Citrus Sinensis ID: 039281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQIPHASSII
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHccc
Coil and Loop (DISEMBL)
MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFlkdlhdvdgdkefGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARtvdlssntstfsFYMFIWKASDCTYilnqiphassii
Flexible Loop (DISEMBL)
MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIEtlsvklgkeRVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQIPHASSII
Low Complexity Region (SEG)
MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYgaavvvgasssillsklltiisHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQIPHASSII
Disordered region (IsUnstruct)
******LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQI*******
Disordered Region (DISOPRED)
*LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQIPHASSII
Disordered Region (DISEMBL)
MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQIPHASSII
Disordered Region (DISPRO)
*LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQIPHASSII
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYILNQIPHASSII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.806	0.338	0.496	4e-34
B7FA90	404	Probable homogentisate ph	no	no	0.921	0.376	0.392	8e-33
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.806	0.324	0.466	7e-32
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.769	0.310	0.448	4e-28
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.896	0.383	0.307	4e-11
Q0D576	379	Probable homogentisate ph	no	no	0.896	0.390	0.274	9e-08
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.333	0.2	0.327	0.0002

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 94/133 (70%)

Query: 23  VQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
           +Q +V GRP+  TR L+FAT F+  F +  A  KD+ D++GDK FGI + SV LG++RVF
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query: 83  WLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFY 142
           W CV +L +AY  A++VGA+S  + SK+++++ H ILA++LW RA++VDLSS T   S Y
Sbjct: 316 WTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCY 375

Query: 143 MFIWKASDCTYIL 155
           MFIWK     Y+L
Sbjct: 376 MFIWKLFYAEYLL 388

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  139 bits (350), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 108/186 (58%), Gaps = 34/186 (18%)

Query: 4   SPPLVLGVIVWFLFGTAYSV----------------------------------QKYVLG 29
           S PL L + + F+ GTAYS+                                  Q +V  
Sbjct: 214 SQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFR 273

Query: 30  RPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYML 89
           RP   TR L+FAT F+  F +  A  KD+ D++GD+ FGI++ SV+LG+++VFW+CV +L
Sbjct: 274 RPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLL 333

Query: 90  SIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKAS 149
            +AY  A+++GA+S+ L SK  T++ H ILA+ LW R+R++DL+S T+  SFYMFIWK  
Sbjct: 334 EMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKLF 393

Query: 150 DCTYIL 155
              Y+L
Sbjct: 394 YAEYLL 399

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 90/133 (67%)

Query: 23  VQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
           +Q  V  RP    R L+F T  +  + I  A  KD+ D++GD++FGI++LS++LG +RVF
Sbjct: 273 MQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVF 332

Query: 83  WLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFY 142
           W+CV +L + YG  ++VGA+S IL SK++T++ H +LAS LW  A++VDL+SN    SFY
Sbjct: 333 WICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFY 392

Query: 143 MFIWKASDCTYIL 155
           MFIWK     Y L
Sbjct: 393 MFIWKLHTAEYFL 405

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  123 bits (309), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/127 (44%), Positives = 84/127 (66%)

Query: 21  YSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKER 80
           + +Q  VL RP+   RSL F   F+  + +  A  KD+ DV+GDKE GI++ +V+LG++R
Sbjct: 270 HHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKR 329

Query: 81  VFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFS 140
            FW+CV    +A+G  ++ GAS S   +K+ T + + +LAS LW +A++VDLS   ST S
Sbjct: 330 AFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGS 389

Query: 141 FYMFIWK 147
           FYMFIWK
Sbjct: 390 FYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 5/153 (3%)

Query: 7   LVLGVIVWFL--FGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGD 64
           L++  +  FL  FG  Y   +  LG P + +  + F T F+  F +  A  KDL DV+GD
Sbjct: 231 LIIATVRGFLLNFGV-YHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGD 289

Query: 65  KEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLW 124
           ++F I TL+ KLG   + +L   +L + Y +A+ +      +    L I +H ILAS L 
Sbjct: 290 RKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLI 349

Query: 125 LRARTVDLSSNTSTF--SFYMFIWKASDCTYIL 155
            +   ++ ++ T      +Y FIW      Y+L
Sbjct: 350 FQTWVLEKANYTKEAISGYYRFIWNLFYAEYLL 382

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 7   LVLGVIVWFL--FGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGD 64
           L++  +  FL  FG  Y+ +   LG   + +  + F T F+  F +  A  KDL DV+GD
Sbjct: 224 LIIATVRGFLLNFGVYYATRA-ALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGD 282

Query: 65  KEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLW 124
           +++ I TL+ KLG   + +L   +L   Y AA+ V         + + +  H  LA  + 
Sbjct: 283 RKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGII 342

Query: 125 LRARTVDLSSNT--STFSFYMFIWKASDCTYIL 155
            +   ++ +  T  +   +Y FIW      YI 
Sbjct: 343 FQTWVLEQAKYTKDAISQYYRFIWNLFYAEYIF 375

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 35/55 (63%)

Query: 37  SLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI 91
           + +  T++I  F ++  F+K + D++GDK  G+ TL+VKLG++  + +   +L I
Sbjct: 155 NFIIPTIYIFFFTLSREFVKGIEDIEGDKRNGVNTLAVKLGEKSTWIIAKIILGI 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
224143266	284	predicted protein [Populus trichocarpa]	0.757	0.440	0.64	2e-39
296082088	398	unnamed protein product [Vitis vinifera]	0.957	0.396	0.442	2e-38
295656253	401	homogentisate geranylgeranyl transferase	0.939	0.386	0.470	3e-38
374461300	239	aromatic prenyltransferase, partial [Epi	0.957	0.661	0.432	6e-38
171190284	317	homogentisate geranylgeranyl transferase	0.939	0.488	0.486	3e-37
359476155	397	PREDICTED: probable homogentisate phytyl	0.939	0.390	0.444	5e-37
295656255	189	homogentisate geranylgeranyl transferase	0.830	0.724	0.485	4e-35
295656261	184	homogentisate geranylgeranyl transferase	0.818	0.733	0.485	1e-34
219842170	411	homogentisate geranylgeranyl transferase	0.927	0.372	0.444	2e-34
374461278	407	aromatic prenyltransferase [Epimedium ac	0.806	0.326	0.511	6e-34

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/125 (64%), Positives = 98/125 (78%)

Query: 23  VQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
           +QK+VLG+   +TRSL+FAT F+C F    A  KD+ DVDGD+++GI++ SV LG+ERVF
Sbjct: 160 MQKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVF 219

Query: 83  WLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFY 142
           WLCV ML IAYGAAVVVGASS+ L SK +TI+ HC LA  LWLRAR+VDL+S  S  SFY
Sbjct: 220 WLCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFY 279

Query: 143 MFIWK 147
           MFIWK
Sbjct: 280 MFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 116/192 (60%), Gaps = 34/192 (17%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSV----------------------------------QKY 26
           M +SPPL   +++ FL GTAYS+                                  QK+
Sbjct: 180 MFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKH 239

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGR +  T+S++F   F+C F    A  KD+ DVDGD+EFGI++ +VKLG+++VFWLCV
Sbjct: 240 VLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCV 299

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
            ML +AYGAA V+GASSS +  K  T+  HC LA  LW+RA++VDLSS  +  SFYMFIW
Sbjct: 300 NMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIW 359

Query: 147 KASDCTYILNQI 158
           KAS+   I +++
Sbjct: 360 KASESISIYHRV 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/189 (47%), Positives = 115/189 (60%), Gaps = 34/189 (17%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSV----------------------------------QKY 26
           + +SPP+   +++ FLFG+AYSV                                  QKY
Sbjct: 208 VFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKY 267

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGRP+   RSL FATV I  F    A  KD+ DVDGD++FGI++ SV LG++RVFWLC+
Sbjct: 268 VLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCI 327

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
            +L IAY +A+V+GASSS LLSKL+T+I HC LAS LW RA +V+L  N+S  SFYM IW
Sbjct: 328 GILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIW 387

Query: 147 KASDCTYIL 155
           K     Y+L
Sbjct: 388 KLFYAEYLL 396

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 116/192 (60%), Gaps = 34/192 (17%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYS----------------------------------VQKY 26
           M +SPPL+  ++  FL  TAYS                                  +QKY
Sbjct: 38  MFKSPPLLYSILTVFLLATAYSLHLPFLRWKKSAVLTSVCIISVRALVIPLGFFLHMQKY 97

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGRP  IT+ +MFA  F+       A +KD+ DVDGD+ FG+++L+++LGKE+VFWL V
Sbjct: 98  VLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGLQSLTIRLGKEKVFWLGV 157

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
             L +AYG AV+VGASS+++ +K++T++ HCILAS LW RARTV +S   ST SFY+F+W
Sbjct: 158 STLLMAYGTAVIVGASSTLMSNKIITVLGHCILASILWTRARTVVISEPASTLSFYLFVW 217

Query: 147 KASDCTYILNQI 158
           K     Y+L+ I
Sbjct: 218 KLLYAEYLLDPI 229

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 119/189 (62%), Gaps = 34/189 (17%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSV----------------------------------QKY 26
           M +SPP++  ++V F FGTAYS+                                  Q+Y
Sbjct: 124 MFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQY 183

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGRPV  +RSL FA + +  F    A  KD+ DVDGD++FGI+T++V LGK+RVFWLC+
Sbjct: 184 VLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCI 243

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
            +L IAYG+AVV+G+SSS+LLSKL+T+  HCILAS LW RA +VDL SN S  SFYMFIW
Sbjct: 244 TILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIW 303

Query: 147 KASDCTYIL 155
           K     Y+L
Sbjct: 304 KLFYAEYLL 312

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 111/189 (58%), Gaps = 34/189 (17%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSV----------------------------------QKY 26
           M +SPPL   +++ FL GTAYS+                                  QK+
Sbjct: 204 MFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKH 263

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGR +  T+S++F   F+C F    A  KD+ DVDGD+EFGI++ +VKLG+++VFWLCV
Sbjct: 264 VLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCV 323

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
            ML +AYGAA V+GASSS +  K  T+  HC LA  LW+RA++VDLSS  +  SFYMFIW
Sbjct: 324 NMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIW 383

Query: 147 KASDCTYIL 155
           K     Y L
Sbjct: 384 KLFYAEYFL 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656255|gb|ADG26668.1| homogentisate geranylgeranyl transferase, partial [Daucus carota]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 108/171 (63%), Gaps = 34/171 (19%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSV----------------------------------QKY 26
           M +SPP++  ++V F FGTAYS+                                  Q+Y
Sbjct: 16  MFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKRNAFLAAMCIVIVRAITVQLTVFYHIQQY 75

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGRPV  +RSL FA + +  F    A  KD+ DVDGD++FGI+T++V LGK+RVFWLC+
Sbjct: 76  VLGRPVLFSRSLAFAILCMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCI 135

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTS 137
            +L IAYG+AVV+GASSSILLSKL+T+  HCILAS LW RA +VDL S+ S
Sbjct: 136 TILLIAYGSAVVIGASSSILLSKLVTVTGHCILASILWSRALSVDLESSKS 186

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656261|gb|ADG26671.1| homogentisate geranylgeranyl transferase, partial [Carum carvi]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 106/169 (62%), Gaps = 34/169 (20%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSV----------------------------------QKY 26
           M +SPP++  ++V F FGTAYS+                                  Q+Y
Sbjct: 16  MFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKRNAFLAAMCIVIVRAITVQLTVFYHIQQY 75

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGRPV  +RSL FA + +  F    A  KD+ DVDGD++FGI+T++V LGK+RVFWLC+
Sbjct: 76  VLGRPVLFSRSLAFAILCMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCI 135

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSN 135
            +L IAYG+AVV+GASSSILLSKL+T+  HCILAS LW RA +VDL S 
Sbjct: 136 TILLIAYGSAVVIGASSSILLSKLVTVTGHCILASILWSRALSVDLESR 184

Source: Carum carvi

Species: Carum carvi

Genus: Carum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 112/189 (59%), Gaps = 36/189 (19%)

Query: 3   RSPPLVLGVIVWFLFGTAYSV----------------------------------QKYVL 28
           +SPPL+  +++ F  G+ YS+                                  QK+VL
Sbjct: 218 QSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVL 277

Query: 29  GRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYM 88
           G+ + I RSLMFAT F+C F  A A  KD+ DV+GD+++GI++ SV LG+ERV WLCV M
Sbjct: 278 GKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNM 337

Query: 89  LSIAYGAAVVVGAS--SSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
           L +AYGAAVV GAS  SS+L  KL+T+I H  +A  LW++A+ VDL+S  S  SFYMFIW
Sbjct: 338 LLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIW 397

Query: 147 KASDCTYIL 155
           K     Y L
Sbjct: 398 KLFYAEYFL 406

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 97/133 (72%)

