++.|.+.+. +..+.....+++| ++||.+.++..++..+|..
T Consensus 90 --~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 140 (366)
T TIGR00886 90 --SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGG 140 (366)
T ss_pred --hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH
Confidence 255555555555666443 4566777889998 5799999987655444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-15 Score=153.44 Aligned_cols=340 Identities=13% Similarity=0.103 Sum_probs=192.0
Q ss_pred cchHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
++.+...++.+..+...+..|. |-+++.+++|+|.+|.+++.+...++.. ..++.|++.||+|+|.++.++.++..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~ 89 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQG---WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWC 89 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHH---hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 4555666677777777776664 3466668899999999997555555554 58999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
++..+.- ..+... .+.+.+.....+.|.|.+....+......+++| +|||++.|+..+..++|..+++++......
T Consensus 90 ~~~~~~~--~~~~~~-~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 90 VGHAAFI--VFGLGH-ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHH--HHhccC-ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7754321 112211 224555555566777776665555666677775 689999999887777765555443322211
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHH
Q 039263 184 DNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263 (492)
Q Consensus 184 ~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
+ .. +.+..+... . . +..+..+.. ..+
T Consensus 167 ~-------------------------~~------g~~~~~~~~--~--~---~~~~~~~~~---------------~~~- 192 (402)
T TIGR00897 167 P-------------------------AF------GEMNTLWSA--L--A---FVLTGGVIA---------------LFS- 192 (402)
T ss_pred c-------------------------cc------chHHHHHHH--H--H---HHHHHHHHH---------------Hhc-
Confidence 1 00 001111100 0 0 000000000 000
Q ss_pred HHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHH
Q 039263 264 LLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDML 343 (492)
Q Consensus 264 ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FW 343 (492)
.++ +++++. +++ ++ +. .+....+++.+|++.+|
T Consensus 193 ---------~~~----------------~~~~~~--~~~---------~~----------~~-~~~~~~~~~~~~~~~~~ 225 (402)
T TIGR00897 193 ---------NKD----------------IFTPQH--MQT---------RE----------KF-SELGKAATILFTNPNVL 225 (402)
T ss_pred ---------cCC----------------CCCccc--ccC---------Cc----------ch-hhHHHHHHHHHcChhHH
Confidence 000 000000 000 00 00 00011345789999999
Q ss_pred HHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHH
Q 039263 344 IIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCV 423 (492)
Q Consensus 344 llf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~ 423 (492)
.+.+..++....-....+-...+.+++|++..+.+...++..+++.+|++..|+++||++||+.. + ....+...+..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-~-~~~~l~~~~~~~ 303 (402)
T TIGR00897 226 LGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV-R-WFGGVGCGIFTL 303 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-H-HHHHHHHHHHHH
Confidence 88776655433222222334445567788777777777888999999999999999999654311 0 111111111111
Q ss_pred HHHHHHh--cCC-chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 424 GHPFIAY--GIP-NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 424 ~~ll~~~--~~~-~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
...+... ... ...++..++.|++.++.... ...+.|. .++|.|+.+|+...
T Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~~g~~~g~~~~ 357 (402)
T TIGR00897 304 ALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-APKHKGAAMSVLNL 357 (402)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-CcchhHHHHHHHHH
Confidence 1111111 111 13445667778888876543 4566776 46899999997543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=155.33 Aligned_cols=335 Identities=13% Similarity=0.054 Sum_probs=188.8
Q ss_pred hhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Q 039263 58 SLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANS 136 (492)
Q Consensus 58 ~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g 136 (492)
++|++..+.+.+..+..++..+ .+++|++.||+|+|.++.++.++..++..+....... ..+.+.+..++.|.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-----GIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHh
Confidence 6889999999986666666654 8999999999999999999998887776554333221 134455667788899
Q ss_pred ccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhhhccccccccc
Q 039263 137 QSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVFLRTFRIIKIVR 215 (492)
Q Consensus 137 ~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~ 215 (492)
.+..+.+......+||| ++||++.|+..++..+|..+-..+...+.+. . .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~----------------------~---~---- 195 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES----------------------W---G---- 195 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------c---C----
Confidence 99999999999999998 5799999999888778777664443322110 0 0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCc
Q 039263 216 QANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPE 295 (492)
Q Consensus 216 ~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (492)
+-...|. +.. +..++..+ + .... .+++++. ++++ ++++
T Consensus 196 --gw~~~f~----i~~---~~~~~~~~-------------------~-~~~~-----~~~~p~~--~~~~------~~~~ 233 (465)
T TIGR00894 196 --GWPMIFY----VFG---IVGCAWSL-------------------L-WFVF-----PADDPSI--HPCI------SKFE 233 (465)
T ss_pred --CCCeehh----hhh---HHHHHHHH-------------------H-HHHH-----hcCCccc--CCCC------CHHH
Confidence 0011222 100 00000000 0 0000 0110000 0000 0000
Q ss_pred cccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecchhHHH-hhcCCCC
Q 039263 296 LKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIG-SSLGYPA 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~-~slg~~~ 374 (492)
.+..+ + . .++ ++++. .....+++.++++++|.+++..++.......+..-+..+. +.+|++.
T Consensus 234 ~~~i~-------------~-~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~ 296 (465)
T TIGR00894 234 KKYIN-------------S-S-LQG-QKGST-RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSG 296 (465)
T ss_pred HHHHH-------------h-h-ccc-ccCCC-CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence 00000 0 0 000 00000 1123578999999999999877765444333333444444 3468877
Q ss_pred CccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH----HHHHHHHHHHHHHh-cCCchh-HHHHHHHHhhhc
Q 039263 375 RSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF----VLLFSCVGHPFIAY-GIPNSL-YAASVIIGFCFG 448 (492)
Q Consensus 375 ~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i----~~~l~~~~~ll~~~-~~~~~l-~~~~~liG~~~G 448 (492)
.+.+...++..++...++++.|+++||+.+|+...|.....+ ......+..+.... ...... .+...+.+.+.+
T Consensus 297 ~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (465)
T TIGR00894 297 KENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSS 376 (465)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh
Confidence 777888889999999999999999999987755544432211 11111111111111 111122 223333344455
Q ss_pred chhhhHHHHHHHhhcCCCcccccccceehhhHHHHHHh
Q 039263 449 AQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILN 486 (492)
Q Consensus 449 ~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l~~ 486 (492)
......-....|..+ ++.|.-.++......+|+.+..
T Consensus 377 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p 413 (465)
T TIGR00894 377 GPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIAS 413 (465)
T ss_pred hhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444456554 6888888887666666655543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=147.68 Aligned_cols=327 Identities=15% Similarity=0.079 Sum_probs=194.0
Q ss_pred chHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFF 105 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~ 105 (492)
+|+..+.+........+ ...+...-|.+++++|+|.+|.+++.....++..+ .++.|.+.||+|+|.++.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 82 (385)
T TIGR00710 4 KAFALLLGCLSILGPLG-IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFAL 82 (385)
T ss_pred hHHHHHHHHHHHHHHHH-HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 44444444333322223 34445556889999999999999986666666654 88999999999999999999998888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCC
Q 039263 106 GYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGD 184 (492)
Q Consensus 106 Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~ 184 (492)
+..+.... + +++.+.....+.|.+.+..+++......+++|+ +||++.|+......++..+-..+...+.
T Consensus 83 ~~~~~~~~-----~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-- 153 (385)
T TIGR00710 83 SSLGLALS-----N--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL-- 153 (385)
T ss_pred HHHHHHHH-----c--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 87654422 2 255566667788888888888888888899985 6899999988777777655433322111
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHH
Q 039263 185 NSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLIL 264 (492)
Q Consensus 185 ~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~l 264 (492)
+.. +.+..+. + .++..++.. .+
T Consensus 154 ------------------------~~~------~~~~~~~----~---~~~~~~~~~-------------------~~-- 175 (385)
T TIGR00710 154 ------------------------VWL------SWHAIFA----F---LSLAGILLS-------------------AL-- 175 (385)
T ss_pred ------------------------HHc------CHHHHHH----H---HHHHHHHHH-------------------HH--
Confidence 100 0011111 1 000000000 00
Q ss_pred HhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHH
Q 039263 265 LFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLI 344 (492)
Q Consensus 265 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWl 344 (492)
.. ...|+ ++++ ++ + + + .+....+.++.+|++++|.
T Consensus 176 --~~--~~~~~----------------~~~~-----~~----~--~-~-------------~~~~~~~~~~~~~~~~~~~ 210 (385)
T TIGR00710 176 --IF--FILPE----------------TLPY-----EA----R--I-Q-------------ISTYFETFLLLLKSKMFWG 210 (385)
T ss_pred --HH--HhCCC----------------CCCC-----cc----c--C-C-------------HHHHHHHHHHHHcCchhHH
Confidence 00 00000 0000 00 0 0 0 0000124567899999998
Q ss_pred HHHHHHhhccceeEEecchhHHHh-hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHH
Q 039263 345 IFIATTCGVGGTLTAIDNLGQIGS-SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCV 423 (492)
Q Consensus 345 lf~~~~~~~g~Gl~~i~n~~~I~~-slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~ 423 (492)
+.+...+..+.-..+......+.+ .++.++.+.+...+...+....|++..|+++||+++|+ .+.+...++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~------~~~~~~~~~~~ 284 (385)
T TIGR00710 211 YALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS------LLRMGLILFAV 284 (385)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHH
Confidence 776554433322222222233333 56777667777788889999999999999999996543 22223333333
Q ss_pred HHHHHHh---cC--Cc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 424 GHPFIAY---GI--PN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 424 ~~ll~~~---~~--~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
+.+++.. .. .. .+.....+.|++++..+...+..+.|.+. ++.++-.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 339 (385)
T TIGR00710 285 SAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASAL 339 (385)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHH
Confidence 3322211 11 11 23445667789999999999999999885 555655554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-16 Score=160.59 Aligned_cols=329 Identities=20% Similarity=0.257 Sum_probs=195.6
Q ss_pred cccccH-HHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 039263 48 FGLYSS-DIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQ 125 (492)
Q Consensus 48 fS~ys~-~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~ 125 (492)
+...-+ .+++++|+|..|++++.+...++.. ..++.|.+.||+|+|.++.++.++..++..+.. +. ++ .|.
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~~---~~--~~~ 87 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA--FA---SN--FWL 87 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--HH---CC--HHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh--hh---hh--HHH
Confidence 334445 8899999999999998666666654 589999999999999999999999998833333 22 22 455
Q ss_pred HHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhh
Q 039263 126 MCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVF 204 (492)
Q Consensus 126 l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~ 204 (492)
+....++.|.+.+..+.+......+++|+ +|+++.|+......+|..+-..+...+. +
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-~-------------------- 146 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-S-------------------- 146 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C--------------------
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-h--------------------
Confidence 66677788988889999999999999997 8999999998888887755533322222 1
Q ss_pred hhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCC
Q 039263 205 LRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKK 284 (492)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~ 284 (492)
.. +.+..|. +... .+++...+.. ... +++
T Consensus 147 -----~~------~~~~~~~----~~~~--~~~~~~il~~--------------------~~~------~~~-------- 175 (352)
T PF07690_consen 147 -----YF------GWRWAFL----ISAI--LSLIAAILFI--------------------LFL------PEP-------- 175 (352)
T ss_dssp -----HC------HHCCHHH----HHHH--HHHHHHHHHH--------------------CCC-----------------
T ss_pred -----cc------ccccccc----cccc--hhhhhhhhHh--------------------hhh------hhc--------
Confidence 00 0011222 1000 0000000000 000 000
Q ss_pred CccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecchh
Q 039263 285 PSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLG 364 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~ 364 (492)
++++... ++ . + ++ +..+++.. + .+++..+++.+|.+++.+++....-..+.....
T Consensus 176 -------~~~~~~~-~~------~-~-~~------~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T PF07690_consen 176 -------PPPRERE-SP------K-E-SE------SKKPKPLK--P-GFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLP 230 (352)
T ss_dssp -------STTTT---SS------T-T-TT--------HHHCCC--H--CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccccc-cc------c-c-cc------cccccccc--c-ccccccccchhhhhhhhhhHHHHHHHHhhcccc
Confidence 0000000 00 0 0 00 00000000 0 356778888888555544443211111223333
Q ss_pred HH-HhhcCCC-CCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc-CCchhHHHHH
Q 039263 365 QI-GSSLGYP-ARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG-IPNSLYAASV 441 (492)
Q Consensus 365 ~I-~~slg~~-~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~~~ 441 (492)
.+ .+.++.+ ..+.+...++..+....+++..|.++||+++|+ +.........+..+...+.... .....+...+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (352)
T PF07690_consen 231 LYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR---RLLIAILLLILGALGLLLLPFSSSPVWLIIALF 307 (352)
T ss_dssp HHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHH
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33 4556776 455666678889999999999999999985432 1111122222222222111112 1234566777
Q ss_pred HHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHH
Q 039263 442 IIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAY 483 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~ 483 (492)
+.|+++|..+....+.+.|.+..++.|+.+|+..+..-+|..
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 349 (352)
T PF07690_consen 308 LIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI 349 (352)
T ss_dssp HHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988766655544
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=153.66 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=104.3
Q ss_pred HHHHHHHHH-HHhhCcccccccccHHHHH-hhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHH
Q 039263 30 FMVFASLLI-MAVAGATYMFGLYSSDIKT-SLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFG 106 (492)
Q Consensus 30 ~~l~a~~~i-~l~~Gt~Y~fS~ys~~L~~-~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~G 106 (492)
..|..+++. .++--.-+.||.-.+++++ .+|+|.+|+.++ ++....++...++.|++.||+|||.+..++.++..++
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 344444433 3333345788888888877 799999999987 5555555555699999999999999999999998888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHH
Q 039263 107 YFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 107 y~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~ 174 (492)
..++....+...+ +++.+....++.|.+ +..+.++++...+|||+ +||++.|+..+...+|+.+.
T Consensus 114 ~~~~~~a~~~~~~--s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~ 179 (462)
T PRK15034 114 CVWLGIAVQNPNT--PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVM 179 (462)
T ss_pred HHHHHHHHcccCC--CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence 7655544444333 367777777777776 66788999999999995 59999999875544555544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=149.58 Aligned_cols=331 Identities=11% Similarity=0.049 Sum_probs=196.6
Q ss_pred HHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHH
Q 039263 32 VFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFM 109 (492)
Q Consensus 32 l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~ 109 (492)
+++..+..+..+. .+..+. ..++++.+..|++++.....++.. ..++.|.+.||+|+|.++.++.++..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPL----YVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 3344444444433 234444 445578899999998666666665 4899999999999999999998887777665
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhH
Q 039263 110 IWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKA 188 (492)
Q Consensus 110 ~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~ 188 (492)
....- .....++|.+.....+.|.+.+...++......+++| ++||++.|+......+|..+-..+...+
T Consensus 81 ~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l------- 151 (365)
T TIGR00900 81 LPFVA--LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM------- 151 (365)
T ss_pred HHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------
Confidence 54332 1121236666666677788888888888888889998 4799999998888777765442221111
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhh
Q 039263 189 LILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLP 268 (492)
Q Consensus 189 fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p 268 (492)
.+.. +....|. +. ++..++.. +.+ ..
T Consensus 152 -------------------~~~~------g~~~~~~----~~---~~~~~~~~------------------~~~--~~-- 177 (365)
T TIGR00900 152 -------------------YATL------GIKWAIW----VD---AVGFAISA------------------LLI--VS-- 177 (365)
T ss_pred -------------------HHHh------hHHHHHH----HH---HHHHHHHH------------------HHH--Hh--
Confidence 1100 0011111 10 00000000 000 00
Q ss_pred hhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHH
Q 039263 269 IAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIA 348 (492)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~ 348 (492)
.+.+ + ++++ ++ + +.+++ .. ++.....++.+|++++|.+.+.
T Consensus 178 ----~~~~--------~------~~~~-----~~----~--~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T TIGR00900 178 ----VRIP--------E------LAAS-----EI----Q--ALSNA------VL----RDTREGIKFVLKNPLLRTLLLL 218 (365)
T ss_pred ----cccc--------c------CCCc-----cc----c--ccchh------HH----HHHHhHHHHHHcCcHHHHHHHH
Confidence 0000 0 0000 00 0 00000 00 0001245678899999988876
Q ss_pred HHhhccceeEEecchhHHH-hh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 039263 349 TTCGVGGTLTAIDNLGQIG-SS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHP 426 (492)
Q Consensus 349 ~~~~~g~Gl~~i~n~~~I~-~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~l 426 (492)
.++..........+..+.. +. ++.++.+.+...+..++.+.+|++..|.++||.+|| ..+.+...+..++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~ 292 (365)
T TIGR00900 219 ALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM------ALMTGAIFVIGLAIL 292 (365)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHHH
Confidence 6654444333332333333 33 677777777778888999999999999999987543 334444444444444
Q ss_pred HHHhcC--CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 427 FIAYGI--PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 427 l~~~~~--~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
+..... ...+++..++.|+++|.......+++.|.+..++.|+.+++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 342 (365)
T TIGR00900 293 VVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQ 342 (365)
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333322 234566777889999999999999999999988888877764
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=155.56 Aligned_cols=346 Identities=15% Similarity=0.095 Sum_probs=196.3
Q ss_pred CcccccccccHHHHHhhCCC---hhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039263 43 GATYMFGLYSSDIKTSLGYD---QSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRI 118 (492)
Q Consensus 43 Gt~Y~fS~ys~~L~~~~~~s---q~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i 118 (492)
+-.|.++.+.+++++++|++ +.+.+++.....+|..+ .++.|.+.||+|+|.+++++.++..++..+... .
T Consensus 103 ~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~-----~ 177 (505)
T TIGR00898 103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF-----S 177 (505)
T ss_pred CcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----c
Confidence 34577778999999999999 88888887777778765 789999999999999999998888777654332 2
Q ss_pred CCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 039263 119 PKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLP 197 (492)
Q Consensus 119 ~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~ 197 (492)
+ +++.+.+.-++.|.+.+..+..+.....+++|+ +||.+.++...++++|..+. ++...+..+ -+..++.. ..+
T Consensus 178 ~--~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~-wr~~~~~~-~i~ 252 (505)
T TIGR00898 178 P--NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLL-PLVAYFIPD-WRWLQLAV-SLP 252 (505)
T ss_pred c--cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhH-HHHHHHHH-HHH
Confidence 2 356677777788999999889899999999985 59999988876666665443 333333221 22222222 222
Q ss_pred HHHHHhhhhcccccccc--ccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHH
Q 039263 198 AAISFVFLRTFRIIKIV--RQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKE 275 (492)
Q Consensus 198 ~~v~~~~~~~i~~~~~~--~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~ 275 (492)
.++..+...+++..|.. .+.+.++... . + .+.
T Consensus 253 ~~~~~~~~~~~~esp~~l~~~~~~~~a~~----~--------------------------------l----------~~~ 286 (505)
T TIGR00898 253 TFLFFLLSWFVPESPRWLISQGRIEEALK----I--------------------------------L----------QRI 286 (505)
T ss_pred HHHHHHHHHhcCCChHHHHHCCCHHHHHH----H--------------------------------H----------HHH
Confidence 22222222222111100 0000000000 0 0 000
Q ss_pred hhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccc
Q 039263 276 EISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGG 355 (492)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~ 355 (492)
... +..+. . ++..+.+. ++ +.+. ..+..+.+++++++++|...+...+....
T Consensus 287 ~~~------------~~~~~-~---------~~~~~~~~----~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (505)
T TIGR00898 287 AKI------------NGKKL-P---------AEVLSLSL----EK-DLSS-SKKQYSFLDLFRTPNLRKTTLCLMMLWFT 338 (505)
T ss_pred HHH------------cCCCC-C---------HHHHhhhh----hh-hhhh-ccCCCcHHHHhCChHHHHHHHHHHHHHHH
Confidence 000 00000 0 00000000 00 0000 01134778999999998877665443322
Q ss_pred eeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCc-
Q 039263 356 TLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPN- 434 (492)
Q Consensus 356 Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~- 434 (492)
.....+......+.++.+ ......+.++....|+++.+++.||++|| ..+.+..++..++.+++......
T Consensus 339 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr------~~~~~~~~~~~~~~l~~~~~~~~~ 409 (505)
T TIGR00898 339 TAFSYYGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLLAGVALLLLLFVPVDL 409 (505)
T ss_pred HHHHHHHHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHcCCCc
Confidence 111111111111122221 22334566777888999999999998544 44555555556555544333222
Q ss_pred --hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 435 --SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 435 --~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
.......+.+++.++.+.+...+++|.|.+++-++-.|+.....-+|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig 458 (505)
T TIGR00898 410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVG 458 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHH
Confidence 23444556678888889999999999999887777666644333333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=147.04 Aligned_cols=314 Identities=15% Similarity=0.045 Sum_probs=177.6
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
-+.|+..-|++++++|+|.+|++++..+..++.. ..++.|.+.||+|+|.++. +++.....-.+ . .... + ++
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~-~~~~~~~~~~~-~-~~~~--~--~~ 79 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLF-GSLATFAAAAG-R-LLDP--F--NY 79 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH-HHHHHHHHHHH-H-HHHh--c--cH
Confidence 3567888899999999999999998766666654 4799999999999888654 55444433111 1 1111 1 25
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISF 202 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~ 202 (492)
+.+...-++.|.|.+. +.++.....+||| ++||++.++......+|+.+-..+...
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~---------------------- 136 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLK---------------------- 136 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 5566666777888775 4555566688887 579999999988888876665222111
Q ss_pred hhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
.... .+-+..|. + . ++..++.. .+..... ||
T Consensus 137 ----l~~~------~gWr~~f~----~-~--~~l~~~~~-------------------~~~~~~l------p~------- 167 (368)
T TIGR00903 137 ----IYTA------GGLQLLII----P-I--AAVAAAGI-------------------ILVLAAL------PA------- 167 (368)
T ss_pred ----HHHc------cchHHHHH----H-H--HHHHHHHH-------------------HHHHHHc------CC-------
Confidence 1110 01111111 1 0 00000000 0000001 10
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
+|++. ++. . + .++ ....++|.+|++++|.+++.+++....-..+.+=
T Consensus 168 ---------~p~~~---~~~-------~-~----------~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~w 214 (368)
T TIGR00903 168 ---------LPFQA---AEG-------F-G----------FKD---AVKEFGALAGRKDLWIIGAILGFGVALFDNLAIW 214 (368)
T ss_pred ---------CCCCC---CCC-------c-c----------hHH---HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 0 0 000 0013678999999999998888866553333333
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASV 441 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~ 441 (492)
+.++.++.|++. +.+...++..+ .|-+..++++||..||. .|........+++.+..+++.... .........
T Consensus 215 lp~~L~~~g~s~-~~~~~~~l~~~---~g~~g~~~~~d~~~r~~--~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (368)
T TIGR00903 215 LEAALRPAGLED-IAGDAVALAIL---AGLIGVAVIPDRVARAG--LRSIYIRAAALLIAAFFLALAFELNRLALFAFIG 288 (368)
T ss_pred HHHHHHHCCCCh-HHHHHHHHHHH---HHHHHHHHhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 666666667653 23334444444 45555699999997653 233323222333333333332222 222334445
Q ss_pred HHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 442 IIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
+.+++.++.++++.++.+|.|.+++-|+-.|+...
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~ 323 (368)
T TIGR00903 289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGF 323 (368)
T ss_pred HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhH
Confidence 56777778888888999999998887877777544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=150.44 Aligned_cols=373 Identities=15% Similarity=0.086 Sum_probs=209.4
Q ss_pred ccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 039263 47 MFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQ 125 (492)
Q Consensus 47 ~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~ 125 (492)
..+...|++++++|.|+.+.+++.+...++..+ .++.|++.||+|+|.++++|.++..++..+.. ..+ +.+.
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----~~~--~~~~ 92 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-----VAP--NLEL 92 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----CcC--CHHH
Confidence 455678999999999999999986666666654 78999999999999999999998888875433 223 2566
Q ss_pred HHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHh
Q 039263 126 MCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGD-NSKALILLIAWLPAAISFV 203 (492)
Q Consensus 126 l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~-~~~~fllfla~~~~~v~~~ 203 (492)
+...-++.|.+.+...+.+.....+++| ++||++.|+......+++.+-..+...+.+. +-..-++..+....+..++
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence 6667778888888888888888899997 6799999998777777766555444433332 1111122222222222222
Q ss_pred hhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcc-cccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 204 FLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNK-YAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
.....+..+++++++.+. .. ......+............ .+..++...... ...-.........+ |.
T Consensus 173 ~~~~~~~~~~~~~~~~d~-~g---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~----- 240 (485)
T TIGR00711 173 AFFILPRDKPAASENFDF-LG---LLLLSVGLGSLLYGLSEGPERGWFDSNEILIL--SITGLVAIIAFVVW-EL----- 240 (485)
T ss_pred HHHHcCCccccccCCCcH-HH---HHHHHHHHHHHHHHHhhCCCCCCCCchHHHHH--HHHHHHHHHHHHHH-HH-----
Confidence 222222211111110011 00 0000000000000000000 000000000000 00000000000000 00
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
..++| ....+.+|+++||...+..++....-....+.
T Consensus 241 --------------------------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
T TIGR00711 241 --------------------------------------TDDNP-----LVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYL 277 (485)
T ss_pred --------------------------------------cCCCC-----ccCHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 00001 11246788999988766554432221112223
Q ss_pred hhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh--cCC---chh
Q 039263 363 LGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAY--GIP---NSL 436 (492)
Q Consensus 363 ~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~--~~~---~~l 436 (492)
..+..+. +|+++.+++.......+...+|+++.|.+.||++|| ..+.+...++.++.+++.. ... ..+
T Consensus 278 ~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (485)
T TIGR00711 278 LPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR------KLVTIGLILYAVGFYWRAFTFTPDTPFLAI 351 (485)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH------HHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 3444443 677777777788888999999999999999998543 3455555666666554431 111 134
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc----eehhhHHHHHHhh
Q 039263 437 YAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG----AVASPVGAYILNV 487 (492)
Q Consensus 437 ~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~----~la~~~gs~l~~~ 487 (492)
.....+.|++.|..+......+.|.++.++.|+-.++. .++..+|+.+...
T Consensus 352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999998877778888889888888877764 3445555554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=142.21 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=91.6
Q ss_pred cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHH-hcCCCCc
Q 039263 44 ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAV-TGRIPKP 121 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~-~g~i~~~ 121 (492)
.....++....+++++|+|..+++.+..+..++.. ..++.|.+.||+|+|.++.++.++..++........ .+.....
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence 44455567777899999999999998666666665 489999999999999999999888777765443321 1211111
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhh
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLS 170 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLs 170 (492)
.++.+....++.|.|.+..+.++.....+++| ++||++.|+......+|
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 160 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGA 160 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHH
Confidence 23445556678888888888888777788886 67999999865544433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=148.60 Aligned_cols=149 Identities=14% Similarity=0.054 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHHHHhhC---c-ccccccccHHHHHhhCCC--------hhhhhHHHHHhhhhcc-ccccceeeeccCCc
Q 039263 26 TGRWFMVFASLLIMAVAG---A-TYMFGLYSSDIKTSLGYD--------QSTLNLLSFSKDVGGN-VGVLSGLINEITPP 92 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~G---t-~Y~fS~ys~~L~~~~~~s--------q~~l~~is~~~~vg~~-~~~~~G~~~D~~Gp 92 (492)
.++|.......++.++.. . ....+..-++++++++++ +.|.+++.....++.. ..++.|.+.||+||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 344554444444433311 1 223344455666677666 8888888666666664 58999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhH
Q 039263 93 WVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSG 171 (492)
Q Consensus 93 r~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa 171 (492)
|.+++++.++..+|..+... .... .+.|.+.....+.|.|.+..+........+++| ++||++.++...+..+|.
T Consensus 101 r~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 176 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGL--AAFA--LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hccc--cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence 99999999988888654432 1221 224556667778888989888888888899997 579999999887777777
Q ss_pred HHHHHHH
Q 039263 172 AILTQLY 178 (492)
Q Consensus 172 ~i~s~i~ 178 (492)
.+-..+.
T Consensus 177 ~~~~~~~ 183 (481)
T TIGR00879 177 LVAYGFG 183 (481)
T ss_pred HHHHHHH
Confidence 6665544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-13 Score=143.86 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=116.2
Q ss_pred cccccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHH
Q 039263 22 VGVLTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIG 99 (492)
Q Consensus 22 ~~~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG 99 (492)
++..++||..+.+..+..+..+. .+..+...|++++++|+|+.+.+.+.....++..+ .++.|.+.||+|+|.+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 12 RHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34445677766666666665555 35666778999999999999999876666666654 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHH
Q 039263 100 SIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 100 ~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
.++..++..++... + ++|.+.....+.|.+.+..+.+......++||+ +||++.|+......+|+.+-..+.
T Consensus 92 ~~~~~~~~~~~~~~-----~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 92 IVLFSVGTLACGFA-----P--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHHHHHHHHH-----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887654432 2 356666666777888888888888888899985 689999998887777776665555
Q ss_pred HHHcC
Q 039263 179 HAFYG 183 (492)
Q Consensus 179 ~~~f~ 183 (492)
..+.+
T Consensus 165 ~~l~~ 169 (496)
T PRK03893 165 SLVVP 169 (496)
T ss_pred HHHhc
Confidence 54443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=143.29 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=106.0
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.++-|..+.+......+.++ .|.-.-.-|++++++|+|.+|.+.+.....++. ...++.|.+.||+|+|.+..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 34456665555555555555 565555788999999999999998644444444 4588999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~ 174 (492)
..+++.+.... + ++|.+...-.+.|.+.+..+..+.....++|| ++||++.|+..+..++|..+-
T Consensus 95 ~~~~~~~~~~~-----~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig 160 (394)
T PRK10213 95 LTLSCLLVSFA-----N--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIA 160 (394)
T ss_pred HHHHHHHHHHH-----C--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHH
Confidence 88886543221 2 35667666677888888888888888889997 568999999888777765544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=145.10 Aligned_cols=336 Identities=11% Similarity=0.044 Sum_probs=200.5
Q ss_pred HHHHhhCccccc-ccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 039263 37 LIMAVAGATYMF-GLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAV 114 (492)
Q Consensus 37 ~i~l~~Gt~Y~f-S~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~ 114 (492)
...+..|..+.. +..-|++++++|+|..|.+++.....++..+ +++.|++.||+|+|.++.+|.++..+|..++...
T Consensus 10 ~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~- 88 (410)
T TIGR00885 10 SLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA- 88 (410)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-
Confidence 334444554444 3677999999999999999987777777764 8999999999999999999999999997654322
Q ss_pred hcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhH-HHHH
Q 039263 115 TGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKA-LILL 192 (492)
Q Consensus 115 ~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~-fllf 192 (492)
...+ +++.+....++.|.|.+..+++.-....+..|+ +|+...++..++.++|+.+-..+...++..+... -..
T Consensus 89 -~~~~--~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~- 164 (410)
T TIGR00885 89 -AEIM--NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD- 164 (410)
T ss_pred -Hhhc--cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh-
Confidence 2222 356666677888999999988777777778875 5898999988999888877655544443211000 000
Q ss_pred HHHHHHHHHHhhhhcccccccccc---chhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhh
Q 039263 193 IAWLPAAISFVFLRTFRIIKIVRQ---ANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPI 269 (492)
Q Consensus 193 la~~~~~v~~~~~~~i~~~~~~~~---~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~ 269 (492)
...+..+..++ +.+....+ . .|+++..+. +.+.++..
T Consensus 165 -------------~~~~~~~~~~~~~~~~~~~~w~-~--------~fl~~a~~~----------------~~~~~~~~-- 204 (410)
T TIGR00885 165 -------------VLDKLSPEELSAIKHSDLASVQ-T--------PYMIIGAVV----------------LAVALLIM-- 204 (410)
T ss_pred -------------hhhhcCHHHHHHHHHHHHHHHH-H--------HHHHHHHHH----------------HHHHHHHH--
Confidence 00000000000 00111111 1 111111000 00000000
Q ss_pred hhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHH
Q 039263 270 AIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIAT 349 (492)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~ 349 (492)
..+ .|+. +. ++ + ++++ . ..+.++.+|++++|...+..
T Consensus 205 --~~~-----------------~p~~-~~-~~----------~---------~~~~-~--~~~~~~~~~~~~~~~~~l~~ 241 (410)
T TIGR00885 205 --LTK-----------------MPAL-NH-SD----------A---------KQIS-F--SASLSRLARIRHYREGVIAQ 241 (410)
T ss_pred --Hhc-----------------CCCC-Cc-cc----------c---------cccc-c--hhhHHHHHhChhHHHHHHHH
Confidence 000 0000 00 00 0 0000 0 11345788999999988877
Q ss_pred HhhccceeEEecchhHHHhhcCC--CCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 039263 350 TCGVGGTLTAIDNLGQIGSSLGY--PARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPF 427 (492)
Q Consensus 350 ~~~~g~Gl~~i~n~~~I~~slg~--~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll 427 (492)
++-.|......++.....+..+. ++..++...+..-..-.+||+++|++.||+.+|+ .+.+..+...+.+++
T Consensus 242 f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~------~l~i~~~~~~~~~ll 315 (410)
T TIGR00885 242 FFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK------VLMAYAIIGMALCLG 315 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence 77777665555566666655432 2222344555555777999999999999995432 344444455555444
Q ss_pred HHhcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCC
Q 039263 428 IAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKY 466 (492)
Q Consensus 428 ~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~ 466 (492)
....+........+++|++.+.+|++.-++..+..|.+.
T Consensus 316 ~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~ 354 (410)
T TIGR00885 316 SIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT 354 (410)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 444333344667778899999999999999999998443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=137.72 Aligned_cols=295 Identities=20% Similarity=0.250 Sum_probs=201.9
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
.+.++.+.+.+.+++|.++.|.+.+.....++..+ .++.|.+.||+|+|..+.++.++..++....... + +.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~--~~ 87 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----S--SL 87 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----c--cH
Confidence 56788888999999999999999987777777654 8999999999999999999999999998766543 2 25
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISF 202 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~ 202 (492)
+.+.....+.|.+.+..+.+......+++|+ +|+++.++......+++.+-..+...+.+...-
T Consensus 88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------------- 152 (352)
T cd06174 88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGW--------------- 152 (352)
T ss_pred HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH---------------
Confidence 6666677788888888888888889999996 899999998888777766654433322211000
Q ss_pred hhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
+..+. +. ++..++..+ .. ...
T Consensus 153 -----------------~~~~~----~~---~~~~~~~~~------------------~~--~~~--------------- 173 (352)
T cd06174 153 -----------------RWLFL----IL---AILGLLLAL------------------LL--LFL--------------- 173 (352)
T ss_pred -----------------HHHHH----HH---HHHHHHHHH------------------HH--HHH---------------
Confidence 01111 10 000000000 00 000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
+ +++|.+.+..++.......+...
T Consensus 174 ------------------------------------------~--------------~~~~~~~~~~~~~~~~~~~~~~~ 197 (352)
T cd06174 174 ------------------------------------------L--------------RLLLLLALAFFLLSFGYYGLLTY 197 (352)
T ss_pred ------------------------------------------H--------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 0 45555555555544443334444
Q ss_pred hhHHHhhc-CCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHH
Q 039263 363 LGQIGSSL-GYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAAS 440 (492)
Q Consensus 363 ~~~I~~sl-g~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~ 440 (492)
..++.++. +.++.+.+...+...+.+..|++.+|.++||.+||++ .+.+...+..++.+...... ...+++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 272 (352)
T cd06174 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-----LLLIGLLLAALGLLLLALAPSLALLLVAL 272 (352)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44444443 6666666777889999999999999999999976532 44455555566555443333 33567788
Q ss_pred HHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 441 VIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 441 ~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
.+.|++.+..+...++.+.|.+..++.++.+++......+|
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG 313 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999899998888765444333
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=143.87 Aligned_cols=378 Identities=11% Similarity=0.023 Sum_probs=210.7
Q ss_pred chHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
++|..+++..+..+.... .-.-++--|++.+++|.++.|.+++.++..++.. ..++.|++.||+|+|.++++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 567766665555555544 4455666899999999999999998666666654 57899999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC--CCCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP--ESRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP--~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
+|..+.. ..++ .|.+...-.+.|.|.+..+.++.....++|+ ++||++.|+.....++|..+-..+ ..++
T Consensus 83 ~~~~~~~-----~a~~--~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l-gg~l 154 (495)
T PRK14995 83 LASLAAA-----FSPT--ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV-GGIL 154 (495)
T ss_pred HHHHHHH-----HcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 8875433 2233 5666666677788888877777777779984 479999999988888776554444 4444
Q ss_pred CCCh--hHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHH
Q 039263 183 GDNS--KALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASL 260 (492)
Q Consensus 183 ~~~~--~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~ 260 (492)
.+.. +.-++.......+..++...+++..|.++++ +. .+... .....+.........+.. + +..........
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~-~~-d~~g~--~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~ 228 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQ-PL-NLGHA--LMLIVAILLLVYSAKTAL-K-GFLSLWVTSLT 228 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CC-ChHhH--HHHHHHHHHHHHHHHhcc-c-cCCchHHHHHH
Confidence 3322 2222222211212222222222221111110 00 00000 000011111111111110 0 00000000000
Q ss_pred HHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcch
Q 039263 261 VLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSI 340 (492)
Q Consensus 261 ~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~ 340 (492)
+++-........ ..|.+ .++| .-.++++|++
T Consensus 229 ~~~~~~~l~~f~-~~e~~-------------------------------------------~~~p-----~~~~~lf~~~ 259 (495)
T PRK14995 229 LLTGALLLGLFI-RTQLA-------------------------------------------ASRP-----MIDMRLFTHR 259 (495)
T ss_pred HHHHHHHHHHHH-HHHhc-------------------------------------------CCCC-----CcCHHHhCCc
Confidence 000000000000 10000 0001 1115788889
Q ss_pred hHHHHHHHHHhhccceeEEecchhHHHh-hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQIGS-SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~I~~-slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
.|+...+..++....-........+..| ..|+++.+++......++...++.++.|.+.||+++| ..+....+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~~~g~~ 333 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR------LVATGGMA 333 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHH
Confidence 9887766555533221111112222333 3688877888888889999999999999999999643 23444455
Q ss_pred HHHHHHHHHHh-c--CCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 420 FSCVGHPFIAY-G--IPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 420 l~~~~~ll~~~-~--~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
++.++..++.. . ... ..+...++.|++.|..+......+.+....++.+.-.+.
T Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (495)
T PRK14995 334 LSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI 391 (495)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence 55555433322 1 122 345667788999998888777777888877777765555
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=140.11 Aligned_cols=320 Identities=14% Similarity=0.159 Sum_probs=200.7
Q ss_pred ccccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
=+.||.-.+++++.+|+|..|..++ ++-...|+.+=++-|++.||+|||.+..++.++..+= .+|+.+...-++ +
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP--~~~~~~a~~~~~--~ 105 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP--CLGLAFAVTYPS--T 105 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH--HHHHHHHccCCc--h
Confidence 4677888899999999999999996 8888888888999999999999999999898887766 344455555443 5
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISF 202 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~ 202 (492)
|++...+.+.|.+ |..+..++....+|||+ |+|+|.||--++. +|.++... +.|.++..