Query: 23  VQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
           +Q +V  RP  +TR L+FAT F+  F +  A  KD+ D++GD  FGI + +V+LG++RVF
Sbjct: 270 IQTFVYRRPAILTRPLIFATAFMSFFSVVIALFKDIPDIEGDAIFGIRSFTVRLGQKRVF 329

Query: 83  WLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFY 142
           W+CVY+L +AYG AV+VGA+S   LSKL+T++ H +LAS LWL A++VDL++ T+  SFY
Sbjct: 330 WICVYLLEMAYGVAVLVGAASPSPLSKLVTVLGHVVLASILWLNAKSVDLTNKTAITSFY 389

Query: 143 MFIWKASDCTYIL 155
           MFIWK     Y+L
Sbjct: 390 MFIWKLFYAEYLL 402

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.884	0.371	0.425	9.4e-27
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.939	0.380	0.367	9.4e-24
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.896	0.360	0.371	1e-23
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.896	0.376	0.287	1.6e-11

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 63/148 (42%), Positives = 83/148 (56%)

Query:     8 VLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEF 67
             V  +IV   F     +Q +V GRP+  TR L+FAT F+  F +  A  KD+ D++GDK F
Sbjct:   243 VRAIIVQIAF--YLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIF 300

Query:    68 GIETLSVKLGKERVFWLCVYMLSIAYXXXXXXXXXXXXXXXXXXXXXXHCILASSLWLRA 127
             GI + SV LG++RVFW CV +L +AY                      H ILA++LW RA
Sbjct:   301 GIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARA 360

Query:   128 RTVDLSSNTSTFSFYMFIWKASDCTYIL 155
             ++VDLSS T   S YMFIWK     Y+L
Sbjct:   361 KSVDLSSKTEITSCYMFIWKLFYAEYLL 388

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 273 (101.2 bits), Expect = 9.4e-24, P = 9.4e-24
 Identities = 57/155 (36%), Positives = 80/155 (51%)

Query:     1 MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHD 60
             +L +   +  V V    G    +Q  V  RP    R L+F T  +  + I  A  KD+ D
Sbjct:   248 VLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPD 307

Query:    61 VDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYXXXXXXXXXXXXXXXXXXXXXXHCILA 120
             ++GD++FGI++LS++LG +RVFW+CV +L +AY                      H ILA
Sbjct:   308 MEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLGHAILA 367

Query:   121 SSLWLRARTVDLSSNTSTFSFYMFIWKASDCTYIL 155
             S LW  A++ DL+SN    SFYMFIWK     Y L
Sbjct:   368 SVLWYHAKSTDLTSNVVLQSFYMFIWKLHTAEYCL 402

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 273 (101.2 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 55/148 (37%), Positives = 77/148 (52%)

Query:     8 VLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEF 67
             +  V V    G    +Q  V  RP    R L+F T  +  + I  A  KD+ D++GD++F
Sbjct:   258 IADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKF 317

Query:    68 GIETLSVKLGKERVFWLCVYMLSIAYXXXXXXXXXXXXXXXXXXXXXXHCILASSLWLRA 127
             GI++LS++LG +RVFW+CV +L + Y                      H +LAS LW  A
Sbjct:   318 GIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHA 377

Query:   128 RTVDLSSNTSTFSFYMFIWKASDCTYIL 155
             ++VDL+SN    SFYMFIWK     Y L
Sbjct:   378 KSVDLTSNVVLHSFYMFIWKLHTAEYFL 405

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 44/153 (28%), Positives = 69/153 (45%)

Query:     7 LVLGVIVWFL--FGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGD 64
             L++  +  FL  FG  Y   +  LG P + +  + F T F+  F +  A  KDL DV+GD
Sbjct:   238 LIIATVRGFLLNFGV-YHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGD 296

Query:    65 KEFGIETLSVKLGKERVFWLCVYMLSIAYXXXXXXXXXXXXXXXXXXXXXXHCILASSLW 124
             ++F I TL+ KLG   + +L   +L + Y                      H ILAS L 
Sbjct:   297 RKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLI 356

Query:   125 LRARTVDLSSNT--STFSFYMFIWKASDCTYIL 155
              +   ++ ++ T  +   +Y FIW      Y+L
Sbjct:   357 FQTWVLEKANYTKEAISGYYRFIWNLFYAEYLL 389


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.141   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       143   0.00091  102 3  11 21  0.46    30
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  146 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.51u 0.11s 11.62t   Elapsed:  00:00:02
  Total cpu time:  11.51u 0.11s 11.62t   Elapsed:  00:00:02
  Start:  Fri May 10 18:22:52 2013   End:  Fri May 10 18:22:54 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	2e-54
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-27
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	5e-06
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	5e-04
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	0.002
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	0.003
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	0.003
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	0.004

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  172 bits (438), Expect = 2e-54
 Identities = 85/189 (44%), Positives = 112/189 (59%), Gaps = 34/189 (17%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSV----------------------------------QKY 26
           ++ S PL   + V F+ GTAYS+                                  Q +
Sbjct: 87  IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH 146

Query: 27  VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
           VLGRP   TR L+FAT F+C F +  A  KD+ DV+GD+ FGI + SV+LG++RVFWLCV
Sbjct: 147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV 206

Query: 87  YMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
            +L +AY AA++VGASSS L SK++T++ H ILAS LW RA++VDLSS  +  SFYMFIW
Sbjct: 207 NLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW 266

Query: 147 KASDCTYIL 155
           K     Y L
Sbjct: 267 KLFYAEYFL 275

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  103 bits (259), Expect = 2e-27
 Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 11/144 (7%)

Query: 8   VLGVIV----WFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDG 63
           V GVIV    +  F       +++LG  V I  ++   T+F+  F  A A  KD+ D++G
Sbjct: 157 VRGVIVNLGLFLHF-------QWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEG 209

Query: 64  DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSL 123
           D+++ I T +++LGK+ VF L  ++L+  Y   + VG  S   ++    I+SH IL + L
Sbjct: 210 DRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALL 269

Query: 124 WLRARTVDLSSNTSTFSFYMFIWK 147
           W R++ VDL    +   FY FIWK
Sbjct: 270 WWRSQRVDLQDKQAIAQFYQFIWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 27/172 (15%)

Query: 1   MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPV-----------------------EITRS 37
           +L  P L+L  ++  L G  YS    +  RP+                       +I   
Sbjct: 88  LLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSP 147

Query: 38  LMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAV 97
           L+   + +    +A     D+ DV+GD++ GI TL V+LG++R   L      +   AA+
Sbjct: 148 LLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYA----LLLAAAL 203

Query: 98  VVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKAS 149
           ++     +LL+ LL +++  +LA +L + AR +   +       ++FI    
Sbjct: 204 LLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALLF 255

Length = 259

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 4   SPPLVLGVIVW---FLFGTAYSVQKYVLGRPV--EITRSLMFATVFICCFCIASAFLKDL 58
           +PPL L    W   F  G +Y    +  G  +  E+   +   T+      +  A + D 
Sbjct: 146 APPLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDF 205

Query: 59  HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYG 94
             V+GD+  G+++L V  G E   W+CV  + I  G
Sbjct: 206 KSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQG 241

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 26  YVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLC 85
            V    + I   L+   VFI         + D+ D++GD++ G++TL + LGKER     
Sbjct: 151 GVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFL 210

Query: 86  VYMLSIAYGAAVVVGASSSILLSKLLTII 114
             +L++ +   +++G  + +L   LL ++
Sbjct: 211 -LILNLLFLILLILGVYTGLLPLLLLVLL 238

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 18/107 (16%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 40  FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVV 99
              +    + +    +  + D++GD++ G+++L V  G ++   L + +L +A    V++
Sbjct: 171 LLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLL 229

Query: 100 GASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146
           G  + +L      ++   + A  L  +   VD+    + F+ +    
Sbjct: 230 GLLAGLLGLIY--LLGLLVAALLLLYQILIVDVRDPPACFALFDVNL 274

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 53  AFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIA 92
             L D   V+GD++ G+ +L V +G +R   + V  +++ 
Sbjct: 178 MTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVF 217

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 4   SPPLVLGVIVW---FLFGTAYSVQKYVLGRPV--EITRSLMFATVFICCFCIASAFLKDL 58
           +PPL L    W   +  G +Y    +  G+ +   +T  ++  T+      +  A + D 
Sbjct: 215 APPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDF 274

Query: 59  HDVDGDKEFGIETLSVKLGKERVFWLCV 86
             ++GD+  G+++L V  G E   W+CV
Sbjct: 275 KSIEGDRALGLQSLPVAFGVETAKWICV 302

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK13105	282	ubiA prenyltransferase; Reviewed	99.65
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.63
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.62
PRK12872	285	ubiA prenyltransferase; Reviewed	99.62
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.6
PRK05951	296	ubiA prenyltransferase; Reviewed	99.6
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.59
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.58
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.57
PRK13591	307	ubiA prenyltransferase; Provisional	99.56
PLN02922	315	prenyltransferase	99.55
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.54
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.5
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.49
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.46
PRK12884	279	ubiA prenyltransferase; Reviewed	99.45
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.45
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.43
PLN00012	375	chlorophyll synthetase; Provisional	99.42
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.4
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.38
PRK13595	292	ubiA prenyltransferase; Provisional	99.38
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.36
PRK12882	276	ubiA prenyltransferase; Reviewed	99.35
PRK12888	284	ubiA prenyltransferase; Reviewed	99.34
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.26
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.26
PRK12895	286	ubiA prenyltransferase; Reviewed	99.24
PRK12871	297	ubiA prenyltransferase; Reviewed	99.23
PRK13106	300	ubiA prenyltransferase; Reviewed	99.23
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.19
PRK12875	282	ubiA prenyltransferase; Reviewed	99.17
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.13
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.12
PRK12886	291	ubiA prenyltransferase; Reviewed	99.11
PRK12876	300	ubiA prenyltransferase; Reviewed	99.1
PRK12874	291	ubiA prenyltransferase; Reviewed	99.04
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.04
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	98.81
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	98.7
PRK13592	299	ubiA prenyltransferase; Provisional	98.67
PRK12873	294	ubiA prenyltransferase; Reviewed	98.63
PRK04375	296	protoheme IX farnesyltransferase; Provisional	98.3
PRK13362	306	protoheme IX farnesyltransferase; Provisional	98.01
KOG4581	359	consensus Predicted membrane protein [Function unk	97.28
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	94.58
PRK12884	279	ubiA prenyltransferase; Reviewed	94.15
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	93.79
PRK13595	292	ubiA prenyltransferase; Provisional	93.5
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	91.49
PRK12882	276	ubiA prenyltransferase; Reviewed	91.47
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	90.53
PRK12872	285	ubiA prenyltransferase; Reviewed	89.72
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.58
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	89.47
PLN02776	341	prenyltransferase	89.4
PRK05951	296	ubiA prenyltransferase; Reviewed	89.23
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	88.93
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	88.9
PRK12875	282	ubiA prenyltransferase; Reviewed	88.54
PLN00012	375	chlorophyll synthetase; Provisional	88.26
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	88.12
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	87.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	87.62
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	86.73
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	85.74
PRK04375	296	protoheme IX farnesyltransferase; Provisional	85.54
PRK12392	331	bacteriochlorophyll c synthase; Provisional	84.91
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	84.86
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	83.71
PRK12888	284	ubiA prenyltransferase; Reviewed	83.2
PRK13362	306	protoheme IX farnesyltransferase; Provisional	81.95
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	81.94

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3.7e-51  Score=350.30  Aligned_cols=158  Identities=54%  Similarity=0.931  Sum_probs=151.0

Q ss_pred             ccchHHHHHHHHHHHHHHHhhh----------------------------------hhhhhccccchhHHHHHHHHHHHH
Q 039281            2 LRSPPLVLGVIVWFLFGTAYSV----------------------------------QKYVLGRPVEITRSLMFATVFICC   47 (165)
Q Consensus         2 ~~s~pLl~~~~~slllgtaYS~----------------------------------~~~vlg~~~~~~~~~~~~~~f~~~   47 (165)
                      .|++|+++++..|+++|++||.                                  +++++|+|..+++++++.+.|+++
T Consensus        88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~  167 (280)
T PLN02878         88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF  167 (280)
T ss_pred             HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence            4678999999999999999995                                  244568888899999999999999


Q ss_pred             HHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281           48 FCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRA  127 (165)
Q Consensus        48 f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra  127 (165)
                      |+.++|++||+||+||||++|+||+|+++|+|+++++|..++.+||++++.+|++++..+++++|+.||++++..+|+|+
T Consensus       168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs  247 (280)
T PLN02878        168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA  247 (280)
T ss_pred             HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039281          128 RTVDLSSNTSTFSFYMFIWKASDCTYILNQIP  159 (165)
Q Consensus       128 ~~vdl~sk~~i~sfY~fIWkLFy~EYll~P~~  159 (165)
                      |+||++||++++|||||||||||+||+++|++
T Consensus       248 ~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~  279 (280)
T PLN02878        248 QSVDLSSKAAITSFYMFIWKLFYAEYFLIPLV  279 (280)
T ss_pred             HhcCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999985

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.3e-44  Score=311.94  Aligned_cols=160  Identities=35%  Similarity=0.592  Sum_probs=148.4

Q ss_pred             cchHHHHHHHHHHHHHHHhhhh---------------------h----------hhhccccchhHHHHHHHHHHHHHHHH
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQ---------------------K----------YVLGRPVEITRSLMFATVFICCFCIA   51 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~---------------------~----------~vlg~~~~~~~~~~~~~~f~~~f~~~   51 (165)
                      .||++++.+.+++++|++||.+                     .          ...+++..+++++++.++++++++.+
T Consensus       118 ~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (308)
T PRK12887        118 LGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFA  197 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH
Confidence            4788999999999999999951                     0          01233446778889999999999999


Q ss_pred             HHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 039281           52 SAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVD  131 (165)
Q Consensus        52 i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vd  131 (165)
                      ++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+.+++.++.+...+++..++.||++++..+|+|++++|
T Consensus       198 ~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (308)
T PRK12887        198 IAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVD  277 (308)
T ss_pred             HHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281          132 LSSNTSTFSFYMFIWKASDCTYILNQIPHAS  162 (165)
Q Consensus       132 l~sk~~i~sfY~fIWkLFy~EYll~P~~~~~  162 (165)
                      ++||+||+|||||||||||+||+++|++|++
T Consensus       278 ~~~~~~~~~~y~~iw~l~~~ey~~~~~~~~~  308 (308)
T PRK12887        278 LQDKQAIAQFYQFIWKLFFLEYLLFPIACLL  308 (308)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999984

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.65  E-value=4.4e-15  Score=127.62  Aligned_cols=98  Identities=23%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhh---------------------hhhcc---ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQK---------------------YVLGR---PVEITRSLMFATVFICCFCIASAFLKDL   58 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~~---------------------~vlg~---~~~~~~~~~~~~~f~~~f~~~i~i~KDi   58 (165)
                      ++|+.+....++++++..||.+.                     .++|.   ...++++.++....+.+++.+++++||+
T Consensus       103 ~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~i  182 (282)
T PRK13105        103 GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAV  182 (282)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46788888889999999999832                     12222   2335666788888889999999999999


Q ss_pred             CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281           59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVG  100 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g  100 (165)
                      ||+||||+.|+||+|+|+|+|++.+++..+..++++..+..+
T Consensus       183 rDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        183 QDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             cchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888544

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.63  E-value=2.3e-14  Score=121.59  Aligned_cols=100  Identities=21%  Similarity=0.274  Sum_probs=84.8

Q ss_pred             chHHHHHHHHHHHHHHHhhhhh--------------------hhhc----cccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQK--------------------YVLG----RPVEITRSLMFATVFICCFCIASAFLKDLH   59 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~~--------------------~vlg----~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~   59 (165)
                      +|++++...++.+++.+||.+.                    .+.|    .....+.+.++.+.+.++++..+.+.||+|
T Consensus       112 ~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~  191 (293)
T PRK06080        112 GWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIR  191 (293)
T ss_pred             hHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6778888889999999999821                    1111    123456778889999999999999999999


Q ss_pred             ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039281           60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS  103 (165)
Q Consensus        60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~  103 (165)
                      |+||||+.|+||+|+++|+|++.+++..+...+|+..+......
T Consensus       192 D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        192 DIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             cchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999888776665

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.62  E-value=1.9e-14  Score=123.44  Aligned_cols=147  Identities=13%  Similarity=0.090  Sum_probs=106.5

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhh--------------------hhhc----cccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQK--------------------YVLG----RPVEITRSLMFATVFICCFCIASAFLKDL   58 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~~--------------------~vlg----~~~~~~~~~~~~~~f~~~f~~~i~i~KDi   58 (165)
                      .+|+++..+.+++++|..||.+.                    .+.|    ++..++++.+..+..+++.+.++...||+
T Consensus       104 ~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~  183 (285)
T TIGR02235       104 WQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFSLIPWKASILVGLATTLILFCSHF  183 (285)
T ss_pred             hhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46999999999999999999731                    1122    14567888899999999999999999999


Q ss_pred             CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCchh
Q 039281           59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTV--DLSSNT  136 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~v--dl~sk~  136 (165)
                      ||+|.||+.|+||+|+|+|+|++.+++..++..+|+..+........+|...+    -.+..+..+...|++  +.++++
T Consensus       184 rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ll----~ll~lPl~~~~~~~~~~~~~~~~  259 (285)
T TIGR02235       184 HQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLL----ALASIPWAVKLIRLVRQNHNNPE  259 (285)
T ss_pred             ccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999987766555544443332    233334343333332  111222


Q ss_pred             ------hHHHHHHHHHHHHHHHH
Q 039281          137 ------STFSFYMFIWKASDCTY  153 (165)
Q Consensus       137 ------~i~sfY~fIWkLFy~EY  153 (165)
                            ..+.--++.+.++|.-.
T Consensus       260 ~l~~~l~~t~~~~~~~g~l~~~g  282 (285)
T TIGR02235       260 QISNCKFIAVRFHFLSGILLTLG  282 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence                  23555666666666543

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.62  E-value=2e-14  Score=120.94  Aligned_cols=107  Identities=24%  Similarity=0.342  Sum_probs=84.5

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhh------------hhhc--------------cccchhHHHHHHHHHHHHHHHHHHHHh
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQK------------YVLG--------------RPVEITRSLMFATVFICCFCIASAFLK   56 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~~------------~vlg--------------~~~~~~~~~~~~~~f~~~f~~~i~i~K   56 (165)
                      ++|+.++.+.++.++|..||.+.            .+.|              .+..++.+.+..+.++++..+.+++.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~  181 (285)
T PRK12872        102 GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLKSFIREIVF  181 (285)
T ss_pred             ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            47888888888999999999720            0000              012245666777788888899999999


Q ss_pred             ccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 039281           57 DLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSK  109 (165)
Q Consensus        57 Di~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~  109 (165)
                      |+||+||||+.|++|+|+++|+|++.+++..+....++..+........++-.
T Consensus       182 d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (285)
T PRK12872        182 DIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLL  234 (285)
T ss_pred             hcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence            99999999999999999999999999999999999999888666655433333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.60  E-value=3e-14  Score=123.44  Aligned_cols=149  Identities=14%  Similarity=0.080  Sum_probs=108.5

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhh--------------------hhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQK--------------------YVLGR----PVEITRSLMFATVFICCFCIASAFLKDL   58 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~~--------------------~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi   58 (165)
                      .|||++..+.++.++|..||.+.                    .+.|.    +..++.+.+..+..+++.+..+...||+
T Consensus       117 ~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~  196 (304)
T PRK07419        117 SDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHF  196 (304)
T ss_pred             hcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999831                    11111    4567788889999999999999999999


Q ss_pred             CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCchh
Q 039281           59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTV--DLSSNT  136 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~v--dl~sk~  136 (165)
                      ||+|.||+.|+||+|+|+|+|++.+++..+...+|+..+........++...+    -.+..+..+...|.+  |.++++
T Consensus       197 rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~Ll----~ll~lPl~~~~~~~~~~~~~~~~  272 (304)
T PRK07419        197 HQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTLL----SLLSLPFAIKLIRLVRENHDQPE  272 (304)
T ss_pred             cchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999988876665533332222    233344444333332  111222


Q ss_pred             ------hHHHHHHHHHHHHHHHHHH
Q 039281          137 ------STFSFYMFIWKASDCTYIL  155 (165)
Q Consensus       137 ------~i~sfY~fIWkLFy~EYll  155 (165)
                            .-+.-.++.+.+.+.--++
T Consensus       273 ~l~~~l~~t~~~~~l~g~l~~l~~~  297 (304)
T PRK07419        273 KVSNSKFIAVRFHFWSGLLLSLGLI  297 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2456667777776665443

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.60  E-value=6.6e-14  Score=120.04  Aligned_cols=141  Identities=18%  Similarity=0.227  Sum_probs=106.4

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhh--------------------hhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQK--------------------YVLGR----PVEITRSLMFATVFICCFCIASAFLKDL   58 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~~--------------------~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi   58 (165)
                      .+|+.+....++.+++..||.+.                    .++|.    ...++.+.+..+...++.+..+...||+
T Consensus       114 ~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~  193 (296)
T PRK05951        114 RGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNL  193 (296)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCC
Confidence            45777888889999999999732                    12222    2334566667777788888999999999


Q ss_pred             CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281           59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST  138 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i  138 (165)
                      ||+|+||+.|+||+|+|+|+|++ +++..+...+|+..+........++...+...++-.....+.++.+..|.+++++.
T Consensus       194 ~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~  272 (296)
T PRK05951        194 RDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEAT  272 (296)
T ss_pred             ccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHH
Confidence            99999999999999999999999 88888888899888877776644444555556666666666667777777777666


Q ss_pred             HHHHHH
Q 039281          139 FSFYMF  144 (165)
Q Consensus       139 ~sfY~f  144 (165)
                      .+.++.
T Consensus       273 ~~~~~~  278 (296)
T PRK05951        273 VQLFML  278 (296)
T ss_pred             HHHHHH
Confidence            666554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.59  E-value=3.4e-14  Score=120.27  Aligned_cols=151  Identities=15%  Similarity=0.170  Sum_probs=99.7

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhhhhccc------------------------cchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQKYVLGRP------------------------VEITRSLMFATVFICCFCIASAFLKDL   58 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~~~vlg~~------------------------~~~~~~~~~~~~f~~~f~~~i~i~KDi   58 (165)
                      ++|+....+.++.+.+.+||.+..-+|+.                        ...+++.++....+++++.+++++||+
T Consensus       104 ~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~nd~  183 (283)
T TIGR01476       104 GNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTLNDF  183 (283)
T ss_pred             HHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34554666677888999999731111110                        124555666677778899999999999


Q ss_pred             CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281           59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST  138 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i  138 (165)
                      ||+||||+.|+||+|+++|+|++.+++..++.++|...+........++.   ....-.++.+.++...|..- +++++.
T Consensus       184 ~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~l~~ll~~p~~~~~~~~~~-~~~~~~  259 (283)
T TIGR01476       184 KSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWV---ATIVFLLLVAQIYNQIKLFL-RDPQQN  259 (283)
T ss_pred             cchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH---HHHHHHHHHHHHHHHHHHHH-hChHHh
Confidence            99999999999999999999999999999999999777644433222211   11112233333333322221 244555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 039281          139 FSFYMFIWKASDCTYILNQ  157 (165)
Q Consensus       139 ~sfY~fIWkLFy~EYll~P  157 (165)
                      ..=|.-.++++++=-.+.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~  278 (283)
T TIGR01476       260 YVRYNATANPFYVLGMLAA  278 (283)
T ss_pred             hHHhhhhcHHHHHHHHHHH
Confidence            5666788888877666654

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.58  E-value=9.1e-14  Score=119.23  Aligned_cols=99  Identities=20%  Similarity=0.197  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHhhhh--------------------hhhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhccCCh
Q 039281            6 PLVLGVIVWFLFGTAYSVQ--------------------KYVLGR----PVEITRSLMFATVFICCFCIASAFLKDLHDV   61 (165)
Q Consensus         6 pLl~~~~~slllgtaYS~~--------------------~~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi~Di   61 (165)
                      ++++.+.++.++|.+||.+                    ..++|.    ...++++.++.+...++++..++..||+||+
T Consensus       110 ~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~  189 (284)
T TIGR00751       110 WFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDI  189 (284)
T ss_pred             HHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            7788888999999999983                    112222    4456777778888889999999999999999


Q ss_pred             hhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281           62 DGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSS  104 (165)
Q Consensus        62 eGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~  104 (165)
                      |+||+.|+||+|+|+|+|++.+++..++..+|+..+.......
T Consensus       190 ~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~  232 (284)
T TIGR00751       190 PTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATP  232 (284)
T ss_pred             hhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999988776555443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.57  E-value=1.9e-13  Score=118.82  Aligned_cols=101  Identities=21%  Similarity=0.171  Sum_probs=81.4

Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhh--------------------hhcc----ccchhHHHH-------------------
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQKY--------------------VLGR----PVEITRSLM-------------------   39 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~~~--------------------vlg~----~~~~~~~~~-------------------   39 (165)
                      .+|+++..+.++.++|..||.+..                    ++|.    +..++...+                   
T Consensus       112 ~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (317)
T PRK13387        112 TSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAI  191 (317)
T ss_pred             hcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHH
Confidence            578999999999999999998311                    1111    222333322                   