T Consensus 106 ~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN-~G~av~q~------------------~~P~v~~~ 165 (417)
T COG2223 106 WQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAGAGN-LGVAVAQL------------------VAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhcccc-ccHHHHHH------------------HHHHHHHH
Confidence 8888887777765 34456889999999985 6899999976333 44444422 13433322
Q ss_pred hhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
.+.-.. +... .+|+....+.. + ++-. ..+
T Consensus 166 ~g~~~w-----------~~~~----------~i~~~~l~v~~-----------------v--~~~~---~~~-------- 194 (417)
T COG2223 166 FGFLAW-----------RNVA----------GIYVVALAIAA-----------------V--LAWL---GMN-------- 194 (417)
T ss_pred HhhHHH-----------HHHH----------HHHHHHHHHHH-----------------H--HHHH---HhC--------
Confidence 221000 0000 11111111100 0 0000 000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
|.++... . .++.. +...+...+++|-|.+-+.++..-|+=+-+.+-
T Consensus 195 ---------d~p~~r~---~--------------------~~~~~--~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~ 240 (417)
T COG2223 195 ---------DVPEHRA---S--------------------VKPQL--PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAY 240 (417)
T ss_pred ---------CChhhhc---c--------------------ccccc--hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 00000 123456788999999999888877775555566
Q ss_pred hhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-------Cc
Q 039263 363 LGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-------PN 434 (492)
Q Consensus 363 ~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-------~~ 434 (492)
..+..++ .|.+..+++...+++...+.+-|...|.+|||++.+| . +.+.+..++++...+...+ +.
T Consensus 241 l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-----v-~~~~f~~~~~~~~~l~~~~~~~~~~~~~ 314 (417)
T COG2223 241 LPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-----V-TLAVFVGMALAAALLSLFLTGFGHGGSF 314 (417)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-----H-HHHHHHHHHHHHHHHHccccccccCcch
Confidence 6666664 5777777788999999999999999999999997543 2 3334444555444332221 11
Q ss_pred h-----hHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHH
Q 039263 435 S-----LYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484 (492)
Q Consensus 435 ~-----l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l 484 (492)
. +....+..|++.|+.|-..|.+-.+ +.|.-=|++.....+|.+.
T Consensus 315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-----~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-----ETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHHHHHHHHHHHhccCcchheeechHHHHh-----hhhHHHHHHHHhccccccc
Confidence 1 2333445588889999999988775 5555555555555555433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=141.16 Aligned_cols=295 Identities=12% Similarity=0.050 Sum_probs=171.9
Q ss_pred ccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 039263 47 MFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQ 125 (492)
Q Consensus 47 ~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~ 125 (492)
....+-|++++++|+|.+|.+++.....++..+ .++.|++.||+|+|.++.+|.++..+++.+... .++ +|.
T Consensus 24 ~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~-----~~~--~~~ 96 (381)
T PRK03633 24 VLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL-----MVG--FWS 96 (381)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc--HHH
Confidence 344668888899999999999987777777654 889999999999999999999988888754332 222 555
Q ss_pred HHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhh
Q 039263 126 MCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVF 204 (492)
Q Consensus 126 l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~ 204 (492)
+.+...+.|.+.+...........++.| ++||++.|+......+|..+-..+...+.+.
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------------- 156 (381)
T PRK03633 97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE-------------------- 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------------
Confidence 5556677787777665554444455554 6899999987776666655543322211110
Q ss_pred hhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCC
Q 039263 205 LRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKK 284 (492)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~ 284 (492)
..+ ...+. ..+. ... .+ +.... +.
T Consensus 157 --~~~----------~~~~~----~~~~-----~~~--------------------~~-----~~~~~-~~--------- 180 (381)
T PRK03633 157 --LMS----------VLPWV----TGLV-----LAA--------------------IL-----PLLFT-RI--------- 180 (381)
T ss_pred --ccc----------hHHHH----HHHH-----HHH--------------------HH-----HHHHh-cc---------
Confidence 000 00000 0000 000 00 00000 00
Q ss_pred CccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHh-hccceeEEecch
Q 039263 285 PSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTC-GVGGTLTAIDNL 363 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~-~~g~Gl~~i~n~ 363 (492)
++++ + + +++ +.+.++.+|++.||......+. +...+.. .+-+
T Consensus 181 -------~~~~------~---------~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 223 (381)
T PRK03633 181 -------LNQQ------A---------E----------NHD----STSIWPMLKLRQARLGVNGCIISGIVLGSL-YGLM 223 (381)
T ss_pred -------cCCC------C---------C----------CCC----CCCHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHH
Confidence 0000 0 0 000 1134677888888875442222 1111111 1123
Q ss_pred hHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 039263 364 GQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVII 443 (492)
Q Consensus 364 ~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~li 443 (492)
....+..|.++.+.+..+++..+.+..||+..|++.||+++| ..+.....++.++.+++. ..........+.
T Consensus 224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~------~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 295 (381)
T PRK03633 224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL------LVLRVQVFVVILGSIAML--SQAAMAPALFIL 295 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH------HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence 444556677766677888999999999999999999999554 334444444444443322 122333455566
Q ss_pred HhhhcchhhhHHHHHHHhhcCCCccc
Q 039263 444 GFCFGAQWPLLFAIISEIFGLKYYST 469 (492)
Q Consensus 444 G~~~G~~~~~~P~i~se~FG~k~~g~ 469 (492)
|++.+..+....+.+.|....++.+.
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~ 321 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVA 321 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHH
Confidence 77766666666666778876655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-13 Score=137.50 Aligned_cols=126 Identities=11% Similarity=-0.039 Sum_probs=87.5
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHH-HhcCCCCch
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLA-VTGRIPKPQ 122 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~-~~g~i~~~~ 122 (492)
....++....+++++|+|.+|++++..+..++.. ..++.|.+.||+|+|.++++|.+...++.....+. ........+
T Consensus 32 ~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (392)
T PRK12382 32 GLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFK 111 (392)
T ss_pred HHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHH
Confidence 3444556667899999999999998555555554 58999999999999999998887766553222111 111111123
Q ss_pred hHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhh
Q 039263 123 VWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLS 170 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLs 170 (492)
++.+...-.+.|.|.+...++......+++| ++||++.|+......++
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g 160 (392)
T PRK12382 112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGA 160 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHH
Confidence 4555556677888888888888777888997 67999999865444333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-13 Score=138.94 Aligned_cols=122 Identities=7% Similarity=-0.031 Sum_probs=92.2
Q ss_pred cccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 039263 46 YMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVW 124 (492)
Q Consensus 46 Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~ 124 (492)
+..+..-|++++++|+|.+|.+++.....++... .++.|++.||+|+|.++.++.++..++..+... .+ +.|
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~-----~~--~~~ 92 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL-----SS--SYL 92 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH-----hC--cHH
Confidence 4555677999999999999999987767777765 789999999999999999999988888654332 22 256
Q ss_pred HHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHH
Q 039263 125 QMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 125 ~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~ 174 (492)
.+....++.|.+.+...........+++|+ +|+.+.|+..+...++..+-
T Consensus 93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 143 (382)
T PRK10091 93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLG 143 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHh
Confidence 666666778887777666556667789986 68888887666655555444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=138.79 Aligned_cols=361 Identities=8% Similarity=-0.011 Sum_probs=194.8
Q ss_pred cccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 039263 44 ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQ 122 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~ 122 (492)
..+.++.+-|.+.+++|+|+.+.+++.....++. ...++.|++.||+|+|.+.+++.++..+++.+.. + .+ +
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~---~~--~ 97 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA--L---SG--T 97 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH--H---hC--C
Confidence 3456677889999999999999888755555654 3578999999999999999988888777765422 1 12 2
Q ss_pred hHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHH
Q 039263 123 VWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGD-NSKALILLIAWLPAAI 200 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~-~~~~fllfla~~~~~v 200 (492)
.+.+....++.|.|.+...........+++|+ +||++.|+......+++.+-..+...+.+. +-..-+........+.
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45566666778888887777777778899985 689998887766666665544443333321 1122222222111111
Q ss_pred HHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhc
Q 039263 201 SFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLR 280 (492)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~ 280 (492)
.++.....+..+.++.+.+..... .. ..+...+.....++. . ............+..+.. ......+|
T Consensus 178 ~~~~~~~~~~~~~~~~r~~~~~~~---~~--~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~---- 245 (471)
T PRK10504 178 AIATLMLMPNYTMQTRRFDLSGFL---LL--AVGMATLTLALDGSK-G-LGLSPLAIAGLVAVGVVA-LLLYLLHA---- 245 (471)
T ss_pred HHHHHHhCCCccccCCCCChHHHH---HH--HHHHHHHHHHHhcCC-c-CCcchHHHHHHHHHHHHH-HHHHHHHH----
Confidence 111111111111000000000000 00 001111111111110 0 000000000000000000 00001100
Q ss_pred cCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEe
Q 039263 281 KSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAI 360 (492)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i 360 (492)
++ + ++| .-..+.+|+++|+......++.... ....
T Consensus 246 ------------~~-------~--------------------~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~ 280 (471)
T PRK10504 246 ------------RN-------N--------------------NRA-----LFSLKLFRTRTFSLGLAGSFAGRIG-SGML 280 (471)
T ss_pred ------------hc-------C--------------------CCC-----ccCHHHhcccchHHHHHHHHHHHHH-HHHH
Confidence 00 0 000 1113578999999887766654332 2223
Q ss_pred cchh-HHHh-hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc-CCc---
Q 039263 361 DNLG-QIGS-SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG-IPN--- 434 (492)
Q Consensus 361 ~n~~-~I~~-slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~-~~~--- 434 (492)
+... +..+ .+|.++...+.......+....++.++|.++||++|| ..+.+..+++.+..+++... ...
T Consensus 281 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (471)
T PRK10504 281 PFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR------RVLVATTLGLALVSLLFMLVALLGWYY 354 (471)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3333 3334 3677666666677777888888999999999998543 23444444444443333221 112
Q ss_pred hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 435 SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 435 ~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
.+.+...+.|++.|..++....++.+.+..++.|..+++.
T Consensus 355 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 394 (471)
T PRK10504 355 LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLL 394 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHH
Confidence 1234456678888888888899999999988888887774
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-13 Score=137.10 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFF 105 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~ 105 (492)
||..........+-..| .+.+..+-|++++++|.|..+.+++.....++..+ .++.|++.||+|+|..+++|.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i 80 (392)
T PRK10473 2 SRFLLCSFALVLLYPAG-IDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII 80 (392)
T ss_pred chHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence 56554333333333222 34444789999999999999998876666666654 78999999999999999999998888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhH
Q 039263 106 GYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSG 171 (492)
Q Consensus 106 Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa 171 (492)
++.+.... + +.+.+.....+.|.+.+..+........+++| ++|+++.|+..+...+++
T Consensus 81 ~~~~~~~~-----~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~ 140 (392)
T PRK10473 81 ASLLCSLA-----E--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP 140 (392)
T ss_pred HHHHHHHh-----C--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 87654422 2 24445555566778888777777778889997 579999888765554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=139.29 Aligned_cols=336 Identities=12% Similarity=0.048 Sum_probs=172.3
Q ss_pred cchHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
++-|...+.-.+..++.| ..++.++..+++++|+|+.|++++ +..........++.|++.||+|+|.++.++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~ 87 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWS--SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLL 87 (420)
T ss_pred cchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 355555555555555444 357888889999999999999997 54444444569999999999999999877666554
Q ss_pred HHHHHHHH-HHhcCCCCchhHHHHHHHHHhhccccchhhh---hhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHH
Q 039263 105 FGYFMIWL-AVTGRIPKPQVWQMCLYICIGANSQSFANTG---ALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHA 180 (492)
Q Consensus 105 ~Gy~~~~~-~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a---~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~ 180 (492)
++...... ....... ...+.. ..+++...+....+ .+..-.++++++||++.|...+...+|..+-..+...
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 163 (420)
T PRK09528 88 VLFGPFFIYVFAPLLQ-YNILLG---AIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGI 163 (420)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHH
Confidence 44322111 1111100 011111 11222222222222 2222234567788999998887777776665433222
Q ss_pred HcCCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHH
Q 039263 181 FYGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASL 260 (492)
Q Consensus 181 ~f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~ 260 (492)
+.+.+ .+..|. ...+ ..++..
T Consensus 164 l~~~~---------------------------------~~~~f~----~~~~--~~~~~~-------------------- 184 (420)
T PRK09528 164 LFNIN---------------------------------PQINFW----LGSG--SALILL-------------------- 184 (420)
T ss_pred HHhcC---------------------------------chHhHH----HHHH--HHHHHH--------------------
Confidence 11100 011121 1000 000000
Q ss_pred HHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcch
Q 039263 261 VLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSI 340 (492)
Q Consensus 261 ~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~ 340 (492)
+.....+++ ++++.+..+++ + .+++ ...-...++.+|++
T Consensus 185 -------~~~~~~~~~---------------~~~~~~~~~~~---------~---------~~~~-~~~~~~~~~~l~~~ 223 (420)
T PRK09528 185 -------VLLFFAKPD---------------APSTAKVANAL---------G---------ANAS-AVSLKDALALLKLP 223 (420)
T ss_pred -------HHHhccccc---------------ccchhhhccch---------h---------cccc-cccHHHHHHHccCC
Confidence 000000000 00000000000 0 0000 00011346788999
Q ss_pred hHHHHHHHHHhhccceeEEecchhHHHhh----cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQIGSS----LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF 416 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~I~~s----lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i 416 (492)
.+|.+.+..++....-.++.........+ .+.+....+...++..+.+..|.+.+|.++||+++|+ .+.+
T Consensus 224 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~ 297 (420)
T PRK09528 224 KFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN------ALLL 297 (420)
T ss_pred CeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch------hhHH
Confidence 99876654333221111111112222222 2333334456667888899999999999999997653 2334
Q ss_pred HHHHHHHHHHHHHhc-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 417 VLLFSCVGHPFIAYG-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 417 ~~~l~~~~~ll~~~~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
..++..++.++.... ....+++...+.|+.++......-..+.|.+..|+.++.|+.
T Consensus 298 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 355 (420)
T PRK09528 298 AGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLV 355 (420)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeee
Confidence 444444444443332 233455556667777777766666788999999888887765
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-13 Score=138.04 Aligned_cols=138 Identities=19% Similarity=0.088 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHH
Q 039263 28 RWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFG 106 (492)
Q Consensus 28 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~G 106 (492)
.|..+..+++.++...+.+.+.-.-+++++++|+|++|++.+.....++.. .+++.|.+.||+|+|.++.++.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 84 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG 84 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence 445555555555544444555555567899999999999998666677765 4899999999999999999998888777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeehhHhhhhhHH
Q 039263 107 YFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLLKGFVGLSGA 172 (492)
Q Consensus 107 y~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~~a~~GLsa~ 172 (492)
..+.... + +++.+.....+.|.|.+...........++||++ |+.+.+......++++.
T Consensus 85 ~~~~~~~-----~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (401)
T PRK11043 85 SLGMLWV-----E--SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPA 144 (401)
T ss_pred HHHHHHh-----c--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 6544321 2 2455555555666666655555455567889875 55555544444444433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=136.12 Aligned_cols=354 Identities=12% Similarity=0.093 Sum_probs=196.0
Q ss_pred cchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
++.++-++.-..+.+..|. .-.=+.+-|++++.+|+|..|.+++.+...++..+ +++.|.+.||+|+|.++.+|.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4455544444444444444 34456678999999999999999987777777654 899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCC-ceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRG-SVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG-~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
.+|..++... ... .+++.+...-++.|.|.+..++++-....++.|++|+ ...++..++.++|+.+=..+...+.
T Consensus 102 ~~~~~l~~~~--~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 102 ALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHH--Hhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998654311 122 2356666677788999998888877777777777655 4677777777776555433221111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHH-HHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHH
Q 039263 183 GDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFY-KMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLV 261 (492)
Q Consensus 183 ~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
..+ .|....- ...+..+.+ .......+. .+ -..|..+..+.. .
T Consensus 178 ~~~----------~~~~~~~---~~~~l~~~~-~~~w~~~~~~~w------~~~f~~~~~v~~----------------~ 221 (438)
T PRK10133 178 LSN----------VPHQSQD---VLDKMTPEQ-LSAYKHSLVLSV------QTPYMIIVAIVL----------------L 221 (438)
T ss_pred hcC----------Ccccchh---hhhccChhh-HHHHHHHHHHHH------HHHHHHHHHHHH----------------H
Confidence 000 0000000 000000000 000000000 00 001111000000 0
Q ss_pred HHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchh
Q 039263 262 LILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSID 341 (492)
Q Consensus 262 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~ 341 (492)
+.++.. ... .|+. . .++ + + ++ ..++ .-.+.++.+|+++
T Consensus 222 ~~~~~~-----~~~----------------~p~~-~--~~~----~--~-~~--------~~~~---~~~~~~~ll~~~~ 259 (438)
T PRK10133 222 VALLIM-----LTK----------------FPAL-Q--SDN----H--S-DA--------KQGS---FSASLSRLARIRH 259 (438)
T ss_pred HHHHHH-----Hhc----------------CCCC-C--ccc----c--c-cc--------cccc---hhhhHHHHHhCch
Confidence 000000 000 0000 0 000 0 0 00 0000 0113467899999
Q ss_pred HHHHHHHHHhhccceeEEecchhHH-Hh-hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 342 MLIIFIATTCGVGGTLTAIDNLGQI-GS-SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 342 FWllf~~~~~~~g~Gl~~i~n~~~I-~~-slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
||...+..++..+.-....+-.... .+ ..|+++.+++...+.+.++..+||+..|.+.||+++|+ .+....+
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~------~l~~~~~ 333 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK------VLAAYAL 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 9987665555443321111222222 23 46888888888899999999999999999999996543 2333333
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcc
Q 039263 420 FSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYS 468 (492)
Q Consensus 420 l~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g 468 (492)
+..+.+++....+...-.....+.|++.|.++...-+...|.++ ||-+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~ 381 (438)
T PRK10133 334 IAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTK 381 (438)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhc
Confidence 33333333322222223456678899999999999999999997 4443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.1e-13 Score=137.73 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=97.1
Q ss_pred cccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHH
Q 039263 24 VLTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSI 101 (492)
Q Consensus 24 ~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~v 101 (492)
...+.|+..+...+.+++... ...+...-+++++++|+|+.+++.+.....++.. ..++.|.+.||+|+|.++.++.+
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 7 LGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 345666666666666654332 3334444578999999999999987656666654 47899999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeehhHhhhhh
Q 039263 102 MNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLLKGFVGLS 170 (492)
Q Consensus 102 l~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~~a~~GLs 170 (492)
+..++..+.... + +.|.+.....+.|.+.+...........++||++ |+.+.++......++
T Consensus 87 ~~~~~~~~~~~~-----~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
T PRK15402 87 FFILTCLAILLA-----Q--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLA 149 (406)
T ss_pred HHHHHHHHHHHH-----c--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 888776554322 2 2455655666777777776666777778899864 566666655544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=134.11 Aligned_cols=325 Identities=14% Similarity=0.050 Sum_probs=175.7
Q ss_pred ccccccccHHHHHhhCC--ChhhhhHHHHHhhhhc------cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 039263 45 TYMFGLYSSDIKTSLGY--DQSTLNLLSFSKDVGG------NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTG 116 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~--sq~~l~~is~~~~vg~------~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g 116 (492)
.|.++...+.+++++.+ ++++.+++.+...++. ..+++.|++.||+|+|.++.++.++..++..+.... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~ 86 (394)
T TIGR00883 9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL--P 86 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC--C
Confidence 35667778888888765 3344444322221111 236789999999999999999999888887654432 1
Q ss_pred CCCCchh---HHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHH
Q 039263 117 RIPKPQV---WQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILL 192 (492)
Q Consensus 117 ~i~~~~~---~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllf 192 (492)
....... +.+...-++.|.+.+....++.....+++| ++||++.++......+|..+-..+.....
T Consensus 87 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~---------- 156 (394)
T TIGR00883 87 SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS---------- 156 (394)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1110001 124445567788888888888888889997 57998888877666665554432211100
Q ss_pred HHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhh
Q 039263 193 IAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIV 272 (492)
Q Consensus 193 la~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~ 272 (492)
. ... . ...+....+..+.+. ++..++. .. .. ..
T Consensus 157 ------------~-~~~---~--~~~~~~~w~~~~~~~---~~~~~~~--------------------~~----~~--~~ 189 (394)
T TIGR00883 157 ------------Y-LLG---D--DALLEWGWRIPFLVS---AVLVLIG--------------------LY----LR--RN 189 (394)
T ss_pred ------------H-hcC---H--HHhhccchHHHHHHH---HHHHHHH--------------------HH----HH--Hh
Confidence 0 000 0 000000111000010 0000000 00 00 00
Q ss_pred hHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchh--HHHHHHHHH
Q 039263 273 IKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSID--MLIIFIATT 350 (492)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~--FWllf~~~~ 350 (492)
.+|+ ++.+.. ++ ++++ ...+.++.++++. +|......+
T Consensus 190 ~~~~----------------~~~~~~-~~--------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T TIGR00883 190 LEET----------------PVFEKA-QE--------------------KHKK---KRGPIRETLTKHRKPFLLGLGLVI 229 (394)
T ss_pred cCCC----------------hhHHHH-Hh--------------------cccc---ccCCHHHHHHhchHHHHHHHHHHH
Confidence 0100 000000 00 0000 0123466777765 776666555
Q ss_pred hhccceeEEecchhHHH-hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHH-H
Q 039263 351 CGVGGTLTAIDNLGQIG-SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPF-I 428 (492)
Q Consensus 351 ~~~g~Gl~~i~n~~~I~-~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll-~ 428 (492)
+......+.......+. +.+|.++.+.+...++..+.+.++++.+|.++||++||+ ..+....+....+..+ .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~~~~~~ 304 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-----VLIIFTVLAALLAVPLLM 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHHHHHHHH
Confidence 43332222233344455 446777666777788899999999999999999997643 1221111111122111 1
Q ss_pred Hh--cCCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 429 AY--GIPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 429 ~~--~~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
.. .... .+.....+.|+++|..++...+.+.|.+..++-++-+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 352 (394)
T TIGR00883 305 ALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASL 352 (394)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeee
Confidence 11 1222 334556677999999999999999999998877776665
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=137.01 Aligned_cols=139 Identities=12% Similarity=0.005 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHH-HHHhhhhc-c-----ccccceeeeccCCcHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGG-N-----VGVLSGLINEITPPWVVL 96 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~-~-----~~~~~G~~~D~~Gpr~~~ 96 (492)
+.+||+......+..++... ...++.+.|+++++++.++.|...+ .+...++. + ..++.|.+.||+|+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 10 RESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 45677765555555555555 5678999999999999999886543 22222222 2 257889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhH--------HHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhh
Q 039263 97 AIGSIMNFFGYFMIWLAVTGRIPKPQVW--------QMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFV 167 (492)
Q Consensus 97 ~iG~vl~~~Gy~~~~~~~~g~i~~~~~~--------~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~ 167 (492)
+++.++..++..+.. ..++ ++ .+.+.-++.|.+.+....++.....+|+| ++||++.++.....
T Consensus 90 ~~~~~~~~~~~~l~~-----~~~~--~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~ 162 (434)
T PRK15075 90 IVTLSIMASGTLLIA-----FVPG--YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQ 162 (434)
T ss_pred HHHHHHHHHHHHHHH-----hCCc--HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHH
Confidence 999998887765433 2222 22 23445567888888888888888999998 57999999876655
Q ss_pred hhh
Q 039263 168 GLS 170 (492)
Q Consensus 168 GLs 170 (492)
.++
T Consensus 163 ~~g 165 (434)
T PRK15075 163 QVA 165 (434)
T ss_pred HHH
Confidence 444
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=147.32 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=112.9
Q ss_pred cchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
+.+|..++...+..+..|. ....+...|++++++|++..+.+++..+..+|..+ .++.|.+.||+|+|.+++++.++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4567666666666666665 44567778999999999999999987777777765 789999999999999999988887
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHH
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
.++..+...+ ++ ++.+.+.-++.|+|.+.....+.....+++|. +||.+.++...+..+|+.+-..+.
T Consensus 243 ~i~~ll~afa-----~s--~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 243 GFFAFFSSFV-----QG--YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHH-----hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776544322 22 45566667788888888888888889999985 699999998888888777665544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=136.90 Aligned_cols=139 Identities=13% Similarity=-0.053 Sum_probs=91.7
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhC---CChhhhhHH---HHHhhhhcc-ccccceeeeccCCcHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLG---YDQSTLNLL---SFSKDVGGN-VGVLSGLINEITPPWVVL 96 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~---~sq~~l~~i---s~~~~vg~~-~~~~~G~~~D~~Gpr~~~ 96 (492)
..+||..++.+.+....-.- .+.++...+.++++++ .+..|...+ -....++.. .+++.|.+.||+|+|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l 96 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM 96 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45677666666555555444 5668888899999984 555543332 222223332 377899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehh
Q 039263 97 AIGSIMNFFGYFMIWLAVTGRIP--KPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLK 164 (492)
Q Consensus 97 ~iG~vl~~~Gy~~~~~~~~g~i~--~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~ 164 (492)
.++.++..++....... .+... ..+.+++...-++.|.|.+..+.++.....+|+| ++||++.++..
T Consensus 97 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~ 166 (432)
T PRK10406 97 LISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQY 166 (432)
T ss_pred HHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHH
Confidence 99999888876543321 11100 0011234556678899999999999999999997 57898766543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=138.82 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhh-hhHHH-----HHhhhhcc-ccccceeeeccCCcHHHHHHHHH
Q 039263 30 FMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQST-LNLLS-----FSKDVGGN-VGVLSGLINEITPPWVVLAIGSI 101 (492)
Q Consensus 30 ~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~-l~~is-----~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~v 101 (492)
..++.+.+..+.-+- .+.++...+.+++.++.+..+ .+++. .+..++.- .+++.|.+.||+|+|.++.++.+
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344444444444443 444555677888888655433 22221 22223333 37899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCch---hH---HHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhh
Q 039263 102 MNFFGYFMIWLAVTGRIPKPQ---VW---QMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFV 167 (492)
Q Consensus 102 l~~~Gy~~~~~~~~g~i~~~~---~~---~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~ 167 (492)
+..++-.+.. ..++.. .| ++.++-++.|.|.+..++++.....+||| ++||++.++...+.
T Consensus 96 l~~i~~~~~a-----~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~ 163 (490)
T PRK10642 96 IMSISTFCIG-----LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGS 163 (490)
T ss_pred HHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 8888865433 223211 11 24556678899999999999999999997 57999888765443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=131.25 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=98.1
Q ss_pred cccccccHHHHHhhCCChhhhhHHH-HHhhhhccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 039263 46 YMFGLYSSDIKTSLGYDQSTLNLLS-FSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVW 124 (492)
Q Consensus 46 Y~fS~ys~~L~~~~~~sq~~l~~is-~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~ 124 (492)
=.|++=.|+|+|++++|.+|+..++ ......+..=+..|.+.||..||....+|-++.++--.++. .. .+++
T Consensus 46 knF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~G-----fs--~s~~ 118 (448)
T COG2271 46 KNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG-----FS--PSLF 118 (448)
T ss_pred HhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHh-----hh--hHHH
Confidence 3689999999999999999999984 44444445568999999999999988888887766554433 22 2466
Q ss_pred HHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHH
Q 039263 125 QMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 125 ~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
.+.++..+-|.=+|+.-.+|-.+..+|||+ +||+..++--...-.|+++...+.
T Consensus 119 ~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 119 LFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 666666666666677778999999999996 699999998888778888885554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-12 Score=134.52 Aligned_cols=143 Identities=10% Similarity=0.046 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhhCcc-cccccccHHHHHhh-----CCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHH
Q 039263 30 FMVFASLLIMAVAGAT-YMFGLYSSDIKTSL-----GYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 30 ~~l~a~~~i~l~~Gt~-Y~fS~ys~~L~~~~-----~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
..+..+.+..+.-|-. -..+.-.+.+++++ +.+..+.+++.....+|..+ .++.|++.||+|+|.++.++.++
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~ 95 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELII 95 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3443334444444432 22233345565542 34555666777777777755 78999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i 173 (492)
..++..+........ +...++.+...-.+.|.+.+..++.+.....++|| ++||++.++...+..+|..+
T Consensus 96 ~~v~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 96 MIIATVASGLSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHccCcc-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 888865544321111 10114556667778889999999999999999998 56999999987776665543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=128.47 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=88.0
Q ss_pred cccchHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHH
Q 039263 24 VLTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 24 ~~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.+..||+.+...+.. +..-..+.+...-|++.+++|+|+.+.+++.....++.. ..++.|.+.||+|+|.++.++.++
T Consensus 4 ~~~~~~l~~~~~~~~-~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~ 82 (394)
T PRK11652 4 QRNVNLLFMLVLLVA-VGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSI 82 (394)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence 334555543333332 222223444555688899999999999998666666655 478999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHh
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGF 166 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~ 166 (492)
..++....... + +++.+.....+.|.+.+.....+.....+++| ++|+.+.++....
T Consensus 83 ~~~~~~~~~~~-----~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (394)
T PRK11652 83 FILGTLVALFA-----H--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMG 140 (394)
T ss_pred HHHHHHHHHHH-----c--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 88876554321 2 24556556666777766655555445556777 4677766654433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=132.06 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=90.4
Q ss_pred HHHHHhh--------CCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHH---hcCC-C
Q 039263 53 SDIKTSL--------GYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAV---TGRI-P 119 (492)
Q Consensus 53 ~~L~~~~--------~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~---~g~i-~ 119 (492)
+.+++.+ +++..+.+++.....++..+ .++.|++.||+|+|.+++++.++..++........ .... +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 115 (479)
T PRK10077 36 ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPD 115 (479)
T ss_pred HHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 5566766 88889999987777777754 88999999999999999999998888765544311 0000 1
Q ss_pred Cch-hHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHH
Q 039263 120 KPQ-VWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 120 ~~~-~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~ 174 (492)
+.+ ++.+..+-++.|.+.+..+..+.....+++|+ +||++.|+...+..+|..+-
T Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~ 172 (479)
T PRK10077 116 NTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV 172 (479)
T ss_pred chhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 111 23345566888999999999999999999985 69999999877776665543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=126.79 Aligned_cols=145 Identities=14% Similarity=0.070 Sum_probs=85.9
Q ss_pred HHHhcchhHHHHHHHHHhhccceeEEecchhHH-HhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchH
Q 039263 334 LQALFSIDMLIIFIATTCGVGGTLTAIDNLGQI-GSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPL 412 (492)
Q Consensus 334 ~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I-~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~ 412 (492)
++..+++++|.++...++..+...++....... .+.+|.++.+.+...++..+.+..+++..|.++||++||+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~------ 266 (375)
T TIGR00899 193 RGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR------ 266 (375)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh------
Confidence 346778888887765554433222222223333 3457777666666667777788889999999999986543
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc----eehhhHHHHHH
Q 039263 413 LFTFVLLFSCVGHPFIAYG-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG----AVASPVGAYIL 485 (492)
Q Consensus 413 ~l~i~~~l~~~~~ll~~~~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~----~la~~~gs~l~ 485 (492)
.+.+..+...+..+..... +...+++...+.|+++|.........+.|.+. ++.++-.++. .++..+|+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 267 LMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222322222222 22234555667789999888888888899885 4555555543 34444554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=130.10 Aligned_cols=141 Identities=16% Similarity=0.243 Sum_probs=104.5
Q ss_pred ccchHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
...+|..+....+..+..+.. +++.+..+++++|+|..+++.+.....+.. ..+++.|.+.||+|+|.++.++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~ 86 (400)
T PRK11646 9 NLGKYFLLIDNMLVVLGFFVV--FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR 86 (400)
T ss_pred cccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence 345578887777777766444 777888899999999999999755444444 45899999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHH
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~ 174 (492)
.++...+... + +.|.++....+.|.+.+....+......+++| |+||++.|+......+|..+-
T Consensus 87 ~~~~~~~~~~-----~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig 151 (400)
T PRK11646 87 AAGFATMAIA-----H--EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIG 151 (400)
T ss_pred HHHHHHHHHh-----c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887654321 2 25666666667777777666666666788996 589999998776666654443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=135.75 Aligned_cols=340 Identities=13% Similarity=0.034 Sum_probs=187.4
Q ss_pred HHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHH
Q 039263 31 MVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFM 109 (492)
Q Consensus 31 ~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~ 109 (492)
.+++..+.++..+ ....+-|.+.++++.+..|.+.+.....++..+ .++.|.+.||+|+|.++.++.++..+++.+
T Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 22 VFIARFISIFGLG---LLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIG 98 (417)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHH
Confidence 3344344444433 234455777778888999999987777777654 789999999999999998888887777655
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhH
Q 039263 110 IWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKA 188 (492)
Q Consensus 110 ~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~ 188 (492)
.... ......++|.+....++.|.+.+...++......+++|+ +|+++.++......+|..+-..+.....
T Consensus 99 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~------ 170 (417)
T PRK10489 99 LALN--AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI------ 170 (417)
T ss_pred HHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH------
Confidence 4322 111123355555555666776666667777777899975 6898888866555554433222111110
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhh
Q 039263 189 LILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLP 268 (492)
Q Consensus 189 fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p 268 (492)
... +.+..+. ... ..+++.. +++...
T Consensus 171 --------------------~~~------~~~~~~~----~~~--~~~~~~~---------------------~~~~~l- 196 (417)
T PRK10489 171 --------------------AAG------GVAWNYG----LAA--AGTFITL---------------------LPLLRL- 196 (417)
T ss_pred --------------------HHH------hhHHHHH----HHH--HHHHHHH---------------------HHHHhC-
Confidence 000 0011111 100 0000000 000000
Q ss_pred hhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHH
Q 039263 269 IAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIA 348 (492)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~ 348 (492)
++ .+++ . + + + + ++.+.....++..++++.+|.+++.
T Consensus 197 -----~~----------------~~~~-~--~-~----~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T PRK10489 197 -----PA----------------LPPP-P--Q-P----R--E-------------HPLRSLLAGFRFLLASPVVGGIALL 232 (417)
T ss_pred -----CC----------------CCCC-C--c-c----c--c-------------cchHHHHHHHHHHHcChHHHHHHHH
Confidence 00 0000 0 0 0 0 0 0000001134557788888877654
Q ss_pred HHhhccceeEEecchhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 039263 349 TTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPF 427 (492)
Q Consensus 349 ~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll 427 (492)
.++....+ .+........++ +|.++...+...+...+++.+|++.+|+++||.. +...+....+++.++.++
T Consensus 233 ~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~------~~~~l~~~~~~~~~~~~~ 305 (417)
T PRK10489 233 GGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSAR------PGLLMLLSTLGSFLAVGL 305 (417)
T ss_pred HHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccC------cchHHHHHHHHHHHHHHH
Confidence 43322111 112223344455 6777777777788889999999999999888632 222333444455555544
Q ss_pred HHhcCCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc----eehhhHHHHHHh
Q 039263 428 IAYGIPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG----AVASPVGAYILN 486 (492)
Q Consensus 428 ~~~~~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~----~la~~~gs~l~~ 486 (492)
+...+.. .+.+...+.|++.+.......+++.|.+..++.|+..++. .++.++|+.+..
T Consensus 306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G 369 (417)
T PRK10489 306 FGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG 369 (417)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence 4332222 2345555667777766677778889999877778777764 344555555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-12 Score=133.12 Aligned_cols=127 Identities=10% Similarity=0.042 Sum_probs=83.4
Q ss_pred hhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039263 41 VAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIP 119 (492)
Q Consensus 41 ~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~ 119 (492)
..|....++..++.+++++|+|..|++++.....+.. ...++.|++.||+|+|.++.++.++..+++.++.. . +
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~--~---~ 94 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL--V---N 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH--H---h
Confidence 4455555677788999999999999999754444444 45899999999999999999999988888754432 1 2
Q ss_pred CchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHH
Q 039263 120 KPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 120 ~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~ 174 (492)
+ .|.+.....+.+.+.+....+.-....+-+| ++||++.|+......+|.++-
T Consensus 95 ~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~ig 148 (395)
T PRK10054 95 N--VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVG 148 (395)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHH
Confidence 2 3434333333343333333333333445665 468998888776666654444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=130.75 Aligned_cols=143 Identities=12% Similarity=0.003 Sum_probs=91.4
Q ss_pred cchHHHHHHHHHHHHhhCc-ccccccccHH-HHHhh--CCChhhhhHHHH-----Hhhhhc-cccccceeeeccCCcHHH
Q 039263 26 TGRWFMVFASLLIMAVAGA-TYMFGLYSSD-IKTSL--GYDQSTLNLLSF-----SKDVGG-NVGVLSGLINEITPPWVV 95 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~-L~~~~--~~sq~~l~~is~-----~~~vg~-~~~~~~G~~~D~~Gpr~~ 95 (492)
.+||..+..+.+....-+- ...++...+. +++++ +.++. .+++.. ...++. .-+++.|.+.||+|+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 3555555555555554433 4455556654 45555 67765 344422 122222 235788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCch---h---HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhh
Q 039263 96 LAIGSIMNFFGYFMIWLAVTGRIPKPQ---V---WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVG 168 (492)
Q Consensus 96 ~~iG~vl~~~Gy~~~~~~~~g~i~~~~---~---~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~G 168 (492)
+.++.++..++..+.. ..++.. + +.+...-.+.|.|.+..+.++.....+|+|+ +||++.+....+.+
T Consensus 97 l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~ 171 (438)
T PRK09952 97 LMLTVWMMGIATALIG-----LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYG 171 (438)
T ss_pred HHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 9999888877754332 233211 1 1244455688999999999988899999985 78988888776666
Q ss_pred hhHHHH
Q 039263 169 LSGAIL 174 (492)
Q Consensus 169 Lsa~i~ 174 (492)
+|..+-
T Consensus 172 ~G~~l~ 177 (438)
T PRK09952 172 VGLLLS 177 (438)
T ss_pred HHHHHH
Confidence 665443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=125.46 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=77.1
Q ss_pred ccccccHHHHHhhCCChhhh-----hHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 039263 47 MFGLYSSDIKTSLGYDQSTL-----NLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPK 120 (492)
Q Consensus 47 ~fS~ys~~L~~~~~~sq~~l-----~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~ 120 (492)
.+..+-|++.+++|++..|. +.+.....++. ...++.|.+.||+|+|.++.++.++..++..++... +
T Consensus 32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~- 105 (408)
T PRK09874 32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-----Q- 105 (408)
T ss_pred HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----h-
Confidence 35556777778899986653 44433333333 347889999999999999999988888877654421 2
Q ss_pred chhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHH
Q 039263 121 PQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 121 ~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i 173 (492)
++|.+.....+.|.+.++ +........+++| ++||.+.|+......++..+
T Consensus 106 -~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (408)
T PRK09874 106 -NIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALL 157 (408)
T ss_pred -hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH
Confidence 245555444455555443 3444445567776 57899988876655555433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-12 Score=128.17 Aligned_cols=320 Identities=9% Similarity=-0.004 Sum_probs=174.6
Q ss_pred ccHHHHHhhCCChhhhhHHHHHhhhhccccccceeeeccC-----CcHHHH-HHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 039263 51 YSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEIT-----PPWVVL-AIGSIMNFFGYFMIWLAVTGRIPKPQVW 124 (492)
Q Consensus 51 ys~~L~~~~~~sq~~l~~is~~~~vg~~~~~~~G~~~D~~-----Gpr~~~-~iG~vl~~~Gy~~~~~~~~g~i~~~~~~ 124 (492)
--|.+.++.|+|.+|++.+++...... ..++.|.+.||+ |+|... +++.++..+....+ .+.. +..++|
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l--~~~~--~~~~l~ 84 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL--SFLV--PSTDLP 84 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH--HcCC--cchhHH
Confidence 346778889999999999865544443 388999999998 777764 45555554443222 2221 112345
Q ss_pred HHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHh
Q 039263 125 QMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFV 203 (492)
Q Consensus 125 ~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~ 203 (492)
.+.....+.+...+..+.+.-....+++| ++||.+.|+...++.+|..+-..+...+.