Q ss_pred             -HHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039281           40 -FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS  103 (165)
Q Consensus        40 -~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~  103 (165)
                       +.+..+++....+++.||+||+|+||+.|+||+|+|+|+|++.+++..+...+|+..+......
T Consensus       192 ~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g  256 (317)
T PRK13387        192 GVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMG  256 (317)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3778888889999999999999999999999999999999999999999999999877665554

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.56  E-value=2.4e-14  Score=124.76  Aligned_cols=86  Identities=17%  Similarity=0.181  Sum_probs=74.3

Q ss_pred             HHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039281           50 IASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRART  129 (165)
Q Consensus        50 ~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~  129 (165)
                      ++++++||+||+||||+.|++|+|+++|+|++.++...+...+|+..+........++...+.+-+-.+-...+|+-+++
T Consensus       193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~  272 (307)
T PRK13591        193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP  272 (307)
T ss_pred             HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence            77889999999999999999999999999999999999999999999888887777777777676667777778877777


Q ss_pred             ccCCch
Q 039281          130 VDLSSN  135 (165)
Q Consensus       130 vdl~sk  135 (165)
                      .|-+++
T Consensus       273 ~~~~~~  278 (307)
T PRK13591        273 FENEPS  278 (307)
T ss_pred             cccCcH
Confidence            766654

>PLN02922 prenyltransferase

Probab=99.55  E-value=3e-13  Score=117.71  Aligned_cols=104  Identities=18%  Similarity=0.271  Sum_probs=87.4

Q ss_pred             cchHHHHHHHHHHHHHHHhhhh--------------------hhhhcc----cc----------chhHHHHHHHHHHHHH
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQ--------------------KYVLGR----PV----------EITRSLMFATVFICCF   48 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~--------------------~~vlg~----~~----------~~~~~~~~~~~f~~~f   48 (165)
                      ++|++++.+.++++.|..||.+                    -.+.|.    +.          .++.+.+.++..+++.
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll  200 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLT  200 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHH
Confidence            5799999999999999999972                    011111    11          3567788999999999


Q ss_pred             HHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 039281           49 CIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSIL  106 (165)
Q Consensus        49 ~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~  106 (165)
                      +..+..+||+||+|.||+.|+||+|+|+|+|++.+++..++..+|+..+...+....+
T Consensus       201 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p  258 (315)
T PLN02922        201 TTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALP  258 (315)
T ss_pred             HHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999888776665433

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.54  E-value=3.2e-13  Score=116.44  Aligned_cols=145  Identities=17%  Similarity=0.213  Sum_probs=96.2

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhhhhcc------------------------ccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQKYVLGR------------------------PVEITRSLMFATVFICCFCIASAFLKDLH   59 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~~~vlg~------------------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~   59 (165)
                      +|+.++.+.++++++.+||.+..-+++                        ...++++.+.....+++.+.++++.||+|
T Consensus       127 ~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~  206 (306)
T TIGR02056       127 FPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFK  206 (306)
T ss_pred             chHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            467777888999999999962111111                        13445666778888889999999999999


Q ss_pred             ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281           60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS-SILLSKLLTIISHCILASSLWLRARTVDLSSNTST  138 (165)
Q Consensus        60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~-~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i  138 (165)
                      |+||||+.|+||+|+++|+|++.+++..++..+|...+..-... ..++...+    -.+..+.++++.|++- ++++..
T Consensus       207 D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll----~ll~~p~~~~~~~~~~-~~~~~~  281 (306)
T TIGR02056       207 SVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAAL----VALIIPQITFQDKYFL-KDPLKN  281 (306)
T ss_pred             ChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH----HHHHHHHHHHHHHHHH-hChHhh
Confidence            99999999999999999999999999999888887655433332 22222222    2222333444434332 144444


Q ss_pred             HHHHHHHHHHHHHHH
Q 039281          139 FSFYMFIWKASDCTY  153 (165)
Q Consensus       139 ~sfY~fIWkLFy~EY  153 (165)
                      ...|+-.=++||.-.
T Consensus       282 ~~~~~~~~~~~~~~~  296 (306)
T TIGR02056       282 DVKYQASAQPFLVLG  296 (306)
T ss_pred             CcchhhhhhHHHHHH
Confidence            455555555555544

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.50  E-value=3e-12  Score=108.84  Aligned_cols=149  Identities=15%  Similarity=0.254  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHhhhh-----------------hhhhcccc---chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhh
Q 039281            7 LVLGVIVWFLFGTAYSVQ-----------------KYVLGRPV---EITRSLMFATVFICCFCIASAFLKDLHDVDGDKE   66 (165)
Q Consensus         7 Ll~~~~~slllgtaYS~~-----------------~~vlg~~~---~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~   66 (165)
                      .++...+++++++.|--.                 ....|...   ..+.+.+++..+..+.+.+.+++||+||+||||+
T Consensus       118 ~~~l~~~~~~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~  197 (289)
T COG0382         118 AFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRK  197 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHh
Confidence            355666788888888330                 11122211   1467788999999999999999999999999999


Q ss_pred             cCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHH
Q 039281           67 FGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW  146 (165)
Q Consensus        67 ~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~sfY~fIW  146 (165)
                      .|++|.|+++|+|++.+++.... ........++.....  ....-..++...+..+++|.+.+|.++++....+++.-.
T Consensus       198 ~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (289)
T COG0382         198 AGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNL  274 (289)
T ss_pred             cCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhh
Confidence            99999999999999999998888 444444444443322  224567788888999999999999998888888888887


Q ss_pred             HHHHHHHHHHHH
Q 039281          147 KASDCTYILNQI  158 (165)
Q Consensus       147 kLFy~EYll~P~  158 (165)
                      .+-.+..+...+
T Consensus       275 ~~~~~~~~~~~~  286 (289)
T COG0382         275 LLGLLLFIGLIL  286 (289)
T ss_pred             HHHHHHHHHHHH
Confidence            777666655544

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.49  E-value=4.8e-13  Score=117.18  Aligned_cols=101  Identities=18%  Similarity=0.336  Sum_probs=77.0

Q ss_pred             chHHHHHHHHHHHHHHHhhhhhhhhcc------------------------ccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQKYVLGR------------------------PVEITRSLMFATVFICCFCIASAFLKDLH   59 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~~~vlg~------------------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~   59 (165)
                      +|+.++.+.++++++.+||.+..-++|                        ...++++.+....+.++.+.+++++||+|
T Consensus       124 ~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~  203 (331)
T PRK12392        124 GMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFK  203 (331)
T ss_pred             hHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            345556667889999999973221221                        01245556677778888999999999999


Q ss_pred             ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281           60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSS  104 (165)
Q Consensus        60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~  104 (165)
                      |+||||+.|+||+|+++|+|++.+++.....+..+..+..+....
T Consensus       204 D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~  248 (331)
T PRK12392        204 SVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWG  248 (331)
T ss_pred             chhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999988877677766666665553

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.46  E-value=6.6e-12  Score=106.45  Aligned_cols=101  Identities=10%  Similarity=0.128  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039281           36 RSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIIS  115 (165)
Q Consensus        36 ~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~  115 (165)
                      .+.+.......+.+...+++||.||+||||+.|++|+|+++|+|++.+++.....+.+...+..+......+.   -..+
T Consensus       158 ~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~---y~~~  234 (282)
T TIGR01475       158 LVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYI---ALLA  234 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH---HHHH
Confidence            3445555566777788999999999999999999999999999999999988888888887777766543222   2235


Q ss_pred             HHHHHHHHHHHHHHccCCchhhHH
Q 039281          116 HCILASSLWLRARTVDLSSNTSTF  139 (165)
Q Consensus       116 H~~l~~~l~~ra~~vdl~sk~~i~  139 (165)
                      ..+....++++.+.+|.+|+++..
T Consensus       235 ~~~~~~~l~~~~~~~~~~~~~~~~  258 (282)
T TIGR01475       235 LILIGLILAYEHYIVDPGDQSKIQ  258 (282)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHH
Confidence            556667788888899988876553

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.45  E-value=6.6e-12  Score=105.70  Aligned_cols=100  Identities=20%  Similarity=0.324  Sum_probs=73.8

Q ss_pred             chHHHHHHHHHHHHHHHhhhh------------------hhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ------------------KYVLGRP--VEITRSLMFATVFICCFCIASAFLKDLHDVDG   63 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~------------------~~vlg~~--~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG   63 (165)
                      |++.++...++.+.+..||..                  ..+.|..  ...+.+.+....++.+.+.+.++.||+||+||
T Consensus       103 ~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~  182 (279)
T PRK12884        103 SPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG  182 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            455666667888889999972                  0011110  11122456666677788888999999999999


Q ss_pred             hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039281           64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS  103 (165)
Q Consensus        64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~  103 (165)
                      ||+.|+||+|+++|+|++.+++..+....++..+......
T Consensus       183 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12884        183 DRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG  222 (279)
T ss_pred             HHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888887665544443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.45  E-value=2.6e-12  Score=111.19  Aligned_cols=95  Identities=17%  Similarity=0.322  Sum_probs=75.4

Q ss_pred             chHHHHHHHHHHHHHHHhhhhh-----------hhhcc---------------ccchhHHHHHHHHHHHHHHHHHHHHhc
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQK-----------YVLGR---------------PVEITRSLMFATVFICCFCIASAFLKD   57 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~~-----------~vlg~---------------~~~~~~~~~~~~~f~~~f~~~i~i~KD   57 (165)
                      +|+..+...++++++.+||.+.           .+.|.               +...++..++...+.++.+.+++.+||
T Consensus       131 ~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d  210 (314)
T PRK07566        131 GPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLND  210 (314)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666667778899999999421           11111               123556677777788888999999999


Q ss_pred             cCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 039281           58 LHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVV   98 (165)
Q Consensus        58 i~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~   98 (165)
                      ++|+|+||+.|+||+|+++|+|++.+++..++..+|+..+.
T Consensus       211 ~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~  251 (314)
T PRK07566        211 FKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA  251 (314)
T ss_pred             HHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887643

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.43  E-value=1.6e-11  Score=99.70  Aligned_cols=80  Identities=28%  Similarity=0.516  Sum_probs=61.4

Q ss_pred             chHHHHHHHHHHHHHHHhhhh----------h----h------hhc---cccchhHHHHHHHHHHHHHHHHHHHHhccCC
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ----------K----Y------VLG---RPVEITRSLMFATVFICCFCIASAFLKDLHD   60 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~----------~----~------vlg---~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~D   60 (165)
                      +++.+....++.+.+.+||-+          .    .      ..|   .....+.+.+....+..++...+...+|++|
T Consensus        91 ~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  170 (257)
T PF01040_consen   91 GPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRD  170 (257)
T ss_pred             CchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456666667778888999930          0    0      000   0122356677777787899999999999999


Q ss_pred             hhhhhhcCCcchhHHhhHHHHHH
Q 039281           61 VDGDKEFGIETLSVKLGKERVFW   83 (165)
Q Consensus        61 ieGDr~~Gi~Tlav~lG~~~~~~   83 (165)
                      +||||+.|+||+|+++|+|++..
T Consensus       171 ~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  171 IEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHH
Confidence            99999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.42  E-value=1.1e-11  Score=110.51  Aligned_cols=146  Identities=18%  Similarity=0.252  Sum_probs=92.7

Q ss_pred             chHHHHHHHHHHHHHHHhhhh-----------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ-----------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLH   59 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~-----------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~   59 (165)
                      +|+.++...++.+++.+||.+           ..++|.             ...+++..++.+.++++.+.+++++||+|
T Consensus       196 ~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~  275 (375)
T PLN00012        196 FPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFK  275 (375)
T ss_pred             cHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            345556666788889999951           112221             13455667778888889999999999999


Q ss_pred             ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHH
Q 039281           60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTF  139 (165)
Q Consensus        60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~  139 (165)
                      |+||||+.|++|+|+++|+|++.+++..++.+.+...+  +..... .........-.+.+..++++.+ ..++|+.+..
T Consensus       276 Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~--~~l~~~-~~~~y~~~~~~l~l~~l~~~~~-~~~~~p~~~~  351 (375)
T PLN00012        276 SIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA--GYLLAI-GKPYYALALLGLIIPQIFFQFK-YFLPDPVKND  351 (375)
T ss_pred             chhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH--HHHHHH-hHHHHHHHHHHHHHHHHHHHHH-HHhcCHHHHH
Confidence            99999999999999999999999999876776665443  222111 0111111112233333333333 3344666666