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------------------- 143 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA--------------------- 143 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 55555555566666777777777889996 57999999988777776555533322111
Q ss_pred hhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCC
Q 039263 204 FLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSK 283 (492)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~ 283 (492)
.....+ + ......+..+.+ .++..++. .+......+
T Consensus 144 -----~~~g~~-~-~~~~~wr~~f~i---~ai~~l~~--------------------------~~~~~~~~~-------- 179 (356)
T TIGR00901 144 -----SPEFAN-T-GLITLWGYIFFW---TALLILPG--------------------------LLVTLFLAK-------- 179 (356)
T ss_pred -----hhcccc-c-ccccccHHHHHH---HHHHHHHH--------------------------HHHHHHhcc--------
Confidence 100000 0 000111111111 00100000 000000000
Q ss_pred CCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchh---HHHHHHHHHhhccceeEEe
Q 039263 284 KPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSID---MLIIFIATTCGVGGTLTAI 360 (492)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~---FWllf~~~~~~~g~Gl~~i 360 (492)
|+++. + + ++ + ++ + ++ ...++++.++++. +|.+.+..++.......+.
T Consensus 180 --------e~~~~---~-~----~~-~-~~---------~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T TIGR00901 180 --------EPQED---A-S----VP-K-PL---------T-QA--VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAAT 229 (356)
T ss_pred --------CCCcc---c-c----cc-h-hH---------H-HH--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 00 0 00 0 00 0114456677765 6666554444322211222
Q ss_pred cchhHHHhhcCCCCCccchhhhHHH-hhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh---c-----
Q 039263 361 DNLGQIGSSLGYPARSTTTFVSLVS-IWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAY---G----- 431 (492)
Q Consensus 361 ~n~~~I~~slg~~~~~~~~~Vsl~S-i~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~---~----- 431 (492)
.......+.+|+++.+.+...++.+ +...+|.+++|+++||+++|+ .+.+..++..++..++.. .
T Consensus 230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY------ALLLFGIVQALTNAGFVWLASNGHHDG 303 (356)
T ss_pred HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 3344455567877666666666555 578899999999999997654 233333434443332211 1
Q ss_pred ---CC-chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 432 ---IP-NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 432 ---~~-~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
.. ..+..+.++.++++|..+....++..|.+-+++-|+.+|+...
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 352 (356)
T TIGR00901 304 ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSS 352 (356)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 11 1234455566999999999999999999999999998887654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=127.44 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=92.9
Q ss_pred cccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 039263 46 YMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVW 124 (492)
Q Consensus 46 Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~ 124 (492)
..|.-.-|++.+++|+|..|.+.+..+..++... .++.|.+.||+|+|.++.+|.++..++..++... ++ .+
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~--~~ 80 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QT--ID 80 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----cc--HH
Confidence 4556677888999999999999986666666654 8999999999999999999999888887655432 22 45
Q ss_pred HHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHH
Q 039263 125 QMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 125 ~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~ 174 (492)
.+.....+.|.+.+..+........+++|+ +||++.|+...+.+++..+-
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLA 131 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556667777777777777778889985 68999998877666655443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=126.29 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=92.5
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCC--------CccchhhhHHHhhhhhhhcccchhhHHHh
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPA--------RSTTTFVSLVSIWNYLGRVVAGFASEILL 403 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~--------~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~ 403 (492)
+.++.+|+++||.+++..++....-..+........++.|+++ ...+...++..+....+++..|.++||++
T Consensus 200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g 279 (418)
T TIGR00889 200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG 279 (418)
T ss_pred hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467899999998887766642211111111122233445432 33467788889999999999999999995
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHhcC--C---chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccce
Q 039263 404 KKYKIPRPLLFTFVLLFSCVGHPFIAYGI--P---NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 404 ~~~~~~R~~~l~i~~~l~~~~~ll~~~~~--~---~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
+| ..+.+..++..+...++.... . ..+++..++.|+++|......+.+++|.++.++.|+.+|+..
T Consensus 280 ~r------~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~ 350 (418)
T TIGR00889 280 IK------KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFT 350 (418)
T ss_pred cH------HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 44 345555556666544433321 1 134566778899999888899999999999998998887763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-11 Score=138.82 Aligned_cols=329 Identities=12% Similarity=-0.021 Sum_probs=182.2
Q ss_pred ccccHHHHHhhCCChhh--hhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 039263 49 GLYSSDIKTSLGYDQST--LNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQ 125 (492)
Q Consensus 49 S~ys~~L~~~~~~sq~~--l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~ 125 (492)
.+..+.+.+.++.+++. .+++.++..++. .+++++|.+.||+|+|.+++++.++..++..+..++.. .. ++|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~--~~--~~~~ 105 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY--LG--WFWL 105 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH--Hc--cHHH
Confidence 44555666667776554 355544444544 35889999999999999988887765555444332221 12 2566
Q ss_pred HHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhh
Q 039263 126 MCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVF 204 (492)
Q Consensus 126 l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~ 204 (492)
+.+..++.|.+.+...++......+++| ++||.+.|+......+|..+-..+...+..
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~--------------------- 164 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--------------------- 164 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 6666677788888888888888999998 479999999877766544333222111110
Q ss_pred hhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCC
Q 039263 205 LRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKK 284 (492)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~ 284 (492)
.+.. .. .++....+..+... .+...+.. +++.... ++
T Consensus 165 -~~~~-~~---~~~~~~~~~~~~~~----~~~~~~~~-------------------~~~~~~~------~~--------- 201 (1146)
T PRK08633 165 -SVNG-NT---PSEILGRIAPAGLV----LLAVAVLG-------------------LIFAYRL------PK--------- 201 (1146)
T ss_pred -hhcc-cc---ccccccchHHHHHH----HHHHHHHH-------------------HHHHhcC------cC---------
Confidence 0000 00 00000011100000 00000000 0000000 10
Q ss_pred CccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecchh
Q 039263 285 PSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLG 364 (492)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~ 364 (492)
.++.... .++ .+ ...........+++.++++.+|.+.+..++.......+.....
T Consensus 202 -------~~~~~~~-~~~--------~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1146)
T PRK08633 202 -------VPAAAPE-VFD--------KK---------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFP 256 (1146)
T ss_pred -------CCCCCcc-ccc--------cc---------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0000000 000 00 0000000012456778899999877766554444333444444
Q ss_pred HHHh-hcCCCCC-ccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHH
Q 039263 365 QIGS-SLGYPAR-STTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASV 441 (492)
Q Consensus 365 ~I~~-slg~~~~-~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~ 441 (492)
.+.+ .+|.+.. ..+...++..++..+|.+++|.++||..+++ .+.+..++++++.+++.... ...+.+..+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG------LVPLGALGLALSLFLLPTAPSLASVLVLFF 330 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc------chhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4443 4677766 6677778888889999999999998875432 23333344444443333222 224456677
Q ss_pred HHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 442 IIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
+.|++.|.......+++.+.+..++-|+-+++..+
T Consensus 331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~ 365 (1146)
T PRK08633 331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF 365 (1146)
T ss_pred HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence 88999999999999999999988888887776543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=127.53 Aligned_cols=301 Identities=15% Similarity=0.099 Sum_probs=184.8
Q ss_pred HHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 039263 56 KTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGA 134 (492)
Q Consensus 56 ~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g 134 (492)
+.+++||++|-+++-.+...|... .+|+|.++||+|.|.++..++++..++-.++=++.+- ..|.+++.=++.|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-----~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-----GFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHhH
Confidence 568999999999998888899887 6788999999999999999999999888776433321 1233455567888
Q ss_pred ccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhhhccccccc
Q 039263 135 NSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVFLRTFRIIKI 213 (492)
Q Consensus 135 ~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~ 213 (492)
.+.+..+++.-.-..||.| ++|++..+++.++.-+|..+-.++....-+. .
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s----------------------~------ 191 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES----------------------S------ 191 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc----------------------C------
Confidence 8999998988888999998 6899999999988877766664433332211 0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCCCccccCCCC
Q 039263 214 VRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSH 293 (492)
Q Consensus 214 ~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (492)
.+-+..|+....+++ +..++. ..+ ..+++. ++
T Consensus 192 ---~GW~sifY~~g~~g~---i~~~~w--------------------------~~~---~~d~P~-------------~h 223 (466)
T KOG2532|consen 192 ---LGWPSIFYVFGIVGL---IWFILW--------------------------FLF---YSDSPS-------------KH 223 (466)
T ss_pred ---CCCchHHHHHHHHHH---HHHHHH--------------------------HHH---hcCCcc-------------cC
Confidence 122344442211110 100010 000 000000 00
Q ss_pred CccccccCCCCCCCCCCccccccccccc-cCCCCCCCcccHHHHhcchhHHHHHHHHHhhcc-ceeEEecchhHHHhhcC
Q 039263 294 PELKIVTELPPQQASPSTEAQVCCTENI-FMPPDRGEDYTILQALFSIDMLIIFIATTCGVG-GTLTAIDNLGQIGSSLG 371 (492)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g-~Gl~~i~n~~~I~~slg 371 (492)
+... ++|.+..+++. ++..+++++..++++++++.+|.+|+..++..- .-++.++--..+-+-++
T Consensus 224 ~~is-------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~ 290 (466)
T KOG2532|consen 224 PNIS-------------EKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG 290 (466)
T ss_pred CCCC-------------HHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Confidence 0000 00000000000 001111146789999999999999998777433 32222333333334488
Q ss_pred CCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCC----chHHHHHHHHHHHHHHHHHHhcC--Cc-----hhHHHH
Q 039263 372 YPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIP----RPLLFTFVLLFSCVGHPFIAYGI--PN-----SLYAAS 440 (492)
Q Consensus 372 ~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~----R~~~l~i~~~l~~~~~ll~~~~~--~~-----~l~~~~ 440 (492)
++-++.+.+.++=-+.+..-+++.|.++||+.+| .+. |..+-.+++....+.++.+.+.. .. .+-++.
T Consensus 291 f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~ 369 (466)
T KOG2532|consen 291 FDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAI 369 (466)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHH
Confidence 8889999999999999999999999999999886 443 34444555665555554443322 11 122333
Q ss_pred HHHHhhhcchh
Q 039263 441 VIIGFCFGAQW 451 (492)
Q Consensus 441 ~liG~~~G~~~ 451 (492)
.+.|++.+|..
T Consensus 370 ~~~g~~~~Gf~ 380 (466)
T KOG2532|consen 370 GLSGFNISGFY 380 (466)
T ss_pred HHcccchhhhH
Confidence 44466666654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=118.43 Aligned_cols=135 Identities=11% Similarity=0.044 Sum_probs=79.3
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecc-hhHHHhhc----CCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhc
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDN-LGQIGSSL----GYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKY 406 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n-~~~I~~sl----g~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~ 406 (492)
+.+|.+|++++|.+.+..++.. .......+ .....+.. +.+....+...++..+.+..+++..|.+.||+++|+
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~ 285 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVA-CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN 285 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 5689999999987655443322 11111111 12222221 222233455667778889999999999999996542
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 407 KIPRPLLFTFVLLFSCVGHPFIAYG-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 407 ~~~R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
.+.+..++..+...+.... ....+++...+.|++++......-..+.|.++.|+-++.++.
T Consensus 286 ------~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~ 347 (396)
T TIGR00882 286 ------ALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLI 347 (396)
T ss_pred ------hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehH
Confidence 3444455555544443332 233455666667888776666666677888887776664443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=134.68 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=94.3
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCc
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPR 410 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R 410 (492)
.+++..+++.+|.+.+.+++....+.++......+.+. +|.++...+...+.++++..+|.+..|.++|+..+++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~- 295 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP- 295 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh-
Confidence 46778899999998887666554443344445555554 6877777888889999999999999999988654432111
Q ss_pred hHHHHHHHHHHHHHHHHHHh---------------------cCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccc
Q 039263 411 PLLFTFVLLFSCVGHPFIAY---------------------GIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYST 469 (492)
Q Consensus 411 ~~~l~i~~~l~~~~~ll~~~---------------------~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~ 469 (492)
+..+++.+..+.+.. .....+.+..+++|++.|......++++.+....++.|+
T Consensus 296 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 296 -----IGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred -----HHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccccee
Confidence 111111111111111 112234566778899999999999999999999999999
Q ss_pred cccccee
Q 039263 470 LYNFGAV 476 (492)
Q Consensus 470 nyg~~~l 476 (492)
.+|+..+
T Consensus 371 v~g~~~~ 377 (1140)
T PRK06814 371 VIAANNV 377 (1140)
T ss_pred eeHHHHH
Confidence 8887543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=113.79 Aligned_cols=134 Identities=9% Similarity=-0.083 Sum_probs=90.7
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCch
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRP 411 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~ 411 (492)
+.++.+|+++||.+.+..++..+.-..+.....+..++.|.++...+...++..+....+++.+|.+.||+++ .
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~------~ 270 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSA------R 270 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCH------H
Confidence 4678999999999888766655544445556666667788877777766666666666666666666665533 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccc
Q 039263 412 LLFTFVLLFSCVGHPFIAYGIP-NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYN 472 (492)
Q Consensus 412 ~~l~i~~~l~~~~~ll~~~~~~-~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg 472 (492)
..+.+..+...+...+....+. ..+++...+-|+++|..+......+.+. -.++.++-.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~ 331 (382)
T TIGR00902 271 DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQA 331 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHH
Confidence 3455666666666555443333 3456677788999999999999999987 5556554333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=111.73 Aligned_cols=136 Identities=10% Similarity=-0.075 Sum_probs=81.2
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCch
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRP 411 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~ 411 (492)
++++.+|++.||.+.+..++....-..+.+......++.|+++.+.+...++..+.+..+++..|.+.||.+ +.
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~------~~ 270 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWS------AR 270 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HH
Confidence 568999999999876654443322112233344455667877666666666666666667776666666653 33
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 412 LLFTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 412 ~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
..+.+..+.+.+..++....+ ...+++..++.|+++|......-..+.+.- ..|.++.++..
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 333 (382)
T PRK11128 271 DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALY 333 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHH
Confidence 345555566666554443333 234566677778888887666656555553 34445545543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-09 Score=109.66 Aligned_cols=99 Identities=10% Similarity=0.118 Sum_probs=62.7
Q ss_pred hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHhh
Q 039263 368 SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAY-GIPNSLYAASVIIGFC 446 (492)
Q Consensus 368 ~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~-~~~~~l~~~~~liG~~ 446 (492)
+.+++++.+.+...++..+....|++++|.++||+++|+ .+........+....... .....+.+...+.+++
T Consensus 245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 318 (393)
T PRK15011 245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF------LMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIY 318 (393)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 457787777777777777888889999999999997653 122222222222212211 2222334445566778
Q ss_pred hcchhhhHHHHHHHhhcCCCccccccc
Q 039263 447 FGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 447 ~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
+|...+..+....|.+. ++-|+..++
T Consensus 319 ~g~~~~~~~~~~~~~~p-~~~g~~~~~ 344 (393)
T PRK15011 319 IGILGGIGMLYFQDLMP-GQAGSATTL 344 (393)
T ss_pred HHHHHHHHHHHHHHhCC-CCcchHHHH
Confidence 88888888888999996 556765544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=113.93 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=83.2
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHH-hh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCC
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIG-SS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIP 409 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~-~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~ 409 (492)
.+++.+++++||.+.+..++.... ....+...... +. ++ ++...+...++..+...++.+++|.++||+++|+
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~--- 288 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNLA-FNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI--- 288 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH-HHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH---
Confidence 456788999999887655543222 11111111111 11 22 2233344556678889999999999999996542
Q ss_pred chHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHhhhcchhhhHHHHHHHh-------hcCCCcccccccc
Q 039263 410 RPLLFTFVLLFSCVGHPFIAYGI--PNSLYAASVIIGFCFGAQWPLLFAIISEI-------FGLKYYSTLYNFG 474 (492)
Q Consensus 410 R~~~l~i~~~l~~~~~ll~~~~~--~~~l~~~~~liG~~~G~~~~~~P~i~se~-------FG~k~~g~nyg~~ 474 (492)
.+.+..++..++.+.+.... ...+.+..++.|+++|.......++.+|. .|.++-|.-+++.
T Consensus 289 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 359 (437)
T TIGR00792 289 ---LFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR 359 (437)
T ss_pred ---HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence 33444445555554433322 12345566777999999999999999887 4667777777664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=104.96 Aligned_cols=328 Identities=15% Similarity=0.147 Sum_probs=204.0
Q ss_pred ccccHHHHHhhCCChhhhhHHHHHhhhhcc--ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 039263 49 GLYSSDIKTSLGYDQSTLNLLSFSKDVGGN--VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQM 126 (492)
Q Consensus 49 S~ys~~L~~~~~~sq~~l~~is~~~~vg~~--~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l 126 (492)
.+--|++|+.+++|+.|.+++..+.. ++| .++|+|++.+|+|.|..+++|..++.+|..++|-+-..+ .+-..
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff-~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~----~y~~F 107 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFF-GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK----SYGFF 107 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHH-HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh----hHHHH
Confidence 45679999999999999999866544 444 389999999999999999999999999999888442222 12223
Q ss_pred HHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhh
Q 039263 127 CLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVFL 205 (492)
Q Consensus 127 ~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~~ 205 (492)
+.-.++-+.|.+.-.|++-.-.....|++ .-.=..+..+|+|||+.+--.+.+.+...+..
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~------------------ 169 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA------------------ 169 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh------------------
Confidence 33345678899999999999999999874 33334577899999999886666554432100
Q ss_pred hcccccccccc--chhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCC
Q 039263 206 RTFRIIKIVRQ--ANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSK 283 (492)
Q Consensus 206 ~~i~~~~~~~~--~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~ 283 (492)
... -++..+ ......+..+-++.++ .++++. .. .....
T Consensus 170 ~~~--~~~~~~~~~~~~~~~v~~pYl~~~--~~lvll-------------------------~v----~~~~~------- 209 (422)
T COG0738 170 LTM--SAAQILAIKGADASSVQFPYLILA--GLLVLL-------------------------AV----LILLS------- 209 (422)
T ss_pred hcc--CHHHHHHHHHHHHHhhhhHHHHHH--HHHHHH-------------------------HH----HHHhc-------
Confidence 000 000000 0000000111111110 000000 00 00000
Q ss_pred CCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecch
Q 039263 284 KPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNL 363 (492)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~ 363 (492)
+.|+.++ . + + +..++.|.+..++.+++++|.--+..|+=+|...++=+-+
T Consensus 210 --------k~p~~~~-~-------~---~-----------~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl 259 (422)
T COG0738 210 --------KLPDLQV-A-------A---P-----------SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFL 259 (422)
T ss_pred --------cCCcCCc-c-------c---c-----------cccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0010000 0 0 0 0001112367899999999999999999899887777777
Q ss_pred hHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH-HHHHHHHHHHHHHhcCCchhHHHHH
Q 039263 364 GQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF-VLLFSCVGHPFIAYGIPNSLYAASV 441 (492)
Q Consensus 364 ~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i-~~~l~~~~~ll~~~~~~~~l~~~~~ 441 (492)
-++.++ .|.++.+++..++.+=.+-..||++.-.+-.|+ +..|...+.. ..++.++. ........-..+..
T Consensus 260 ~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~----~~~k~Laf~a~~~ill~~~---~~l~~g~v~~~~l~ 332 (422)
T COG0738 260 VSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI----KPEKYLAFYALIAILLLLA---VALIGGVVALYALF 332 (422)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHH---HHHhcChHHHHHHH
Confidence 777777 677878888899999999999995544443444 3334333321 12222221 22233344456777
Q ss_pred HHHhhhcchhhhHHHHHHHhhcCCCcccccccceeh
Q 039263 442 IIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA 477 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la 477 (492)
++|+..+.+|.+.=++..+..| +|-+.-=+++.++
T Consensus 333 ~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~ma 367 (422)
T COG0738 333 LIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMA 367 (422)
T ss_pred HHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeh
Confidence 8899999999999999999999 7777665665554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-09 Score=114.83 Aligned_cols=118 Identities=11% Similarity=-0.054 Sum_probs=77.0
Q ss_pred cHHHHHhhCCChhhhhHHHHHhhhhccccccceeeeccC-----CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 039263 52 SSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEIT-----PPWVV-LAIGSIMNFFGYFMIWLAVTGRIPKPQVWQ 125 (492)
Q Consensus 52 s~~L~~~~~~sq~~l~~is~~~~vg~~~~~~~G~~~D~~-----Gpr~~-~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~ 125 (492)
-|...++.|.|.+|++.++.....- .+.++.|.+.||+ |+|.. +.++.+...++..++. +... ..++|.
T Consensus 35 l~~~l~~~g~~~~~ig~~~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a--~~~~--~~~l~~ 109 (491)
T PRK11010 35 LQAWMTVENIDLKTIGFFSLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG--FLEP--GTQLRW 109 (491)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH--HcCC--cchHHH
Confidence 3444455688888888863322221 3578999999999 88875 4556655555544332 2221 123555
Q ss_pred HHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHH
Q 039263 126 MCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 126 l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~ 174 (492)
+....++.+.+.+..+.+.-....+||| ++||++.|+....+.+|..+-
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 5555556676677777887788889998 789999999887776654444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=110.78 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHH
Q 039263 28 RWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFG 106 (492)
Q Consensus 28 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~G 106 (492)
.+..+..+.++.......+.+. .+++.+++|.++.+++++..+..+.. .+++++|.+.||+|+|.+++++.++..++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFA--AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHH
Confidence 3444555555544444444333 34667888889888888755555554 45899999999999999999998888777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhh
Q 039263 107 YFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVG 168 (492)
Q Consensus 107 y~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~G 168 (492)
....... .+ . ...-++.|.+.++.+.+......+++| ++|+++.|+......
T Consensus 82 ~~~~~~~-----~~--~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~ 134 (393)
T PRK11195 82 CLLMLFG-----IH--P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTI 134 (393)
T ss_pred HHHHHHH-----HH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 5443221 11 1 122346788889999999999999998 579999998765543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=112.00 Aligned_cols=116 Identities=9% Similarity=-0.044 Sum_probs=79.0
Q ss_pred HHHHHhhCCChhhhhHHHHHhhhhccccccceeeeccC-----CcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 039263 53 SDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEIT-----PPWV-VLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQM 126 (492)
Q Consensus 53 ~~L~~~~~~sq~~l~~is~~~~vg~~~~~~~G~~~D~~-----Gpr~-~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l 126 (492)
.-|++ .|+|.+|++++...... -.+.++.|.+.||+ |+|. .+.++.+...+....+. +... ..++|.+
T Consensus 24 ~~l~~-~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~--~~~~--~~~~~~l 97 (402)
T PRK11902 24 AWMTV-EGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA--FCPP--HAALWPL 97 (402)
T ss_pred HHHHH-cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH--hcCc--cchHHHH
Confidence 33554 59999999998555444 35689999999999 6654 56666666655654433 2221 1235666
Q ss_pred HHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeehhHhhhhhHHHH
Q 039263 127 CLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 127 ~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~~a~~GLsa~i~ 174 (492)
..+.++.+......+.+.-....+++|+| ||++.++...+++++..+-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g 146 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVS 146 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHH
Confidence 55555556666677777777788999865 9999999887776664444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.1e-09 Score=107.59 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=102.8
Q ss_pred cccccchHHHHHHHHHHHHhhCcc-cccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHH
Q 039263 22 VGVLTGRWFMVFASLLIMAVAGAT-YMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIG 99 (492)
Q Consensus 22 ~~~~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG 99 (492)
.++..+||+.|++..+.+++.|-. =.|+..++...+-|+ +.....+. .+...+.--+++++=++.||+|-|.+.++|
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 378899999999999999999885 678888888999999 44444444 344445555789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHH-HH-HHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehh
Q 039263 100 SIMNFFGYFMIWLAVTGRIPKPQVWQ-MC-LYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLK 164 (492)
Q Consensus 100 ~vl~~~Gy~~~~~~~~g~i~~~~~~~-l~-~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~ 164 (492)
+++.++|..+=..+..-.+++ ..|. ++ .=..+++...-++..-+-+-+.-||| |+|-.|..+-+
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~-~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v 182 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPP-LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGV 182 (480)
T ss_pred HHHHHHHHHHhhhccCccccc-cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHH
Confidence 999999975434333333332 2342 22 22456777777777766688999996 67887776543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=106.98 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=83.8
Q ss_pred ccccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
...+.---|++.+++|.++.+.++. +..........++.|.+.||+|+|.++++|.++..++..+... .+ +.
T Consensus 32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~--~~ 104 (413)
T PRK15403 32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----TT--SM 104 (413)
T ss_pred HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----cC--CH
Confidence 3444444457888999999998885 4443333345889999999999999999898877777543332 12 24
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i 173 (492)
+.+...-++.|.+.++..........++||+ +|+++.++......++..+
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII 155 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5565556666777666555556666788986 5788888776666665443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-09 Score=121.71 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=97.0
Q ss_pred ccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHH--hcCC-----
Q 039263 47 MFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAV--TGRI----- 118 (492)
Q Consensus 47 ~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~--~g~i----- 118 (492)
..+.--++++++++++.+|.+++..+.+++..+ .++.|++.||+|+|..+.+|.++.++|-+++.+.- .+..
T Consensus 51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 445556899999999999999998888888865 79999999999999999999999999987765431 0000
Q ss_pred -----------------------------------C--CchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCcee
Q 039263 119 -----------------------------------P--KPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVL 160 (492)
Q Consensus 119 -----------------------------------~--~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~ 160 (492)
. +..++.+.+.-++.|.|.+..++.......+|+|. +|++..
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 0 11223344567889999999999999999999985 689999
Q ss_pred eehhHhhhhhHH
Q 039263 161 GLLKGFVGLSGA 172 (492)
Q Consensus 161 Gi~~a~~GLsa~ 172 (492)
|+..+...+|..
T Consensus 211 ~i~~~~~~iG~~ 222 (633)
T TIGR00805 211 GILESIAVFGPA 222 (633)
T ss_pred HHHHHHHHhhhH
Confidence 987766665543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=105.67 Aligned_cols=318 Identities=15% Similarity=0.160 Sum_probs=175.8
Q ss_pred cHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeec----cCCcHHH-HHHHHHHHHHHHHHHHHH-HhcCCC-Cchh
Q 039263 52 SSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINE----ITPPWVV-LAIGSIMNFFGYFMIWLA-VTGRIP-KPQV 123 (492)
Q Consensus 52 s~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D----~~Gpr~~-~~iG~vl~~~Gy~~~~~~-~~g~i~-~~~~ 123 (492)
.+-+.+.+|++...++++ .+.-......-++.|.+.| |+|+|.. +++|+++..+++.+++.. -.+.-. ..-.
T Consensus 25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 444567789999998887 5555555567899999999 7886654 468999999998887754 111111 1113
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcC--CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFP--ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAIS 201 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP--~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~ 201 (492)
|....+.+. ..+-.+.+..-.......-| |+|...++.-..+..+|+.+.+.+...
T Consensus 105 ~~~~~~~l~-~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~--------------------- 162 (428)
T PF13347_consen 105 WLFVFYILF-DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI--------------------- 162 (428)
T ss_pred HHHHHHHHH-HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh---------------------
Confidence 433333333 55555554433333334444 578888888666555555443332211
Q ss_pred HhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhcc
Q 039263 202 FVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRK 281 (492)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~ 281 (492)
++..... ++..+.++....+ .++..++...+. ....||+
T Consensus 163 -----l~~~~g~---~~~~~~~~~~~~v---~~iv~~v~~~i~-------------------------~~~~ke~----- 201 (428)
T PF13347_consen 163 -----LVSWFGG---GDTSNGYRWMALV---LAIVGLVFFLIT-------------------------FFFVKER----- 201 (428)
T ss_pred -----hhhhhcc---CccchHHHHHHHH---HHHHHHHHhhhh-------------------------hheeeec-----
Confidence 1111110 1111233311111 111111110000 0000110
Q ss_pred CCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEec
Q 039263 282 SKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAID 361 (492)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~ 361 (492)
++++ + + ++++.+.-..+++..++++|+.++...++....-.+...
T Consensus 202 ----------~~~~----~---------~------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~ 246 (428)
T PF13347_consen 202 ----------SVEV----T---------E------------QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNT 246 (428)
T ss_pred ----------cccc----c---------c------------cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhh
Confidence 0000 0 0 000000112457889999999988888775333322232
Q ss_pred chhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHH-h--cCCchhH
Q 039263 362 NLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIA-Y--GIPNSLY 437 (492)
Q Consensus 362 n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~-~--~~~~~l~ 437 (492)
..-...+. ++.+ ...+....+..+...++-++++.++||++||+ .+.+..++.+++.+.+. . .....++
T Consensus 247 ~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T PF13347_consen 247 FLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK------VYIIGLLLAALGFLLLFFLGPGSPWLVL 319 (428)
T ss_pred HHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee------ehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33334443 3433 44556667888999999999999999997754 33344444444444322 2 2455678
Q ss_pred HHHHHHHhhhcchhhhHHHHHHHhh-------cCCCcccccccc
Q 039263 438 AASVIIGFCFGAQWPLLFAIISEIF-------GLKYYSTLYNFG 474 (492)
Q Consensus 438 ~~~~liG~~~G~~~~~~P~i~se~F-------G~k~~g~nyg~~ 474 (492)
+..++.|+++|..+.+.+++.+|.- |.|+-|..++..
T Consensus 320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~ 363 (428)
T PF13347_consen 320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN 363 (428)
T ss_pred HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence 8888999999999999999999876 456667777664
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-07 Score=99.43 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=82.6
Q ss_pred cccccc-ccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeecc-CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 039263 45 TYMFGL-YSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEI-TPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKP 121 (492)
Q Consensus 45 ~Y~fS~-ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~-~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~ 121 (492)
.|.+.. ....+++++|+|+++...+........+ ..+++|++.|| +|+|.++.+|.++..+|+.++... . +
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~--~---~- 110 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS--G---H- 110 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--c---c-
Confidence 344444 4556678999999987775333333333 35689999999 599999999999999998665532 1 1
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCCC---CCceeeehhHhhhhhHHHHHHHH
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPES---RGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~---RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
..+.+.....+.|.|.+...........++||++ |+.+.++.-.+..+|+.+-..+.
T Consensus 111 ~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 111 DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 1233333334556777776666667788999864 33456655566666665443333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.4e-07 Score=92.48 Aligned_cols=337 Identities=16% Similarity=0.138 Sum_probs=206.4
Q ss_pred chHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
+.|..+.+=.+..++.|+ -+.-.--=||+.+.+|.|.++.... +.........+++-..+.||+.+|.+++...+++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 444444444555666777 5888888899999999999999885 55555555568999999999999999887777777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
+|-.+..++ ++++.+.+-=++.|...|.+...+...+.|-=| +|||.+.|++.++.-++- +.
T Consensus 90 ~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~-v~--------- 152 (394)
T COG2814 90 VSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT-VL--------- 152 (394)
T ss_pred HHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH-HH---------
Confidence 776543322 346766666677788888888888888888886 589999999877764421 11
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHH
Q 039263 184 DNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLI 263 (492)
Q Consensus 184 ~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (492)
..++=..++-.+ +-..+|. .++ .++ ++.. ..+
T Consensus 153 ------------GvPLGt~ig~~~----------GWR~~F~---~ia-~l~---ll~~-------------------~~~ 184 (394)
T COG2814 153 ------------GVPLGTFLGQLF----------GWRATFL---AIA-VLA---LLAL-------------------LLL 184 (394)
T ss_pred ------------hccHHHHHHHHh----------hHHHHHH---HHH-HHH---HHHH-------------------HHH
Confidence 111111111000 1112222 110 000 0000 000
Q ss_pred HHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHH
Q 039263 264 LLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDML 343 (492)
Q Consensus 264 ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FW 343 (492)
....| |. ++++ +...+-.+..+.+|+|+-|
T Consensus 185 ~~~lP-----~~----------------~~~~-----------------------------~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 185 WKLLP-----PS----------------EISG-----------------------------SLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHhCC-----Cc----------------cCCC-----------------------------CCCcchhHHHHHhcCchHH
Confidence 01111 00 0000 0001112457899999999
Q ss_pred HHHHHHHhhccceeEEecchhHHHhhc-CCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHH
Q 039263 344 IIFIATTCGVGGTLTAIDNLGQIGSSL-GYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSC 422 (492)
Q Consensus 344 llf~~~~~~~g~Gl~~i~n~~~I~~sl-g~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~ 422 (492)
..+++.++..+..-+.-.=++++-++. |.+....+...-++.++..+|-+..|.++|| .. |. .+.....++.
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~-----~~-~l~~~~~l~a 287 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GP-----RR-ALIAALLLLA 287 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cc-----hh-HHHHHHHHHH
Confidence 999999999988888777888888875 6677777888899999999999999999998 32 22 2333344444
Q ss_pred HHHHHHHh-cCCch-hHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcc----cccccceehhhHHHHHHh
Q 039263 423 VGHPFIAY-GIPNS-LYAASVIIGFCFGAQWPLLFAIISEIFGLKYYS----TLYNFGAVASPVGAYILN 486 (492)
Q Consensus 423 ~~~ll~~~-~~~~~-l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g----~nyg~~~la~~~gs~l~~ 486 (492)
+..+.+.+ ..... ......+.|+..+...-....-.++ .-+++-. .|-..+.++..+|+.+-.
T Consensus 288 ~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG 356 (394)
T COG2814 288 LALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGG 356 (394)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443322 22222 2333334566666666666666666 4344433 333444555555554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-07 Score=97.87 Aligned_cols=333 Identities=17% Similarity=0.157 Sum_probs=184.9
Q ss_pred cHHHHHhhC--CChhhhhHH-H---HHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 039263 52 SSDIKTSLG--YDQSTLNLL-S---FSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVW 124 (492)
Q Consensus 52 s~~L~~~~~--~sq~~l~~i-s---~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~ 124 (492)
.+.+.++|| .+.++++++ + .+..+|+.+ .+.+|.+.||+|+|..+.+..++..++-.++..+.. .++ ..
T Consensus 42 n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~--~~~--~e 117 (485)
T KOG0569|consen 42 NETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS--APS--FE 117 (485)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hhh--HH
Confidence 355566888 444445554 3 334455555 578899999999999999888888888766654432 222 23
Q ss_pred HHHHHH-HHhhccccchhhhhhhhhhhhcCCC-CCceeeehhHhhhhhHHHHHHHHHH-HcCCChh-HHHHHHHHHHHHH
Q 039263 125 QMCLYI-CIGANSQSFANTGALVTCVKNFPES-RGSVLGLLKGFVGLSGAILTQLYHA-FYGDNSK-ALILLIAWLPAAI 200 (492)
Q Consensus 125 ~l~~~~-~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~~a~~GLsa~i~s~i~~~-~f~~~~~-~fllfla~~~~~v 200 (492)
+..++ ++.|..++......-+--..-=|++ ||.+.-...-++.+|-.+-..+..- +++++.. -|+++....|.++
T Consensus 118 -~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~ 196 (485)
T KOG0569|consen 118 -MLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL 196 (485)
T ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH
Confidence 33343 5677777777777777777888975 9988877666655554444333333 3433222 4777777777777
Q ss_pred HHhhhhccccccc---cccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhh
Q 039263 201 SFVFLRTFRIIKI---VRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEI 277 (492)
Q Consensus 201 ~~~~~~~i~~~~~---~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~ 277 (492)
.++..++...-|. .++++++++-+ ..
T Consensus 197 ~l~~l~~~PESPk~Ll~~k~~~~~A~~---------------------------------------------------sl 225 (485)
T KOG0569|consen 197 QLALLPFLPESPKYLLIKKGDEEEARK---------------------------------------------------AL 225 (485)
T ss_pred HHHHHhcCCCCcchHHHHcCCHHHHHH---------------------------------------------------HH
Confidence 6666555432221 00000011100 00
Q ss_pred hhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcch----hHHHHHHHHHhhc
Q 039263 278 SLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSI----DMLIIFIATTCGV 353 (492)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~----~FWllf~~~~~~~ 353 (492)
+- ++++++++++. +++....++ ++.+++++.+++|+++++ ..++...+.++..
T Consensus 226 ~~-------y~G~~~~~~~~--------------e~~~~e~~~--~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq 282 (485)
T KOG0569|consen 226 KF-------YRGKEDVEAEI--------------EEMLREIEE--EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQ 282 (485)
T ss_pred HH-------HhCCCcchhHH--------------HHHHHHHHH--hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 00 00000000000 000000000 001112356888888864 3556666777777
Q ss_pred cceeEEec-chhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHH---
Q 039263 354 GGTLTAID-NLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIA--- 429 (492)
Q Consensus 354 g~Gl~~i~-n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~--- 429 (492)
.+|...++ ..-.|-++.|.+..++...-...++.|....+++.++-||++|| ..+.+...++.+..+++.
T Consensus 283 ~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR------pLll~~~~~~~~~~~~~~~~~ 356 (485)
T KOG0569|consen 283 FSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR------PLLLISLSLMAVALLLMSIAL 356 (485)
T ss_pred hcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 77777666 46677778898877777777888999999999999999999643 344444444444333221
Q ss_pred --hcCC-chh-H---HHHHHHHhhhcchhh-hHHHHHHHhhcCCCccc
Q 039263 430 --YGIP-NSL-Y---AASVIIGFCFGAQWP-LLFAIISEIFGLKYYST 469 (492)
Q Consensus 430 --~~~~-~~l-~---~~~~liG~~~G~~~~-~~P~i~se~FG~k~~g~ 469 (492)
.... ... | .+..+..+.|+.-.+ +-.-+++|+|..++=++
T Consensus 357 ~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~a 404 (485)
T KOG0569|consen 357 FLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSA 404 (485)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHH
Confidence 1111 111 1 222233444444322 33357899998765443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=98.73 Aligned_cols=127 Identities=14% Similarity=0.036 Sum_probs=95.6
Q ss_pred hCcccccccccHHHHHhhCCChhh-hhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039263 42 AGATYMFGLYSSDIKTSLGYDQST-LNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIP 119 (492)
Q Consensus 42 ~Gt~Y~fS~ys~~L~~~~~~sq~~-l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~ 119 (492)
.-.--..|+-.|+|++.+|+|++| .+.+..+...+= ..-+++|++.||+|+|+++.++.+...+-+.++..+ .
T Consensus 39 ~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----~ 113 (511)
T TIGR00806 39 AQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----T 113 (511)
T ss_pred HHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----H
Confidence 333456777889999999999999 777744444333 358999999999999999999988777666554432 2
Q ss_pred CchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHH
Q 039263 120 KPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQ 176 (492)
Q Consensus 120 ~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~ 176 (492)
+++.+.+.=++-|.+.+... +......+|||. +||+++|+..+..-+|.++-..