Q ss_pred             HHHHHHHHHHHHHH
Q 039281          140 SFYMFIWKASDCTY  153 (165)
Q Consensus       140 sfY~fIWkLFy~EY  153 (165)
                      .-|+-.=+.|+.=.
T Consensus       352 ~~~~~~a~~~~~~~  365 (375)
T PLN00012        352 VKYQASAQPFLVFG  365 (375)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66665555554433

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.40  E-value=8e-12  Score=108.84  Aligned_cols=149  Identities=19%  Similarity=0.202  Sum_probs=111.9

Q ss_pred             cchHHHHHHHHHHHHHHHhhhh--------------------hhhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281            3 RSPPLVLGVIVWFLFGTAYSVQ--------------------KYVLGR----PVEITRSLMFATVFICCFCIASAFLKDL   58 (165)
Q Consensus         3 ~s~pLl~~~~~slllgtaYS~~--------------------~~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi   58 (165)
                      .+|.+++.+.+|.++|..|+++                    ..++|.    ++.+++.....+..++..+..+...||+
T Consensus       119 s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNi  198 (303)
T COG1575         119 SDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNL  198 (303)
T ss_pred             hhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccc
Confidence            3567788899999999999993                    122232    6778899999999999999999999999


Q ss_pred             CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-hh-
Q 039281           59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSS-NT-  136 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~s-k~-  136 (165)
                      +|+|-|++.|++|+|+|+|+|+++.+...++..+|+..++.-.....++-..+    -.+.++...+..|++--++ +. 
T Consensus       199 rDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll----~ll~~Pl~ir~~r~v~~~~~~~~  274 (303)
T COG1575         199 RDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL----FLLALPLAIRAARPVRQNQVPAT  274 (303)
T ss_pred             ccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----HHHHHHHHHHHHHHHHhccCchH
Confidence            99999999999999999999999999999999999988765444443332233    3344555555555543321 11 


Q ss_pred             -----hHHHHHHHHHHHHHHHHHH
Q 039281          137 -----STFSFYMFIWKASDCTYIL  155 (165)
Q Consensus       137 -----~i~sfY~fIWkLFy~EYll  155 (165)
                           +-+..-+.+|.+-++--++
T Consensus       275 ~~p~l~~~~~~~~~~~~l~~~~i~  298 (303)
T COG1575         275 LVPMLKNTVKANLLWNLLLAVGIL  298 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3356677788876655444

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.38  E-value=1.8e-11  Score=104.02  Aligned_cols=131  Identities=9%  Similarity=0.103  Sum_probs=90.8

Q ss_pred             chHHHHHHHHHHHHHHHhhhh-------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ-------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG   63 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~-------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG   63 (165)
                      ++..++...++++++..||..       ..+.|-             ...++.+.++......+.+...+++||++|+|+
T Consensus       113 ~~~~~~~~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~  192 (285)
T PRK12847        113 NKTTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKD  192 (285)
T ss_pred             hHHHHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            455566667788889999851       111111             123556667777777888888999999999999


Q ss_pred             hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281           64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST  138 (165)
Q Consensus        64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i  138 (165)
                      ||+.|++|+|+++|+|++.+++.......+...+..-.....++--    .++++....++++.+.+|.+|+++.
T Consensus       193 D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y----~~~~~~~~~l~~~~~~~~~~~~~~~  263 (285)
T PRK12847        193 DLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFY----LAILAAAGIFYYQYKLLDFDNPANC  263 (285)
T ss_pred             HHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999999999999988887777766554332222211111    2344455677788888988876543

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.38  E-value=7.2e-12  Score=108.64  Aligned_cols=89  Identities=17%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             chHHHHHHHHHHHHHHHhhhh-------------------------hhhhccccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ-------------------------KYVLGRPVEITRSLMFATVFICCFCIASAFLKDL   58 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~-------------------------~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi   58 (165)
                      ++..+....++++++.+||..                         ..+.|.+.  ++..   .....+++.+.+++||+
T Consensus       117 ~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~~~~g~~~--~~~~---l~a~~~w~~g~dii~ai  191 (292)
T PRK13595        117 PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPALALGAPV--PWPP---LLALMAWSVGKHAFDAA  191 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHHHHcCCcc--hHHH---HHHHHHHHHHHHHHHhc
Confidence            455566667888999999952                         11122111  1211   23345677999999999


Q ss_pred             CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281           59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAV   97 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i   97 (165)
                      ||+||||+.|+||+|+++|+|++.++|..+..++-+...
T Consensus       192 ~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~  230 (292)
T PRK13595        192 QDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW  230 (292)
T ss_pred             cChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887766544433

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.36  E-value=2.4e-11  Score=104.60  Aligned_cols=95  Identities=20%  Similarity=0.311  Sum_probs=73.6

Q ss_pred             HHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281           48 FCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRA  127 (165)
Q Consensus        48 f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra  127 (165)
                      -+.+-+++++.+|+|+||+.|++|+|+++|+|+..+++. +....+.....+|...  ..+.... .+|++.+..+++|.
T Consensus       178 W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~  253 (289)
T PLN02809        178 WTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQI  253 (289)
T ss_pred             HHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHH
Confidence            366677999999999999999999999999998888875 5555677666666544  3344444 37999999999999


Q ss_pred             HHccCCchhhHHH-HHHHHH
Q 039281          128 RTVDLSSNTSTFS-FYMFIW  146 (165)
Q Consensus       128 ~~vdl~sk~~i~s-fY~fIW  146 (165)
                      +.+|++|+++..+ |.+..|
T Consensus       254 ~~v~~~~~~~~~~~F~~n~~  273 (289)
T PLN02809        254 QTVDLSSRADCNRKFVSNKW  273 (289)
T ss_pred             HHcCCCCHHHHHHHHHhCCH
Confidence            9999999887643 444333

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.35  E-value=5.3e-11  Score=100.50  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039281           39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCI  118 (165)
Q Consensus        39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~  118 (165)
                      +....+..+...+++++||+||+||||+.|++|+|+++|+|++.+++..............-...  ..+....+..-..
T Consensus       160 ~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~  237 (276)
T PRK12882        160 LVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLS--TFGLWYLVLVAPA  237 (276)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH
Confidence            34444445556789999999999999999999999999999999988777665554443221111  1222222222223


Q ss_pred             HHHHHHHHHHHccCCchhhH
Q 039281          119 LASSLWLRARTVDLSSNTST  138 (165)
Q Consensus       119 l~~~l~~ra~~vdl~sk~~i  138 (165)
                      .+..++...+..|.+|+++.
T Consensus       238 ~~~~l~~~~~~~~~~~~~~~  257 (276)
T PRK12882        238 DLVMLAAAYRSLKKTDPTAS  257 (276)
T ss_pred             HHHHHHHHHHHHcCCCHHHH
Confidence            33344445566666665433

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.34  E-value=6.8e-11  Score=101.35  Aligned_cols=106  Identities=11%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281           34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI  113 (165)
Q Consensus        34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~  113 (165)
                      ++++.+++....++.+.+.+++||++|+|+||+.|+||+|+++|+|++.+++..+....++.....|......+.-.   
T Consensus       157 ~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---  233 (284)
T PRK12888        157 WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---  233 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---
Confidence            45666777777788888999999999999999999999999999999998877776666666666665543322222   


Q ss_pred             HHHHHHHHHHHHHHHHccCCchhhHH-HHH
Q 039281          114 ISHCILASSLWLRARTVDLSSNTSTF-SFY  142 (165)
Q Consensus       114 ~~H~~l~~~l~~ra~~vdl~sk~~i~-sfY  142 (165)
                      .+-.+.+..+.+|.+.+|.+|.++.. +|+
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        234 IGLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            23346667778888899999877653 544

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.26  E-value=4.8e-10  Score=94.98  Aligned_cols=93  Identities=15%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHHHhhh--------hhh----------hhcccc-chhHHHHHHHHHHHHHHHHHHHHhccCChhhhh
Q 039281            5 PPLVLGVIVWFLFGTAYSV--------QKY----------VLGRPV-EITRSLMFATVFICCFCIASAFLKDLHDVDGDK   65 (165)
Q Consensus         5 ~pLl~~~~~slllgtaYS~--------~~~----------vlg~~~-~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr   65 (165)
                      +.......++.+++..||.        +..          +.|... +-+.+.+++.....+.+.++++.||.||+|+||
T Consensus       104 ~~~~~l~~~~~~~~~~Ys~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~  183 (279)
T PRK09573        104 IYAFLIALLNSILLYLYAKDLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRIIILFLCAFFSTWSREIVKDIEDIEGDL  183 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            4445555567777889985        111          111100 002233445555566777899999999999999


Q ss_pred             hcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281           66 EFGIETLSVKLGKERVFWLCVYMLSIAYGAAV   97 (165)
Q Consensus        66 ~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i   97 (165)
                      +.|++|+|+++|+|++.+++............
T Consensus       184 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~  215 (279)
T PRK09573        184 KENVITLPIKYGIKKSWYIAKILLILAIVLSP  215 (279)
T ss_pred             HCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987766655555443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.26  E-value=2.5e-10  Score=97.26  Aligned_cols=133  Identities=14%  Similarity=0.221  Sum_probs=82.5

Q ss_pred             chHHHHHHHHHHHHHHHhhhh-------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ-------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG   63 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~-------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG   63 (165)
                      +++......+++++...||..       +.+.|-             ....+.+.+.+.....+.+.+.+++||++|+|+
T Consensus       108 ~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~  187 (281)
T TIGR01474       108 NPLTILLGVASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKED  187 (281)
T ss_pred             hHHHHHHHHHHHHHHHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            345555666778889999961       111111             123445555555666777888999999999999


Q ss_pred             hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHHH
Q 039281           64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFS  140 (165)
Q Consensus        64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~s  140 (165)
                      ||+.|+||+|+++|+|+..+.+.......+... +.+....  .+.... .+-.+....+.++...+|.+|+++..+
T Consensus       188 D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (281)
T TIGR01474       188 DIKIGVKSTALRFGDNTKPWLGGLYALMILLLA-LAGLIAG--LGPVYY-LGLAAAALLLIRQIATLDIRDPENCLK  260 (281)
T ss_pred             HHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHH-HHHHHhC--CcHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999987665544444344333 3333322  122222 223344556666677777766665433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.24  E-value=3.3e-10  Score=97.70  Aligned_cols=101  Identities=12%  Similarity=0.146  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039281           38 LMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHC  117 (165)
Q Consensus        38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~  117 (165)
                      .+++.....+-+.+.++++|.+|+|+||+.|+||+|+++|+|+..+++..+...........|....   + ..--.+-.
T Consensus       161 ~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~-~~y~~~~~  236 (286)
T PRK12895        161 IYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---T-LWYLAALI  236 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---h-HHHHHHHH
Confidence            3455566677788899999999999999999999999999999988876666666666666664442   2 22235566


Q ss_pred             HHHHHHHHHHHHccCCchhhH-HHHH
Q 039281          118 ILASSLWLRARTVDLSSNTST-FSFY  142 (165)
Q Consensus       118 ~l~~~l~~ra~~vdl~sk~~i-~sfY  142 (165)
                      +.+..+.+|.+.+|.+|.++. .+|+
T Consensus       237 ~~~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        237 IIYTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            777788889999999988877 4533

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.23  E-value=3.3e-10  Score=97.89  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhh--------hhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281            5 PPLVLGVIVWFLFGTAYSVQK--------YVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG   63 (165)
Q Consensus         5 ~pLl~~~~~slllgtaYS~~~--------~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG   63 (165)
                      ++.+.....+.+++..|+...        ...|.             ....+.+.+....+..+-+..++.+||++|+||
T Consensus       123 ~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~  202 (297)
T PRK12871        123 LYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDFTLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLEN  202 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            445555667777888887622        12232             123445556666777777999999999999999


Q ss_pred             hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281           64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST  138 (165)
Q Consensus        64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i  138 (165)
                      |++.|+||+|+++|+|++.+....+..+.+...+  +...  ..+.......-.+.+..+.+|.+..+-++|++.
T Consensus       203 D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (297)
T PRK12871        203 DRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAGFVLLAGANLYLWKEKSQDAG  273 (297)
T ss_pred             HHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            9999999999999999998766655555544333  2222  223232222224555667788888877777654

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.23  E-value=4.1e-10  Score=97.56  Aligned_cols=106  Identities=9%  Similarity=0.071  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039281           37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISH  116 (165)
Q Consensus        37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H  116 (165)
                      +.+++.....+.+.+.+++||.||+|+||+.|+||+|+++| |++.+++..+...........|......  .... .+-
T Consensus       178 ~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg--~~y~-~~~  253 (300)
T PRK13106        178 VPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLG--PIAI-AAT  253 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHH
Confidence            33445555677788899999999999999999999999999 8888888877777777766666554322  1211 223


Q ss_pred             HHHHHHHHHHHHHccCCchhhHHHHHHHHHH
Q 039281          117 CILASSLWLRARTVDLSSNTSTFSFYMFIWK  147 (165)
Q Consensus       117 ~~l~~~l~~ra~~vdl~sk~~i~sfY~fIWk  147 (165)
                      .+....+.++.+.+|.+ ++-.+.|.+..|-
T Consensus       254 ~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~i  283 (300)
T PRK13106        254 ILHGLIMAYAYYLASKK-GDFGRAFYYNIYS  283 (300)
T ss_pred             HHHHHHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence            35556667788888877 6666777766653

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.19  E-value=8.2e-10  Score=93.32  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=57.2

Q ss_pred             chHHHHHHHHHHHHHHHhhhh----h----h----------hhccc--cchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ----K----Y----------VLGRP--VEITRSLMFATVFICCFCIASAFLKDLHDVDG   63 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~----~----~----------vlg~~--~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG   63 (165)
                      +|+.+....++...+..||..    .    .          +.|..  ...+...+. ..+..+....+++.||+||+||
T Consensus       103 ~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~  181 (277)
T PRK12883        103 NIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYL-AICAFLVNVAREIMKDIEDIEG  181 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHHHHHhhhhhhcc
Confidence            455555566677889999961    0    0          11100  112232222 2334556678999999999999


Q ss_pred             hhhcCCcchhHHhhHHHHHHHHHHHH
Q 039281           64 DKEFGIETLSVKLGKERVFWLCVYML   89 (165)
Q Consensus        64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll   89 (165)
                      ||+.|++|+|+++|+|++.+++....
T Consensus       182 D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        182 DKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             HHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            99999999999999999998765543

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.17  E-value=4.3e-10  Score=96.65  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281           34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVG  100 (165)
Q Consensus        34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g  100 (165)
                      .++..++.+.  .+.+.++.++||+||+|+||+.|+||+|+++|+|++.+++......+-...+.++
T Consensus       165 ~~~~~l~~a~--~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        165 LPPLLAVAGG--WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             CcHHHHHHHH--HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444444443  5788899999999999999999999999999999999888877777666665544

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.13  E-value=2e-09  Score=93.61  Aligned_cols=142  Identities=13%  Similarity=0.121  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHHHHHHhhhh-------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281            4 SPPLVLGVIVWFLFGTAYSVQ-------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG   63 (165)
Q Consensus         4 s~pLl~~~~~slllgtaYS~~-------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG   63 (165)
                      +|+.+....+++++...|+..       +.+.|-             ...++.+.+.+.....+-+...+.+++++|+|+
T Consensus       140 ~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~  219 (314)
T PRK12878        140 NWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKED  219 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence            455566666778888899761       111221             122344445554455666777788999999999


Q ss_pred             hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHH
Q 039281           64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYM  143 (165)
Q Consensus        64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~sfY~  143 (165)
                      ||+.|++|+|+++|+|++.+++........... +.+......+--.+..   ..+...+.+|.+++|.+++++-.+++ 
T Consensus       220 D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~F-  294 (314)
T PRK12878        220 DALIGVKSTARLFGDHTKTWLVLFYGLAVLLMG-LAFWLAGVPLLALLGL---LAAAAHLAWQIARLDIDDPDQCLRLF-  294 (314)
T ss_pred             HHHcCCcccchHhchhhHHHHHHHHHHHHHHHH-HHHHHhcCcHHHHHHH---HHHHHHHHHHHHHcccCChHHHHHHH-
Confidence            999999999999999999988865555444333 2332222122112212   22233356778888888776533333 


Q ss_pred             HHHHHHHH
Q 039281          144 FIWKASDC  151 (165)
Q Consensus       144 fIWkLFy~  151 (165)
                       -.+.+|.
T Consensus       295 -~~n~~~~  301 (314)
T PRK12878        295 -KSNRDAG  301 (314)
T ss_pred             -HHhHHHH
Confidence             3344443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.12  E-value=2.2e-09  Score=92.18  Aligned_cols=111  Identities=12%  Similarity=0.109  Sum_probs=73.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 039281           33 EITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLT  112 (165)
Q Consensus        33 ~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~  112 (165)
                      ..+.+.+++...+.+.+.+.+++|+.+|+|+|++.|++|+|+++|+|+..+++...... ......+|....  .+....
T Consensus       163 ~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~-~~~l~~~~~~~~--~~~~y~  239 (290)
T PRK12870        163 HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALT-VGFLAILGVLLE--LHLPFW  239 (290)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHH-HHHHHHHHHHhC--CcHHHH
Confidence            34556667777778889999999999999999999999999999999998877633322 222333343322  112211


Q ss_pred             HHHHHHHHHHHHHHHHHc--cCCchh-hHHHHHHHHHH
Q 039281          113 IISHCILASSLWLRARTV--DLSSNT-STFSFYMFIWK  147 (165)
Q Consensus       113 ~~~H~~l~~~l~~ra~~v--dl~sk~-~i~sfY~fIWk  147 (165)
                       .+-.+....+.++.+++  |.+|++ ..+.|.+..|-
T Consensus       240 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~  276 (290)
T PRK12870        240 -IGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI  276 (290)
T ss_pred             -HHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence             12234444566677777  777775 45556665553

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.11  E-value=3.7e-09  Score=90.91  Aligned_cols=98  Identities=14%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281           34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI  113 (165)
Q Consensus        34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~  113 (165)
                      ++.+.+++...+.+-+.+.+++++++|.|+||+.|++|+|+++|+|++.+++.......+......+......+  ...+
T Consensus       160 ~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~  237 (291)
T PRK12886        160 IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP--WFLA  237 (291)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH--HHHH
Confidence            44555555555566677788999999999999999999999999999999887777777766665555432211  1111


Q ss_pred             HHHHHHHHHHHHHHHHccCCc
Q 039281          114 ISHCILASSLWLRARTVDLSS  134 (165)
Q Consensus       114 ~~H~~l~~~l~~ra~~vdl~s  134 (165)
                       +-.+....+.++.+.++.+|
T Consensus       238 -~~~~~~~~~l~~~~~~~~~~  257 (291)
T PRK12886        238 -GLAVTGILLLYEHWLLRGGD  257 (291)
T ss_pred             -HHHHHHHHHHHHHHHhCCCC
Confidence             12233333335777777776

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.10  E-value=7.6e-09  Score=90.08  Aligned_cols=103  Identities=13%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039281           40 FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCIL  119 (165)
Q Consensus        40 ~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l  119 (165)
                      +.+....+...+.+++++.+|+|+||+.|++|+|+++|+|++.+++..+..+..+..+.+|......+.-......-...
T Consensus       176 lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~  255 (300)
T PRK12876        176 LWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTV  255 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            33444555556789999999999999999999999999999877777666666666655665543332211111111122


Q ss_pred             HHHHHHHHHHccCCchhhHHHHH
Q 039281          120 ASSLWLRARTVDLSSNTSTFSFY  142 (165)
Q Consensus       120 ~~~l~~ra~~vdl~sk~~i~sfY  142 (165)
                      .....+|.+.+|-++++.-.+|+
T Consensus       256 ~l~~~~~~~~~~~~~~~~~~~~F  278 (300)
T PRK12876        256 ILKTIKHYSLIDKKKSTLEQKFF  278 (300)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHH
Confidence            22245665667665444444433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.04  E-value=1.6e-08  Score=87.05  Aligned_cols=104  Identities=14%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281           34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI  113 (165)
Q Consensus        34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~  113 (165)
                      .+.+.+++...+.+-+.+.+++++++|+|+||+.|++|+|+++|+|++.++.........+.....+.....   .....
T Consensus       165 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  241 (291)
T PRK12874        165 IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAY  241 (291)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHH
Confidence            344455556666788888999999999999999999999999999999877655444433333333322211   11222


Q ss_pred             HHHHHHHHHHHHHHHHccCCchhhHHH
Q 039281          114 ISHCILASSLWLRARTVDLSSNTSTFS  140 (165)
Q Consensus       114 ~~H~~l~~~l~~ra~~vdl~sk~~i~s  140 (165)
                      .+-.+.+..++++.+.++.+++++-..
T Consensus       242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~  268 (291)
T PRK12874        242 LGVIVSALILLYEHYLVRKDFKKIDKA  268 (291)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            344455566777777776555544333

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.04  E-value=9.5e-09  Score=87.52  Aligned_cols=109  Identities=12%  Similarity=0.103  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281           34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI  113 (165)
Q Consensus        34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~  113 (165)
                      ++.+.+++.....+........++++|+|+||+.|++|+|+++|.|++.+++........ .....+....  .+... .
T Consensus       160 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~y-~  235 (282)
T PRK12848        160 VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLA-LLAWAGWLLG--LGWAY-Y  235 (282)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHH-HHHHHHHHhc--CcHHH-H
Confidence            455555555555666667778888999999999999999999999998877644333322 2223333221  12221 1


Q ss_pred             HHHHHHHHHHHHHHHHccCCchhhH-HHHHHHHH
Q 039281          114 ISHCILASSLWLRARTVDLSSNTST-FSFYMFIW  146 (165)
Q Consensus       114 ~~H~~l~~~l~~ra~~vdl~sk~~i-~sfY~fIW  146 (165)
                      .+-.+....+.++.+.+|.+++++. ..|++..|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~  269 (282)
T PRK12848        236 WGLLVAAALFVYQQKLIRDREREACFKAFLNNNW  269 (282)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence            2333555666777889998876644 45555433

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=98.81  E-value=2.2e-07  Score=79.17  Aligned_cols=59  Identities=8%  Similarity=0.129  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHH
Q 039281           33 EITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI   91 (165)
Q Consensus        33 ~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~   91 (165)
                      .++.+.++....+.+...+.....+.+|+|.||+.|+||+|+++|+|++.+........
T Consensus       156 ~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~  214 (279)
T PRK12869        156 SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNAL  214 (279)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHH
Confidence            34556666666767777777777788899999999999999999999998776555443

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=98.70  E-value=9.9e-07  Score=74.82  Aligned_cols=100  Identities=14%  Similarity=0.051  Sum_probs=57.7

Q ss_pred             HHHHhc--cCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039281           52 SAFLKD--LHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRART  129 (165)
Q Consensus        52 i~i~KD--i~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~  129 (165)
                      ....+|  .+|.|.||+.|+||+|+++|+|++.+.+............+.+....  .+....+.+-.+.+..+.++.+.
T Consensus       172 ~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~  249 (280)
T TIGR01473       172 PPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKF  249 (280)
T ss_pred             HHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence            444444  68999999999999999999999887666554444444333333322  12222222233444455566666


Q ss_pred             ccCC-chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039281          130 VDLS-SNTSTFSFYMFIWKASDCTYILNQIPH  160 (165)
Q Consensus       130 vdl~-sk~~i~sfY~fIWkLFy~EYll~P~~~  160 (165)
                      +|.+ +++       ..+|.|+..-..+|+.+
T Consensus       250 ~~~~~~~~-------~~~~~f~~s~~~~~~~~  274 (280)
T TIGR01473       250 YRDPTDRK-------KARKLFKFSLIYLALLF  274 (280)
T ss_pred             hcCCCcHH-------HHHHHHHHHHHHHHHHH
Confidence            6655 322       24555555555555544

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13592 ubiA prenyltransferase; Provisional

Probab=98.67  E-value=3.5e-07  Score=79.86  Aligned_cols=55  Identities=7%  Similarity=0.010  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281           39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA   95 (165)
Q Consensus        39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~   95 (165)
                      +.+.....+.+.++|+.||+|| ||||+. .+|+|+++|+|++.+++..+..+..+.
T Consensus       178 ~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        178 VLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence            4556677888999999999999 899975 999999999999999998887666554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.63  E-value=1.4e-06  Score=75.69  Aligned_cols=105  Identities=9%  Similarity=0.001  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039281           39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCI  118 (165)
Q Consensus        39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~  118 (165)
                      +++...+.+-+.+-+++++++|+|+||+.|++|+|+++|.+ +......+-.+.......+|......  .... .+-.+
T Consensus       173 l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~--~~y~-~~~~~  248 (294)
T PRK12873        173 LFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVG--FIFW-PFWLI  248 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHH
Confidence            33334556666678899999999999999999999999975 44554555555555555556554322  2221 23344


Q ss_pred             HHHHHHHHHHHccCCc---hhhHHHHHHHHHH
Q 039281          119 LASSLWLRARTVDLSS---NTSTFSFYMFIWK  147 (165)
Q Consensus       119 l~~~l~~ra~~vdl~s---k~~i~sfY~fIWk  147 (165)
                      .+..+.+|.+.+|.++   ++....|.+..|-
T Consensus       249 ~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~  280 (294)
T PRK12873        249 ASIGMQRDILKLFPEKQSIKTIGNHFSNQVIL  280 (294)
T ss_pred             HHHHHHHHHHHhCcCcccHHHHHHHHHhccHH
Confidence            4566677888898876   5566888887773