T Consensus 114 --Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 114 --SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24556556666677788877 999999999985 7999999988777676666544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=100.23 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=76.7
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCcc-chhhhHHHhhhhhhhcccchhhHHHhhhcCCCc
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARST-TTFVSLVSIWNYLGRVVAGFASEILLKKYKIPR 410 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~-~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R 410 (492)
..++.+|++.||.+.+..++.... ....+..............+. +.......+...+|.++++.++||++||+
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~---- 295 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTA-VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR---- 295 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHH-HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH----
Confidence 457889999999987665443211 111122222111111111222 22223445667788899999999987653
Q ss_pred hHHHHHHHHHHHH-HHHHHHhcC--CchhHHHHHHHHhhhcchhhhHHHHHHHhh-------cCCCcccccccc
Q 039263 411 PLLFTFVLLFSCV-GHPFIAYGI--PNSLYAASVIIGFCFGAQWPLLFAIISEIF-------GLKYYSTLYNFG 474 (492)
Q Consensus 411 ~~~l~i~~~l~~~-~~ll~~~~~--~~~l~~~~~liG~~~G~~~~~~P~i~se~F-------G~k~~g~nyg~~ 474 (492)
.+.+..+...+ ...++.... ...+++..++.|+++|....+..++++|.. |.|.-|..++..
T Consensus 296 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~ 367 (444)
T PRK09669 296 --AFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTN 367 (444)
T ss_pred --HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHH
Confidence 22222222222 221222211 223566777889999999999999999987 666666666663
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-06 Score=92.12 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=88.6
Q ss_pred cccccHHHHHh--hCCChhhhhHHHHHhhhhc-cccccceeeecc-CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 48 FGLYSSDIKTS--LGYDQSTLNLLSFSKDVGG-NVGVLSGLINEI-TPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 48 fS~ys~~L~~~--~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~-~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
++.....++++ +|+++.|.+.+......+. ...+++|++.|| +|+|.++.+|.++..+|+.++... ++ .
T Consensus 30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----~~--~ 102 (475)
T TIGR00924 30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----IY--P 102 (475)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----cc--H
Confidence 44455566777 9999999998744444444 458899999999 799999999999999998765532 22 3
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC----CCCceeeehhHhhhhhHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE----SRGSVLGLLKGFVGLSGAILTQLYHA 180 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~----~RG~a~Gi~~a~~GLsa~i~s~i~~~ 180 (492)
+.+.....+.|.|.+....+.-....++||+ +|+.+.++.-....+|+++=..+...
T Consensus 103 ~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 103 DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 3344344456778787777777778899985 38888888666666665544444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-06 Score=92.00 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhCc-cccc-ccccHHHHHhhCCChhhhhHHHHHhh-hhccccccceeeecc-CCcHHHHHHHHHHHH
Q 039263 29 WFMVFASLLIMAVAGA-TYMF-GLYSSDIKTSLGYDQSTLNLLSFSKD-VGGNVGVLSGLINEI-TPPWVVLAIGSIMNF 104 (492)
Q Consensus 29 w~~l~a~~~i~l~~Gt-~Y~f-S~ys~~L~~~~~~sq~~l~~is~~~~-vg~~~~~~~G~~~D~-~Gpr~~~~iG~vl~~ 104 (492)
|..+.....+..+-.. -|.+ +.....+++.+|+++++.+++..... +.....+++|++.|| +|+|.+.++|.++..
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 3334444444444333 3433 45566778899999999888643333 444457899999999 999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCC---CCceeeehhHhhhhhHHH
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPES---RGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~---RG~a~Gi~~a~~GLsa~i 173 (492)
+|+....+. . +.+ ..+.....+.+.|.+...........++||++ |+.+-++.-....+|+++
T Consensus 93 ~g~~~~~~~--~---~~~-~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~ 158 (489)
T PRK10207 93 IGYFMTGMS--L---LKP-DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI 158 (489)
T ss_pred HHHHHHHHh--c---cch-hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence 998766533 1 111 22333445567888888877778888999854 366666666666666553
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=100.18 Aligned_cols=327 Identities=18% Similarity=0.091 Sum_probs=173.6
Q ss_pred HHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHH-HHHhcCCCCchhHHHHHHHHH
Q 039263 55 IKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIW-LAVTGRIPKPQVWQMCLYICI 132 (492)
Q Consensus 55 L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~-~~~~g~i~~~~~~~l~~~~~l 132 (492)
+++..+....|++.+.+...++=. ..+|+|.+.||+++...+..-++ .+.++. +... .. +++.++..-++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~----~w~~~~~~~~~--~~--s~~~~ialr~l 143 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGI----LWGLFGFLTAA--VH--SFPGLIALRFL 143 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHH----HHHHHHHHHHH--Hh--hhHHHHHHHHH
Confidence 678888899999998666666554 47899999999995554432222 222221 1111 22 24556555455
Q ss_pred hhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhhhccccc
Q 039263 133 GANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISFVFLRTFRII 211 (492)
Q Consensus 133 ~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~~~~~~i~~~ 211 (492)
.|.-.+....+.....-+||. ++||+..|+..+.-++|+.+=+.|..++++=|.. ..
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~--------------------~~-- 201 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS--------------------GG-- 201 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC--------------------CC--
Confidence 555556666788888889995 6899999999998888888877777776541000 00
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCCCccccCC
Q 039263 212 KIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDAN 291 (492)
Q Consensus 212 ~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~ 291 (492)
..+-+..|. + -+ +..++..+ +..+.+| ++++.-. -.+++
T Consensus 202 ----~~gW~~~Fi----I-~G--~i~~~~gi-------------------~~f~~lp------~~P~~~~----fl~~~- 240 (495)
T KOG2533|consen 202 ----LAGWRWLFI----I-EG--VITLVLGI-------------------VVFFFLP------DNPSKAW----FLTDE- 240 (495)
T ss_pred ----cCCceeehh----H-HH--HHHHHHHh-------------------eEEEEec------CChhhcc----ccchH-
Confidence 001111121 1 00 00000000 0001111 0000000 00000
Q ss_pred CCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhh-c
Q 039263 292 SHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSS-L 370 (492)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~s-l 370 (492)
|++ ...++.+ +++. +...++ .+-..++|.+++|..|.+.+..+|....--.+.+-+-.+-++ .
T Consensus 241 ek~-~~~~~~~----~~~~--------~~~~~~---~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~ 304 (495)
T KOG2533|consen 241 EKE-LVVERLR----ESPS--------GGIENK---FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG 304 (495)
T ss_pred HHH-HHHHHHH----hccC--------CCcccc---cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCC
Confidence 000 0000000 0000 000011 124578899999999999999999766544444445555666 4
Q ss_pred CCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcc
Q 039263 371 GYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGA 449 (492)
Q Consensus 371 g~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~ 449 (492)
|++..++..+-..+.+...+|=++.|++|||+..-. ..|..+.+...+...+++..+.... .... ..++-+|.
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-----~~~~~~~~ 378 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCLYAIIGAISLLAAAVLPGA-----YGAFLIGP 378 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHhhccchHH-----hHHHHhcc
Confidence 577777888889999999999999999999964100 0233444555566666643332211 1111 11122333
Q ss_pred hhhhHHHHHHHhhcCCCcccccccc
Q 039263 450 QWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 450 ~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
.....+..+.+.+=.++..-|++-+
T Consensus 379 ~~~~~~~~~~~~w~s~~~~g~~k~~ 403 (495)
T KOG2533|consen 379 YGLIATAIIALSWTSANLAGNTKAL 403 (495)
T ss_pred hhhHHHHHHHHhhccccccchHHhH
Confidence 3333445555555555555555543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=90.07 Aligned_cols=137 Identities=7% Similarity=-0.081 Sum_probs=83.6
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHH-hhhhhhhcccchhhHHHhhhcCCCc
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVS-IWNYLGRVVAGFASEILLKKYKIPR 410 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~S-i~N~~GRl~~G~lSD~~~~~~~~~R 410 (492)
+.++.+|++.+|.+....++...+-..+..-.....++.|++.++.+...++.. +....|++..|.+.||+++|+
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~---- 275 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR---- 275 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH----
Confidence 467899999998777655554332222222344556678888777777777665 467789999999999997653
Q ss_pred hHHHHHHHHHHHHHH-HHHHhc-----CCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcC-CCcccccccc
Q 039263 411 PLLFTFVLLFSCVGH-PFIAYG-----IPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGL-KYYSTLYNFG 474 (492)
Q Consensus 411 ~~~l~i~~~l~~~~~-ll~~~~-----~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~-k~~g~nyg~~ 474 (492)
.+.+..++..+.. ..+... ... .++....+.+++.|..+..+.+.+.+..+. ++.|+.+++.
T Consensus 276 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 345 (390)
T TIGR02718 276 --TFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAV 345 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 2222222221111 111111 111 123333444677888888888888888886 7778877764
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-07 Score=94.33 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=79.5
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHhh-cCCCCCccchhhhH-HHhhhhhhhcccchhhHHHhhhcCCC
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSL-VSIWNYLGRVVAGFASEILLKKYKIP 409 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl-~Si~N~~GRl~~G~lSD~~~~~~~~~ 409 (492)
.+++.+|++.|+.+.+..++....-...........+. ++.++. .+..... ..+...++...++.++||+++|
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~---- 294 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL-FTVLVLVQNLVGTVASAPLVPGMVARIGKK---- 294 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----
Confidence 46788999999988776555433211111112222222 333221 1111111 1344555666777777777433
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCC---chhHHHHHHHHhhhcchhhhHHHHHHHhh-------cCCCcccccccce----
Q 039263 410 RPLLFTFVLLFSCVGHPFIAYGIP---NSLYAASVIIGFCFGAQWPLLFAIISEIF-------GLKYYSTLYNFGA---- 475 (492)
Q Consensus 410 R~~~l~i~~~l~~~~~ll~~~~~~---~~l~~~~~liG~~~G~~~~~~P~i~se~F-------G~k~~g~nyg~~~---- 475 (492)
..+.+..++..++.+++...+. ..+++..++.|++.|.......++.+|.= |.|+-|..++...
T Consensus 295 --~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k 372 (448)
T PRK09848 295 --NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK 372 (448)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH
Confidence 3344455555555544433221 12345566778888888888888877753 5566677776643
Q ss_pred ehhhHHHHHHhh
Q 039263 476 VASPVGAYILNV 487 (492)
Q Consensus 476 la~~~gs~l~~~ 487 (492)
+++.+|+.+...
T Consensus 373 lg~aig~~i~g~ 384 (448)
T PRK09848 373 CGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHH
Confidence 444555444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.5e-07 Score=95.66 Aligned_cols=134 Identities=10% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHhcchhHHHHHHHHHhhccceeEEecchhH-HHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchH
Q 039263 334 LQALFSIDMLIIFIATTCGVGGTLTAIDNLGQ-IGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPL 412 (492)
Q Consensus 334 ~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~-I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~ 412 (492)
++.++++.|+.+....++..... ...+.... ..+....+....+...++..+...++-++++.++||++||+
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~-~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~------ 297 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIAS-NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI------ 297 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHH-HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH------
Confidence 44568888887766554433211 11111111 11111112222334445556778888889999999997653
Q ss_pred HHHHHHHHHHHHHHHHH---hcCC---chhHHHHHHHHhhhcchhhhHHHHHHHh-------hcCCCcccccccc
Q 039263 413 LFTFVLLFSCVGHPFIA---YGIP---NSLYAASVIIGFCFGAQWPLLFAIISEI-------FGLKYYSTLYNFG 474 (492)
Q Consensus 413 ~l~i~~~l~~~~~ll~~---~~~~---~~l~~~~~liG~~~G~~~~~~P~i~se~-------FG~k~~g~nyg~~ 474 (492)
.+.+..++.+++.+.+. .... ..+.+..++.|+++|..+.+.+++++|. .|.|+-|..|++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~ 372 (473)
T PRK10429 298 LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQ 372 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHH
Confidence 22233333333322211 1111 1345566778999999999999999999 7777777777774
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-09 Score=115.03 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=75.7
Q ss_pred hhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhhccccchhh
Q 039263 65 TLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPK-PQVWQMCLYICIGANSQSFANT 142 (492)
Q Consensus 65 ~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~-~~~~~l~~~~~l~g~g~~~~~~ 142 (492)
+.+++..+..+|..+ ++..|.+.||+|+|.++.++.++..+|..+.. ..+. .+.+.++..-.+.|.|.|..++
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-----FAPSYNNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccc
Confidence 455667777888876 78999999999999999999999988875433 2220 0245455555677888888877
Q ss_pred hhhhhhhhhcCC-CCCceeeehhHhhhhhHH
Q 039263 143 GALVTCVKNFPE-SRGSVLGLLKGFVGLSGA 172 (492)
Q Consensus 143 a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~ 172 (492)
.........=|+ +||....+...+..+|..
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~ 152 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGIL 152 (451)
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 777777777764 799999988777665533
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.1e-06 Score=83.94 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=92.7
Q ss_pred HHhcchhHHHHHHHHHhhccceeEEecchhHHHhh---cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCch
Q 039263 335 QALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSS---LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRP 411 (492)
Q Consensus 335 ~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~s---lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~ 411 (492)
+.+|++++|+..+.+++-.|....+-+......+. +|+++.+.+..++.+..+-.+||++.+.+.||+++|+
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~----- 209 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR----- 209 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----
Confidence 46889999999888888887766555545555542 4777778888899999999999999999999996543
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 412 LLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 412 ~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
.+.+..++.++..++..............++|++.+..+...-+...+.++ +|-++.-+++
T Consensus 210 -~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~ 270 (310)
T TIGR01272 210 -YLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL 270 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH
Confidence 233333444444333323222333446668899999999998888888887 4445444443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-05 Score=80.02 Aligned_cols=316 Identities=15% Similarity=0.103 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHH
Q 039263 29 WFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFG 106 (492)
Q Consensus 29 w~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~G 106 (492)
|+.+++-+++.+..=+ .-+-+--=+++++.+|.|-++.+++ +.=....+.+++++..+..|+|++..+..+-++..+|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666655544 3455556678899999999998887 4445556678999999999999999999999999888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcCCCh
Q 039263 107 YFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNS 186 (492)
Q Consensus 107 y~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~ 186 (492)
-.+ ....+ .+.+..=..++|.|++..+.=-=...-|+||+|-|..+|+-..-.+.++++-+.+.
T Consensus 91 ~~i------R~~~~--~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~la-------- 154 (395)
T COG2807 91 ILI------RSLGG--LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALA-------- 154 (395)
T ss_pred HHH------Hhccc--HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhh--------
Confidence 531 22221 33343335667777776655222223489999999999997766666655543211
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHh
Q 039263 187 KALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLF 266 (492)
Q Consensus 187 ~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~ 266 (492)
+ ++.++. .+-+.....+... ..++ ++.-
T Consensus 155 ----------v--------pla~~~-----~gW~~aL~~WAl~-----------allA------------------l~~W 182 (395)
T COG2807 155 ----------V--------PLAQHS-----GGWRGALGFWALL-----------ALLA------------------LLIW 182 (395)
T ss_pred ----------h--------HHHHhh-----ccHHHHHHHHHHH-----------HHHH------------------HHHH
Confidence 0 011000 0001111100000 0000 0001
Q ss_pred hhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHH
Q 039263 267 LPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIF 346 (492)
Q Consensus 267 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf 346 (492)
.| +. +++ +.+ . .+. + .++-....|++.=|.+=
T Consensus 183 lP------q~---~r~---------~~~-------~------------------~~~-~----~~~~~~vw~~~~aW~vt 214 (395)
T COG2807 183 LP------QA---LRE---------QAA-------S------------------IAT-K----LVSVRKVWRSPLAWQVT 214 (395)
T ss_pred hh------hc---ccc---------ccc-------c------------------ccc-c----cccccccccCchhHHHH
Confidence 11 10 000 000 0 000 0 01112457777777666
Q ss_pred HHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 039263 347 IATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHP 426 (492)
Q Consensus 347 ~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~l 426 (492)
+-+-..+..--.++.=+-+|.++.|+++.+++..+++..+.....-+..-.+-+|..+ +|++ .+...+.+.++..
T Consensus 215 LfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n----~r~~-~~~~~~~~l~G~~ 289 (395)
T COG2807 215 LFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN----QRPL-VVLALLLMLVGLV 289 (395)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc----cchH-HHHHHHHHHHHHH
Confidence 5555555544455566889999999999999999999999999988888888777432 3444 4444555555554
Q ss_pred HHHhcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCC
Q 039263 427 FIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLK 465 (492)
Q Consensus 427 l~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k 465 (492)
-+.+.+....+.-.++.|++.|+.|++.=.++.+..-..
T Consensus 290 G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a 328 (395)
T COG2807 290 GLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDA 328 (395)
T ss_pred HHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCCh
Confidence 343444444444478999999999999988888877543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.4e-06 Score=85.09 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=93.8
Q ss_pred cccccccccHH-HHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 039263 44 ATYMFGLYSSD-IKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKP 121 (492)
Q Consensus 44 t~Y~fS~ys~~-L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~ 121 (492)
..+.+..+.|. +++++|+++.+.+.+.....++.. .+++.|++.||+|+|....++.++..++..++........ .
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 298 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL--G 298 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Confidence 34555556665 456899999998887555555554 4789999999999999988888877777665553321111 1
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHH
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYH 179 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~ 179 (492)
+.+.+.....+.|.|.+..+........+.+|++||.+.++........+.+..++..
T Consensus 299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 299 SWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333445566777777777778888889999999999877665566777777655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.5e-05 Score=81.64 Aligned_cols=322 Identities=16% Similarity=0.115 Sum_probs=182.6
Q ss_pred hhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhh
Q 039263 65 TLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTG 143 (492)
Q Consensus 65 ~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a 143 (492)
+.+++.....+|+.+ .++.|++.|++|+|.+++++.+++.+|+.+...+. + ++.+..--++.|.|.|.....
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----~--~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----S--WYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----h--HHHHHHHHHHhccchhhhhhc
Confidence 457888888888876 88999999999999999999999999998777553 2 444554556788888887655
Q ss_pred hhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHHHhhhhcccccccc--ccch
Q 039263 144 ALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDN--SKALILLIAWLPAAISFVFLRTFRIIKIV--RQAN 218 (492)
Q Consensus 144 ~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~--~~~fllfla~~~~~v~~~~~~~i~~~~~~--~~~~ 218 (492)
+-.....-=|. .||..+.+..-+.. .+..+..+.+.+.+++ .=++.+.+...|.++-.+++.++..-|.. ++..
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~ 241 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR 241 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC
Confidence 55555555575 79999998877776 5566666666666654 22355666666666655554443211110 0000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCcccc
Q 039263 219 ELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKI 298 (492)
Q Consensus 219 ~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (492)
.++.-. . +......++ ++ .+.+...
T Consensus 242 ~~~a~~----~-------------l~~l~g~~~---------------------------------~~-----~~~~~~~ 266 (513)
T KOG0254|consen 242 LEEAKR----S-------------LKRLRGLSP---------------------------------ED-----VEVELEL 266 (513)
T ss_pred hHHHHH----H-------------HHHHhCCCC---------------------------------cc-----hHHHHHH
Confidence 000000 0 000000000 00 0000000
Q ss_pred ccCCCCCCCCCCccccccccccccCCCCCCCcccHH----HHhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCC
Q 039263 299 VTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTIL----QALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPA 374 (492)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~----~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~ 374 (492)
.+ .....+ ......+..+. +..+++-++..-+..+.....=-.+++-..+|.+..|..+
T Consensus 267 ~~--------------~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~ 329 (513)
T KOG0254|consen 267 LK--------------IKLLVE---AEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS 329 (513)
T ss_pred HH--------------HHHHHh---hhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC
Confidence 00 000000 00000000111 2345556666666666666333566777889988888764
Q ss_pred CccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc----C--------CchhH-HHHH
Q 039263 375 RSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG----I--------PNSLY-AASV 441 (492)
Q Consensus 375 ~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~----~--------~~~l~-~~~~ 441 (492)
.. .....+.++.|.++=++..++-||++| ...+......|.++++++... . ...+. ....
T Consensus 330 ~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR------r~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (513)
T KOG0254|consen 330 DT-FLASIILGVVNFLGTLVATYLVDRFGR------RKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLC 402 (513)
T ss_pred ch-HHHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHH
Confidence 43 445577788899998999999999954 446666666666666543211 1 01122 2222
Q ss_pred HHHhhhcchhhhHHH-HHHHhhcCCCccccccc
Q 039263 442 IIGFCFGAQWPLLFA-IISEIFGLKYYSTLYNF 473 (492)
Q Consensus 442 liG~~~G~~~~~~P~-i~se~FG~k~~g~nyg~ 473 (492)
+.-.+|...++-.|- +.+|+|=.|.-++-.++
T Consensus 403 ~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~ 435 (513)
T KOG0254|consen 403 LFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASL 435 (513)
T ss_pred HHHHHHhcccccchhhhhhccCcHhHHhhhHHH
Confidence 224456666666676 66999976654544444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0002 Score=77.46 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=81.7
Q ss_pred ccccccccc-HHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 039263 44 ATYMFGLYS-SDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEIT-PPWVVLAIGSIMNFFGYFMIWLAVTGRIPK 120 (492)
Q Consensus 44 t~Y~fS~ys-~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~-Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~ 120 (492)
+.|.+..+- .-+++++|+++.+...+........+ ..+++|++.||+ |+|.++++|.++..+|+.++.. .+. +
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~--~~~--~ 99 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA--SEI--H 99 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH--hhc--c
Confidence 456555444 44567799999998887544445554 477999999999 9999999999999999865431 111 1
Q ss_pred chhHHHHHHHHHhhccccchhhhhhhhhhhhcCC---CCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 121 PQVWQMCLYICIGANSQSFANTGALVTCVKNFPE---SRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 121 ~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~---~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
.....+... +...|.|......-....+.||+ +|..+.++.-....+|+.+- ++...+.
T Consensus 100 ~~~~~l~l~--li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~ia-p~l~g~L 161 (493)
T PRK15462 100 PSFLYLSLA--IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIA-PIACGYA 161 (493)
T ss_pred hhHHHHHHH--HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHH-HHHHHHH
Confidence 111111111 22233444333333345688985 48888888766666655444 4443444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.5e-05 Score=79.56 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=83.7
Q ss_pred HhhCcc-cccccccHHHHHhhCCChhhhhHHHHHhhhhccccccceeeeccCC-----cHHHHHHHHHHH-HHHHHHHHH
Q 039263 40 AVAGAT-YMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEITP-----PWVVLAIGSIMN-FFGYFMIWL 112 (492)
Q Consensus 40 l~~Gt~-Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~~~~~G~~~D~~G-----pr~~~~iG~vl~-~~Gy~~~~~ 112 (492)
++-|.. -....-.+-+++++|+|.+|++.+.....+.-.+-++.|.+.||+| +|..++++.++. .+.+..
T Consensus 36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~--- 112 (468)
T TIGR00788 36 FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL--- 112 (468)
T ss_pred HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh---
Confidence 444444 3445667788889999999998887666777677778999999998 777788888766 344322
Q ss_pred HHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhh
Q 039263 113 AVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVG 168 (492)
Q Consensus 113 ~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~G 168 (492)
... .++ ..........+.+.+....|.++=...++..|++++...++...+++
T Consensus 113 -l~~-~~~-~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~ 165 (468)
T TIGR00788 113 -LPG-KVS-SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWG 165 (468)
T ss_pred -ccc-ccc-hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHH
Confidence 211 121 12222235567788888999999999999999555554455545554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-06 Score=94.60 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=99.9
Q ss_pred HHhcchhHHHHHHHHHhhccc-e--eEEecc-hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCc
Q 039263 335 QALFSIDMLIIFIATTCGVGG-T--LTAIDN-LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPR 410 (492)
Q Consensus 335 ~~l~t~~FWllf~~~~~~~g~-G--l~~i~n-~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R 410 (492)
+.-.++..|.+++.+.++... | ..+++. +.++.+.++.+..+.+...+++.++..+|.+++|+++||++||
T Consensus 158 ~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR----- 232 (742)
T TIGR01299 158 ECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK----- 232 (742)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence 344567788776655443322 1 122222 3344456788777778888999999999999999999999654
Q ss_pred hHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHH
Q 039263 411 PLLFTFVLLFSCVGHPFIAYG-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484 (492)
Q Consensus 411 ~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l 484 (492)
..+.+..++..++.++..+. ....+++.-.+.|++.|+...+.+++++|++..++-|..++++.+...+|..+
T Consensus 233 -~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il 306 (742)
T TIGR01299 233 -QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306 (742)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544443333 23456777788899999999999999999999999998888766555554433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00015 Score=78.68 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=86.4
Q ss_pred cccccHHHH-HhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 039263 48 FGLYSSDIK-TSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQ 125 (492)
Q Consensus 48 fS~ys~~L~-~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~ 125 (492)
-+.|+...+ +.++.+....++......+|..+ .++.|.+.||+|+|.+++++.++..++-.. .... .+++.
T Consensus 101 ~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~-----~a~a--~~~~~ 173 (521)
T KOG0255|consen 101 SSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGIL-----TAFA--PNYWM 173 (521)
T ss_pred CCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHH-----HHHh--CcHHH
Confidence 344455544 56666666666667777777776 678899999999999999888877766422 2222 34777
Q ss_pred HHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHH
Q 039263 126 MCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 126 l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~ 174 (492)
++.+=++.|++.+..++.+....+.+++ ++|+.+..+ ..+.-.++.+.
T Consensus 174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~ 222 (521)
T KOG0255|consen 174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLML 222 (521)
T ss_pred HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHH
Confidence 8888889999999999999999999995 679998888 54443444444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=81.23 Aligned_cols=126 Identities=9% Similarity=0.002 Sum_probs=73.0
Q ss_pred ccccccccH-HHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 039263 45 TYMFGLYSS-DIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQ 122 (492)
Q Consensus 45 ~Y~fS~ys~-~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~ 122 (492)
.+.+..+.| .+++++|+++.+.+.+.....+... ..+..|++.||+|+|....++.+...+.+..+ ... .+
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~---~~-- 304 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM--LMA---HS-- 304 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HHH---hh--
Confidence 444444455 4667899999988876333333333 36789999999999988777766554443222 111 11
Q ss_pred hHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHH
Q 039263 123 VWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQL 177 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i 177 (492)
.+.......+.+.+.+...........+.+|++||++.++......+|..+-..+
T Consensus 305 ~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l 359 (393)
T PRK15011 305 PAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSL 359 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 2222222233333333322333334467789999999998766555655544433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0004 Score=76.48 Aligned_cols=130 Identities=14% Similarity=0.185 Sum_probs=80.1
Q ss_pred ccchHHHHHHHHHHHHhhC--cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAG--ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSI 101 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~G--t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~v 101 (492)
...|.+...+++.+..+.. ..+..+.--+++-+.+|=+ .+..+++++-.++.. ..++.|++.|.+|+|...++|.+
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~ 116 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSL 116 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 3456555555555544433 1333333335677777754 455666666666654 36789999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeeh
Q 039263 102 MNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLL 163 (492)
Q Consensus 102 l~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~ 163 (492)
+..+|..+ .+...+ +-.++.=..+.|.|.|......+. ...--|+| |+...++.
T Consensus 117 l~vvG~Iv-----~atA~~--~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~ 171 (599)
T PF06609_consen 117 LGVVGSIV-----CATAQN--MNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIA 171 (599)
T ss_pred HHHhHHHH-----hhcCCc--HHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHH
Confidence 99999743 344443 344554455666666665554444 34555864 76655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.3e-05 Score=81.04 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=82.2
Q ss_pred HHHhhCC--ChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 039263 55 IKTSLGY--DQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYIC 131 (492)
Q Consensus 55 L~~~~~~--sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~ 131 (492)
.+++... .++|++++ +.-..+.-...++.|.+.||.|.|...++|-+..+..-.++. +. . +++.+.+.=.
T Consensus 95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa--fg---~--sy~~l~vAR~ 167 (464)
T KOG3764|consen 95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA--FG---N--SYPMLFVARS 167 (464)
T ss_pred chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH--Hc---c--hhHHHHHHHH
Confidence 4444444 44556665 333333334689999999999999999999998877654433 22 2 2565556678
Q ss_pred HhhccccchhhhhhhhhhhhcCC--CCCceeeehhHhhhhh
Q 039263 132 IGANSQSFANTGALVTCVKNFPE--SRGSVLGLLKGFVGLS 170 (492)
Q Consensus 132 l~g~g~~~~~~a~l~t~~k~FP~--~RG~a~Gi~~a~~GLs 170 (492)
+.|.|+.+++|+.+.-.++-||| +||.+.|+..+|.+||
T Consensus 168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG 208 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLG 208 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhcc
Confidence 99999999999999999999996 4799999999999886
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=78.01 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=62.1
Q ss_pred HhhCCChhhhhHH-HHHhhhhccccccceeeecc----CCcHH-HHHHHHHHHHHHHHHHHHHHhcCCCCc-hhHHHHHH
Q 039263 57 TSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEI----TPPWV-VLAIGSIMNFFGYFMIWLAVTGRIPKP-QVWQMCLY 129 (492)
Q Consensus 57 ~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~----~Gpr~-~~~iG~vl~~~Gy~~~~~~~~g~i~~~-~~~~l~~~ 129 (492)
+.+|++...++++ .+.-..-...-+..|.+.|| +|+|. -+++|++...+.+.++|.. -+.-... ..|.+..|
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-PDLSMNGKMIYAAITY 116 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC-CCCCcchHHHHHHHHH
Confidence 6789999988886 55555555567889999997 47654 4567888888887766632 1110111 12333222
Q ss_pred HHH--hhccccchhhhhhhhhhhhcCCCCCceeeehhHh
Q 039263 130 ICI--GANSQSFANTGALVTCVKNFPESRGSVLGLLKGF 166 (492)
Q Consensus 130 ~~l--~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~ 166 (492)
.+. +-.-...-|. ++...+..=||+|..+++.-..+
T Consensus 117 ~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~ 154 (460)
T PRK11462 117 TLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVL 154 (460)
T ss_pred HHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHH
Confidence 221 1111112222 35555544488999888865433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=79.23 Aligned_cols=133 Identities=23% Similarity=0.314 Sum_probs=100.8
Q ss_pred cccccccccHHHHHhh-CCChhhhhHHHHHhhhhccc-cccceeeeccCCcHH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 039263 44 ATYMFGLYSSDIKTSL-GYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWV-VLAIGSIMNFFGYFMIWLAVTGRIPK 120 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~-~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~-~~~iG~vl~~~Gy~~~~~~~~g~i~~ 120 (492)
....+..+.++..++. |+++.+.+.+.....++... .+..|++.||+|+|. ...++.++..+++.++... .+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~ 264 (352)
T cd06174 190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-----PS 264 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----cc
Confidence 3455566666666654 99999998876666666654 788899999999999 8888999888887655422 11
Q ss_pred chhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 121 PQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 121 ~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
.+.......+.|.+.+..++.......+.+| ++||++.|+......++..+...+.....+
T Consensus 265 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 265 --LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred --HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666777788888888888999999 689999999988888888887777766664
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.4e-05 Score=83.16 Aligned_cols=132 Identities=16% Similarity=0.104 Sum_probs=73.5
Q ss_pred hCcccccccccHHHH-HhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039263 42 AGATYMFGLYSSDIK-TSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIP 119 (492)
Q Consensus 42 ~Gt~Y~fS~ys~~L~-~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~ 119 (492)
....|.+..|.|+.- +.+|++..+...+.....++..+ .+..|++.||+|+|.++.++.+...++-......... .
T Consensus 263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~ 340 (490)
T PRK10642 263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS--N 340 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC--C
Confidence 345677778888854 66899987766655555666654 5678999999999998888876443332222211111 1
Q ss_pred CchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHH
Q 039263 120 KPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQL 177 (492)
Q Consensus 120 ~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i 177 (492)
+ .+.+....++.+.+.+...........+.||. .||++.|+.-...-+++.+...+
T Consensus 341 ~--~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i 397 (490)
T PRK10642 341 V--IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTL 397 (490)
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 1 22222222222222222222222333468986 59998887544333344443333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=77.74 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=74.6
Q ss_pred HHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 039263 53 SDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYIC 131 (492)
Q Consensus 53 ~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~ 131 (492)
..+++.+|.++.+.+.+........ ...+..|++.||+|+|.+..++.+...+++..+.. . + +.|.+.....
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--~---~--~~~~~~~~~~ 296 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA--D---N--SLWALLMLQL 296 (375)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--H---H--HHHHHHHHHH
Confidence 3456788999988877533222222 23578899999999999888777665555543321 1 1 2344443444
Q ss_pred HhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHH
Q 039263 132 IGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 132 l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
+.|.+.+...........+.+|++||.+.|+......++..+-..+.
T Consensus 297 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 297 LNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555566788899999999987655555554444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-05 Score=79.58 Aligned_cols=144 Identities=17% Similarity=0.076 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHH
Q 039263 29 WFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGY 107 (492)
Q Consensus 29 w~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy 107 (492)
|..+++..+.+......|. |.++.-+++|+++.+.+.+.....+... .++..|++.||+|+|..+.+|.++..+++
T Consensus 208 ~~~l~~~~l~~~~~~~~~~---~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~ 284 (382)
T TIGR00902 208 LRFLAAVCLIQGAHAAYYG---FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW 284 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 4455555555555444444 4466556699999999886444444444 47889999999999999999999999998
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehh-HhhhhhHHHHHHHHHHHcC
Q 039263 108 FMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLK-GFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 108 ~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~-a~~GLsa~i~s~i~~~~f~ 183 (492)
..+.. .+ +.|.+.....+-|.+.+....+++.-..+. |+ +|++..|+.. ...|+|..+-+.+.....+
T Consensus 285 ~~~~~-----~~--~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 285 AIIGA-----IE--AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHh-----Hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65431 22 246566667777777788888877777777 64 7888888864 4667777776665555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.2e-06 Score=85.12 Aligned_cols=113 Identities=7% Similarity=0.141 Sum_probs=89.6
Q ss_pred EEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-Cchh
Q 039263 358 TAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSL 436 (492)
Q Consensus 358 ~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l 436 (492)
+....+.++.+++|.++.+.+..++...+...++++.+|.++||++|| ..+....++..++.++....+ ...+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR------YVVILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH------HHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 334457788889999888889999999999999999999999999654 355556666666665544333 4467
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 437 YAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 437 ~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
++.-.+.|++.|..+...++++.|+|..|+.++..++...
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~ 151 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFG 151 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHH
Confidence 7788899999999999999999999998888887777543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.8e-05 Score=79.05 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=78.6
Q ss_pred cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHH-HHHHHHHHHHHHHHHHHhcCCCCc
Q 039263 44 ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLA-IGSIMNFFGYFMIWLAVTGRIPKP 121 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~-iG~vl~~~Gy~~~~~~~~g~i~~~ 121 (492)
..|.+..|.|...+++|++..+...+.....++.. ..+..|++.||+|+|.... .+.+...++...++.... ... .
T Consensus 237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~-~ 314 (402)
T TIGR00897 237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ-HFG-H 314 (402)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH-ccC-C
Confidence 35677778888888899999887765443444444 3678899999999887653 333333333222222111 111 1
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
+.+.+..+..+.|.+.+.. ........+.+|++||++.|+.-....+++.+-..+...+.+
T Consensus 315 ~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~ 375 (402)
T TIGR00897 315 SFAVALIIAIALGIFLAGY-VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG 375 (402)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333333333334433332 222222345679999999999877777776665555544443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.7e-05 Score=79.32 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=88.5
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
.|....|.|++.++.|++..+.+.+.....++.. ..+..|++.||+|+|....++.+...++...+. ..++ .
T Consensus 236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-----~~~~--~ 308 (406)
T PRK11551 236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-----AAPS--F 308 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----hcCc--H
Confidence 4555566788888899999988887555555554 478999999999999988766555555543222 1122 3
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
+.+....++.|.+.+..++.......+.+|+ +||++.|+.....++++++-..+...+.+
T Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 309 AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 3343344444544444455556667788885 69999999988888887776666665554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.3e-05 Score=79.61 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=67.6
Q ss_pred cccccccccHH-HHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 039263 44 ATYMFGLYSSD-IKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKP 121 (492)
Q Consensus 44 t~Y~fS~ys~~-L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~ 121 (492)
..|.+..|-|+ +++++|+++.+.+.. +.....+...+++.|++.||+|+|.+..+++++..+....+..... ..++
T Consensus 258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~- 335 (432)
T PRK10406 258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NVSS- 335 (432)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cCCc-
Confidence 35666677666 566789998887775 3334444445778899999999998887776654333222221111 1111
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHh
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGF 166 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~ 166 (492)
+.+.+. ...++....+......-....++||. +||++.|+.-+.
T Consensus 336 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 336 PYAAFG-LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 122121 11222222222222222345689986 699999997643
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00066 Score=73.22 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=80.5
Q ss_pred HhhCccccccccc---HHHHHhhCCChhhhhHHHHHh-hhhccccccceeeec----cCCcHHHHHHH-HHHHHHHHHHH
Q 039263 40 AVAGATYMFGLYS---SDIKTSLGYDQSTLNLLSFSK-DVGGNVGVLSGLINE----ITPPWVVLAIG-SIMNFFGYFMI 110 (492)
Q Consensus 40 l~~Gt~Y~fS~ys---~~L~~~~~~sq~~l~~is~~~-~vg~~~~~~~G~~~D----~~Gpr~~~~iG-~vl~~~Gy~~~ 110 (492)
...|..+.|++.. ++..+.+|.+..+..++..+. ..+....+..|.+.| |+|+|.+.+++ .+...+++.++
T Consensus 12 ~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll 91 (477)
T TIGR01301 12 VAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI 91 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 3455667776644 446678999999998874444 444456899999999 59999988764 55555565544
Q ss_pred HHHHhcCCC---------Cchh---HHHHHHHHHhhccccchhhhhhhhhhhhcCCC-C--CceeeehhHhhhhhHHHH
Q 039263 111 WLAVTGRIP---------KPQV---WQMCLYICIGANSQSFANTGALVTCVKNFPES-R--GSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 111 ~~~~~g~i~---------~~~~---~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-R--G~a~Gi~~a~~GLsa~i~ 174 (492)
... ..+. .... +.......+...+........-.-....+|++ | +.+.++...+.++|+.+-
T Consensus 92 ~~~--~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg 168 (477)
T TIGR01301 92 GFA--ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLG 168 (477)
T ss_pred HhC--chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1110 0011 11111122334455555555556677888854 3 678888777777765554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.8e-05 Score=80.40 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=86.5
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC---
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPK--- 120 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~--- 120 (492)
.+....|.+.+.+++|++..+.........++. ...+++|++.||+|+|....++.++..++..++..........
T Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (481)
T TIGR00879 300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379 (481)
T ss_pred CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 455667888888999999876666544444444 3477889999999999999888887777765554221111111
Q ss_pred --chhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 121 --PQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 121 --~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
...+........++.+.++. ........+.+|+ +||++.|+......+++++...+...+.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWG-PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred chhHHHHHHHHHHHHHHHcccc-CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121222222222232221 2222334678885 69999999888888888888777666554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=76.69 Aligned_cols=140 Identities=14% Similarity=0.016 Sum_probs=86.3
Q ss_pred ccccccccHHH-HHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 039263 45 TYMFGLYSSDI-KTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQ 122 (492)
Q Consensus 45 ~Y~fS~ys~~L-~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~ 122 (492)
.+.|..+.|.+ ++.+|++..+.........++... .+..|++.||+++|....+|.++..+|..++....... . .+
T Consensus 231 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-~~ 308 (406)
T PRK15402 231 LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS-S-HA 308 (406)
T ss_pred HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc-c-cc
Confidence 45666666654 677899988877754433444433 67889999999999999889888877876554432111 1 12
Q ss_pred hHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcCCCh
Q 039263 123 VWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNS 186 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~ 186 (492)
.+.+....++.|.|.+..++.........-|++||.+.++......++..+=..+....++...
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 2323334444555555544433333334457899999999766555555555555555555433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.2e-05 Score=75.60 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=75.6
Q ss_pred hhCcccccccccHHHH-HhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHH-HHHHHHHHHhcC
Q 039263 41 VAGATYMFGLYSSDIK-TSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFF-GYFMIWLAVTGR 117 (492)
Q Consensus 41 ~~Gt~Y~fS~ys~~L~-~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~-Gy~~~~~~~~g~ 117 (492)
+....+.+..|-+..- +++|+++.+.+.+.....++.. ..++.|++.||+|+|....+++.+..+ ++.... .....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 309 (394)
T TIGR00883 231 TTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM-ALLDS 309 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 3344566666666654 7789999888776444444444 467899999999999987755554433 322221 22211
Q ss_pred CCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehh
Q 039263 118 IPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLK 164 (492)
Q Consensus 118 i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~ 164 (492)
.+.+.+....++.+.+.+..+........+.+|+ +||++.|+..
T Consensus 310 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 354 (394)
T TIGR00883 310 ---GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAY 354 (394)
T ss_pred ---CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehh
Confidence 1234444444555555666666667777889996 6999999853
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.8e-05 Score=78.02 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=88.7
Q ss_pred cccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 039263 48 FGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQM 126 (492)
Q Consensus 48 fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l 126 (492)
++.|..+..+..+.+..+.+.+.....+.. ...++.|++.||+|+|....++.++..+++.++.. .++ .|.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~-----~~~--~~~~ 318 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF-----ATG--PLEV 318 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh-----ccc--HHHH
Confidence 455554444444677677777533333333 34779999999999999998888888887765442 222 3444
Q ss_pred HHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeeh-hHhhhhhHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHh
Q 039263 127 CLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLL-KGFVGLSGAILTQLYHAFYGD-NSKALILLIAWLPAAISFV 203 (492)
Q Consensus 127 ~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~-~a~~GLsa~i~s~i~~~~f~~-~~~~fllfla~~~~~v~~~ 203 (492)
.....+.+.+.+...........+++|++ |+++.+.. ....++|+.+-..+.....+. +...-++.+++...+..++
T Consensus 319 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~ 398 (420)
T PRK09528 319 SILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLI 398 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence 44455556555555555555567788864 67776653 334556665555554443331 2333344444444444444
Q ss_pred hhhccc
Q 039263 204 FLRTFR 209 (492)
Q Consensus 204 ~~~~i~ 209 (492)
.....|
T Consensus 399 ~~~~~~ 404 (420)
T PRK09528 399 SVFTLS 404 (420)
T ss_pred HHHHhc
Confidence 433443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=76.29 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=68.2
Q ss_pred cHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 039263 52 SSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYI 130 (492)
Q Consensus 52 s~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~ 130 (492)
.+-+++++|+|+.+...+.....++.. ..++.|++.||+|+|.. .++..+...+...... .. + +.+.++...
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~-~~---~--~~~~~~~~~ 301 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLP-AA---N--SEWHLSVLS 301 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHH-Hh---c--hHHHHHHHH
Confidence 445677789999888776444444444 36788999999997764 4555555555433221 11 1 234444444
Q ss_pred HHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHH
Q 039263 131 CIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 131 ~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i 173 (492)
.+.|.+.............+..|++||.+.|+..+..-+|..+
T Consensus 302 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 344 (390)
T PRK03545 302 IFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGA 344 (390)
T ss_pred HHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4444444433333344455678999999888776554444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.6e-05 Score=80.35 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=83.5
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHH-----hc-CCchh
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIA-----YG-IPNSL 436 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~-----~~-~~~~l 436 (492)
..++.++++.++.+.+...+.+.+...++.+.+|.++||+++|+ .+.+..++..+..+++. .. ....+
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ------FLPFLLILSAICMLGFGASLGSGSVSLGLM 125 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc------hHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 45677788988888888899999999999999999999997654 33333333333222211 11 22345
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHH
Q 039263 437 YAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAY 483 (492)
Q Consensus 437 ~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~ 483 (492)
.+.-.+.|++.|..+.....+++|+|..++.|+..|+...+..+|..
T Consensus 126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~ 172 (467)
T PRK09556 126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA 172 (467)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh
Confidence 66667789999999999999999999999999988887655555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.4e-05 Score=82.15 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=90.1
Q ss_pred HHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 039263 55 IKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIG 133 (492)
Q Consensus 55 L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~ 133 (492)
+++.+|++..|.+.+.....++.. ..++.|++.||+|+|....+|.++..+|+.++..... ++.+.+.+.....+.
T Consensus 282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 358 (485)
T TIGR00711 282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---PDTPFLAIALPQFIR 358 (485)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHH
Confidence 455689999998887555555554 4788999999999999999999888888765542221 122344444455667
Q ss_pred hccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 134 ANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 134 g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
|.|.+..+........+.+| ++||.+.|+......+|+++-..+...++.
T Consensus 359 g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 359 GFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666778888 579999999877777777777666555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00022 Score=74.30 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=87.3
Q ss_pred hhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039263 41 VAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIP 119 (492)
Q Consensus 41 ~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~ 119 (492)
+.+..+.|..+.|.+.+++|+++.+.+.......++... ++.++++.||+|+|.....+.+...++...+++..... .
T Consensus 215 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 293 (401)
T PRK11043 215 CSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS-H 293 (401)
T ss_pred HHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 334456666777888888999999888754333333333 56778999999988876666555555544433322111 1
Q ss_pred CchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 120 KPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 120 ~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
...+.......+.+.+.+..+........+.+|++||.+.|+..+.....+.....+...+.+
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 294 -PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 122333333344455666666766667778899999999999876644455555555544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.2e-05 Score=77.73 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=86.9
Q ss_pred cccHHHHHh-hCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 039263 50 LYSSDIKTS-LGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMC 127 (492)
Q Consensus 50 ~ys~~L~~~-~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~ 127 (492)
.+-|.+.++ +|++..+.+.+.....++... +++.|++.||.+++..+.++.++..+++.++.. .+ +.+...
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~--~~~~~~ 316 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-----MP--MWILAV 316 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-----cc--hHHHHH
Confidence 344555444 999988888775555555544 678899999988887777787777777654321 12 234344
Q ss_pred HHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHhh
Q 039263 128 LYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGD-NSKALILLIAWLPAAISFVF 204 (492)
Q Consensus 128 ~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~-~~~~fllfla~~~~~v~~~~ 204 (492)
...++.|.+.+...........+.+|+ +||++.|+.....-+|..+=..+...+.+. +....++..+....+++.+.
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 317 LCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 444455565555555445566788996 599999987654444444443333333321 33333444444444444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.2e-05 Score=75.12 Aligned_cols=127 Identities=9% Similarity=-0.051 Sum_probs=80.4
Q ss_pred ccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 039263 51 YSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLY 129 (492)
Q Consensus 51 ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~ 129 (492)
+-++..+++|++..+...+.....++..+ .+..|++.||+|+|....++.++..+++.++... .. ...+.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~ 301 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI--PM---LNDVLFLAT 301 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc--cc---chhHHHHHH
Confidence 44555667889888877765555555544 7889999999999999888888888887654322 11 111222222
Q ss_pred HHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 130 ICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 130 ~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
..+.+.+.+..++.......+.+|+ +||++.|+......+++.+-..+.....
T Consensus 302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333343333333445678874 6999999988777777766655544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=82.82 Aligned_cols=132 Identities=15% Similarity=0.109 Sum_probs=98.5
Q ss_pred chhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHH
Q 039263 339 SIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVL 418 (492)
Q Consensus 339 t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~ 418 (492)
.+.+|+++..+++......++......+.+++|.++.+.+..++...+...++.+.+|.++||++||+ .+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~~ 82 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN------IFFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH------HHHHHH
Confidence 34689888888776555445556688888899988777777788889999999999999999997653 333334
Q ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 419 LFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 419 ~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
++..++.++..... ...+++.-++.|++.|..+......+.|.+..++.++.+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (471)
T PRK10504 83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTL 141 (471)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 44444444433332 33566777788999999999999999999998888888777543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0018 Score=66.69 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHH-HHH
Q 039263 30 FMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNF-FGY 107 (492)
Q Consensus 30 ~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~-~Gy 107 (492)
+..+++.--+--++-.-.=|..++.+.+..|.+..|.++++...+.|..+ ....|+..|++|+|.-..+-.+..+ .||
T Consensus 79 l~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~ 158 (528)
T KOG0253|consen 79 LFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGV 158 (528)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHH
Confidence 44555554444555555557889999999999999999999999999987 7899999999999985543333221 122
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCCh
Q 039263 108 FMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNS 186 (492)
Q Consensus 108 ~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~ 186 (492)
.+|.- +.+..+|++-++-|.|.|. +..-..-=..--|. +|++-+=.. ++...|..+-..+.-...++-.
T Consensus 159 ------is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g 228 (528)
T KOG0253|consen 159 ------ISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG 228 (528)
T ss_pred ------hhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence 24443 3344467777777777766 33333322333375 788766555 7776666655555555445445
Q ss_pred hHHHHHHHHHHHHHHH
Q 039263 187 KALILLIAWLPAAISF 202 (492)
Q Consensus 187 ~~fllfla~~~~~v~~ 202 (492)
=+|++|+...|....+
T Consensus 229 wr~~l~~~~~pl~~~a 244 (528)
T KOG0253|consen 229 WRYLLFTSSTPLMFAA 244 (528)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 5788888777765433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.6e-05 Score=77.18 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhhccceeEEecchhH-HHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQ-IGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~-I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
.||..++.+++......++..-..+ +.++++.++.+.+...++..+...++.+.+|.++||++|| ..+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR------YTTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence 5788888888766655554444553 7788999988888999999999999999999999999654 34555666
Q ss_pred HHHHHHHHHHhcC--CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccce
Q 039263 420 FSCVGHPFIAYGI--PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 420 l~~~~~ll~~~~~--~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
++.++.++..... ...+++...+.|++. +.+....++++|++..|+-++..++..
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~ 132 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAA 132 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHH
Confidence 6666665554433 234566777778884 456677889999998888777666643
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.2e-05 Score=79.15 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhhCcccccccccHHHHHhhCCCh--------hhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHH
Q 039263 30 FMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQ--------STLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGS 100 (492)
Q Consensus 30 ~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq--------~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~ 100 (492)
..++...+++......| .|.+...++.|+++ ++...+.....+.. ...++.|++.||+|+|.++.++.
T Consensus 212 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~ 288 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITN---IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSL 288 (418)
T ss_pred eHHHHHHHHHhHHHHHH---HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 34455555444443333 44355445566654 33344433333333 34688999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehh-HhhhhhHHHHHHHH
Q 039263 101 IMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLK-GFVGLSGAILTQLY 178 (492)
Q Consensus 101 vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~-a~~GLsa~i~s~i~ 178 (492)
++..+++.++... .... ...+.+....++.|.+.+..+.+......+++|+ +||++.|+.. ...++|+.+-..+.
T Consensus 289 ~~~~v~~~l~~~~-~~~~--~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 289 VAWALRFGFFAYG-DPEY--FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHHHHHHHHc-Ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9888876544321 1111 1123344445666666666666667777899995 6999999985 55666665554444
Q ss_pred HHHc
Q 039263 179 HAFY 182 (492)
Q Consensus 179 ~~~f 182 (492)
...+
T Consensus 366 G~l~ 369 (418)
T TIGR00889 366 GVMV 369 (418)
T ss_pred HHHH
Confidence 4333
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.3e-05 Score=78.64 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=99.0
Q ss_pred cchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHH
Q 039263 338 FSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFV 417 (492)
Q Consensus 338 ~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~ 417 (492)
.++++|+++...++....--.+..-..++.+++|.++.+.+...+...+++.++++.+|.++||++||+ .+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~------~~~~~ 77 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR------SYYLA 77 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHH
Confidence 466789888877664333223334567777788988888889999999999999999999999997764 34444
Q ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc----eehhhHHHHHHh
Q 039263 418 LLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG----AVASPVGAYILN 486 (492)
Q Consensus 418 ~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~----~la~~~gs~l~~ 486 (492)
.++..++.+.....+ ...+.+.-++.|++.|..+....+.+.|..-.++-++..+.. .+++.+|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 78 SLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555544433332 335567777889999988888777777777666667766663 445555555543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=74.90 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHH-HHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHH
Q 039263 29 WFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFG 106 (492)
Q Consensus 29 w~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~G 106 (492)
|..++...+.+...+..|.|. ++.+++ .|++.++++.+ +..+.+...+ .+.+|++.||+|+|..+.++.++...+
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~--~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLS--KLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556666666676677777753 455554 79999999886 4433445544 578999999999999888777655343
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC--CCCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 107 YFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP--ESRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 107 y~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP--~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
. +.+............+.+.....+.+...+....+.....++..+ ++||+..++..+..++|..+-..+.....
T Consensus 288 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 288 A-LLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred H-HHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233332222111112223333334444445544444555566664 46899999988888888777665544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=62.00 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=72.2
Q ss_pred ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCC
Q 039263 79 VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRG 157 (492)
Q Consensus 79 ~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG 157 (492)
.+++.|++.||+|+|....++.++..++....... + +.|.+.....+.|.+.+..++.......+.+|+ +|+
T Consensus 14 ~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
T TIGR00880 14 YSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----S--NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86 (141)
T ss_pred HHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----c--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence 36788999999999999999988888887654422 2 245555566677777777777777778899985 699
Q ss_pred ceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 158 SVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 158 ~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
++.|+......++..+-..+.....
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 9999988777777766665555444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=79.55 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=92.0
Q ss_pred ccccccc-HHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 46 YMFGLYS-SDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 46 Y~fS~ys-~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
|.+..|- ..+++.+|+|..|.+.......++.. .+++.|++.||+|+|..+.+|.++..+|+.++... ... .+.
T Consensus 276 ~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~--~~~--~~~ 351 (495)
T PRK14995 276 VGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT--DFS--TQQ 351 (495)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh--cCC--Cch
Confidence 3443343 45677799999998886544445444 47899999999999999988998888887655432 221 224
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
|....+.++.|.|.+..........++..|+ +||.++++......+|+++-..+...+
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666778888888887777778888885 689999987666555555544444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0003 Score=74.97 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=81.4
Q ss_pred cccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 039263 48 FGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQM 126 (492)
Q Consensus 48 fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l 126 (492)
...|.|.+.++.|+++.+.........+.. ...+.+|++.||+|+|.+.++|.++..+++.++......... ..+..
T Consensus 290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~--~~~~~ 367 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP--GIVAL 367 (479)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc--cHHHH
Confidence 345678888889998765544433333332 336789999999999999999999999988777654332221 12221
Q ss_pred -HHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHH
Q 039263 127 -CLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYH 179 (492)
Q Consensus 127 -~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~ 179 (492)
+......+.+.++ .+.......+.||+ +||.+.|+..+...+++.+.+.++-
T Consensus 368 ~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p 421 (479)
T PRK10077 368 LSMLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFP 421 (479)
T ss_pred HHHHHHHHHHhccc-cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2212222222222 12334556778985 7999999988777777776655553
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00033 Score=71.97 Aligned_cols=145 Identities=11% Similarity=0.114 Sum_probs=81.4
Q ss_pred ccccccccH-HHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHH-HHHHHHHHHhcCCCCc
Q 039263 45 TYMFGLYSS-DIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFF-GYFMIWLAVTGRIPKP 121 (492)
Q Consensus 45 ~Y~fS~ys~-~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~-Gy~~~~~~~~g~i~~~ 121 (492)
.+.+-.+.+ .+++++|+++.+.+.+.....++. ...++.|++.||+|+|.+..++.++..+ +..+... +..+ .
T Consensus 210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~-~ 285 (377)
T PRK11102 210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVS---ALLD-L 285 (377)
T ss_pred HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH---HHHh-h
Confidence 444444444 356778999999888644444444 3478999999999999988877765433 2222211 1111 1
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehh-HhhhhhHHHHHHHHHHHcCCChhHHHHHHH
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLK-GFVGLSGAILTQLYHAFYGDNSKALILLIA 194 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~-a~~GLsa~i~s~i~~~~f~~~~~~fllfla 194 (492)
+.|.......+.+.+.+......+....+.+|++||.+.++.. ..+++++.+-.. ......++...++...+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~ 358 (377)
T PRK11102 286 GFWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGAL-LSLAPFTSAWPMVWSMA 358 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH-HHhccCCChHHHHHHHH
Confidence 2333322222222233344444455556678999999999864 446666554443 33333344444444444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.5e-05 Score=78.07 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
+++|.+-...++..-...++..-...+.+++|.+..+.+..++...+++.+|++.+|.+.||++|| ..+.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK------HILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH------HHHHHHHH
Confidence 456655554443333323444456677788998888888999999999999999999999999654 34555555
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceeh
Q 039263 420 FSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA 477 (492)
Q Consensus 420 l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la 477 (492)
+..++.++....+ ...+++.-.+.|++.|......+.++.|++..++.+...+....+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSG 135 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHH
Confidence 5666655544433 445677788899999999999999999999988877766665433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=74.65 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=66.8
Q ss_pred cccccccccHHH-HHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHH-HHHHHHHHHhcCCCC
Q 039263 44 ATYMFGLYSSDI-KTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFF-GYFMIWLAVTGRIPK 120 (492)
Q Consensus 44 t~Y~fS~ys~~L-~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~-Gy~~~~~~~~g~i~~ 120 (492)
..|....|.|+. ++.+|+++.|..++.....++..+ .+.+|++.||+|+|.+..++.++..+ ++...... .. .+
T Consensus 253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~-~~- 329 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-VA-AP- 329 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-Hc-CC-
Confidence 355566677775 455899988877665555555443 67889999999999988776554332 32211111 11 11
Q ss_pred chhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhH
Q 039263 121 PQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKG 165 (492)
Q Consensus 121 ~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a 165 (492)
+.+.+.....+.+.+.+...........+.+|+ +||.+.|+..+
T Consensus 330 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~ 374 (434)
T PRK15075 330 -SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYS 374 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHH
Confidence 122121111122222333333334456678886 69999998644
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0024 Score=67.41 Aligned_cols=135 Identities=21% Similarity=0.199 Sum_probs=78.0
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhH-HHhhcC-CCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCC
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQ-IGSSLG-YPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIP 409 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~-I~~slg-~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~ 409 (492)
+.++++|+|++...++..++. +...-..|+-.. .-+++| .+..... .+.+ .+.+.=+..=.+++|+.||++..
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~-~~~~~~~~~f~~~yl~~~gg~~~~~~g---~~~~-l~~~aEi~~f~~~~~~~~r~g~~ 273 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLI-GISHAAYYTFFSIYLQELGGYSGSTIG---ILWA-LGVVAEIPFFFFSGRFLKRFGIK 273 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccchhhHHH---HHHH-HHHHHHHHHHHHHHHHHHhcCHH
Confidence 447899999998766655443 333333444444 355666 3322222 2222 23345667777889999988653
Q ss_pred chHHHHHHHHHHHHHHHHHHhc-CCchhHHHH-----HHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 410 RPLLFTFVLLFSCVGHPFIAYG-IPNSLYAAS-----VIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 410 R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~~-----~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
+.+.++.+..++=..+++.. ++....... .+=|++||..+......+.+..-.+.-++--++
T Consensus 274 --~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l 341 (400)
T PF03825_consen 274 --WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGL 341 (400)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHH
Confidence 33444444444433344443 333322222 235999999999999999999975554544443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00023 Score=73.94 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHH
Q 039263 29 WFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGY 107 (492)
Q Consensus 29 w~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy 107 (492)
|..++...+.+.+.+..|. |.++.-++.|+++.+.+.+.....++.. ..++.|++.||+|+|..+.++.+...+++
T Consensus 208 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 208 WRFLLCVSLLQGSHAAYYG---FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHhHhHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 4455555666655544443 3355556789999888886444444444 46889999999999999988888888776
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehh
Q 039263 108 FMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLK 164 (492)
Q Consensus 108 ~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~ 164 (492)
.+.. ..++ .|.+....++.|.+.+..+.+......+.-|+++|.+.++..
T Consensus 285 ~~~~-----~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (382)
T PRK11128 285 GLMG-----STTA--LPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYS 334 (382)
T ss_pred HHHH-----hhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHH
Confidence 5432 1222 454555566667776776676666666766778888888654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00019 Score=72.94 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=76.2
Q ss_pred ccccccH-HHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHH-HHHHHHHHHHHHHHH--HHHhcCCCCc
Q 039263 47 MFGLYSS-DIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVL-AIGSIMNFFGYFMIW--LAVTGRIPKP 121 (492)
Q Consensus 47 ~fS~ys~-~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~-~iG~vl~~~Gy~~~~--~~~~g~i~~~ 121 (492)
.+..|.+ .+++.+|+++.+.+.+.....++.. ..+..|++.||+++|... ........++..... ....+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 310 (399)
T TIGR00893 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN-- 310 (399)
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch--
Confidence 3444444 4567789999888887555555554 478899999999988411 111111111111111 01112111
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcC
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYG 183 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~ 183 (492)
..+.......+++.+.+ .+........+.+|+ +||++.|+......+++.+-..+.....+
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~ 372 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence 12323333334444444 455666667788985 69999999888778877776666555444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0024 Score=69.07 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=102.2
Q ss_pred ccHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHh--hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCC
Q 039263 331 YTILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGS--SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKI 408 (492)
Q Consensus 331 ~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~--slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~ 408 (492)
.+++|.-|.++.+.+.+.+++-. -|+..+...+.+.. .+|+++.+.....-+..+....|-+++|++.||++.|.+
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~-dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~- 349 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYS-DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK- 349 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-
Confidence 46777777888877766665522 33344444444444 488887777777788899999999999999999976521
Q ss_pred CchHHHHHHHHHHHHHHHHHH--------hcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceeh---
Q 039263 409 PRPLLFTFVLLFSCVGHPFIA--------YGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA--- 477 (492)
Q Consensus 409 ~R~~~l~i~~~l~~~~~ll~~--------~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la--- 477 (492)
|+....+... ..+....+. ......+|+..+++|++.|+..+.--++.+|+==..+-++-||+..+.
T Consensus 350 -~~l~~~l~~~-~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 350 -RTLLISLILW-IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA 427 (477)
T ss_pred -HHHHHHHHHH-HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 3332222221 122221111 223447899999999999999999999999988777788888886443
Q ss_pred -hhHHHHHHh
Q 039263 478 -SPVGAYILN 486 (492)
Q Consensus 478 -~~~gs~l~~ 486 (492)
+.+|+.++.
T Consensus 428 ss~lGPll~g 437 (477)
T PF11700_consen 428 SSWLGPLLFG 437 (477)
T ss_pred HHHHHHHHHH
Confidence 455555544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00077 Score=70.52 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=81.6
Q ss_pred hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhc
Q 039263 369 SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFG 448 (492)
Q Consensus 369 slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~G 448 (492)
.+|.++.+.-..-...++....|-++.|++.||++.|. ..+....+++.++...+.......+++...++|+..|
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~-----vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKP-----VLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-----eehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 46776666655557778889999999999999997552 2222223333333333323345578899999999999
Q ss_pred chhhhHHHHHHHhhcCCCcccccccceeh----hhHHHHHHhh
Q 039263 449 AQWPLLFAIISEIFGLKYYSTLYNFGAVA----SPVGAYILNV 487 (492)
Q Consensus 449 ~~~~~~P~i~se~FG~k~~g~nyg~~~la----~~~gs~l~~~ 487 (492)
+..+.-.+..+++.=.++-++-+|+-.+. +..|+++++.
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v 399 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999986554 4555555544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=75.01 Aligned_cols=117 Identities=14% Similarity=0.237 Sum_probs=89.3
Q ss_pred chhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc-CCchhHHHH
Q 039263 362 NLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG-IPNSLYAAS 440 (492)
Q Consensus 362 n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~~ 440 (492)
...++.+++|.++.+.+...++..+...++.+.+|.++||++||+ .+.+..++..++.++.... +...+++.-
T Consensus 34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (405)
T TIGR00891 34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL------PMVTSIVLFSAGTLACGFAPGYITMFIAR 107 (405)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 345666778998888888999999999999999999999997653 4444555555555444333 233567777
Q ss_pred HHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHH
Q 039263 441 VIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484 (492)
Q Consensus 441 ~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l 484 (492)
.+.|++.|..+...++++.|++..++-++..++...+..+|..+
T Consensus 108 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 108 LVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999898888888766655555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=6e-05 Score=75.95 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=89.3
Q ss_pred HHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHH
Q 039263 365 QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAY-GIPNSLYAASVII 443 (492)
Q Consensus 365 ~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~-~~~~~l~~~~~li 443 (492)
.+.+++|.++.+.+...++..+.+.++.+.+|.++||++|| ..+.+..++..++.++..+ .+...+.+..++.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR------RVLIIGLLLFALGSLLLAFASNFWLLLIARFLL 95 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe------eeEeehhhhhhhHHHHhhhhhhHHHHhhhcccc
Confidence 56778888888888999999999999999999999999654 3566666666666433333 3333567888888
Q ss_pred HhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHH
Q 039263 444 GFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484 (492)
Q Consensus 444 G~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l 484 (492)
|++.|..+....+++.|++..|+.++..++...+..+|..+
T Consensus 96 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 136 (352)
T PF07690_consen 96 GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL 136 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhhhccccccchhhhhhhc
Confidence 99999999999999999999989999888876665555543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.5e-05 Score=77.52 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
+-+|..++.+++..+.-.+.-....++.++++.+..+.+...+...++..+|++.+|.++||++||+ .+....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~------~~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR------QLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHH
Confidence 4466666666654444323333467788888998888888889999999999999999999997664 4444555
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 420 FSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 420 l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
+..++.++....+ ...+++.-.+.|++.|..++...+.+.|.|..|+-+...++.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 136 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFT 136 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHH
Confidence 5555555544433 234556667889999999999999999999777766655443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.8e-05 Score=77.90 Aligned_cols=114 Identities=12% Similarity=0.001 Sum_probs=84.7
Q ss_pred ceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-C
Q 039263 355 GTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-P 433 (492)
Q Consensus 355 ~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~ 433 (492)
+..++...+.+|.++++.+....+..++++.++.++|.+.+|.++||++||+ .+....++..++.++..... .
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~------~l~~~~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP------VLITGALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH------HHHHHHHHHHHHHHHHHHcCCH
Confidence 3446666778899999998888888999999999999999999999996543 44444555555555444433 3
Q ss_pred chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 434 NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 434 ~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
..++++-++.|++.|........++.|.|..++-++..++.
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAII 145 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35667777888888766677778899999877776666653
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00014 Score=76.73 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=98.9
Q ss_pred cchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHH-hhhhccccccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFS-KDVGGNVGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~-~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
...|+.++.-.++++..=. -|+=.-=-+++++.+|++.++..++++. ..+.+..+++.|++.||+-|+.++.+|..+.
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 4555666666666665544 4555556688999999999999999544 4445567999999999999999888888877
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeee
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGL 162 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi 162 (492)
.+.-+. .++. ..+|++.++=.+.|+|-....+.+-.-...+||+ +|+++-|+
T Consensus 109 ~~Av~~-----~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i 161 (493)
T KOG1330|consen 109 TLAVFA-----SGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI 161 (493)
T ss_pred HHHHHH-----HHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence 666432 2332 3478888887888999988888888888999995 79988776
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0001 Score=75.41 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=78.5
Q ss_pred ccHHHHHhhCCChhhhhHH-HHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcC----CCCchhH
Q 039263 51 YSSDIKTSLGYDQSTLNLL-SFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGR----IPKPQVW 124 (492)
Q Consensus 51 ys~~L~~~~~~sq~~l~~i-s~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~----i~~~~~~ 124 (492)
+.+.++ ++|++.++...+ +..+.++.. ..+++|++.||+|+|..+.++.++..+++.++....... +.....|
T Consensus 232 ~~~~l~-~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T TIGR00901 232 TTLFLL-DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL 310 (356)
T ss_pred HHHHHH-HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 334444 489999998875 444444443 367889999999999998889888877766544321111 0101235
Q ss_pred HHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhh
Q 039263 125 QMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFV 167 (492)
Q Consensus 125 ~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~ 167 (492)
.+.....+.+.+.+..+.+...-..+.+|+ +||++-|+..+..
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 455455666777788888888888999985 6898888765544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.7e-05 Score=79.09 Aligned_cols=136 Identities=13% Similarity=0.162 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
.-++.+++.+++.......+-....++.+++|.+..+.+..++...+...++++.+|+++||+++|+ .+.+..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~~~~~~~ 96 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY------FMGIGLI 96 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch------hHHHHHH
Confidence 3444444444443322222333456777788988778888899999999999999999999996543 4455555
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 420 FSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 420 l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
+..++.++..... ...+++.-.+.|++.|..+....+++.|+|..|+.|+-.++...+..+|
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 159 (434)
T PRK11663 97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG 159 (434)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555443332 2234455566799999999999999999999888888777764443333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00038 Score=74.48 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=73.6
Q ss_pred ccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeecc--CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 039263 51 YSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEI--TPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMC 127 (492)
Q Consensus 51 ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~--~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~ 127 (492)
|-++..+++|+++.+.+.+.....++.. ..+++|++.|| +++|....++..+...+...+..... ++ .|.+.
T Consensus 263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~--~~~~~ 337 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA---GD--YTGLV 337 (455)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh---ch--HHHHH
Confidence 4455555679999998886444444444 46788999997 44554444444333333322222221 22 34444
Q ss_pred HHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHH
Q 039263 128 LYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQ 176 (492)
Q Consensus 128 ~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~ 176 (492)
.+.++.|.+.+..++.......+.+|+ +||++.|+......+++++-..
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~ 387 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPP 387 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccc
Confidence 555566666666666666667778875 6899999988887776665533
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=77.74 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhhccceeEEecchhHHHhh---cCCCCCccchhhhHHHhhhhhhhcccchhhHH-HhhhcCCCchHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQIGSS---LGYPARSTTTFVSLVSIWNYLGRVVAGFASEI-LLKKYKIPRPLLFTF 416 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~I~~s---lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~-~~~~~~~~R~~~l~i 416 (492)
.+|.++...++-..+--.+..++..+.++ +|+++.+++..++.+++...++++.+|+++|| ++|| ..+.+
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~------~~l~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK------KTMVL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH------HHHHH
Confidence 35666655555322222234455555443 78888888899999999999999999999999 6544 46666
Q ss_pred HHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCC---ccccccc----ceehhhHHHHH
Q 039263 417 VLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKY---YSTLYNF----GAVASPVGAYI 484 (492)
Q Consensus 417 ~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~---~g~nyg~----~~la~~~gs~l 484 (492)
..++..++++++.... ...++++..+.|++.|...+..+++++|.|..++ -+.-+++ ..++..+|..+
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l 160 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL 160 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH
Confidence 7777777776665443 2346667778899999999999999999997643 3333443 44455444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=75.31 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=79.4
Q ss_pred hhhhccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhc
Q 039263 73 KDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNF 152 (492)
Q Consensus 73 ~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~F 152 (492)
..++....+++|++.||+|+|.++.++.+...+....+++.+.... +.+.+.............|..+.+..+...+.|
T Consensus 296 ~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~-~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f 374 (462)
T PRK15034 296 PFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTG-SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIF 374 (462)
T ss_pred HHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHH
Confidence 3445556789999999999999999888877776655554443221 233443322122223445666677788888999
Q ss_pred CC----------------------CCCceeeehhHhhhhhHHHHHHHHHHHc---CCChhHHHHHHHH
Q 039263 153 PE----------------------SRGSVLGLLKGFVGLSGAILTQLYHAFY---GDNSKALILLIAW 195 (492)
Q Consensus 153 P~----------------------~RG~a~Gi~~a~~GLsa~i~s~i~~~~f---~~~~~~fllfla~ 195 (492)
|+ +-|.++|++.+.-++|+++...++.... ++-...|..|++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~ 442 (462)
T PRK15034 375 RQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIF 442 (462)
T ss_pred hhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHH
Confidence 85 4478899999999999999987765554 2333344444444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=5.5e-05 Score=76.53 Aligned_cols=134 Identities=11% Similarity=-0.010 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHH
Q 039263 342 MLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFS 421 (492)
Q Consensus 342 FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~ 421 (492)
||.++...++.....-+.......+.++.+.++.+.+...++..+...++.+.+|.++||++||+ .+.+..++.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~~~~~~~~~ 74 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK------VMIGADLIR 74 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH------HHHHHHHHH
Confidence 34444444433222222333344455667777777788889999999999999999999997653 343444443
Q ss_pred HHHHHHHH-hc-----CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 422 CVGHPFIA-YG-----IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 422 ~~~~ll~~-~~-----~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
.++.++.. .. ....+++...+.|++.|.......+++.|++..++.++.+++...+..+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 140 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLF 140 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHH
Confidence 33333221 11 23356677778899999999999999999999888888777765444443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=75.45 Aligned_cols=149 Identities=11% Similarity=0.151 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHH-HHhhhhccc-cccceeeeccCCcHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLS-FSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is-~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
+.|..++...+.++.....+. ...+-+.+++|+|.++.+.+. ..+.++... ++.+|++.||+|+|..+.+++++..
T Consensus 223 ~~~~~ll~~~l~~~~~~~~~~--~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~ 300 (491)
T PRK11010 223 NAWLILLLIVLYKLGDAFAMS--LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQG 300 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346655555544444333333 334556778999999998874 555555544 7889999999998887777777655
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHH
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHA 180 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~ 180 (492)
++...++.... .. .+.+.+.....+.+...+..+.+.....++..|+ .+|+..|+..+..++|+.+.+.+...
T Consensus 301 l~~l~~~~l~~--~~-~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~ 374 (491)
T PRK11010 301 VSNAGYWLLSI--TD-KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGW 374 (491)
T ss_pred HHHHHHHHHHh--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443332211 11 1233332222222222233334444455555665 46888888877777877766554433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00022 Score=75.24 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=84.9
Q ss_pred HHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHH
Q 039263 366 IGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG-IPNSLYAASVIIG 444 (492)
Q Consensus 366 I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~~~liG 444 (492)
+.++++.++.+.+...+++.++.+++.+..|+++||++||+ .+.+..++..++.++.... ....+++.-.+.|
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 107 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR------WIAGIMVLWGIASTATMFATGPESLYLLRILVG 107 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667888888888999999999999999999999996553 4555555656655554443 3446778888999
Q ss_pred hhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 445 FCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 445 ~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
++.|..+.....+++|+|-.|+-++..++...+..+|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 145 (412)
T TIGR02332 108 IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM 145 (412)
T ss_pred HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999988888887777655544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00015 Score=73.60 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=85.4
Q ss_pred hHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHH
Q 039263 364 GQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASVI 442 (492)
Q Consensus 364 ~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~l 442 (492)
..+.+++|.++.+.+...++..+...++.+..|.++||++||+ .+.+..++..++.++..... ...+++.-.+
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV------FLPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4566778988888889999999999999999999999996553 44455555555555543333 3355677778
Q ss_pred HHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 443 IGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 443 iG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
.|++.|..+....++++|++..|+-++-.++...+..+|.
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 132 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGG 132 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHH
Confidence 8999999999999999999998887777776554444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=78.39 Aligned_cols=131 Identities=11% Similarity=0.148 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLF 420 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l 420 (492)
.++.+++.+++..-...+......++.++++.+..+.+..++.+.+...++.+..|.++||++||+ .+.+..++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRL------AMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHH
Confidence 455555555443333223333456777788888888888899999999999999999999996543 44455555
Q ss_pred HHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceeh
Q 039263 421 SCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA 477 (492)
Q Consensus 421 ~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la 477 (492)
..++.++..... ...+++...+.|++.|+.+.....++.|.|-.|+-+.-.++...+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 152 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG 152 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 555554443332 335677788889999999999999999999877766655554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00011 Score=76.87 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHH
Q 039263 339 SIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVL 418 (492)
Q Consensus 339 t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~ 418 (492)
+++||.+++..++..-..-++...+..+.++++.++...+..++.+.+...+.-+.+|.+.||++||+ .+.+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~------vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR------VMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch------hhHHHH
Confidence 56899999887775543334455555667778877666778889999999999999999999997654 333333
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccce
Q 039263 419 LFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 419 ~l~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
++..++.++..... ..++.-++.|++.|......-+++.|++..|+.++..+++.
T Consensus 76 ~~~~~~~~~~~~~~--~~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~ 130 (393)
T PRK11195 76 GIKLLGCLLMLFGI--HPLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWME 130 (393)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 33333333222211 12455567899999999999999999999998888877753
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00023 Score=73.91 Aligned_cols=134 Identities=13% Similarity=0.018 Sum_probs=88.7
Q ss_pred hcchhHHHHHHHHHhhccceeEEecchh-HHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHH
Q 039263 337 LFSIDMLIIFIATTCGVGGTLTAIDNLG-QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFT 415 (492)
Q Consensus 337 l~t~~FWllf~~~~~~~g~Gl~~i~n~~-~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~ 415 (492)
..+..+|.+++..++..-.--+...-+. ++.+++|.+..+.+..++...+...++++.+|.++||++||+ .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~------~l~ 85 (392)
T PRK12382 12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKR------SAL 85 (392)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchH------HHH
Confidence 5566777776655443222112222222 345678998888899999999999999999999999997653 333
Q ss_pred HHHHHHHHHHH---HHHhc------CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 416 FVLLFSCVGHP---FIAYG------IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 416 i~~~l~~~~~l---l~~~~------~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
+..+...++.+ +.... ....+++.-.+.|++.+.......+.+.|.+..|+.++-.++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~ 155 (392)
T PRK12382 86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGM 155 (392)
T ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHH
Confidence 33333222221 11111 112456677788999998888888889999999999887777544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.003 Score=69.07 Aligned_cols=93 Identities=10% Similarity=0.155 Sum_probs=67.1
Q ss_pred CChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHH-HHhcCCCCchhHHHHHHHHHhhcccc
Q 039263 61 YDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWL-AVTGRIPKPQVWQMCLYICIGANSQS 138 (492)
Q Consensus 61 ~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~-~~~g~i~~~~~~~l~~~~~l~g~g~~ 138 (492)
=|...++++.++..+-. .+++++|.+.||+.+|.+++..-++..+....+.. ...|.. +.|+++.+.++.|.+..
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~---~~~~Ll~~~fl~g~~~a 118 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLL---SPWLLLILTFLLGIGSA 118 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHHHH
Confidence 34556666666655555 36999999999999999998888777665544433 334443 36888888888898888
Q ss_pred chhhhhhhhhhhhcCCCC
Q 039263 139 FANTGALVTCVKNFPESR 156 (492)
Q Consensus 139 ~~~~a~l~t~~k~FP~~R 156 (492)
+.+.+--...-+--|+++
T Consensus 119 ~~~PA~~A~ip~lV~~~~ 136 (524)
T PF05977_consen 119 FFNPAWQAIIPELVPKED 136 (524)
T ss_pred HHHHHHHHHHHHhccHhh
Confidence 888877777777788654
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00031 Score=76.23 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=82.9
Q ss_pred HHHhcch-hHHHHHHHHHhhccceeEEecchhHH-HhhcCCCCCccchhhhHHHhhhhhhhcccchhhHH-HhhhcCCCc
Q 039263 334 LQALFSI-DMLIIFIATTCGVGGTLTAIDNLGQI-GSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEI-LLKKYKIPR 410 (492)
Q Consensus 334 ~~~l~t~-~FWllf~~~~~~~g~Gl~~i~n~~~I-~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~-~~~~~~~~R 410 (492)
.+.++++ .+|.++...++...+--.+...+... .+.+|.++.++...++.+........+.+|+++|| ++||
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r----- 88 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK----- 88 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----
Confidence 4556777 49998887766544322222333333 35688877666666666665555556789999999 5654
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC-C-chhHHHHHHHHhhhcchhhhHHHHHHHhhcCC
Q 039263 411 PLLFTFVLLFSCVGHPFIAYGI-P-NSLYAASVIIGFCFGAQWPLLFAIISEIFGLK 465 (492)
Q Consensus 411 ~~~l~i~~~l~~~~~ll~~~~~-~-~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k 465 (492)
..+.+..++..++.+++.... . ..++++-++.|++.|......+++++|.|..+
T Consensus 89 -~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~ 144 (500)
T PRK09584 89 -RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKD 144 (500)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCC
Confidence 355556666666665554432 2 23456667889999999999999999999643
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=70.37 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=72.0
Q ss_pred ccccccccHH-HHHhhCCChhhhhHHHHHhhhh-ccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 039263 45 TYMFGLYSSD-IKTSLGYDQSTLNLLSFSKDVG-GNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQ 122 (492)
Q Consensus 45 ~Y~fS~ys~~-L~~~~~~sq~~l~~is~~~~vg-~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~ 122 (492)
.|....|.+. +++.+|++.++...+.....+. ....+..|++.||+|+|.+..++.++..++...+...... . .+
T Consensus 266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 342 (438)
T PRK09952 266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA--Q-SI 342 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--C-Ch
Confidence 3444444444 4667899887655443322222 2335678999999999998887777655544333322221 1 12
Q ss_pred hHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHh-hhhhHHHHHHHH
Q 039263 123 VWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGF-VGLSGAILTQLY 178 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~-~GLsa~i~s~i~ 178 (492)
.+.+....++.+.+.+...........+.||. +|+++.|+.-.. ..+++.+-..+.
T Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~ 400 (438)
T PRK09952 343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIA 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333233444544444444444455688986 688888885432 224444443333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00028 Score=74.82 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=78.6
Q ss_pred HHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc----C-CchhHHH
Q 039263 365 QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG----I-PNSLYAA 439 (492)
Q Consensus 365 ~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~----~-~~~l~~~ 439 (492)
+..++.|.++.+.+...++..+...++.+.+|+++||++||+ .+.+..++..++.+..... . ...+++.
T Consensus 51 p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (438)
T TIGR00712 51 PYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV------FLPAGLILSAAVMLLMGFVPWATSSIAIMFVL 124 (438)
T ss_pred HHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce------ehHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 344456888888888899999999999999999999997653 3333444444444333221 1 1134455
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 440 SVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 440 ~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
-.+.|++.|..+......+.|+|..|+-|+..++...+..+|
T Consensus 125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g 166 (438)
T TIGR00712 125 LFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIG 166 (438)
T ss_pred HHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhH
Confidence 667799999999989999999999888888877755444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00028 Score=73.91 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=88.1
Q ss_pred chhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHH
Q 039263 362 NLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAAS 440 (492)
Q Consensus 362 n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~ 440 (492)
....|.+++|.++.+.+...++..+...+|.+.+|.++||++|| ..+.+..++..++.++..... ...+++.-
T Consensus 40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 113 (426)
T PRK12307 40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK------PLMMWSIVAYSVGTGLSGLASGVIMLTLSR 113 (426)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556677888888888888999999999999999999999543 455566666666665443332 33567778
Q ss_pred HHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHH
Q 039263 441 VIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAY 483 (492)
Q Consensus 441 ~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~ 483 (492)
.+.|++.|..+.....++.|.|..|+-++..++...+..+|..
T Consensus 114 ~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 156 (426)
T PRK12307 114 FIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI 156 (426)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH
Confidence 8899999999999999999999988888877775555444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00032 Score=72.91 Aligned_cols=130 Identities=10% Similarity=0.099 Sum_probs=91.8
Q ss_pred HHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHH
Q 039263 343 LIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSC 422 (492)
Q Consensus 343 Wllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~ 422 (492)
|++....+++.....+++....++.++++.++.+.+...+...+...++.+.+|.++||++||+ .+.+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~------~~~~~~~~~~ 84 (394)
T PRK11652 11 FMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP------VILVGMSIFI 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH------HHHHHHHHHH
Confidence 3444444444444445556678888999998888888899999999999999999999996543 4444455555
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehh
Q 039263 423 VGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVAS 478 (492)
Q Consensus 423 ~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~ 478 (492)
++.+.....+ ...+++...+.|++.|........+..|.+..++.+...++..++.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (394)
T PRK11652 85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGI 141 (394)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5554433333 3356677778899998888888888999988777777666654433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=66.03 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHhhccceeEEecchhH--HHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH
Q 039263 339 SIDMLIIFIATTCGVGGTLTAIDNLGQ--IGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF 416 (492)
Q Consensus 339 t~~FWllf~~~~~~~g~Gl~~i~n~~~--I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i 416 (492)
.|.||++++++++=-=+=--.| -++| ..+..|+++.++...-|.+-.-++.---+.|.++|+.+++ .|+...
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi-~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~~ 336 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFI-TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-----LWWVAS 336 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-----ehhHHH
Confidence 4679998887765210000000 1122 2234688877776666666666677778899999999753 245556
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHhhhcch----hhhHHHHHHHhhcCCCcccccccce
Q 039263 417 VLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQ----WPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 417 ~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~G~~----~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
+.+...++|..+.+. -..=|.+..+.|++|-.+ |...|.++.| +..|+-||+++
T Consensus 337 a~~~tl~~H~~l~Ft-~lsPy~~m~~lGLsysllAcslWP~va~~vpE----~qLGTaygf~q 394 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFT-FLSPYTSMTFLGLSYSLLACSLWPCVASLVPE----EQLGTAYGFIQ 394 (459)
T ss_pred HHHHHHHHhhhHHhh-hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH----HHhcchHHHHH
Confidence 677788888665442 223477888889998764 5566666664 56777777753
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00018 Score=75.38 Aligned_cols=129 Identities=7% Similarity=0.007 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhhccceeEEecchhH-HHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQ-IGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVL 418 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~-I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~ 418 (492)
+++|++.+..++....--++..-+.. +.+.+|.++.+.+..+++..+....+++.+|.++||++||+ .+.+..
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~------~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR------YMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------hHHHHH
Confidence 45888877666643332233333443 34568998888899999999999999999999999997653 333334
Q ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 419 LFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 419 ~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
++..++.+++.+.+ ...+.+...+.|.+++......+..++|.++.++.++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLN 137 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence 44444444433332 223444455667777877888899999999877776665553
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00093 Score=69.59 Aligned_cols=136 Identities=10% Similarity=0.061 Sum_probs=74.4
Q ss_pred CCChhhhhHHHHHhhhh-ccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcccc
Q 039263 60 GYDQSTLNLLSFSKDVG-GNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQS 138 (492)
Q Consensus 60 ~~sq~~l~~is~~~~vg-~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~ 138 (492)
+.+..+.+.+.....+. ....+..|++.||+|+|....+|.++..+++.+... .++ .|.+.....+.|.+..
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~-----~~~--~~~~~~~~~l~g~~~~ 322 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF-----ATT--ALEVVILKMLHAFEVP 322 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh-----cCC--hHHHHHHHHHHHHHHH
Confidence 55555555543333233 334678899999999999999999988888764331 222 3434444555565554
Q ss_pred chhhhhhhhhhhhcCCC-CCceeee-hhHhhhhhHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHH
Q 039263 139 FANTGALVTCVKNFPES-RGSVLGL-LKGFVGLSGAILTQLYHAFYGD-NSKALILLIAWLPAAISF 202 (492)
Q Consensus 139 ~~~~a~l~t~~k~FP~~-RG~a~Gi-~~a~~GLsa~i~s~i~~~~f~~-~~~~fllfla~~~~~v~~ 202 (492)
.....+.....+.+|++ |+++.+. .....++|+.+...+.....+. +.+..+++.++...+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 323 FLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 44344444445555543 3443333 2344566666665554444432 334444444444443333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00049 Score=70.44 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=83.3
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASV 441 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~ 441 (492)
...+.+.+|.+..+.+...++..+...++.+..|.++||++||+ .+.+..++..++.++..... ...+++...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (398)
T TIGR00895 40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR------VLLWSILLFSVFTLLCALATNVTQLLILRF 113 (398)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 45566677887777777888999999999999999999996543 44444555555554443333 335667777
Q ss_pred HHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 442 IIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
+.|++.|..+...+++++|.+..++-++-.++...+..+|
T Consensus 114 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 153 (398)
T TIGR00895 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153 (398)
T ss_pred HHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence 8899999999999999999998888887777755444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00034 Score=75.69 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=82.3
Q ss_pred hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHH-hhhcCCCchHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHH
Q 039263 368 SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEIL-LKKYKIPRPLLFTFVLLFSCVGHPFIAYGI--PNSLYAASVIIG 444 (492)
Q Consensus 368 ~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~-~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~--~~~l~~~~~liG 444 (492)
+.+|+++.++....+.+.+...++.+..|+++||+ +||+ .+.+..+++.++++++.... ...++++..++.
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr------~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~ 111 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM------AVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIV 111 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 34788877788888999999999999999999998 6553 45566667777766554322 123555666677
Q ss_pred hhhcchhhhHHHHHHHhhcCCC------cccccccceehhhHHHHHHhh
Q 039263 445 FCFGAQWPLLFAIISEIFGLKY------YSTLYNFGAVASPVGAYILNV 487 (492)
Q Consensus 445 ~~~G~~~~~~P~i~se~FG~k~------~g~nyg~~~la~~~gs~l~~~ 487 (492)
++.|...+..+++++|.|..++ ++..|....++..+++++...
T Consensus 112 iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~ 160 (493)
T PRK15462 112 CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY 160 (493)
T ss_pred HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence 7888888888999999997542 666676666666666655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00052 Score=73.15 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=78.5
Q ss_pred HHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-----CchhHHH
Q 039263 365 QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-----PNSLYAA 439 (492)
Q Consensus 365 ~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-----~~~l~~~ 439 (492)
.+.+. |.++.+.+..++...+...++.+.+|+++||+++|+ .+.+..++..++.+++.... ...+++.
T Consensus 54 ~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~------~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 126 (452)
T PRK11273 54 YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 126 (452)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch------hHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 34444 888788888899999999999999999999996653 45455555555554443321 1134555
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 440 SVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 440 ~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
..+.|++.|..+.....++.|.|-.|+-++..++...+..+|
T Consensus 127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 168 (452)
T PRK11273 127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 168 (452)
T ss_pred HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Confidence 667899999888877888999998888888777754444443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=68.90 Aligned_cols=122 Identities=12% Similarity=0.219 Sum_probs=73.2
Q ss_pred ccHHHHHhhCCChhhhhHHH-HHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 039263 51 YSSDIKTSLGYDQSTLNLLS-FSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCL 128 (492)
Q Consensus 51 ys~~L~~~~~~sq~~l~~is-~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~ 128 (492)
..+.+.+++|+++++...+. ..+.++... ++.+|++.||+|+|..+.++.++..+....++.. ....+ +.|.+..
T Consensus 232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~--~~~~~-~~~~~~~ 308 (402)
T PRK11902 232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVL--AVTPK-HLWTMAL 308 (402)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HhcCC-cHHHHHH
Confidence 34557778999999998873 434343333 6889999999999888777776655554333221 11111 1233322
Q ss_pred H----HHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHH
Q 039263 129 Y----ICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 129 ~----~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
. .+..|.+.+..++.....+.+.+|.+. -++..+..++|+.+.+.+.
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 359 (402)
T PRK11902 309 AIGIENLCGGMGTAAFVALLMALCNRSFSATQ---YALLSALASVGRVYVGPTS 359 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH---HHHHHHHHHHHHHHHHHHH
Confidence 2 234566666667777777888888532 2444445566666555543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=77.44 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=81.6
Q ss_pred ccccHHHHHhhCCChh-hhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 039263 49 GLYSSDIKTSLGYDQS-TLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQM 126 (492)
Q Consensus 49 S~ys~~L~~~~~~sq~-~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l 126 (492)
..+...+++.+|+++. +.+++.....++..+ +++.|++.||++++..+.+|.++..++..++... . +.+.+
T Consensus 253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~ 325 (1146)
T PRK08633 253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--P-----SLASV 325 (1146)
T ss_pred HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--h-----hHHHH
Confidence 3455667788999998 888876666666654 7899999999999988888888777765544322 1 23444
Q ss_pred HHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHH
Q 039263 127 CLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 127 ~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~ 174 (492)
.+..++.|.+.+...........+.+|+ +||.+.|+......+++.+.
T Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~ 374 (1146)
T PRK08633 326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLF 374 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHH
Confidence 4445555666666665555556678875 69999998765555555433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=68.24 Aligned_cols=130 Identities=9% Similarity=-0.007 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCcc-----chhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHH
Q 039263 339 SIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARST-----TTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLL 413 (492)
Q Consensus 339 t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~-----~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~ 413 (492)
+++++.+|+..++..-+.-++..-+..+.+++|.+..+. +...++..+...++.+.+|.++||++|| ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~ 86 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK------IM 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH------HH
Confidence 446777776655533322234445677777888765443 4566888889999999999999998654 34
Q ss_pred HHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccce
Q 039263 414 FTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 414 l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
+.+..++..++.++..... ...+++...+.|++. +......+.+.|.+..++.++..++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLS 148 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHH
Confidence 4445555555554443322 335666777778874 456677778889998777776655543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0027 Score=75.55 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHH
Q 039263 29 WFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGY 107 (492)
Q Consensus 29 w~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy 107 (492)
|..+++..+.+++.+.... .....+++.+|.+..+.+.+.....+|... ++..|++.|+++++..+.+|.++..++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 305 (1140)
T PRK06814 228 WLAILGISWFWLVGAVVLS--QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFG 305 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHH
Confidence 3344444444444433322 234446677899999888876666666655 7888999988876666666666555544
Q ss_pred HHHHHHHh-------------cCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHH
Q 039263 108 FMIWLAVT-------------GRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 108 ~~~~~~~~-------------g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i 173 (492)
..+..... ......+.|.+.+..++.|.+.++..........+..|+ +||.+.|+......++..+
T Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i 385 (1140)
T PRK06814 306 LDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVA 385 (1140)
T ss_pred HHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHH
Confidence 32222100 011112345555555666777777766666667788885 7999999876555555554
Q ss_pred HHHHHHHH
Q 039263 174 LTQLYHAF 181 (492)
Q Consensus 174 ~s~i~~~~ 181 (492)
-+.+...+
T Consensus 386 g~~~~g~l 393 (1140)
T PRK06814 386 GTIILALL 393 (1140)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=70.89 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=76.1
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASV 441 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~ 441 (492)
...+.+++|.+..+.+...+.+.++..+|.+.+|+++||+++| ..+.+..++..++.++..... ...+++.-.
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~ 132 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR------YGSAFLLMLTAPAVFCMSLVSSATGFIAVRF 132 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3456667888777777777888888999999999999999654 334444455555554443333 334556666
Q ss_pred HHHhhhcchhhhHHHHHHHhhcCCCcccccccce----ehhhHHHHH
Q 039263 442 IIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA----VASPVGAYI 484 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~----la~~~gs~l 484 (492)
+.|++.|... .....++|+|-.|+-|.-.|+.. ++..++..+
T Consensus 133 l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~ 178 (476)
T PLN00028 133 FIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL 178 (476)
T ss_pred HHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence 7788877643 34557899998777777666643 444444443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.015 Score=61.59 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=73.9
Q ss_pred CChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccc
Q 039263 61 YDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSF 139 (492)
Q Consensus 61 ~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~ 139 (492)
++..-.+++.-+.++|..+ -++-|++-||+|+|.+...-.+..-++-.+..+......+..-++-+++|=.+.|+|+|.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 4444455566777788877 478899999999999876666665555432222222111211234477787888999988
Q ss_pred hhhhhhhhhhhhcC--CCCCceeeehhHhhhh---hHHHHHHHHHHHc
Q 039263 140 ANTGALVTCVKNFP--ESRGSVLGLLKGFVGL---SGAILTQLYHAFY 182 (492)
Q Consensus 140 ~~~a~l~t~~k~FP--~~RG~a~Gi~~a~~GL---sa~i~s~i~~~~f 182 (492)
=|.-+ .+.+..+- ++||.-.+.+.++-|+ .|.+.+.|....|
T Consensus 161 DYPlS-AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~f 207 (538)
T KOG0252|consen 161 DYPLS-ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIF 207 (538)
T ss_pred CCcch-HHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHH
Confidence 77632 33455564 4689999987655543 3444444444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00069 Score=70.32 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=83.0
Q ss_pred EEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-Cchh
Q 039263 358 TAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSL 436 (492)
Q Consensus 358 ~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l 436 (492)
++.....++.++++.++.+.+...+++.+...++.+..|+++||++|| ..+.+..++..++.++....+ ...+
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~l~~~~~~~~i~~~~~~~~~~~~~~ 94 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK------PVAIPGAALFIIASLLCSLAETSSLF 94 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh------HHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 444567788888998877778888999999999999999999999654 244445555555554443333 2345
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 437 YAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 437 ~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
++.-.+.|++.|..+....+++.|.+..|+-++..++.
T Consensus 95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 132 (392)
T PRK10473 95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL 132 (392)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 66667889999999999999999999888876655553
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.001 Score=68.00 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=79.2
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVI 442 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~l 442 (492)
+.++.++++.+..+.+...++..+...++.+..|.++||++||+ .+.+..+...++.+.........+++...+
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER------SVAAGLLLIAAGILIRSAPGTALLFAGTAL 96 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH------HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34577788988888889999999999999999999999997653 343444444444443322333455677778
Q ss_pred HHhhhcchhhhHHHHHHHhhcCCCcccccccceeh
Q 039263 443 IGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA 477 (492)
Q Consensus 443 iG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la 477 (492)
.|++.|......|.++.|.| +++-++..++...+
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMA 130 (355)
T ss_pred HHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHH
Confidence 89999988889999999999 47777666665443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=68.81 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=87.0
Q ss_pred Cccccccccc-HHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 039263 43 GATYMFGLYS-SDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPK 120 (492)
Q Consensus 43 Gt~Y~fS~ys-~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~ 120 (492)
|.-=.||.|= .-++++|+++..+...+ ......+...=+.+|.+.||+|++.++++--+.+.++-.......++.-..
T Consensus 232 G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~ 311 (417)
T COG2223 232 GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHG 311 (417)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccC
Confidence 3333444444 44677999999988776 455555666678999999999988887766665555544433332222111
Q ss_pred chhHHH-H---HHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHHHHHc
Q 039263 121 PQVWQM-C---LYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 121 ~~~~~l-~---~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f 182 (492)
.+.+.. . ...+..|.| +.++-+-.-+-||++-|.+.|+.-+.-|+|++.........+
T Consensus 312 ~~~~~~~~~~l~l~~~~G~G----nGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~ 373 (417)
T COG2223 312 GSFVVFVAVFLALFVFAGLG----NGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSL 373 (417)
T ss_pred cchHHHHHHHHHHHHHhccC----cchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHH
Confidence 222221 1 122333444 445667788899999999999999999999977755444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00088 Score=70.30 Aligned_cols=128 Identities=12% Similarity=0.105 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHhhccceeEEecchh-HHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLG-QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVL 418 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~-~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~ 418 (492)
++.++++..++...+...+ ..=+. .+.+.+|.+....+...++..+.....++.+|.++||++|| ..+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k------~~l~~~~ 83 (400)
T PRK11646 11 GKYFLLIDNMLVVLGFFVV-FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK------PMIVTGM 83 (400)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch------HHHHHHH
Confidence 3444444444444443322 22222 34466788877788888888899999999999999999654 3555566
Q ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 419 LFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 419 ~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
++..++.+.....+ ...+++..++.|++.|.......+++.|.+..++.++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 140 (400)
T PRK11646 84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLL 140 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666665544333 334667777789988888888888999999988888888874
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0026 Score=66.52 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhhccceeEE--ec-chhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTA--ID-NLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFV 417 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~--i~-n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~ 417 (492)
.=|++...++.+.-...++ ++ -.-+|.++++.++.+.+..+++..++..++-+..|.++||++|| ..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r------~~l~~~ 80 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER------RSVAIS 80 (393)
T ss_pred hHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch------HHHHHH
Confidence 3466666666655554333 22 24466667888888888999999999999999999999999654 466777
Q ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccce
Q 039263 418 LLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 418 ~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
.++..++.++..+.+ ...+++.-++.|++.|......+.++.|.|. ++.+.-.+...
T Consensus 81 ~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ 138 (393)
T PRK09705 81 LLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWS 138 (393)
T ss_pred HHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHH
Confidence 777777777665443 4467788888899999999999999999995 77777666653
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=68.12 Aligned_cols=121 Identities=15% Similarity=0.009 Sum_probs=81.0
Q ss_pred HHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 039263 348 ATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPF 427 (492)
Q Consensus 348 ~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll 427 (492)
.+....+.+++...-.-++.+++|.++.+.+...++..+...++.+.+|.++||++||+ .+.+..++..++...
T Consensus 24 ~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~------~l~~~~~~~~~~~~~ 97 (399)
T PRK05122 24 TFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK------AVVFGLCGCALSGLL 97 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc------hHHHHHHHHHHHHHH
Confidence 33334444433222223456778888888888999999999999999999999997654 333333333333221
Q ss_pred H---HhcC------CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccc
Q 039263 428 I---AYGI------PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 474 (492)
Q Consensus 428 ~---~~~~------~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~ 474 (492)
. .... ...+++.-.+.|++.|.......+.+.|.+..|+.++.-++.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 153 (399)
T PRK05122 98 YLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWN 153 (399)
T ss_pred HHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhh
Confidence 1 1111 113566677889999999888888899999888888776654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00092 Score=73.82 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhccceeEEecch--hHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 342 MLIIFIATTCGVGGTLTAIDNL--GQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 342 FWllf~~~~~~~g~Gl~~i~n~--~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
||++...+.+...+|.++.-|+ .++.+++|+++.+.+...++ ...-+..-+.+|+++||+ +|...+.+..+
T Consensus 27 w~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~------G~R~vllig~l 99 (591)
T PTZ00207 27 FALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYL------GPRPIFVLSMT 99 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHh------CcHHHHHHHHH
Confidence 4455555555555666666554 66777888876665554444 222334556789999999 44556777777
Q ss_pred HHHHHHHHHHhc-------CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHHHhh
Q 039263 420 FSCVGHPFIAYG-------IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYILNV 487 (492)
Q Consensus 420 l~~~~~ll~~~~-------~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l~~~ 487 (492)
+..++.++.... +...+++.-++.|++-|..+......+.++| +++-|.--|+...+..+|+.++..
T Consensus 100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gLGsaI~~~ 173 (591)
T PTZ00207 100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGLGSAILGS 173 (591)
T ss_pred HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 778877665443 2224566667788888888888888999999 688898888887777777765443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0028 Score=64.41 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=79.9
Q ss_pred cHHHHH--hhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 039263 52 SSDIKT--SLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCL 128 (492)
Q Consensus 52 s~~L~~--~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~ 128 (492)
...+++ ++|++.++.+......-.+... .+.++++.||+|+|..+.++.++..++..+.+.. .+ .+....
T Consensus 164 ~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-~~------~~~~~~ 236 (310)
T TIGR01272 164 VNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-HG------YVAMWF 236 (310)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CC------HHHHHH
Confidence 455554 3799988877763333333333 6788999999999998888888887776444321 11 111222
Q ss_pred HHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHhhhhhHHHHHHHH
Q 039263 129 YICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 129 ~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
..+.|.+.+..|........+.+|++.|.++++. .+..+|+++...+.
T Consensus 237 -~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~ 284 (310)
T TIGR01272 237 -VLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQ 284 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHH
Confidence 2245678888999999999999999989998886 44446666664433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0018 Score=69.09 Aligned_cols=137 Identities=10% Similarity=-0.017 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLF 420 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l 420 (492)
.|+++++.++.-...-.+...-..++.++++.++.+.+...+.+.++..++-+..|.+.||+++| ..+.+..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r------~~l~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHH
Confidence 56666655544322222222235566667899888888999999999999999999999999654 456666666
Q ss_pred HHHHHHHH---HhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccc-----ccccceehhhHHHHH
Q 039263 421 SCVGHPFI---AYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYST-----LYNFGAVASPVGAYI 484 (492)
Q Consensus 421 ~~~~~ll~---~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~-----nyg~~~la~~~gs~l 484 (492)
..++.+++ ...+ ...+.+.-.+.|++.|.......+++.|.. +++.+. ......+++.+|..+
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766543 2222 234566677889999999999999999864 444443 223334555555444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0011 Score=71.42 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=86.0
Q ss_pred hhHHHhhcCCC---CCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHH
Q 039263 363 LGQIGSSLGYP---ARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYA 438 (492)
Q Consensus 363 ~~~I~~slg~~---~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~ 438 (492)
..+|.++.+.+ +.+.+...+++.++..+|.+.+|.++||++|| ..+.+..++..++.++..+.+ ...+.+
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 185 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRK------KVLLLSTLVTAVSGVLTAFSPNYTVFLV 185 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccch------HHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 34566667765 56667888999999999999999999999654 345555555555555444433 335667
Q ss_pred HHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHH
Q 039263 439 ASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484 (492)
Q Consensus 439 ~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l 484 (492)
.-.+.|++.|+.+.....+++|++..|+-+..-++...+..+|..+
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~ 231 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL 231 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999888887766665555555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.11 Score=54.47 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=79.9
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEecchhHHHh------hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhh
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGS------SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKK 405 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~------slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~ 405 (492)
.++|...+++--.++...+.+.-+ .++-++.- -+|++..+++.+-++.+.+-.+|-+..|++.. |+
T Consensus 200 a~~~~~~~~~a~~f~~fl~l~t~a-----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~ 271 (403)
T PF03209_consen 200 AWRQVWASPQARRFFVFLFLGTLA-----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR 271 (403)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHH-----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 455666777666555544443221 12222221 24777777777888889998888888887654 33
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHH-h-cCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 406 YKIPRPLLFTFVLLFSCVGHPFIA-Y-GIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 406 ~~~~R~~~l~i~~~l~~~~~ll~~-~-~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
.+..|...+-+.....+...+.++ . .....|..+..++|++.|..-.-.-+..-|+=...+-|.-=|.
T Consensus 272 ~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~ 341 (403)
T PF03209_consen 272 LGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGA 341 (403)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHH
Confidence 333444433332222222222222 2 2344677888899999999877777777777777776654444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0028 Score=68.74 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=77.9
Q ss_pred HhhcCCCCCccchhhhHHHhhhhhhhcccchhhHH-HhhhcCCCchHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHH
Q 039263 367 GSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEI-LLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI--PNSLYAASVII 443 (492)
Q Consensus 367 ~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~-~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~--~~~l~~~~~li 443 (492)
.+.+|.++.+++..++.+.......-+..|+++|| ++|| ..+.+..++..+++++..... ...++++-++.
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r------~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK------RTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH------HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 44688887777777888888888888899999998 8654 466667777777776554433 22355777888
Q ss_pred HhhhcchhhhHHHHHHHhhcCCC--cccccccceehhhHH
Q 039263 444 GFCFGAQWPLLFAIISEIFGLKY--YSTLYNFGAVASPVG 481 (492)
Q Consensus 444 G~~~G~~~~~~P~i~se~FG~k~--~g~nyg~~~la~~~g 481 (492)
|++.|...+..+++++|.|-.++ .+.-|++..++.-+|
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig 155 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIG 155 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHH
Confidence 99999999999999999996553 233444444333333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0052 Score=64.50 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=60.2
Q ss_pred hhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchh
Q 039263 63 QSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFAN 141 (492)
Q Consensus 63 q~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~ 141 (492)
..+.+.+.....++..+ .++.|++.||+|+|.+..+|.++..+++.+++.. . . +.+.+....++.|.+.+..+
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~--~--~~~~~~~~~~~~g~~~~~~~ 329 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--G--S--NLPLILVLIILAGFGQNFVT 329 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--c--h--hHHHHHHHHHHHHHHHHHHH
Confidence 34444443333444443 6788999999999999999998888887665532 1 1 13334444455565555544
Q ss_pred hhhhhhhhhh-----c---CCCCCceeeehhHhhhhhHHH
Q 039263 142 TGALVTCVKN-----F---PESRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 142 ~a~l~t~~k~-----F---P~~RG~a~Gi~~a~~GLsa~i 173 (492)
........+. + ++++|.+.|+...+..++..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~l 369 (437)
T TIGR00792 330 GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQAL 369 (437)
T ss_pred HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHH
Confidence 3322222222 1 345788888764444343333
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0021 Score=55.11 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=67.1
Q ss_pred hhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHH
Q 039263 381 VSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIIS 459 (492)
Q Consensus 381 Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~s 459 (492)
.+..++.+.++++..|++.||++||+ .+.+...+..++.++..... ...+.+...+.|++.|.........+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKP------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45667889999999999999986543 44444444555544433322 234566677889999999999999999
Q ss_pred HhhcCCCcccccccceehhhHH
Q 039263 460 EIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 460 e~FG~k~~g~nyg~~~la~~~g 481 (492)
|.+..++.++..+.......+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g 99 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALG 99 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHH
Confidence 9999888887777755443333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.027 Score=59.53 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=41.8
Q ss_pred ccccccHHHHHhhCCChhhhhHHHHHhhhhc-cccccceeeeccCCcHHH--HHHHHHHHHHHHHHHH
Q 039263 47 MFGLYSSDIKTSLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVV--LAIGSIMNFFGYFMIW 111 (492)
Q Consensus 47 ~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~--~~iG~vl~~~Gy~~~~ 111 (492)
.|+.|+.=|+++.|+|.+|++++-.+..+.. ...+..|.+.||+|.|.- ..+..++...|=+.+|
T Consensus 26 ~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~ 93 (412)
T PF01306_consen 26 FLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIY 93 (412)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888889999999999744444444 468899999999995553 3444444444543333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0027 Score=68.70 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=74.9
Q ss_pred ccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCC-------chhHHHHHHHHhhhc
Q 039263 376 STTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIP-------NSLYAASVIIGFCFG 448 (492)
Q Consensus 376 ~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~-------~~l~~~~~liG~~~G 448 (492)
+.+...+...++..+|.+.+|+++||++||+ .+.+..++..++.++...... ..+++.-.+.|++.|
T Consensus 57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKR------VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 4456788899999999999999999996653 444455555555444333221 246677778899999
Q ss_pred chhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 449 AQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 449 ~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
+.++..|.+++|.|..|+-|...++......+|.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.065 Score=57.52 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=67.1
Q ss_pred HhhCCChhhhhHH-HHHhhhhccccccceeeeccC----Cc-HHHHHHHHHHHHHHHHHHHHHHhcCCC--CchhHHHHH
Q 039263 57 TSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEIT----PP-WVVLAIGSIMNFFGYFMIWLAVTGRIP--KPQVWQMCL 128 (492)
Q Consensus 57 ~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~----Gp-r~~~~iG~vl~~~Gy~~~~~~~~g~i~--~~~~~~l~~ 128 (492)
+.+|++....+++ .++-.+=+..-+.-|.+.||. |+ |+=++.|++-..+-+.++|..- ..+ ....+.+..
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p--~~~~~~k~~ya~vt 118 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP--DFSMTGKLIYALVT 118 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC--CcccCcchHHHHHH
Confidence 4678998888886 555555555678999999974 54 4445778887777777666442 221 111232223
Q ss_pred HHHHhhccccchh--hhhhhhhhhhcCCCCCceeeehhHhhhhhHHHH
Q 039263 129 YICIGANSQSFAN--TGALVTCVKNFPESRGSVLGLLKGFVGLSGAIL 174 (492)
Q Consensus 129 ~~~l~g~g~~~~~--~a~l~t~~k~FP~~RG~a~Gi~~a~~GLsa~i~ 174 (492)
|..+ +.+-+..+ -.++.+.+-.=|++|-...+.-..+..++..+.
T Consensus 119 Y~l~-~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~ 165 (467)
T COG2211 119 YMLL-GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLV 165 (467)
T ss_pred HHHH-HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 22222211 145666777778888877776555554443333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0091 Score=63.43 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=61.9
Q ss_pred HHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 039263 56 KTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGA 134 (492)
Q Consensus 56 ~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g 134 (492)
++.+|.++.+.........++.. ..++.+++.||+|+|.+..+|.++..+|+.+++.. +..+.|.+.....+.+
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~g 330 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-----SVWSLPVALVALAIAS 330 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----CchhHHHHHHHHHHHH
Confidence 44567665443333333334443 36788999999999999999999888898766521 1123454444455666
Q ss_pred ccccchhhhhhhhhhhhcC--------CCCCceeeehh
Q 039263 135 NSQSFANTGALVTCVKNFP--------ESRGSVLGLLK 164 (492)
Q Consensus 135 ~g~~~~~~a~l~t~~k~FP--------~~RG~a~Gi~~ 164 (492)
.|.+...+.......+.=| +++|...|+..
T Consensus 331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~ 368 (448)
T PRK09848 331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS 368 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence 6666665544433333333 23477666643
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0042 Score=64.69 Aligned_cols=115 Identities=7% Similarity=-0.045 Sum_probs=78.9
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh-cCCchhHHHHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAY-GIPNSLYAASV 441 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~-~~~~~l~~~~~ 441 (492)
+.++.++++.++.+.+...+.+.+...++.+.+|+++||++||+ .+.........+...... .....+.+.=.
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW------FLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45677788888888888899999999999999999999997542 222222222222221222 23335667777
Q ss_pred HHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHH
Q 039263 442 IIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l 484 (492)
+.|++-|........ ++|.|-.|+-++.-++...+.++|..+
T Consensus 88 l~G~g~~~~~~~~~~-~~~~~~~~~r~~a~~~~~~~~~lG~~l 129 (368)
T TIGR00903 88 LAALGQPFLLNAFAP-AASQIREERRDLVISLLSFAMYLGIIF 129 (368)
T ss_pred HHHhHhHHHHHHHHH-HHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 889988865544444 488888888888888877666666544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.024 Score=59.87 Aligned_cols=151 Identities=19% Similarity=0.129 Sum_probs=99.4
Q ss_pred cchHHH-HHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHH
Q 039263 26 TGRWFM-VFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 26 ~~Rw~~-l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
.+|.+. ++++.+++...+..|.|. +..+++.-+++......+-..+.+... +.+..+++..|+|+|.++.++.+..
T Consensus 206 ~~~~~~Fll~~~l~~~~~~~~~~f~--~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~ 283 (400)
T PF03825_consen 206 NPRFLVFLLAAFLIGISHAAYYTFF--SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY 283 (400)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444544 566777788888888876 455766655665555554323333333 4778999999999999999998866
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHH--HH-HHHhhccccchhhhhhhhhhhhcCC-CCCceeeehh-HhhhhhHHHHHHHH
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMC--LY-ICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLK-GFVGLSGAILTQLY 178 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~--~~-~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~-a~~GLsa~i~s~i~ 178 (492)
.+=|.++. -..++. .+... .. ..+-|..-+....+++.-..++.|+ .|.++-|+.. ...|+|+.+-+.+.
T Consensus 284 ~vR~~l~a----~~~~~~-~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 284 AVRWLLYA----YFSDPW-PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred HHHHHHHH----HhcCCc-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55554333 111211 11111 11 1234555566788899999999996 5899999875 46799988887777
Q ss_pred HHHcC
Q 039263 179 HAFYG 183 (492)
Q Consensus 179 ~~~f~ 183 (492)
...++
T Consensus 359 G~l~~ 363 (400)
T PF03825_consen 359 GWLYD 363 (400)
T ss_pred HHHHH
Confidence 66665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.018 Score=61.63 Aligned_cols=126 Identities=18% Similarity=0.274 Sum_probs=93.4
Q ss_pred HHHhcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHH
Q 039263 334 LQALFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLL 413 (492)
Q Consensus 334 ~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~ 413 (492)
.-++-..|||=-|-=+.. .++...+=..|..+.+|++++++...++.++-.--.--++.||++||+. ++..+
T Consensus 23 l~~if~vE~WERFsyYGm---raiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----G~~~t 94 (498)
T COG3104 23 LYLIFFVELWERFSYYGM---RAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----GTRRT 94 (498)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHH
Confidence 345666777755532211 1122333333444447788888877778877777888999999999985 55567
Q ss_pred HHHHHHHHHHHHHHHHhc---CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCc
Q 039263 414 FTFVLLFSCVGHPFIAYG---IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYY 467 (492)
Q Consensus 414 l~i~~~l~~~~~ll~~~~---~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~ 467 (492)
+++.-+++.++|++++.. .+..++++.+++++++|.+=+-..++++|.|..++-
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp 151 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP 151 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc
Confidence 788889999999988655 355899999999999999999999999999997653
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.025 Score=61.96 Aligned_cols=140 Identities=18% Similarity=0.247 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHH
Q 039263 32 VFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMI 110 (492)
Q Consensus 32 l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~ 110 (492)
++.+.+..+..+.. |.+.---.++.+|.+....+++..+..+|+.. ++..+++.+|++++..+..+.+..++....+
T Consensus 224 l~~~~~~~l~~~a~--~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 224 LLRSFLFNLFASAV--WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHhhhHH--HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHH
Confidence 33344445544443 33433334677999999999988888888876 6788889999988887777777666554332
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeehh----HhhhhhHHHHHHHHHH
Q 039263 111 WLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLLK----GFVGLSGAILTQLYHA 180 (492)
Q Consensus 111 ~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~~----a~~GLsa~i~s~i~~~ 180 (492)
+.. .+.|..+...++.|.+....++..-....+.=|++ ||.+.++.. +...+|+.+...+.+.