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=98.30  E-value=1.3e-05  Score=68.85  Aligned_cols=64  Identities=11%  Similarity=0.091  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281           34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAV   97 (165)
Q Consensus        34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i   97 (165)
                      ++.+.+++...+.+-.......+.++|.|.||+.|+||+|+++|.|++.+++.....+.-...+
T Consensus       165 ~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~  228 (296)
T PRK04375        165 LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSL  228 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555444555556777778999999999999999988766555444443333

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=98.01  E-value=0.00035  Score=60.83  Aligned_cols=53  Identities=9%  Similarity=0.170  Sum_probs=41.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHH
Q 039281           33 EITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLC   85 (165)
Q Consensus        33 ~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~   85 (165)
                      ..+...+++...+.+-.......++++|.|+|++.|++|+|++.|+|++.+..
T Consensus       167 ~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~  219 (306)
T PRK13362        167 QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI  219 (306)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence            34555666666666666666677889999999999999999999999888643

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.28  E-value=0.00084  Score=58.07  Aligned_cols=63  Identities=24%  Similarity=0.251  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 039281           47 CFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSK  109 (165)
Q Consensus        47 ~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~  109 (165)
                      +-+=+|..-||-+|.|.||+.||-|+++.+|+..+..++..++..+|..-.+.+.-.+.++.-
T Consensus       240 lnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~l  302 (359)
T KOG4581|consen  240 LNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFAL  302 (359)
T ss_pred             cchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344567789999999999999999999999999999999999999999988888776544443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=94.58  E-value=0.79  Score=39.70  Aligned_cols=58  Identities=14%  Similarity=0.074  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhhhhhcCC-cchhH-HhhHHHHHHHHHHHHHHHHHHHH
Q 039281           40 FATVFICCFCIASAFLKDLHDVDGDKEFGI-ETLSV-KLGKERVFWLCVYMLSIAYGAAV   97 (165)
Q Consensus        40 ~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi-~Tlav-~lG~~~~~~l~~~ll~~~y~~~i   97 (165)
                      .......++..+.+++||.-|.|-|++.+- |.+|. ++.+|.+...+..++.++.+..+
T Consensus        58 ~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~  117 (306)
T TIGR02056        58 CMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAF  117 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            334455677777889999999999987762 32322 35566666666555554444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=94.15  E-value=1.6  Score=36.70  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhh---HHHHHHHHHHHHHHH
Q 039281           41 ATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLG---KERVFWLCVYMLSIA   92 (165)
Q Consensus        41 ~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG---~~~~~~l~~~ll~~~   92 (165)
                      ...-..+...+-.++||.-|.|-|+++ .+.=|..-|   ++.+...+..+..++
T Consensus        42 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~   95 (279)
T PRK12884         42 GFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG   95 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            333445555667799999999999988 455555555   555655555444443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=93.79  E-value=0.88  Score=38.77  Aligned_cols=33  Identities=21%  Similarity=0.098  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhhhhhcCC
Q 039281           37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGI   69 (165)
Q Consensus        37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi   69 (165)
                      ..............+...+||+.|.|=||++--
T Consensus        48 ~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382          48 LLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            344444444566667779999999999999865

>PRK13595 ubiA prenyltransferase; Provisional

Probab=93.50  E-value=1.5  Score=38.45  Aligned_cols=74  Identities=18%  Similarity=0.051  Sum_probs=43.4

Q ss_pred             HHHHHHHHhhhhhhhhccccch-hHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhH---HhhHHHHHHHHHHH
Q 039281           13 VWFLFGTAYSVQKYVLGRPVEI-TRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSV---KLGKERVFWLCVYM   88 (165)
Q Consensus        13 ~slllgtaYS~~~~vlg~~~~~-~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav---~lG~~~~~~l~~~l   88 (165)
                      ...++|..++      |....+ |..+.....|..-....+..+||.-|.|-|+++.-+ =++   ++.++.+..+...+
T Consensus        29 ~~~~~G~~~~------g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~  101 (292)
T PRK13595         29 GTLVTGVWLT------GHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAV  101 (292)
T ss_pred             HHHHHHHHHh------cCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHH
Confidence            5566677665      222333 233444455556666778899999999999865432 232   45566555555444


Q ss_pred             HHHHH
Q 039281           89 LSIAY   93 (165)
Q Consensus        89 l~~~y   93 (165)
                      ...+.
T Consensus       102 ~~~~~  106 (292)
T PRK13595        102 LLLNA  106 (292)
T ss_pred             HHHHH
Confidence            44443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=91.49  E-value=1.8  Score=36.69  Aligned_cols=48  Identities=15%  Similarity=-0.017  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhccCChhhhhhcCCcchhH---HhhHHHHHHHHHHHHHHH
Q 039281           44 FICCFCIASAFLKDLHDVDGDKEFGIETLSV---KLGKERVFWLCVYMLSIA   92 (165)
Q Consensus        44 f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav---~lG~~~~~~l~~~ll~~~   92 (165)
                      -..++..+-+++||.-|.|-|++.+ ++=|+   ++-+|.+..++..+..++
T Consensus        46 ~~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~   96 (283)
T TIGR01476        46 AGPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG   96 (283)
T ss_pred             HHHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            3344566677999999999999765 33332   344566665555444333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=91.47  E-value=7  Score=32.97  Aligned_cols=48  Identities=10%  Similarity=0.107  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhccCChhhhhhcCCcchhHHhh---HHHHHHHHHHHHHHHH
Q 039281           45 ICCFCIASAFLKDLHDVDGDKEFGIETLSVKLG---KERVFWLCVYMLSIAY   93 (165)
Q Consensus        45 ~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG---~~~~~~l~~~ll~~~y   93 (165)
                      ..+...+-.++||.-|.|-||+.. +.=|..-|   +|.+...+..+..+..
T Consensus        47 ~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g~   97 (276)
T PRK12882         47 VFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAGV   97 (276)
T ss_pred             HHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence            344555566999999999999754 54454444   5666666555555443

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=90.53  E-value=2.1  Score=37.34  Aligned_cols=32  Identities=16%  Similarity=0.258  Sum_probs=21.0

Q ss_pred             HhccCChhhhhhcCCcchhHH---hhHHHHHHHHHH
Q 039281           55 LKDLHDVDGDKEFGIETLSVK---LGKERVFWLCVY   87 (165)
Q Consensus        55 ~KDi~DieGDr~~Gi~Tlav~---lG~~~~~~l~~~   87 (165)
                      +||..|.|-||.+ .++-|+-   +-+|.+..+...
T Consensus        72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~  106 (308)
T PRK12887         72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVII  106 (308)
T ss_pred             HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHH
Confidence            9999999999964 4666653   344444444443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.72  E-value=5.5  Score=33.43  Aligned_cols=29  Identities=14%  Similarity=0.052  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHhccCChhhhhhcCC
Q 039281           41 ATVFICCFCIASAFLKDLHDVDGDKEFGI   69 (165)
Q Consensus        41 ~~~f~~~f~~~i~i~KDi~DieGDr~~Gi   69 (165)
                      ......+...+...+||.-|.|-|+..+-
T Consensus        41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         41 LLLITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            33344566667889999999999987543

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.58  E-value=4.1  Score=34.66  Aligned_cols=81  Identities=21%  Similarity=0.187  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHH
Q 039281            6 PLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERV   81 (165)
Q Consensus         6 pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~   81 (165)
                      ...+....+.+.|.+.+.+.    ....+ ........-..+...+-.++||.-|.|-||+..   -|.+|. ++-+|.+
T Consensus        20 ~~~~l~~~~~~~g~~la~~~----~~~~~-~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a   94 (285)
T PRK12847         20 IGILLVFFPTLFGLLLASHS----LLPDI-SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQA   94 (285)
T ss_pred             HHHHHHHHHHHHHHHHHhCc----cCCcH-HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHH
Confidence            33444556666666654321    11111 112223333345566667999999999998633   233333 4555666


Q ss_pred             HHHHHHHHHH
Q 039281           82 FWLCVYMLSI   91 (165)
Q Consensus        82 ~~l~~~ll~~   91 (165)
                      ..++..++.+
T Consensus        95 ~~~~~~l~~~  104 (285)
T PRK12847         95 LILLFILLLI  104 (285)
T ss_pred             HHHHHHHHHH
Confidence            6555544433

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=89.47  E-value=4.4  Score=32.66  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhccCChhhhhhc
Q 039281           46 CCFCIASAFLKDLHDVDGDKEF   67 (165)
Q Consensus        46 ~~f~~~i~i~KDi~DieGDr~~   67 (165)
                      .+........||..|.|-||..
T Consensus        33 ~~~~~~~~~~Nd~~D~~~D~~~   54 (257)
T PF01040_consen   33 FLLQLAVYLLNDYFDYEEDRIH   54 (257)
T ss_pred             HHHHHHHHHhhChhhhhcCccc
Confidence            3666778899999999999995

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN02776 prenyltransferase

Probab=89.40  E-value=16  Score=32.84  Aligned_cols=94  Identities=14%  Similarity=-0.063  Sum_probs=47.3

Q ss_pred             CChhhhhhcCCcchhHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchh
Q 039281           59 HDVDGDKEFGIETLSVKL--GKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNT  136 (165)
Q Consensus        59 ~DieGDr~~Gi~Tlav~l--G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~  136 (165)
                      .|.|-|++.|++.+|+.-  |++.+..+......+.-...+..+.-..   .....+.+=.+-+..+++.-+-+..+|++
T Consensus       174 ~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~---~~~~~~~a~~l~~~~l~~~~~~~~~~~~~  250 (341)
T PLN02776        174 MCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT---SSPFALEAALLTAYLAASAASFYREPTNA  250 (341)
T ss_pred             HhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence            345578899999999854  5676666554444433322222221111   12222333333344444444445333322


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281          137 STFSFYMFIWKASDCTYILNQIPHAS  162 (165)
Q Consensus       137 ~i~sfY~fIWkLFy~EYll~P~~~~~  162 (165)
                             ...|+|+..-.-+|..+..
T Consensus       251 -------~ar~~F~~Sl~yL~~l~~~  269 (341)
T PLN02776        251 -------NARKMFHGSLLYLPAFMAL  269 (341)
T ss_pred             -------HHHHHHHHHHHHHHHHHHH
Confidence                   2466677666666666543

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=89.23  E-value=11  Score=32.42  Aligned_cols=82  Identities=12%  Similarity=0.041  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCC------cchhH-HhhHHH
Q 039281            8 VLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGI------ETLSV-KLGKER   80 (165)
Q Consensus         8 l~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi------~Tlav-~lG~~~   80 (165)
                      +.+-.++..+|+++.-..   ++...+..- .....-..+...+-+.+||..|.|-|+...-      |+++. ++-+|+
T Consensus        16 l~~s~~~v~lG~a~a~~~---~~~f~~~~~-ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~   91 (296)
T PRK05951         16 FVMTAIVAFFSIAYGYYL---FRSFDPLLG-ALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGH   91 (296)
T ss_pred             HHHHHHHHHHHHHHHHHh---cCCcCHHHH-HHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHH
Confidence            344456777888886322   122333222 2222333455566779999999555544432      33322 355677


Q ss_pred             HHHHHHHHHHHHH
Q 039281           81 VFWLCVYMLSIAY   93 (165)
Q Consensus        81 ~~~l~~~ll~~~y   93 (165)
                      +.+.+..+..++.
T Consensus        92 ~~~~~~~~~~ia~  104 (296)
T PRK05951         92 LRVLGIALGAIAL  104 (296)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666555443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=88.93  E-value=4.6  Score=34.22  Aligned_cols=51  Identities=10%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHhccCChhhhhhcC-CcchhH-HhhHHHHHHHHHHHHHHHH
Q 039281           43 VFICCFCIASAFLKDLHDVDGDKEFG-IETLSV-KLGKERVFWLCVYMLSIAY   93 (165)
Q Consensus        43 ~f~~~f~~~i~i~KDi~DieGDr~~G-i~Tlav-~lG~~~~~~l~~~ll~~~y   93 (165)
                      .-..+...+-.++||.-|.|-||+.. -|.+|. ++-+|.+...+..+..++.
T Consensus        44 l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~   96 (279)
T PRK09573         44 LVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL   96 (279)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence            33445566667999999999999764 233332 4556666666655544433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=88.90  E-value=4.2  Score=34.43  Aligned_cols=80  Identities=10%  Similarity=0.056  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHH
Q 039281            7 LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVF   82 (165)
Q Consensus         7 Ll~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~   82 (165)
                      .......+.+.|.+.+.+.    ....+ ........-..+...+-..+||.-|.|-|++..   -|.+|. ++-+|.+.
T Consensus        11 ~~~~~~~~~~~g~~la~~~----~~~~~-~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~   85 (280)
T TIGR01473        11 IISLLLITAFAGMWLAPGG----ALVNP-PLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREAL   85 (280)
T ss_pred             HHHHHHHHHHHHHHHhCCC----CCCCH-HHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHH
Confidence            3344445566666655321    11122 122333333445566667999999999999743   344433 45566666