T Consensus 302 -----al~--~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 302 -----ALS--PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred -----hcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23566665666777766666655555567788974 999999853 3333455555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.013 Score=61.49 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLL 419 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~ 419 (492)
..-|.+-+.-|+...+..+...-+.+|+++++.+..++...|++++..-.+|-+....+.||+ +|...+...+.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l~ 86 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHH
Confidence 345667777777778888999999999999999999999999999999999999999999999 55567778888
Q ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceeh
Q 039263 420 FSCVGHPFIAYGIPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA 477 (492)
Q Consensus 420 l~~~~~ll~~~~~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la 477 (492)
+..++.++.+..+.- .+.++=++.|++-|.+|++.-++++|+=.+++-++-=+.+.++
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G 145 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG 145 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH
Confidence 889999887665544 5667778899999999999999999999998888766665433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.011 Score=62.98 Aligned_cols=106 Identities=18% Similarity=0.137 Sum_probs=77.1
Q ss_pred cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHH--Hh-cCCchhHHHHHHHHhh
Q 039263 370 LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFI--AY-GIPNSLYAASVIIGFC 446 (492)
Q Consensus 370 lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~--~~-~~~~~l~~~~~liG~~ 446 (492)
++.+..+.+...+.+.+...++.+..|+++||+++|+ .+.+..++..++.++. .. .....+++.-++.|++
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 4566667788889999999999999999999997653 3434444444443332 21 1233566777888999
Q ss_pred hcchhhhHHHHHHHhhcCCCcccccccceehhhHH
Q 039263 447 FGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVG 481 (492)
Q Consensus 447 ~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~g 481 (492)
.|..+...+.+++|+|-.|+-++-.++...+..+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 179 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLG 179 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888777755543333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0026 Score=71.21 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=81.4
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC----------
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI---------- 432 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~---------- 432 (492)
+.+|-+.++++..+.+..++.+.+++.++-+..|++.||..||+ .+.+..+++.++.++++...
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~------~i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI------VIGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce------EEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 45666678888888899999999999999999999999985543 33444555555554433210
Q ss_pred ------------------------------------------CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccc
Q 039263 433 ------------------------------------------PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTL 470 (492)
Q Consensus 433 ------------------------------------------~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~n 470 (492)
...++++=++.|++-|..+.+.++++.|.+..|+-+..
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 01245677788999999999999999999998888887
Q ss_pred ccccee
Q 039263 471 YNFGAV 476 (492)
Q Consensus 471 yg~~~l 476 (492)
.++...
T Consensus 210 ~~i~~~ 215 (633)
T TIGR00805 210 IGILES 215 (633)
T ss_pred HHHHHH
Confidence 777543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.016 Score=64.00 Aligned_cols=125 Identities=22% Similarity=0.169 Sum_probs=90.8
Q ss_pred hcchhHHHHHHHHHhhccc---eeEEec-chhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchH
Q 039263 337 LFSIDMLIIFIATTCGVGG---TLTAID-NLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPL 412 (492)
Q Consensus 337 l~t~~FWllf~~~~~~~g~---Gl~~i~-n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~ 412 (492)
.++++|+..+..+.+..-+ ++..-+ -+.+|.+++|.+ ...+..+...++.++.+-.+.|-+||.+ +|.+
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf------GRr~ 109 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF------GRRY 109 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh------cchH
Confidence 4667788777654443322 222222 257888889865 5566777889999999999999999999 5667
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccc
Q 039263 413 LFTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYST 469 (492)
Q Consensus 413 ~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~ 469 (492)
.+.+..++.++++...+... ...+..+.++.|++.|.... ....++|+--.|+-..
T Consensus 110 ~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~ 166 (599)
T PF06609_consen 110 FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGL 166 (599)
T ss_pred HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhh
Confidence 88899999999988765544 33577788888999988875 4566899997665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.029 Score=58.97 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=75.1
Q ss_pred HHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 039263 56 KTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGA 134 (492)
Q Consensus 56 ~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g 134 (492)
++.+||++.|+-.++...++.+.. ++++|++-||+|+|.++.+|.++..+-. ++..+ ...+ . -++.++.+.|
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~--~~~~~-~~~~-~---~f~i~gll~g 352 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA--LYLIF-LEGE-L---DFWILGLLVG 352 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH--HHHHH-cccc-H---HHHHHHHHHH
Confidence 558999999999998888888865 8999999999999999988888765542 22222 2211 2 2445666778
Q ss_pred ccccchhhhhhhhhhhhcCCC-CCceeee
Q 039263 135 NSQSFANTGALVTCVKNFPES-RGSVLGL 162 (492)
Q Consensus 135 ~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi 162 (492)
...|-....+=..-.|+.|++ -|.--|+
T Consensus 353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFgl 381 (438)
T COG2270 353 TSLGGAQASSRSYLARLVPKGKEGRFFGL 381 (438)
T ss_pred HhcchHHHHHHHHHHHhCCCccccceeeh
Confidence 888888888888899999975 4766665
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.065 Score=56.58 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=81.4
Q ss_pred chHHHHHHHHHH-HHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHH
Q 039263 27 GRWFMVFASLLI-MAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 27 ~Rw~~l~a~~~i-~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
++|..+....+. ++..+..-.+..| -.+..+|-+ ...+.+.....+.+.. .++.+++.||+|+|.+..+|.++..
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y--~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPY--YFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence 445544444444 3444333322222 333334444 3445555555555544 6788999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC--------CCCCceeee----hhHhhhhhHH
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP--------ESRGSVLGL----LKGFVGLSGA 172 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP--------~~RG~a~Gi----~~a~~GLsa~ 172 (492)
+++.+++..-. . +.|.+....++.|.+.+..+..........-+ ++.|...|+ .|-..|+++.
T Consensus 302 ~~~~~~~~~~~---~--~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~ 376 (428)
T PF13347_consen 302 LGFLLLFFLGP---G--SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGA 376 (428)
T ss_pred HHHHHHHHHHh---h--hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHH
Confidence 99887775533 1 24556666677777776665433332222222 233555554 2455555555
Q ss_pred HHHHH
Q 039263 173 ILTQL 177 (492)
Q Consensus 173 i~s~i 177 (492)
+...+
T Consensus 377 i~g~~ 381 (428)
T PF13347_consen 377 IVGLL 381 (428)
T ss_pred HHHHH
Confidence 55443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.015 Score=61.34 Aligned_cols=117 Identities=13% Similarity=-0.005 Sum_probs=82.1
Q ss_pred hHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc----CCchhHHH
Q 039263 364 GQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG----IPNSLYAA 439 (492)
Q Consensus 364 ~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~----~~~~l~~~ 439 (492)
.++.+.++.++.+.+...+...++..++.+..|.+.||+++| ..+.+..+++.++.+++... +...+.+.
T Consensus 27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r------~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~ 100 (410)
T TIGR00885 27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK------AGILLGLFLYALGAFLFWPAAEIMNYTLFLVG 100 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 455556788877888888999999999999999999999654 46666777777776654221 12245667
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhcCCCcccccc----cceehhhHHHHHHh
Q 039263 440 SVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYN----FGAVASPVGAYILN 486 (492)
Q Consensus 440 ~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg----~~~la~~~gs~l~~ 486 (492)
..+.|++.|.......+.+.|..-.++.++.-+ +..++..+|+.+..
T Consensus 101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999988888887765454444333 34455555554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.083 Score=57.08 Aligned_cols=166 Identities=11% Similarity=0.151 Sum_probs=98.6
Q ss_pred cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHH--HhcCCCC
Q 039263 44 ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLA--VTGRIPK 120 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~--~~g~i~~ 120 (492)
..++=..|+..+-++-|+++.+...+.+...+-.. +.+.+.++.||+|+|+.++++..++.+-..++-.. ......
T Consensus 285 Gi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~- 363 (485)
T KOG0569|consen 285 GINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG- 363 (485)
T ss_pred CcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 35566789999999999999987777555555544 58899999999999999999888777655444322 222221
Q ss_pred chhHHH---HHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 039263 121 PQVWQM---CLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWL 196 (492)
Q Consensus 121 ~~~~~l---~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~ 196 (492)
...+.. +.+..+...+.|.. ..+.--...-||. .|..|........-++.++....+--..+- .+.|.+++-+.
T Consensus 364 ~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-~g~~~filF~i 441 (485)
T KOG0569|consen 364 SWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-IGPYVFILFVI 441 (485)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHH
Confidence 101111 12223333333332 1233335567875 699888887777777766665544333321 11255554445
Q ss_pred HHHHHHhhhhcccccccc
Q 039263 197 PAAISFVFLRTFRIIKIV 214 (492)
Q Consensus 197 ~~~v~~~~~~~i~~~~~~ 214 (492)
|.++.. .+.-+++|+.
T Consensus 442 ~~~~~~--i~~~~~lPET 457 (485)
T KOG0569|consen 442 PLAIFL--IYLYRYLPET 457 (485)
T ss_pred HHHHHH--HHHHHhCccc
Confidence 544433 3355666754
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.048 Score=59.29 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=67.4
Q ss_pred chhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHH
Q 039263 378 TTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFA 456 (492)
Q Consensus 378 ~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~ 456 (492)
+..++..++++..|.+.+|.++|+++|| ..+.++.++..++-++.+... ...+.++-++.|++.|+.-.+.|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk------~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK------KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence 6889999999999999999999999665 466666777777766655443 446789999999999999999999
Q ss_pred HHHHhhcCC
Q 039263 457 IISEIFGLK 465 (492)
Q Consensus 457 i~se~FG~k 465 (492)
.++|+=-.+
T Consensus 166 y~sEiap~~ 174 (513)
T KOG0254|consen 166 YISEIAPAH 174 (513)
T ss_pred hHhhcCChh
Confidence 999987543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.049 Score=56.67 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=71.1
Q ss_pred hhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhcchhhhHHHHH
Q 039263 379 TFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAII 458 (492)
Q Consensus 379 ~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~ 458 (492)
..=|.+++..++--..||-+||+.+|| -.+.+..+..++..++++....-..++.+=..|-++=+..++--+++
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRk------pvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRK------PVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 344899999999999999999999654 34545555555566555544433334443455666677889999999
Q ss_pred HHhhcCCCcc-------ccccc-ceehhhHHHHH
Q 039263 459 SEIFGLKYYS-------TLYNF-GAVASPVGAYI 484 (492)
Q Consensus 459 se~FG~k~~g-------~nyg~-~~la~~~gs~l 484 (492)
+|.+-+||-+ +-|++ ..++|++|.|+
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 9999877654 55555 46778888876
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.54 Score=49.75 Aligned_cols=59 Identities=5% Similarity=0.025 Sum_probs=42.7
Q ss_pred ccHHHHHh-hCCChhhhhHHHHHhhhhcc--ccccceeeeccCCcHHHHHHHHHHHHHHHHH
Q 039263 51 YSSDIKTS-LGYDQSTLNLLSFSKDVGGN--VGVLSGLINEITPPWVVLAIGSIMNFFGYFM 109 (492)
Q Consensus 51 ys~~L~~~-~~~sq~~l~~is~~~~vg~~--~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~ 109 (492)
..|-|.+. .|+|+.|++.--.-...-++ +-++..++.|..+.|++++++++...+-|.+
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~l 87 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLL 87 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 45667776 89999999872111122222 3578899999999999999999877666654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.031 Score=60.60 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=73.5
Q ss_pred CccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhhcchhhh
Q 039263 375 RSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPN-SLYAASVIIGFCFGAQWPL 453 (492)
Q Consensus 375 ~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~-~l~~~~~liG~~~G~~~~~ 453 (492)
....+..+++-++..+|-+++|.+||+++| ...+.+..++..+..+..++.+.- .+.+.=.+.|++.++.+.+
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GR------k~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGR------KPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhccc------HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 334556788999999999999999999854 456777777777777666655544 5667777889999999999
Q ss_pred HHHHHHHhhcCCCccccccc
Q 039263 454 LFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 454 ~P~i~se~FG~k~~g~nyg~ 473 (492)
...+++|++++|+=+..=.+
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred hHhhheeecCcchhhHHHHH
Confidence 99999999999987765444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.22 Score=53.86 Aligned_cols=120 Identities=14% Similarity=0.219 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcH--HHHHHHHHHH----H
Q 039263 32 VFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPW--VVLAIGSIMN----F 104 (492)
Q Consensus 32 l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr--~~~~iG~vl~----~ 104 (492)
|++-.+-+-...| ..+...---++.+|+++.|+..+.+..++.+.. .+..|++.||+||| .++.+..++. .
T Consensus 287 Lia~~l~~dg~~t--i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 287 LIAYFLYSDGVNT--IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 4443443433333 333444445668999999998887777777765 67889999999999 6655444433 1
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCC
Q 039263 105 FGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPESR 156 (492)
Q Consensus 105 ~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~R 156 (492)
.|+..++-. .+...+-|.++.++++.|...|..+.++=..-.|-=|+.|
T Consensus 365 ~g~~G~~~~---~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~ 413 (477)
T PF11700_consen 365 YGLFGFWPS---FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR 413 (477)
T ss_pred HHHHHhhhc---ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch
Confidence 222222211 2111235788888889999999988888888888888644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=6.5 Score=42.63 Aligned_cols=382 Identities=13% Similarity=0.099 Sum_probs=193.2
Q ss_pred ccccchHHHHHHHHHHHHhhCccc--ccccccHHHHH-hhCCChhhhhHHHHHhhhhc-cccccceeeeccCCc-HHHHH
Q 039263 23 GVLTGRWFMVFASLLIMAVAGATY--MFGLYSSDIKT-SLGYDQSTLNLLSFSKDVGG-NVGVLSGLINEITPP-WVVLA 97 (492)
Q Consensus 23 ~~~~~Rw~~l~a~~~i~l~~Gt~Y--~fS~ys~~L~~-~~~~sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gp-r~~~~ 97 (492)
-..+.+|+++....+.++..+..+ .+..=-|.+++ ..+=+++..+++..+..+|- ++++..|..-.|.+. |..++
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli 106 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI 106 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence 345789999888888888877732 22222334433 35556666777644444554 568999999999874 66778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhh--hhhhcCCCCCceeeehhHhhhhhHHHHH
Q 039263 98 IGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVT--CVKNFPESRGSVLGLLKGFVGLSGAILT 175 (492)
Q Consensus 98 iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t--~~k~FP~~RG~a~Gi~~a~~GLsa~i~s 175 (492)
.|.+...+|-.+ +++++-..++ ..|++.+--.+.|.|.+. .+.+.. +.+..|++|-++........ .-|.++.
T Consensus 107 ~s~ii~~~g~ll-Y~~l~~~~~~-~~y~mL~~R~l~Gvg~~n--~a~lR~Y~a~~s~~~dR~rA~a~~~~~~-vlg~ilG 181 (488)
T KOG2325|consen 107 VSFLIAIIGNLL-YLALAYVPNG-VKYLMLVARILTGVGVGN--FAVLRAYIADASTVEDRPRAFAATSGGF-VLGIILG 181 (488)
T ss_pred HHHHHHHHHHHH-HHHHHhcccc-hHHHHHHHHHHcCcCccc--HHHHHHHHHhccCccchHHHHHHhhhHH-HHHHHHh
Confidence 899999999754 4344444332 234444444566766544 455655 55678888877766555433 2456666
Q ss_pred HHHHHHcCC-----------------ChhHHHHHHHHHHHHHHHhhhhcccccccc---c---c------chh---hhHH
Q 039263 176 QLYHAFYGD-----------------NSKALILLIAWLPAAISFVFLRTFRIIKIV---R---Q------ANE---LKIF 223 (492)
Q Consensus 176 ~i~~~~f~~-----------------~~~~fllfla~~~~~v~~~~~~~i~~~~~~---~---~------~~~---~~~f 223 (492)
+..+.+|.+ ....++..+.+.-.+ ++..++.|..+.+ + + +.+ ...+
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~--v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI--VIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVKKPKL 259 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH--HHHHhheeecccCccccccccchhhccchhhhccCCh
Confidence 777776642 122344333332222 2222344444321 1 0 000 1111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-----------ccccCccchhhhhHHHHH---HHhhhhhhhhHHhhhhccCCCCcc-c
Q 039263 224 YKMLYISLGLAGFLMVVIILQN-----------KYAFKRFEYVGSASLVLI---LLFLPIAIVIKEEISLRKSKKPSL-E 288 (492)
Q Consensus 224 ~~~~~~~~~~~~~l~v~~~~~~-----------~~~~~~~~~~~~~~~~~~---ll~~p~~~~~~~~~~~~~~~~~~~-~ 288 (492)
.......+.. .+........+ ...-++.+...-..+++. ++..++......+....-.+++-. -
T Consensus 260 d~~~~~vc~~-~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~ 338 (488)
T KOG2325|consen 260 DWVAVLVCIF-LRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILL 338 (488)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeee
Confidence 1111110100 11111111000 011111111111111111 111122111111111100110000 0
Q ss_pred cC--------CCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEe
Q 039263 289 DA--------NSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAI 360 (492)
Q Consensus 289 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i 360 (492)
.. .-.-+......+ ....+.+ .....-++++|-+-.....+|++.+.+....|-+.-++
T Consensus 339 g~l~~f~~~~i~~yp~~~~s~p----v~~~~~~---------~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~ 405 (488)
T KOG2325|consen 339 GFLIFFLSYYIFTYPWGFYSGP----VQPYNTT---------YAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFI 405 (488)
T ss_pred hHHHHHHhhheeeeeccccccc----ccccccc---------ccCcCcccchhhccCcccChhhheeehhheeccccccc
Confidence 00 000000000000 0000000 00111246788888999999999999998899999988
Q ss_pred cchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHH
Q 039263 361 DNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGH 425 (492)
Q Consensus 361 ~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ 425 (492)
+....=.-+.-+.+..+.+.=.++++.+..+|+..+.++-....-+++++.|.+....++..+..
T Consensus 406 ~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 406 STALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL 470 (488)
T ss_pred cchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence 87555444433334566667788899999999999999998888888877777766555544443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.12 Score=55.62 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=37.3
Q ss_pred cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhh
Q 039263 80 GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANT 142 (492)
Q Consensus 80 ~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~ 142 (492)
.++.+++.||+|+|.+..++.++..++...++.. +.....+.|.+.....+.+.+.+..+.
T Consensus 283 ~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 283 LILFPRLVKSLSRRILWAGASIFPVLSCGVLLLM--GLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999988888766666544322 111112234444444555555555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.058 Score=58.11 Aligned_cols=132 Identities=13% Similarity=0.047 Sum_probs=90.4
Q ss_pred HhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 039263 40 AVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGR- 117 (492)
Q Consensus 40 l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~- 117 (492)
...+..+.+-.+.+ +.+|+++.+++++.....++... ....+++.+|++.|.++.++.++..+++..........
T Consensus 267 ~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~ 343 (468)
T TIGR00788 267 NLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN 343 (468)
T ss_pred hcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc
Confidence 33444433333444 35899999999874444455544 67788888999999999999999888875432221111
Q ss_pred ----CCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHH
Q 039263 118 ----IPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQ 176 (492)
Q Consensus 118 ----i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~ 176 (492)
+++ .+.+.....+.+.+.+...++.+...++.=|+ ++|+..|+..++..+|..+-+.
T Consensus 344 ~~~gi~~--~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~ 405 (468)
T TIGR00788 344 LAFGISD--EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGF 405 (468)
T ss_pred cccCCCC--eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence 121 22233345566777778888888888998885 6899999999988998777664
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.19 Score=53.71 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=78.0
Q ss_pred ccccHHHHHhhCCChhhhhHHHHHhhhhccccccceeeeccCC-----cHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 49 GLYSSDIKTSLGYDQSTLNLLSFSKDVGGNVGVLSGLINEITP-----PWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 49 S~ys~~L~~~~~~sq~~l~~is~~~~vg~~~~~~~G~~~D~~G-----pr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
..-.+-+|+++|++.+|++.+....++--.+-++.|.+.|.++ +|+=+++|+++..+++..+. ...+...+ .
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~-~~~~~~~s--~ 86 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLA-LLPASESS--A 86 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHH-hcccccch--h
Confidence 3446789999999999999998877777778899999999986 66667888888866654333 33332222 3
Q ss_pred HHHHHHHHHhhccccchhhhh---hhhhhhhcCCCCCceeeeh
Q 039263 124 WQMCLYICIGANSQSFANTGA---LVTCVKNFPESRGSVLGLL 163 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~---l~t~~k~FP~~RG~a~Gi~ 163 (492)
.....+..+...|..+.|.++ ++-.+|.-|++||......
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~ 129 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFV 129 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHH
Confidence 334445566777777777654 4446677888777655443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.072 Score=55.02 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=63.4
Q ss_pred cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 039263 44 ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQ 122 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~ 122 (492)
..|.|.+| ++||++..|++.+-.++...+. +|.+.|.+.||+|+|..+++-+++..+... ..+.++
T Consensus 54 GpY~Y~LY-----~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl------~k~~~~-- 120 (354)
T PF05631_consen 54 GPYLYALY-----ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL------TKHSSN-- 120 (354)
T ss_pred cchhHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH------HHhccc--
Confidence 36888877 3699999999998777776665 599999999999999999999998887743 334443
Q ss_pred hHHHHHHHHHhhccccchhh
Q 039263 123 VWQMCLYICIGANSQSFANT 142 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~ 142 (492)
++.+.+=-+++|++....++
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44343334677776665544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.067 Score=57.88 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=74.2
Q ss_pred ecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCC------
Q 039263 360 IDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIP------ 433 (492)
Q Consensus 360 i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~------ 433 (492)
..++.++.+.+|.+....+....+-.+...+.-.+.|++|||..+|++..|++.+. ....+.++.+++.....
T Consensus 24 ~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~-g~~~~~~~l~ll~~~~~~~~~~~ 102 (477)
T TIGR01301 24 LSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAA-GAALVAFAVILIGFAADIGHLFG 102 (477)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHH-HHHHHHHHHHHHHhCchhhhhcc
Confidence 45677788889998777777788889999999999999999865555545555443 23333334333322111
Q ss_pred ------------chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCc--ccccccc
Q 039263 434 ------------NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYY--STLYNFG 474 (492)
Q Consensus 434 ------------~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~--g~nyg~~ 474 (492)
..+.++..+..++......-+.++++|.+..++- +.-+++.
T Consensus 103 ~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~ 157 (477)
T TIGR01301 103 DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYF 157 (477)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHH
Confidence 0112233344568888888899999999987643 3444543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.083 Score=56.69 Aligned_cols=122 Identities=11% Similarity=0.117 Sum_probs=72.1
Q ss_pred hCCChhhhhHH-HHHhhhhccccccceeeeccC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Q 039263 59 LGYDQSTLNLL-SFSKDVGGNVGVLSGLINEIT-PPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANS 136 (492)
Q Consensus 59 ~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~-Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g 136 (492)
+|+||++..-+ +.....-=...+++|++.||+ |.|.++.+|+++..+|+.++... +. . .+..++.....+ ++|
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~--~~-~-~~~gl~i~L~~I-~iG 130 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS--SV-S-GPGGLYIGLALI-IVG 130 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc--cc-c-cccHHHHHHHHH-Hhc
Confidence 56999886654 443333333588999999996 99999999999999999876533 21 1 112222222333 377
Q ss_pred ccchhhhhhhhhhhhcCC--CCCceeeeh--hHhhhhhHHHHHHHHHHHcCCChh
Q 039263 137 QSFANTGALVTCVKNFPE--SRGSVLGLL--KGFVGLSGAILTQLYHAFYGDNSK 187 (492)
Q Consensus 137 ~~~~~~a~l~t~~k~FP~--~RG~a~Gi~--~a~~GLsa~i~s~i~~~~f~~~~~ 187 (492)
.|.+=+..-.-.-+-+|+ .| +-.|.. -...=+| ++++++...++.++..
T Consensus 131 ~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiG-sl~~p~i~~~~~~~~g 183 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIG-SLIAPIITGLLAINYG 183 (498)
T ss_pred cccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehH-HHHHHHHHHHHHHhhC
Confidence 777655444445577863 23 333332 1111233 5566666666655443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.086 Score=56.79 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=84.0
Q ss_pred HHHhhcCCCCCc-cchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHH
Q 039263 365 QIGSSLGYPARS-TTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG-IPNSLYAASVI 442 (492)
Q Consensus 365 ~I~~slg~~~~~-~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~~~l 442 (492)
++.+.+|.++.+ .+...+.+.+.-.+.-+.+|+++||++-| +. +.+..+.-.+..+++.+. ....+.+.=++
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~v-L~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~l 124 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PV-LVLQALSFVCVWLLLLLGTSVWHMQLMEVF 124 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577888887 77888999999999999999999999744 33 333333333333333232 23456777778
Q ss_pred HHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHHH
Q 039263 443 IGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAYI 484 (492)
Q Consensus 443 iG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~l 484 (492)
.|++-|+.+ .+-..+..+|-.|+.++-.++...+..+|..+
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I 165 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL 165 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999 99999999999999999888877776666554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.032 Score=61.25 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccC-CcHHHHHHHHHHHHHHHHHHH
Q 039263 36 LLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEIT-PPWVVLAIGSIMNFFGYFMIW 111 (492)
Q Consensus 36 ~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~-Gpr~~~~iG~vl~~~Gy~~~~ 111 (492)
.++| ..-..|.=+.-+ .+++||+++.+|...|..+.+++..+ .++..++-+|. -||++ .+|+++.++|.+++.
T Consensus 12 ~~~q-~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwi-g~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 12 GLFQ-MMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWI-GIGALLMGLGSLLFA 86 (539)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHH-HHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee-eecHHHHHHHHHHHh
Confidence 3445 334446555555 89999999999999999999999875 66777777764 45554 669999999976543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.087 Score=55.79 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=69.9
Q ss_pred ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCCC-CC
Q 039263 79 VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPES-RG 157 (492)
Q Consensus 79 ~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG 157 (492)
++.+..++.+|.|||..++++++...+=+.+ .+..++ .|.+...-.+-+.-.+..-.++++-..++||+| ..
T Consensus 275 ~m~~~p~li~rig~k~~Lllag~i~~iRi~~-----~~~~~~--~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA 347 (412)
T PF01306_consen 275 MMFFSPWLINRIGAKNLLLLAGVIMAIRIIG-----SGFATN--PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA 347 (412)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----HHT--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHHHHH-----Hhhhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH
Confidence 5789999999999999999999877665533 344444 455666777888888888899999999999976 23
Q ss_pred ceeeeh-hHhhhhhHHHHHHHHHHHcCC
Q 039263 158 SVLGLL-KGFVGLSGAILTQLYHAFYGD 184 (492)
Q Consensus 158 ~a~Gi~-~a~~GLsa~i~s~i~~~~f~~ 184 (492)
++-.+. .-..|+|..+++.+....++.
T Consensus 348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~ 375 (412)
T PF01306_consen 348 TLYLVGFQFAKQIGIIILSPLAGYLYDR 375 (412)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhHhh
Confidence 444332 345577888888777666653
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.39 Score=51.79 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=101.9
Q ss_pred CCCcchhhccccccccccchHHHHHHHHHHHH-hhCc-c-cccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccce
Q 039263 9 SCCSLREMKSSSLVGVLTGRWFMVFASLLIMA-VAGA-T-YMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSG 84 (492)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~Rw~~l~a~~~i~l-~~Gt-~-Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G 84 (492)
++-.-...+++...+..++++.....+.++-+ -.|- . .. - -.+|.+++|++.+.+.+ ++...++.....+..
T Consensus 223 ~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~-~---~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~ 298 (463)
T KOG2816|consen 223 SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVL-L---LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLL 298 (463)
T ss_pred chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEE-E---EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555544556667765555555533 3221 1 11 1 13678899999999864 666655555444444
Q ss_pred -eeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhh-cCCCCCceeee
Q 039263 85 -LINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKN-FPESRGSVLGL 162 (492)
Q Consensus 85 -~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~-FP~~RG~a~Gi 162 (492)
.+.-.+|-|.++.+|...-.++..++... .. .|+++...++...+ +...++.-.-..|+ .||+||++-++
T Consensus 299 ~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~--~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~ 370 (463)
T KOG2816|consen 299 PLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TE--TWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGI 370 (463)
T ss_pred HHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----cc--chhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhH
Confidence 66677788888899999888886544422 22 47776666665543 34444444444444 58999999999
Q ss_pred hhHhhhhhHHHHHHHHHHHc
Q 039263 163 LKGFVGLSGAILTQLYHAFY 182 (492)
Q Consensus 163 ~~a~~GLsa~i~s~i~~~~f 182 (492)
....-+|++.+.+.+|+..+
T Consensus 371 is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 371 ISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHHHHHhhhhhHHHHHHHH
Confidence 98888888887777777655
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.012 Score=62.21 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=77.8
Q ss_pred ccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHhhhcchh
Q 039263 376 STTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI----PNSLYAASVIIGFCFGAQW 451 (492)
Q Consensus 376 ~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~----~~~l~~~~~liG~~~G~~~ 451 (492)
..+...+...++..+|-++.|+++||++||+ .+.+..+++.++.++..+.+ ...+.++-.+.|++.|+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKP------ALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456678889999999999999999997764 44455556666665544443 4466777789999999999
Q ss_pred hhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 452 PLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 452 ~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
.+.|..+.|.=..||=|..-.+..++..+|.
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~ 151 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGI 151 (451)
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999988888877777666655553
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.48 Score=51.78 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=85.3
Q ss_pred HHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHh
Q 039263 37 LIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVT 115 (492)
Q Consensus 37 ~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~ 115 (492)
...+..-..+...+|-++..+.+++++.|.+.+.....+... .=+..|.+.|+.+++...+--..+...|...+++...
T Consensus 306 ~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 333344446777888888889999999999996444444444 4688999999988444333233333455555554443
Q ss_pred cCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHH
Q 039263 116 GRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYH 179 (492)
Q Consensus 116 g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~ 179 (492)
. .++.++.+.++-|...|.+..-.-.+..+..+ +|=..+-|++.-+-|+++.+-.++..
T Consensus 386 ~-----~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 386 T-----TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred c-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 2 25677777777777666654333335666665 44466777766666665555444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.51 Score=49.35 Aligned_cols=132 Identities=15% Similarity=0.184 Sum_probs=80.7
Q ss_pred hCcccccccccH-HHHHhhCCChhhhhHHHHHhhhhccc-------cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHH
Q 039263 42 AGATYMFGLYSS-DIKTSLGYDQSTLNLLSFSKDVGGNV-------GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLA 113 (492)
Q Consensus 42 ~Gt~Y~fS~ys~-~L~~~~~~sq~~l~~is~~~~vg~~~-------~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~ 113 (492)
.+..|.|..+.- ++.+..+-++.+.. ..++.+|+.+ .+..|.+.||+|+|+++++|.+...+-| ..|.+
T Consensus 41 ~~~L~~~~~~~V~~F~~a~~~~~~~~~--~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~-ll~~~ 117 (451)
T KOG2615|consen 41 VSSLYPFVVFMVRDFNIAIGEPDGASV--FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSY-LLWAL 117 (451)
T ss_pred ccchhHHHHHhhHHHHHhhCCcccccc--hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHH-HHHHH
Confidence 478888887643 34444444443232 3334444443 5689999999999999999999888855 55544
Q ss_pred HhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCC
Q 039263 114 VTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGD 184 (492)
Q Consensus 114 ~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~ 184 (492)
-.+ ...+.+-=+++|+..|-... +-.-...-++ ++|+++.+..-..+|+| +|..+...+++..
T Consensus 118 S~~------F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lG-filGPmIGgyla~ 181 (451)
T KOG2615|consen 118 SRN------FAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLG-FILGPMIGGYLAQ 181 (451)
T ss_pred HHH------HHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcc-hhhcchhhhHHHh
Confidence 222 21122223456655554321 2233446675 57999999998888885 5666666665543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.72 Score=43.71 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=67.2
Q ss_pred cccHHHHHhhCCCh--hhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 039263 50 LYSSDIKTSLGYDQ--STLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQM 126 (492)
Q Consensus 50 ~ys~~L~~~~~~sq--~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l 126 (492)
...+.+.++++.+. .+.+.+.....++... .++.|.+.||+|+|....++......+..... . ... ...+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~-~~~---~~~~~~ 97 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA-L-APN---VGLALL 97 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH-h-Ccc---chHHHH
Confidence 34444555555554 3455554444445444 48999999999999777767665344422211 1 111 123444
Q ss_pred HHHHHHhhccccchhhhhhhhhhhhcCC--CCCceeeehhH
Q 039263 127 CLYICIGANSQSFANTGALVTCVKNFPE--SRGSVLGLLKG 165 (492)
Q Consensus 127 ~~~~~l~g~g~~~~~~a~l~t~~k~FP~--~RG~a~Gi~~a 165 (492)
.....+.|.+.+..+.+......+++|+ +|+...++...
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4444446777777777888888899996 67777776554
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.099 Score=55.63 Aligned_cols=114 Identities=10% Similarity=0.085 Sum_probs=83.4
Q ss_pred hHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHH
Q 039263 364 GQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI-PNSLYAASVI 442 (492)
Q Consensus 364 ~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~l 442 (492)
..+.+..+.++....++-..+.+.-.+.-.+.|++.||.- |.+.+.+...+-.++.+...+.. -..+.++=.+
T Consensus 57 ~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN------R~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~ 130 (493)
T KOG1330|consen 57 KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYN------RKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGF 130 (493)
T ss_pred HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcC------cceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778888888889999999999999999999994 44444444433333333322221 1134566678
Q ss_pred HHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHH
Q 039263 443 IGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAY 483 (492)
Q Consensus 443 iG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~ 483 (492)
+|++-.....+.|++++|.|=..+=|.-+++..++.++|+.
T Consensus 131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg 171 (493)
T KOG1330|consen 131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG 171 (493)
T ss_pred hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc
Confidence 89999999999999999999877888888888888888754
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.69 Score=49.47 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=87.6
Q ss_pred cccchH--HHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhH-----HHH----Hhhhhccc-cccceeeeccC
Q 039263 24 VLTGRW--FMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNL-----LSF----SKDVGGNV-GVLSGLINEIT 90 (492)
Q Consensus 24 ~~~~Rw--~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~-----is~----~~~vg~~~-~~~~G~~~D~~ 90 (492)
....|| .-|.+....-+..-. .|..++|++.+-+..++..++-.. ++. ...++... -++...+.|+.
T Consensus 296 ~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i 375 (538)
T KOG0252|consen 296 RLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII 375 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh
Confidence 345566 455555555444444 699999999999999988764322 111 11222222 35778999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHhhccccchhhhhhhhhhhhcCCC-CCceeeehhHh
Q 039263 91 PPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV-WQMCLYICIGANSQSFANTGALVTCVKNFPES-RGSVLGLLKGF 166 (492)
Q Consensus 91 Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~-~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~-RG~a~Gi~~a~ 166 (492)
|++.+.+-|-+++.+=++.+...+......... ..+.+...++++|= ++.+.....+.||.+ ||+.=||..+.
T Consensus 376 GRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FParvR~t~hGIsAA~ 450 (538)
T KOG0252|consen 376 GRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFPARVRSTCHGISAAS 450 (538)
T ss_pred hhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhchHHHhhhhhhHHHHh
Confidence 999999988887766655544444433321111 12223445556553 346677788999965 99999986554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.39 Score=50.89 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=60.6
Q ss_pred hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcC---C---chhHHHHH
Q 039263 368 SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGI---P---NSLYAASV 441 (492)
Q Consensus 368 ~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~---~---~~l~~~~~ 441 (492)
+.+|.+....++..++..++.++.=.++|++|||..+|++-.|+|.+..+........+++..+. . ..+++..+
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 34677777888889999999999999999999999888877788876432222222212222211 1 12233344
Q ss_pred HHHhhhcchhhhHHHHHHHhh
Q 039263 442 IIGFCFGAQWPLLFAIISEIF 462 (492)
Q Consensus 442 liG~~~G~~~~~~P~i~se~F 462 (492)
+.+.+|.....-+-++.+|+.
T Consensus 118 l~~~~~t~~~ip~~al~~~~t 138 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAIT 138 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhc
Confidence 556666665555556666655
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.42 Score=50.48 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=82.6
Q ss_pred HHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHH
Q 039263 365 QIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPN-SLYAASVII 443 (492)
Q Consensus 365 ~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~-~l~~~~~li 443 (492)
.+.++.+++.++.+..-|.++|.=+++.+++|.+|||..-|+ ++.+.+++..+..+++-+.+.. .+.+.-.+.
T Consensus 54 ~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~------fm~~gLilsai~nil~Gfs~s~~~~~~l~~ln 127 (448)
T COG2271 54 ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY------FMAFGLILSAIVNILFGFSPSLFLFAVLWVLN 127 (448)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce------eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344556788888889999999999999999999999884332 5566667777776665444422 445666677
Q ss_pred HhhhcchhhhHHHHHHHhhcCCCcccccccceeh
Q 039263 444 GFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVA 477 (492)
Q Consensus 444 G~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la 477 (492)
|+.=|.-|+-.-.++..+|..|.=|+-|++-.++
T Consensus 128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~s 161 (448)
T COG2271 128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTS 161 (448)
T ss_pred HHHhcCCCcHHHHHHHHHcCccccCceEEEehhh
Confidence 9999999999999999999999888888776544
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.74 Score=50.07 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=77.1
Q ss_pred hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHhhh
Q 039263 369 SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF-VLLFSCVGHPFIAYGIPNSLYAASVIIGFCF 447 (492)
Q Consensus 369 slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i-~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~ 447 (492)
.+++...+-+...+++.++-.+|.+.+|++.||+ |-...+.. ..+-.+.+.+-........+.+.=.+.|++-
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~------~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF------PLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC------ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444445557788999999999999999999999 42222211 1111111111112233445566677889999
Q ss_pred cchhhhHHHHHHHhhcCCCcccccccce----ehhhHHHHHHh
Q 039263 448 GAQWPLLFAIISEIFGLKYYSTLYNFGA----VASPVGAYILN 486 (492)
Q Consensus 448 G~~~~~~P~i~se~FG~k~~g~nyg~~~----la~~~gs~l~~ 486 (492)
++.|.-...+++-+|+.++.|.-.++.. +++..|+++=.
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~ 191 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAY 191 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHH
Confidence 9999999999999999999999999987 55566555533
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.83 Score=46.10 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccCCcHHHHHHHHHHHH
Q 039263 26 TGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEITPPWVVLAIGSIMNF 104 (492)
Q Consensus 26 ~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~Gpr~~~~iG~vl~~ 104 (492)
..-|...+.++.--...=..|+ +=..-.++|+|+|..+.++| ++.-.+.....+.-|.+.||+|.+......+....
T Consensus 264 ppfw~~~iicv~yyva~fPFi~--lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFIT--LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT 341 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence 4556666665554433222221 11234678999999988887 77666666778889999999999887755554444
Q ss_pred H-HHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhh-hhhhh-hhcCCC-CCceeeehhHhhhhhHHH
Q 039263 105 F-GYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGA-LVTCV-KNFPES-RGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 105 ~-Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~-l~t~~-k~FP~~-RG~a~Gi~~a~~GLsa~i 173 (492)
+ |-.+.. ++- - .|+--++ +.|.+ +.-.|| +=.++ .-=|++ -|++-|...+---|+=++
T Consensus 342 l~~H~~l~--Ft~--l-sPy~~m~----~lGLs--ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 342 LLGHSGLF--FTF--L-SPYTSMT----FLGLS--YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred HHHhhhHH--hhh--c-cHHHHHH----HHhhh--HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence 4 322222 111 1 1222222 23332 222233 22222 223764 698888777666554333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.3 Score=46.00 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=67.1
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVI 442 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~l 442 (492)
+.+|-+++|.+.+.++++.++==++=+..- .+.-++.||++..|..+ ...++.+++.++=.......++.++.+
T Consensus 35 L~~Ir~~~gls~s~aGlLTtLPll~fg~~a----p~a~~Lar~~g~er~l~--~~Llli~~G~~iR~~~~~~~L~~gt~l 108 (395)
T COG2807 35 LDEIRQDLGLSFSVAGLLTTLPLLAFGLFA----PAAPRLARRFGEERSLF--LALLLIAAGILIRSLGGLPLLFLGTLL 108 (395)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHhhHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344555667766666655444333222222 23456666665555554 455666666654323345578999999
Q ss_pred HHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 443 IGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 443 iG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
+|.+-+..-.+.|+++.+.|+ |+.+..=|.
T Consensus 109 ~G~gIav~nVLLPslIK~~Fp-k~~~~mtgl 138 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFP-KRVGLMTGL 138 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcc-cchhhHHhH
Confidence 999999999999999999997 777765555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.79 E-value=6.7 Score=42.34 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=57.8
Q ss_pred hCCChhhhhH--HHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Q 039263 59 LGYDQSTLNL--LSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGAN 135 (492)
Q Consensus 59 ~~~sq~~l~~--is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~ 135 (492)
+++++.|+.. .......+... .++.-++.+|+|+|.+..+|.++..+++.++|..- ..++++..++.++.+.
T Consensus 265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-----~~~~~l~~~~~~i~~~ 339 (467)
T COG2211 265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-----AGSVVLIVVALIIAGV 339 (467)
T ss_pred EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-----CcchHHHHHHHHHHHH
Confidence 4445544433 34444444444 56788999999999999999999999999988663 2335656667778888
Q ss_pred cccchhhhhhhhhh
Q 039263 136 SQSFANTGALVTCV 149 (492)
Q Consensus 136 g~~~~~~a~l~t~~ 149 (492)
|.+..+. +..++
T Consensus 340 g~~~~~~--l~wam 351 (467)
T COG2211 340 GTGIANP--LPWAM 351 (467)
T ss_pred Hhhcccc--ccHHH
Confidence 7777654 55544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=85.59 E-value=1.3 Score=49.96 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=49.4
Q ss_pred ccHHHHHhhCCChhhhhHH-HHHhhhhccccccceeeeccC-CcHHHHHHHHHHHHHHHHHHHH
Q 039263 51 YSSDIKTSLGYDQSTLNLL-SFSKDVGGNVGVLSGLINEIT-PPWVVLAIGSIMNFFGYFMIWL 112 (492)
Q Consensus 51 ys~~L~~~~~~sq~~l~~i-s~~~~vg~~~~~~~G~~~D~~-Gpr~~~~iG~vl~~~Gy~~~~~ 112 (492)
+..-+.+.+|+++++...+ .....+.-.+.+++|.+.|++ |++.++++|.++..+|+.++..
T Consensus 10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3445666799999987776 555555555699999999996 9999999999999999977654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=83.91 E-value=4.9 Score=39.72 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=51.6
Q ss_pred HHHHhhccceeEEecc--hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHH
Q 039263 347 IATTCGVGGTLTAIDN--LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVG 424 (492)
Q Consensus 347 ~~~~~~~g~Gl~~i~n--~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~ 424 (492)
..+.+...+|..|... ..|+-+++++++++.++.-..-.++..+| +.+|.+.|+. |-...+.+..+...++
T Consensus 7 a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~------gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 7 ASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF------GPWVVLLIGAVLGFVG 79 (250)
T ss_pred HHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc------chHHHHHHHHHHHHHH
Confidence 3555566677777665 56777788998776666666667777777 8889999988 3334456667777777
Q ss_pred HHHH
Q 039263 425 HPFI 428 (492)
Q Consensus 425 ~ll~ 428 (492)
..+.
T Consensus 80 Y~~~ 83 (250)
T PF06813_consen 80 YGLL 83 (250)
T ss_pred HHHH
Confidence 7553
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=83.16 E-value=2.2 Score=48.15 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=69.6
Q ss_pred hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCC---------chhHHH
Q 039263 369 SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIP---------NSLYAA 439 (492)
Q Consensus 369 slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~---------~~l~~~ 439 (492)
.+++++.+++..+..+.-...+--++.|++.|+.. +|.+++.+..++..+++.+++.... ..++++
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~l-----G~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWL-----GKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 36776666666677777777788888999999774 5556777777788888876654321 126678
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhcCC
Q 039263 440 SVIIGFCFGAQWPLLFAIISEIFGLK 465 (492)
Q Consensus 440 ~~liG~~~G~~~~~~P~i~se~FG~k 465 (492)
.+++.++-|++=+-+.+...|-|..+
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~ 117 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEER 117 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCcc
Confidence 88899999999999999999999754
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=82.13 E-value=0.54 Score=37.66 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=36.5
Q ss_pred hHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhc
Q 039263 364 GQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKY 406 (492)
Q Consensus 364 ~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~ 406 (492)
.-..+++|++..+.++..++..+...++..+||.+.||..|++
T Consensus 24 ~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 24 PLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 3444568898888899999999999999999999999997653
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=81.68 E-value=2.3 Score=45.62 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=40.6
Q ss_pred hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHH
Q 039263 369 SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFV 417 (492)
Q Consensus 369 slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~ 417 (492)
-+|.+...+++...+--++.++-=.+.|++|||..+|++-.|+|.+..+
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~ 87 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGA 87 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHH
Confidence 3466766777778888899999999999999999988888899987543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.49 E-value=4.4 Score=38.25 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=61.3
Q ss_pred ccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCC---chhHHHHHHHHhhhcchhh
Q 039263 376 STTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIP---NSLYAASVIIGFCFGAQWP 452 (492)
Q Consensus 376 ~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~---~~l~~~~~liG~~~G~~~~ 452 (492)
..+...+...+....+.+.+|.++|+.+|| |. +.+......++.++...... ..+.+...+.|++.|....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRR----KV--LIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccch----HH--HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHH
Confidence 356677888899999999999999998554 22 22222212222222222222 2344555557999999999
Q ss_pred hHHHHHHHhhcC-CCccccccccee
Q 039263 453 LLFAIISEIFGL-KYYSTLYNFGAV 476 (492)
Q Consensus 453 ~~P~i~se~FG~-k~~g~nyg~~~l 476 (492)
...++++|.+.. ++.+...+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHH
Confidence 999999999976 455655555444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.20 E-value=7 Score=42.12 Aligned_cols=150 Identities=16% Similarity=0.289 Sum_probs=101.5
Q ss_pred ccchHHHHHHHHHHHHhhCcccccccccHHHHHh--hCCChhhhhHH-HHHhhhhccc-cccceee---eccCCcHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTS--LGYDQSTLNLL-SFSKDVGGNV-GVLSGLI---NEITPPWVVLA 97 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~--~~~sq~~l~~i-s~~~~vg~~~-~~~~G~~---~D~~Gpr~~~~ 97 (492)
..+|++.++.=...-...-+.|=.++|-..+.-. .+.+...+-.+ +....+|.+. |.+.+.+ .+++|.+++..
T Consensus 237 ~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~ 316 (461)
T KOG3098|consen 237 LKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL 316 (461)
T ss_pred hcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence 3455555554444444455567778888888765 33333333333 5555555554 4544444 45679999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-----Cc------hhHHHHHHHHHhhccccchhhhhhhhhhhhcCCCCCceeeehhHh
Q 039263 98 IGSIMNFFGYFMIWLAVTGRIP-----KP------QVWQMCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGF 166 (492)
Q Consensus 98 iG~vl~~~Gy~~~~~~~~g~i~-----~~------~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~~RG~a~Gi~~a~ 166 (492)
+|.+++.+++.+..+.+-...+ .. .+.+....+.+.|.|.+..++...+.+..-+||+|-.+-.+.+-+
T Consensus 317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfy 396 (461)
T KOG3098|consen 317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFY 396 (461)
T ss_pred HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 9999999999888877655432 11 122233456778999999999999999999999999999888888
Q ss_pred hhhhHHHH
Q 039263 167 VGLSGAIL 174 (492)
Q Consensus 167 ~GLsa~i~ 174 (492)
.+.++.+.
T Consensus 397 q~~~s~v~ 404 (461)
T KOG3098|consen 397 QSVASCVA 404 (461)
T ss_pred HHHHHHHH
Confidence 87776553
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.95 E-value=3.7 Score=43.38 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=83.9
Q ss_pred CCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHhhhcchh
Q 039263 373 PARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIP-NSLYAASVIIGFCFGAQW 451 (492)
Q Consensus 373 ~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~-~~l~~~~~liG~~~G~~~ 451 (492)
.+.+.+++-+...+.+.+--...|.+.||++ +..-+++.+.+|..+..++++... ..++++=++=|++....+
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iG------y~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIG------YKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhc------cccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 3455677788899999999999999999995 445677888899998888887653 356777778899999999
Q ss_pred hhHHHHHHHhhcCCCc-c----ccccc----ceehhhHHHHHHh
Q 039263 452 PLLFAIISEIFGLKYY-S----TLYNF----GAVASPVGAYILN 486 (492)
Q Consensus 452 ~~~P~i~se~FG~k~~-g----~nyg~----~~la~~~gs~l~~ 486 (492)
..--++.+|.|..+|- | ..-|+ ..++||.|+++..
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe 221 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE 221 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh
Confidence 9999999999986662 3 33344 3567888887754
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.20 E-value=59 Score=35.18 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCCCccchhhhHHHhhhhhhhcccc-hhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhcc
Q 039263 371 GYPARSTTTFVSLVSIWNYLGRVVAG-FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGA 449 (492)
Q Consensus 371 g~~~~~~~~~Vsl~Si~N~~GRl~~G-~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~G~ 449 (492)
+.++.+.+.+.++.++.+..+-++.. .++-.++.| + ...+.+....+..+++++............+..--+.
T Consensus 273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~----~--~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~ 346 (463)
T KOG2816|consen 273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK----R--LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI 346 (463)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----h--HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Confidence 55556666777888888888766666 555555432 2 5556667777777777777766664444444444455
Q ss_pred hhhhHHHHHHHhhcCCCcccccccc----eehhhHHHHHHhh
Q 039263 450 QWPLLFAIISEIFGLKYYSTLYNFG----AVASPVGAYILNV 487 (492)
Q Consensus 450 ~~~~~P~i~se~FG~k~~g~nyg~~----~la~~~gs~l~~~ 487 (492)
....+-++++-+=+.+..|++++++ .+++.+++.+++.
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence 5666666777777788899988886 4456666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.79 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.77 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.57 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.52 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.31 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.19 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.11 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 97.82 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 97.78 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.66 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 97.61 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.53 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 97.18 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-19 Score=181.44 Aligned_cols=346 Identities=11% Similarity=0.092 Sum_probs=225.2
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.+++|..++......+..|. .+.++.+.|++++++|+|..|++++.....++.. ..++.|.+.||+|+|.++++|.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34556665555556666665 4788899999999999999999998777777765 589999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
..++..+.+.. ...+ ++|.+...-++.|.|.+..+++......+++| ++||.+.|+..++.++|..+-..+...+
T Consensus 101 ~~~~~~~~~~~--~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPA--AEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhc--cccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776432 2222 36767777788899999999999999999998 5789999999888888877765544333
Q ss_pred c-CCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHH-------HHHHHHHHHHHHHHHHhhhhcccccCccc
Q 039263 182 Y-GDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFY-------KMLYISLGLAGFLMVVIILQNKYAFKRFE 253 (492)
Q Consensus 182 f-~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~-------~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 253 (492)
. +..... ... .....+ .+..+.+. ++... ..++...+
T Consensus 177 ~~~~~~~~-------~~~--------~~~~~~----~~~~~~~~~~~~~~w~~~~~--~~~~~~~~-------------- 221 (438)
T 3o7q_A 177 ILSNVPHQ-------SQD--------VLDKMS----PEQLSAYKHSLVLSVQTPYM--IIVAIVLL-------------- 221 (438)
T ss_dssp HHTSSCCC-------CHH--------HHHHSC----HHHHHHHHHHHHHHHHHHHH--HHHHHHHH--------------
T ss_pred Hhcccccc-------ccc--------ccccCC----cchhhhhhhhhhhhHHHHHH--HHHHHHHH--------------
Confidence 2 110000 000 000000 00011111 01110 00000000
Q ss_pred hhhhhHHHHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccH
Q 039263 254 YVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTI 333 (492)
Q Consensus 254 ~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~ 333 (492)
+..+... .+ .|+... ++++ + +++.+...++
T Consensus 222 -----------~~~~~~~-~~-----------------~p~~~~-~~~~---------~-----------~~~~~~~~~~ 251 (438)
T 3o7q_A 222 -----------VALLIML-TK-----------------FPALQS-DNHS---------D-----------AKQGSFSASL 251 (438)
T ss_dssp -----------HHHHHHH-CC-----------------CCCCTT-TCCC---------C-----------SSTTSHHHHH
T ss_pred -----------HHHHHHH-Hc-----------------CCcccc-cccc---------c-----------ccccchhhhH
Confidence 0000000 00 000000 0000 0 0001113467
Q ss_pred HHHhcchhHHHHHHHHHhhccceeEEecchhHH-Hhhc-CCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCch
Q 039263 334 LQALFSIDMLIIFIATTCGVGGTLTAIDNLGQI-GSSL-GYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRP 411 (492)
Q Consensus 334 ~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I-~~sl-g~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~ 411 (492)
++.+|++++|...+..++..+....+.+....+ .+.. |.+..+++...++..+.+.+||++.|+++||++||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~------ 325 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH------ 325 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 889999999999998888777666666677777 6664 88877788888999999999999999999999554
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCC
Q 039263 412 LLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLK 465 (492)
Q Consensus 412 ~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k 465 (492)
..+.+..++..++.+++...+.....+...+.|++++..+....++..|.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T 3o7q_A 326 KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345555556666655554444344455667889999999999999999999854
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=185.91 Aligned_cols=357 Identities=12% Similarity=0.055 Sum_probs=223.3
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.+.||..+....+..+..+. .+.++.+-+.+.+++ +|..|.+++.....++..+ .++.|.+.||+|+|.++++|.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 45677777777777776665 688899999999999 9999999987766777654 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
..+|..+....... .++ +|.+....++.|.+.+..+.+......+++| ++||++.|+.....++|..+-..+...+
T Consensus 102 ~~~~~~~~~~~~~~-~~~--~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 102 AAAVMLFMGFVPWA-TSS--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHCHHH-HSS--SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHhhhhc-ccc--HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998766541100 122 4556666778888889899999999999998 5699999998887777665543322111
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHH
Q 039263 182 YGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLV 261 (492)
Q Consensus 182 f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
. .... +....|. +. ++..++.. .
T Consensus 179 ~--------------------------~~~g-----~w~~~f~----~~---~~~~~~~~-------------------~ 201 (451)
T 1pw4_A 179 M--------------------------AWFN-----DWHAALY----MP---AFCAILVA-------------------L 201 (451)
T ss_dssp H--------------------------HHTC-----CSTTCTH----HH---HHHHHHHH-------------------H
T ss_pred H--------------------------HHhc-----cHHHHHH----HH---HHHHHHHH-------------------H
Confidence 1 0000 0011222 10 00000000 0
Q ss_pred HHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchh
Q 039263 262 LILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSID 341 (492)
Q Consensus 262 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~ 341 (492)
+ .....+++++..+ .++++ +. ..+.+++. ++..+++....+...++.+|+++
T Consensus 202 ~------~~~~~~~~~~~~~----------~~~~~----~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
T 1pw4_A 202 F------AFAMMRDTPQSCG----------LPPIE----EY-----KNDYPDDY---NEKAEQELTAKQIFMQYVLPNKL 253 (451)
T ss_dssp H------HHHHCCCSSTTTC----------CCSCT----TT-----CCC----------------CCTHHHHHHTSSCHH
T ss_pred H------HHhhccCCHhhcC----------CCChh----hh-----cccccccc---hhhhhcccccccchHHHHHcCHH
Confidence 0 0000111110000 00000 00 00000000 00000011112333578899999
Q ss_pred HHHHHHHHHhhccceeEEecchhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHH--hhhcCCCchHHHHHHH
Q 039263 342 MLIIFIATTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEIL--LKKYKIPRPLLFTFVL 418 (492)
Q Consensus 342 FWllf~~~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~--~~~~~~~R~~~l~i~~ 418 (492)
+|.+.+..++.......+......+.++ +|.++.+.+...++.++++.+|++..|.++||+ ++| . .+.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----~-~~~~~~ 327 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----G-ATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----H-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----h-hHHHHH
Confidence 9999887777655444455556666666 678777778888999999999999999999998 433 2 333333
Q ss_pred HHHH-HHHHHHHhcC--Cc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 419 LFSC-VGHPFIAYGI--PN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 419 ~l~~-~~~ll~~~~~--~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
.+.. ++.+++.... .. .+.+...+.|++++..+.....++.|.+..++.|+.+++...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 328 MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 3333 4444433322 12 345666778999999999999999999999989998888644
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-16 Score=160.56 Aligned_cols=317 Identities=11% Similarity=0.024 Sum_probs=199.0
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
.+.++.+-|++++++|+|+.|.+++.....++.. ..++.|.+.||+|+|.++.++.++..++..+.... .+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 4555666788899999999999998666666665 48999999999999999999999998887765543 235
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISF 202 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~ 202 (492)
|.+....++.|.+.+..+++......+++| ++|+++.|+.....++|..+-..+... ..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-l~------------------- 148 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL-LD------------------- 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH-SS-------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HH-------------------
Confidence 666667778888888888888889999997 689999999888777765554332221 11
Q ss_pred hhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
+ ....+..+.+ .++..++.. .+.....||
T Consensus 149 ------~----------~~~~~~~~~~---~~~~~~~~~-------------------------~~~~~~~~~------- 177 (375)
T 2gfp_A 149 ------T----------MWNWRACYLF---LLVLCAGVT-------------------------FSMARWMPE------- 177 (375)
T ss_dssp ------C----------HHHHHHHHHH---HHHHHHHHH-------------------------CCCCCSSCC-------
T ss_pred ------H----------hccHHHHHHH---HHHHHHHHH-------------------------HHHHHHCcc-------
Confidence 1 0011100001 000000000 000000000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
++++ + + + ++ ++..++++.+|++++|.+.+..++.......+...
T Consensus 178 ---------~~~~----~-~---------~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2gfp_A 178 ---------TRPV----D-A---------P---------RT----RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEAC 221 (375)
T ss_dssp ---------CSTT----T-C---------C---------CC----CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCC----C-c---------c---------cc----cHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0 00 01123468899999999888777654443333344
Q ss_pred hhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHh---cCCchh
Q 039263 363 LGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHP--FIAY---GIPNSL 436 (492)
Q Consensus 363 ~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~l--l~~~---~~~~~l 436 (492)
...+.++ +|.++.+.+...++.+++..+|++..|.++||.++ | ....... ....+.. .... .....+
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----L-MWQSVIC-CLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----H-HHHHHHH-HHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHH-HHHHHHHHHHHhhhccccHHHH
Confidence 4444444 56665666777888899999999999999998854 1 1111111 1111111 1111 112234
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHH
Q 039263 437 YAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAY 483 (492)
Q Consensus 437 ~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~ 483 (492)
.+...+.|+++|..+....+.+.|.+. ++.|+..++......+|..
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 567778899999999999999999997 8888888876555444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=141.40 Aligned_cols=370 Identities=12% Similarity=0.069 Sum_probs=196.6
Q ss_pred ccccHHHHHh-----hCCChhhhhHHHHHhhhhcc-ccccceeeecc-CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 039263 49 GLYSSDIKTS-----LGYDQSTLNLLSFSKDVGGN-VGVLSGLINEI-TPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKP 121 (492)
Q Consensus 49 S~ys~~L~~~-----~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~-~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~ 121 (492)
+...+.++++ +|+|..|.+++.....++.. ..+++|++.|| +|+|.++.+|.++..+|..++. ..++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-----~~~~- 107 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-----LPFG- 107 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-----SCCS-
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-----Hhhh-
Confidence 3445556666 99999999998666666665 48899999999 8999999999999988876543 1222
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-C--CCceeeehhHhhhhhHHHHHHHHHHHcC-CChhHHHHHHHHHH
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPE-S--RGSVLGLLKGFVGLSGAILTQLYHAFYG-DNSKALILLIAWLP 197 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~--RG~a~Gi~~a~~GLsa~i~s~i~~~~f~-~~~~~fllfla~~~ 197 (492)
.+.+...-++.|.|.+...++......++||+ + ||.+.++......+|+.+-..+...+.+ .+-..-++..+ ..
T Consensus 108 -~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~-~~ 185 (491)
T 4aps_A 108 -ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA-IG 185 (491)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HH
T ss_pred -HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HH
Confidence 45566666778888888888888889999984 5 5666666656666666555554444332 12222222222 22
Q ss_pred HHHHHhhhhcc-c-ccccc-----cc---chhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhh
Q 039263 198 AAISFVFLRTF-R-IIKIV-----RQ---ANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFL 267 (492)
Q Consensus 198 ~~v~~~~~~~i-~-~~~~~-----~~---~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 267 (492)
.+++++...+. + ..+++ ++ ++..+.++.........++.+... ...+..+.++..... .......
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~ 260 (491)
T 4aps_A 186 MFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM-NLVGWNSLPAYINLL----TIVAIAI 260 (491)
T ss_dssp HHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH-HHHSSCCTTHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH-HhccCcccccchhhh----hHHHHHH
Confidence 22322222222 1 11111 00 111122211000000001111111 111221211111100 0000011
Q ss_pred hhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHH
Q 039263 268 PIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFI 347 (492)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~ 347 (492)
+... ..+.++ +++ ..+ .+.-+...+|.+++
T Consensus 261 ~~~~----~~~~~~----------~~~----------------------------~~~--------~~~~~~~~~~~~~~ 290 (491)
T 4aps_A 261 PVFY----FAWMIS----------SVK----------------------------VTS--------TEHLRVVSYIPLFI 290 (491)
T ss_dssp HHHH----HHHHC----------------------------------------------------------CTTHHHHHH
T ss_pred HHHH----HHHHhh----------ccc----------------------------ccH--------HHHHHHHHHHHHHH
Confidence 1100 000000 000 000 00112222333443
Q ss_pred HHHhhccceeEEecchhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 039263 348 ATTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHP 426 (492)
Q Consensus 348 ~~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~l 426 (492)
..++....-....+......+. .+.+..+.+...++.++...++..+.|.++||++||+ ..+...+.+..+++.++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~-~~~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ-PSSPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHH
Confidence 2222211111222334444443 4554456677788899999999999999999998764 2334444455556666554
Q ss_pred HHHhc----------CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 427 FIAYG----------IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 427 l~~~~----------~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
++... ....+.+...+.|++.+........++.|.+..++-|+..|+..+...+|.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 370 LMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp TTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 33221 223456677788999999999999999999999999998888655444443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-13 Score=140.51 Aligned_cols=135 Identities=10% Similarity=0.023 Sum_probs=82.6
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEe-cchhHHHhh-cCC---CCCccchhhhHHHhhhhhhhcccchhhHHHhhhc
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAI-DNLGQIGSS-LGY---PARSTTTFVSLVSIWNYLGRVVAGFASEILLKKY 406 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i-~n~~~I~~s-lg~---~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~ 406 (492)
+.++.+|++++|.+++..++... ..... .......+. ++. +....+...++..+.+..|++..|+++||++||+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 290 (417)
T 2cfq_A 212 LALELFRQPKLWFLSLYVIGVSC-TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence 45678999999987765433221 11111 112222222 221 1122244556777889999999999999996543
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 407 KIPRPLLFTFVLLFSCVGHPFIAYGIPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 407 ~~~R~~~l~i~~~l~~~~~ll~~~~~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
.+.+..+++.++.+++...... .+.+...+.+++++.........++|.+..++-|+.+++
T Consensus 291 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 291 ------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4444555555554444332222 344445556778877777778899999999888888776
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=123.57 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHhhCcccccccccHHHHHhhC------CChhhhhHHHHHhhhhcc-ccccceeeeccC-CcHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLG------YDQSTLNLLSFSKDVGGN-VGVLSGLINEIT-PPWVVLAI 98 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~------~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~-Gpr~~~~i 98 (492)
+-|...+...+...+... ..+...+.+++++| +|+.+.+++.....++.. ..+++|++.||+ |+|.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 13 QIPYIIASEACERFSFYG--MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp CCTHHHHHHHHHHHHHHH--HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 444544444444433222 22334455788899 999999998666666665 478999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeee---hhHhhhhhHHHH
Q 039263 99 GSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGL---LKGFVGLSGAIL 174 (492)
Q Consensus 99 G~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi---~~a~~GLsa~i~ 174 (492)
+.++..++..++... + .+.|.+....++.|.|.+..+.+......++||+ +||.+.++ ......+|+.+-
T Consensus 91 ~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF-----E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHT-----S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887655432 1 1255566666777888888888888889999985 68877666 445555544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.3e-11 Score=122.81 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=86.8
Q ss_pred ccccccc---HHHHHhhCCC--------hhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHH
Q 039263 46 YMFGLYS---SDIKTSLGYD--------QSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLA 113 (492)
Q Consensus 46 Y~fS~ys---~~L~~~~~~s--------q~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~ 113 (492)
|..++++ +.+++.++.+ .++.+++..+..+|..+ +++.|.+.||+|+|.+++++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 5566666432 22344555566677766 6889999999999999999999988886543321
Q ss_pred HhcCC-----------CCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHH
Q 039263 114 VTGRI-----------PKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 114 ~~g~i-----------~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i 173 (492)
..+.. .+.+++.+.+.=++.|.|.|..++.+.....++.|. +||...++...+..+|..+
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence 11100 012356677777888999999999998999999985 6899888876655444333
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=5.6e-06 Score=84.85 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=99.9
Q ss_pred hcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH
Q 039263 337 LFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF 416 (492)
Q Consensus 337 l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i 416 (492)
.+.+.++.+++..++....-.++..-..++.+++ .++.+.+...++..+...++.+.+|.++||++|| ..+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~ 97 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHH
Confidence 3445555555555443332222333455666677 8888888899999999999999999999999654 36666
Q ss_pred HHHHHHHHHHHHHh----c-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhH
Q 039263 417 VLLFSCVGHPFIAY----G-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPV 480 (492)
Q Consensus 417 ~~~l~~~~~ll~~~----~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~ 480 (492)
..++..++.++... . ....+++.-++.|++.|..+....++++|++..|+-++..++...+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Confidence 77777777766544 3 3446778888999999999999999999999988888877775444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.5e-05 Score=83.14 Aligned_cols=128 Identities=11% Similarity=0.155 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHhhccceeEEecchhHHHh-h-----cCCCCCccchhhhHHHhhhhhhhcccchhhHH-HhhhcCCCchH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQIGS-S-----LGYPARSTTTFVSLVSIWNYLGRVVAGFASEI-LLKKYKIPRPL 412 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~I~~-s-----lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~-~~~~~~~~R~~ 412 (492)
+.+|.++...++....-..+........+ . +|.+..+.+...++..+.+.++++.+|.++|| ++|| .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------P 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------H
Confidence 35677776655543332223333333333 3 78888888889999999999999999999999 7654 4
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCC--ccccccc
Q 039263 413 LFTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKY--YSTLYNF 473 (492)
Q Consensus 413 ~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~--~g~nyg~ 473 (492)
.+.+..++..++.++..... ...+++.-++.|++.|...+..+++++|+|..++ -+..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSI 150 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehH
Confidence 66666777777766655543 4467778888899999999999999999999877 4444444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2e-05 Score=80.51 Aligned_cols=114 Identities=14% Similarity=0.041 Sum_probs=88.7
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHH---HhcC-CchhHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFI---AYGI-PNSLYA 438 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~---~~~~-~~~l~~ 438 (492)
..++.+++|.++.+.+...++..+...++.+.+|.++||++|| ..+.+..++..++.++. ...+ ...+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 4556678899888889999999999999999999999999655 45666677777776655 3333 335677
Q ss_pred HHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 439 ASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 439 ~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
.-++.|++.|..+...+++++|++..|+-+...++...+..+|.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999998887776666544444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.9e-05 Score=76.69 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=87.6
Q ss_pred cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 039263 44 ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQ 122 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~ 122 (492)
..+....|.+.+.+..+.+..+....+....+... ..++++++.||+|+|...+.+.....++...+......... ..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 370 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GI 370 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-HH
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-hH
Confidence 35667788999999999888776655444444443 36788999999999999998988888776665544443322 11
Q ss_pred hHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHH
Q 039263 123 VWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
......+....+.+.++. ..+-....+-||. .|+++.|+..+..-+++.+.+.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~ 426 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426 (491)
T ss_dssp HHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333333332 2233456688996 599999998877777777765544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.9e-05 Score=79.24 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=87.2
Q ss_pred cchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc-CCchhHHH
Q 039263 361 DNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG-IPNSLYAA 439 (492)
Q Consensus 361 ~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~ 439 (492)
.....+.+++|.++.+.+...++..+.+.++++.+|+++||++||+. +.+..++..++.++.... ....+++.
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFMLATLVAVTTSSLTVLIAA 94 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34556777888888888888999999999999999999999976542 223444444444433322 23456777
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 440 SVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 440 ~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
..+.|++.|......+++++|.+..|+.++..+....+..+|.
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 137 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP 137 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998888888655544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.53 E-value=5.1e-05 Score=79.82 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhhccceeEEecchhH-HHhhcC------CCCCccchhhhHHHhhhhhhhcccchhhHHH-hhhcCCCch
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQ-IGSSLG------YPARSTTTFVSLVSIWNYLGRVVAGFASEIL-LKKYKIPRP 411 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~-I~~slg------~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~-~~~~~~~R~ 411 (492)
+.+|.+++..++....-.++...+.. +.+.+| .+..+.+...++..+...++.+.+|.++||+ +||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 45666665554433322222333333 345678 8888888899999999999999999999998 6543
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcc
Q 039263 412 LLFTFVLLFSCVGHPFIAYGI--PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYS 468 (492)
Q Consensus 412 ~~l~i~~~l~~~~~ll~~~~~--~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g 468 (492)
.+.+..++..++.++..... ...+++...+.|++.|......+++++|.|..++-+
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 144 (524)
T 2xut_A 87 -TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS 144 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred -HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence 45556666666665554443 335677788889999999999999999999987764
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=6.5e-05 Score=77.20 Aligned_cols=72 Identities=10% Similarity=-0.100 Sum_probs=52.9
Q ss_pred HHhcchhHHHHHHHHHhhccceeEEecchhHHH-hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhc
Q 039263 335 QALFSIDMLIIFIATTCGVGGTLTAIDNLGQIG-SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKY 406 (492)
Q Consensus 335 ~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~-~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~ 406 (492)
.++|+++||.+...+++....-.++..-..... +.+|.++.+.+..++...+.+.+|++.+|.++||++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~ 74 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 368999999888765543322222233344433 347888888899999999999999999999999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.8 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.01 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.68 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.8e-20 Score=188.86 Aligned_cols=359 Identities=12% Similarity=0.069 Sum_probs=211.9
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.+.||.+++...+....... ...+++..|.++ ++|+|++|++++..+..++..+ .++.|.+.||+|+|.++.+|.++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 34578887766665554443 467888888776 5899999999987777777654 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
..++..+......- .. +++.+.....+.|.+.+..+.++.....++||+ +||++.|+...+.++|+.+-..+....
T Consensus 99 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWA-TS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHCHHH-HS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhhccccchh-hh--hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 88887655432211 11 134566667778888888889999999999985 599999998877777665543222111
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHH
Q 039263 182 YGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLV 261 (492)
Q Consensus 182 f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
.. ..- +....|.....+ ..+.. .
T Consensus 176 ~~----------------------~~~---------~w~~~~~~~~~~-------~~~~~-------------------~ 198 (447)
T d1pw4a_ 176 MA----------------------WFN---------DWHAALYMPAFC-------AILVA-------------------L 198 (447)
T ss_dssp HH----------------------HTC---------CSTTCTHHHHHH-------HHHHH-------------------H
T ss_pred hh----------------------hhh---------cccccchhhhhh-------HHHHH-------------------H
Confidence 00 000 001111100000 00000 0
Q ss_pred HHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchh
Q 039263 262 LILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSID 341 (492)
Q Consensus 262 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~ 341 (492)
+ .+.. .+++++... ..+.++.+ .+.+++.+ +..++.....+...++.++++.
T Consensus 199 ~-~~~~-----~~~~~~~~~-----~~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 250 (447)
T d1pw4a_ 199 F-AFAM-----MRDTPQSCG-----LPPIEEYK--------------NDYPDDYN---EKAEQELTAKQIFMQYVLPNKL 250 (447)
T ss_dssp H-HHHH-----CCCSSTTTC-----CCSCTTTC--------------CC----------------CCTHHHHHHTSSCHH
T ss_pred H-HHHh-----cccchhhcc-----cchhhhhh--------------hhcccchh---hccccccchhhHHHHHHHcCch
Confidence 0 0000 011000000 00000000 00000000 0000111122345678899999
Q ss_pred HHHHHHHHHhhccceeEEecchhHHHh-hcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHH
Q 039263 342 MLIIFIATTCGVGGTLTAIDNLGQIGS-SLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLF 420 (492)
Q Consensus 342 FWllf~~~~~~~g~Gl~~i~n~~~I~~-slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l 420 (492)
+|.+....++.......+......+.+ ..+.+..+.+...++..+.+..|+++.|+++||+.|++ |.....+...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~ 327 (447)
T d1pw4a_ 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---RGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC---HHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc---cccccchhHHH
Confidence 999888776654443333333333333 35666667778889999999999999999999997653 22222222223
Q ss_pred HHHHHHHHHhcCC---chhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccce
Q 039263 421 SCVGHPFIAYGIP---NSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGA 475 (492)
Q Consensus 421 ~~~~~ll~~~~~~---~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~ 475 (492)
..++.+++..... ....+...+.|++.++........+.|.+..++.|+-.|+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 385 (447)
T d1pw4a_ 328 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 385 (447)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3333222222211 134556667799999999999999999999988888877753
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=3.5e-13 Score=132.21 Aligned_cols=338 Identities=9% Similarity=0.020 Sum_probs=176.5
Q ss_pred ccchHHHHHHHHHHHHhhCcccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMN 103 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~ 103 (492)
.+|.|...+.-.+..+..|.. ++.+...+++++|+|.+|++++.....++.. ..++.|.+.||+|+|.+++++.+..
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~--~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAY--FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 456676666666555555543 4556666899999999999998666666665 4899999999999999998888877
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC---CCCceeeehhHhhhhhHHHHHHHHHH
Q 039263 104 FFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE---SRGSVLGLLKGFVGLSGAILTQLYHA 180 (492)
Q Consensus 104 ~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~---~RG~a~Gi~~a~~GLsa~i~s~i~~~ 180 (492)
.++..+......... ..+.......+++.+.+....+.........++ +|+...+......+.+..+-
T Consensus 84 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 154 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPL---LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG------ 154 (417)
T ss_dssp HHTHHHHHHHTHHHH---HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhhhhhh---HHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccc------
Confidence 777655443321110 011112233344544455444444444433332 34444444333333322222
Q ss_pred HcCCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHH
Q 039263 181 FYGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASL 260 (492)
Q Consensus 181 ~f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~ 260 (492)
|.+...+. . ......+...... ..+...+
T Consensus 155 ----------------~~~~~~l~----~-------~~~~~~~~~~~~~------~~~~~~~------------------ 183 (417)
T d1pv7a_ 155 ----------------ASIVGIMF----T-------INNQFVFWLGSGC------ALILAVL------------------ 183 (417)
T ss_dssp ----------------HHHHHHHH----H-------HCHHHHHHHHHHH------HHHHHHH------------------
T ss_pred ----------------cccccccc----c-------ccccccccchhhH------HHHHHHH------------------
Confidence 11111111 0 0001111100000 0000000
Q ss_pred HHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcch
Q 039263 261 VLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSI 340 (492)
Q Consensus 261 ~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~ 340 (492)
.. ... ++ ++++.. .++++ +++.+........+..+.+
T Consensus 184 ~~--~~~------~~----------------~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~~~ 220 (417)
T d1pv7a_ 184 LF--FAK------TD----------------APSSAT-----------VANAV--------GANHSAFSLKLALELFRQP 220 (417)
T ss_dssp HH--SSC------CC----------------SCSSSC-----------SSHHH--------HSCCCCCCHHHHHHHTTSS
T ss_pred HH--HHh------cc----------------cccchh-----------hhhhh--------hhhcccccccccccccccc
Confidence 00 000 00 000000 00000 0001111123445566666
Q ss_pred hHHHHHHHHHhhccceeEEecchhHHHhhcCC----CCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH
Q 039263 341 DMLIIFIATTCGVGGTLTAIDNLGQIGSSLGY----PARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF 416 (492)
Q Consensus 341 ~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~----~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i 416 (492)
..|.++.......................... +........+...+....++...|.+.||.++ ...+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~~~~ 294 (417)
T d1pv7a_ 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG------KNALLL 294 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH------HHHHHH
T ss_pred cccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccc------ccchhh
Confidence 66666554444332221111111111111111 11222345567777888889999999998844 345666
Q ss_pred HHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 417 VLLFSCVGHPFIAYGIPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 417 ~~~l~~~~~ll~~~~~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
..+++.++.+++...+.. .+++..++.|+++|..+....+++.|.+..++.++.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (417)
T d1pv7a_ 295 AGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred hHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence 666666666655544433 456777788999999999999999999999988887775
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=3e-06 Score=83.82 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=89.3
Q ss_pred chhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh-----cCCchh
Q 039263 362 NLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAY-----GIPNSL 436 (492)
Q Consensus 362 n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~-----~~~~~l 436 (492)
.+.+.-+++|.++.+.+...+++++...+|.+.+|.++||++|| ..+.+..++..++.++... .....+
T Consensus 46 ~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGLILAAAVMLFMGFVPWATSSIAVM 119 (447)
T ss_dssp HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHCHHHHSSSSHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHhhccccchhhhhHHHH
Confidence 33444456889989999999999999999999999999999655 3555666666666554432 234567
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 437 YAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 437 ~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
++.-.+.|++.|..+...+++++|+|..|+-++..++...+..+|.
T Consensus 120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 165 (447)
T d1pw4a_ 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 165 (447)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh
Confidence 7788888999999999999999999999988888887655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=8.8e-06 Score=78.10 Aligned_cols=143 Identities=8% Similarity=0.048 Sum_probs=89.8
Q ss_pred ChhhhhHHHHHhhhhc-cccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccch
Q 039263 62 DQSTLNLLSFSKDVGG-NVGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFA 140 (492)
Q Consensus 62 sq~~l~~is~~~~vg~-~~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~ 140 (492)
+..+.........++. ......|++.||.|+|.++.++.++..+++.++. ..+ +.|.+.....+.|.+.+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~l~g~~~~~~ 329 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-----FAT--SALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-----TCC--CHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc-----ccc--ccchhhHHHHHHHHHHHHH
Confidence 3344444433333333 3478899999999999999999988887765433 222 2455666666777788888
Q ss_pred hhhhhhhhhhhcCC-CCCceeeehhH-hhhhhHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHhhhhccccc
Q 039263 141 NTGALVTCVKNFPE-SRGSVLGLLKG-FVGLSGAILTQLYHAFYGD-NSKALILLIAWLPAAISFVFLRTFRII 211 (492)
Q Consensus 141 ~~a~l~t~~k~FP~-~RG~a~Gi~~a-~~GLsa~i~s~i~~~~f~~-~~~~fllfla~~~~~v~~~~~~~i~~~ 211 (492)
++.......+.+|+ +||++.|+..+ ..++|+.+-..+.....+. +...-+++.++...+..++..+.+|..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 88888888999986 58999997543 3445555554444333321 233334445555555555666666544
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