Q ss_pred             HHHHHHHHH
Q 039281           83 WLCVYMLSI   91 (165)
Q Consensus        83 ~l~~~ll~~   91 (165)
                      ..+..++.+
T Consensus        86 ~~~~~~~~~   94 (280)
T TIGR01473        86 AFGLLLGVL   94 (280)
T ss_pred             HHHHHHHHH
Confidence            665544443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=88.54  E-value=8.5  Score=33.27  Aligned_cols=18  Identities=22%  Similarity=0.182  Sum_probs=15.2

Q ss_pred             HHhccCChhhhhhcCCcc
Q 039281           54 FLKDLHDVDGDKEFGIET   71 (165)
Q Consensus        54 i~KDi~DieGDr~~Gi~T   71 (165)
                      .+||.-|.|-||+...|.
T Consensus        63 ~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875         63 GVNDVFDADTDELNPKKD   80 (282)
T ss_pred             cchhhhhhhccccCCCcc
Confidence            379999999999887665

>PLN00012 chlorophyll synthetase; Provisional

Probab=88.26  E-value=15  Score=33.22  Aligned_cols=46  Identities=11%  Similarity=-0.047  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhccCChhhhhhcCCcchhHH---hhHHHHHHHHHHHHHHH
Q 039281           46 CCFCIASAFLKDLHDVDGDKEFGIETLSVK---LGKERVFWLCVYMLSIA   92 (165)
Q Consensus        46 ~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~---lG~~~~~~l~~~ll~~~   92 (165)
                      .+...+-.++||.-|.|-|++.+ +.=|+.   +.++.+......++..+
T Consensus       133 ~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~~~  181 (375)
T PLN00012        133 PFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLGG  181 (375)
T ss_pred             HHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHHHH
Confidence            44455567999999999998875 333433   33555555444444333

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=88.12  E-value=5.5  Score=33.62  Aligned_cols=41  Identities=12%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             HHHHHHHhccCChhhhhhcCCcchhHH---hhHHHHHHHHHHHHH
Q 039281           49 CIASAFLKDLHDVDGDKEFGIETLSVK---LGKERVFWLCVYMLS   90 (165)
Q Consensus        49 ~~~i~i~KDi~DieGDr~~Gi~Tlav~---lG~~~~~~l~~~ll~   90 (165)
                      ..+-.++||.-|.|-||.++ ++=|+-   +-++.+...+..+..
T Consensus        50 ~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~   93 (277)
T PRK12883         50 CSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA   93 (277)
T ss_pred             HHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence            35677999999999999754 444433   445556555544433

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=87.90  E-value=10  Score=32.34  Aligned_cols=79  Identities=11%  Similarity=-0.016  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHH
Q 039281            7 LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVF   82 (165)
Q Consensus         7 Ll~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~   82 (165)
                      ..+....+.+.|.+.+.+     +...+ ........-..+...+-..+||.-|.|-||+..   -|.+|. +..+|.+.
T Consensus        13 ~~~~~~~~~~~g~~la~~-----~~~~~-~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~   86 (279)
T PRK12869         13 VIWLLDLAAVAGYFLAAK-----HGVSW-LPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEAL   86 (279)
T ss_pred             HHHHHHHHHHHHHHHhcc-----CCCCH-HHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHH
Confidence            444555555666554422     11111 123333334445566677999999999999854   244443 45666666


Q ss_pred             HHHHHHHHH
Q 039281           83 WLCVYMLSI   91 (165)
Q Consensus        83 ~l~~~ll~~   91 (165)
                      .....++.+
T Consensus        87 ~~~~~~~~~   95 (279)
T PRK12869         87 AVGSALSAL   95 (279)
T ss_pred             HHHHHHHHH
Confidence            655544333

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=87.62  E-value=8.2  Score=33.70  Aligned_cols=50  Identities=18%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhccCChhhhhhcC---Ccchh-HHhhHHHHHHHHHHHHHHHHHH
Q 039281           46 CCFCIASAFLKDLHDVDGDKEFG---IETLS-VKLGKERVFWLCVYMLSIAYGA   95 (165)
Q Consensus        46 ~~f~~~i~i~KDi~DieGDr~~G---i~Tla-v~lG~~~~~~l~~~ll~~~y~~   95 (165)
                      ++.+.+..++||+-|.|=||++.   -|-+| =++.++.+...+..++.++.+.
T Consensus        56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~l  109 (295)
T PRK12324         56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLAL  109 (295)
T ss_pred             HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence            44556677999999999999962   23332 2456666666666555554433

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=86.73  E-value=4  Score=35.45  Aligned_cols=47  Identities=17%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhccCChhhhhhcC-Ccchh-HHhhHHHHHHHHHHHHHHHH
Q 039281           47 CFCIASAFLKDLHDVDGDKEFG-IETLS-VKLGKERVFWLCVYMLSIAY   93 (165)
Q Consensus        47 ~f~~~i~i~KDi~DieGDr~~G-i~Tla-v~lG~~~~~~l~~~ll~~~y   93 (165)
                      +...+..++||.-|.|-||+.+ -|.+| =++.++.+...+..++.++.
T Consensus        76 l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~  124 (314)
T PRK07566         76 LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL  124 (314)
T ss_pred             HHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence            3556667999999999999754 23222 24556666666555544433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=85.74  E-value=22  Score=30.64  Aligned_cols=88  Identities=20%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccCChhh--hhhcCCcchhHHhhHHHH
Q 039281            5 PPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFA-TVFICCFCIASAFLKDLHDVDG--DKEFGIETLSVKLGKERV   81 (165)
Q Consensus         5 ~pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~-~~f~~~f~~~i~i~KDi~DieG--Dr~~Gi~Tlav~lG~~~~   81 (165)
                      |+-+.+-.+..++|++++-..   ++  .+++....+ ...+..+-.+.+..||..|-+-  |++.-.+.......+|.+
T Consensus         8 p~tl~~s~~pv~lG~alA~~~---~~--~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~~~~v   82 (285)
T TIGR02235         8 PPLYSVAVMPILVGTAVAWGQ---GG--VFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLV   82 (285)
T ss_pred             hhHHHHHHHHHHHHHHHHHHc---CC--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCcHHHH
Confidence            344555567889999998432   22  333333222 2334556667789999999765  664211111111124555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 039281           82 FWLCVYMLSIAYGAAV   97 (165)
Q Consensus        82 ~~l~~~ll~~~y~~~i   97 (165)
                      .+.+..++.++....+
T Consensus        83 ~~~~~~~~~ia~~~g~   98 (285)
T TIGR02235        83 FWLANFFLLIGLVGIA   98 (285)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555444444333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=85.54  E-value=15  Score=31.52  Aligned_cols=46  Identities=13%  Similarity=0.114  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhccCChhhhhhcC---Ccchh-HHhhHHHHHHHHHHHHHH
Q 039281           46 CCFCIASAFLKDLHDVDGDKEFG---IETLS-VKLGKERVFWLCVYMLSI   91 (165)
Q Consensus        46 ~~f~~~i~i~KDi~DieGDr~~G---i~Tla-v~lG~~~~~~l~~~ll~~   91 (165)
                      .+...+-.++||+-|.|=||+..   -|.+| =++.+|.+...+..+..+
T Consensus        54 ~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~  103 (296)
T PRK04375         54 ALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVL  103 (296)
T ss_pred             HHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            34455556999999999999853   23333 345667776665554433

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=84.91  E-value=25  Score=31.14  Aligned_cols=48  Identities=25%  Similarity=0.452  Sum_probs=31.8

Q ss_pred             HHHHhccCChhhhhhcCCcchhH---HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281           52 SAFLKDLHDVDGDKEFGIETLSV---KLGKERVFWLCVYMLSIAYGAAVVVG  100 (165)
Q Consensus        52 i~i~KDi~DieGDr~~Gi~Tlav---~lG~~~~~~l~~~ll~~~y~~~i~~g  100 (165)
                      -.++||.-|.|-|+..+ ||=|+   ++-+|.+...+..+..++.+.++.++
T Consensus        66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~  116 (331)
T PRK12392         66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLG  116 (331)
T ss_pred             HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999754 44443   44467777777666666555444443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=84.86  E-value=2.6  Score=35.76  Aligned_cols=47  Identities=11%  Similarity=-0.007  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHhccCChhhhhhc---CCcchhH-HhhHHHHHHHHHH
Q 039281           41 ATVFICCFCIASAFLKDLHDVDGDKEF---GIETLSV-KLGKERVFWLCVY   87 (165)
Q Consensus        41 ~~~f~~~f~~~i~i~KDi~DieGDr~~---Gi~Tlav-~lG~~~~~~l~~~   87 (165)
                      ...-..+...+-.++||.-|.|-||+.   .-|.+|. ++.+|.+...+..
T Consensus        41 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~   91 (282)
T TIGR01475        41 ILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL   91 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence            333445666777799999999999986   2344443 4556666655543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=83.71  E-value=21  Score=31.15  Aligned_cols=82  Identities=22%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccCChh--hhhhcCCcchhHH--hhHHH
Q 039281            6 PLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMF-ATVFICCFCIASAFLKDLHDVD--GDKEFGIETLSVK--LGKER   80 (165)
Q Consensus         6 pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~-~~~f~~~f~~~i~i~KDi~Die--GDr~~Gi~Tlav~--lG~~~   80 (165)
                      +-+.+-.+..++|++++-..   ++  .+++...+ ......++-.+.+..||..|-+  -|++.- +. +++  ..+|.
T Consensus        22 ~tl~asl~pv~lG~a~a~~~---~~--~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~-~~-~~~~~~~~~~   94 (304)
T PRK07419         22 PMYSVAIMPILVGTAWALGE---TG--VFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF-HS-VVNLTGNKSL   94 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHc---CC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-cC-cccccCcHHH
Confidence            44455567889999998432   22  33333322 2234445566678999999988  566411 11 112  13666


Q ss_pred             HHHHHHHHHHHHHH
Q 039281           81 VFWLCVYMLSIAYG   94 (165)
Q Consensus        81 ~~~l~~~ll~~~y~   94 (165)
                      +.+++..++.++-+
T Consensus        95 v~~~~~~~~~~a~~  108 (304)
T PRK07419         95 VFWLANLFLLLGLL  108 (304)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666665555443

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=83.20  E-value=20  Score=30.89  Aligned_cols=44  Identities=9%  Similarity=-0.071  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHHHHHH
Q 039281           43 VFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVFWLCV   86 (165)
Q Consensus        43 ~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~~l~~   86 (165)
                      .-+.+...+-..+||.-|.|-|++..   -|.+|. ++.+|.+.....
T Consensus        46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~   93 (284)
T PRK12888         46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGAL   93 (284)
T ss_pred             HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence            33344555566999999999999874   344432 334455544443

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=81.95  E-value=34  Score=29.81  Aligned_cols=48  Identities=8%  Similarity=-0.002  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhccCChhhhhhcCC---cchhH-HhhHHHHHHHHHHHHHH
Q 039281           44 FICCFCIASAFLKDLHDVDGDKEFGI---ETLSV-KLGKERVFWLCVYMLSI   91 (165)
Q Consensus        44 f~~~f~~~i~i~KDi~DieGDr~~Gi---~Tlav-~lG~~~~~~l~~~ll~~   91 (165)
                      -..+.+.+-..+||.-|.|=||+...   |-+|. |+.++.+..++..+..+
T Consensus        55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~  106 (306)
T PRK13362         55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVA  106 (306)
T ss_pred             HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            34455667779999999999987543   44432 44566666665544433

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=81.94  E-value=14  Score=31.46  Aligned_cols=46  Identities=13%  Similarity=0.156  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhccCChhhhhhcCC-cchhH---HhhHHHHHHHHHHHHHH
Q 039281           46 CCFCIASAFLKDLHDVDGDKEFGI-ETLSV---KLGKERVFWLCVYMLSI   91 (165)
Q Consensus        46 ~~f~~~i~i~KDi~DieGDr~~Gi-~Tlav---~lG~~~~~~l~~~ll~~   91 (165)
                      .+...+-...||.-|.|-||+... +.=|+   ++.++.+......+..+
T Consensus        50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~   99 (281)
T TIGR01474        50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLV   99 (281)
T ss_pred             HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            344556679999999999986542 12232   34455565555544433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00