Citrus Sinensis ID: 039296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MGKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFISPASDFNYPAK
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccccccccHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccHcccccc
Coil and Loop (DISEMBL)
mgkdlpgiatgnwgcgafggdpELKAIIQWLAAsqasrpfvLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSqrlngrtnLGFFAWllpsltshnfispasdfnypak
Flexible Loop (DISEMBL)
mgkdlpgiatgNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTShnfispasdfnypak
Low Complexity Region (SEG)
MGKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFISPASDFNYPAK
Disordered region (IsUnstruct)
******GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFI***********
Disordered Region (DISOPRED)
*****PG*ATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSS******T*LGFFAWLLPSLT****************
Disordered Region (DISEMBL)
MGKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFISPASDFNYPAK
Disordered Region (DISPRO)
***DLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTS***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFISPASDFNYPAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9SKB3	548	Poly(ADP-ribose) glycohyd	yes	no	0.836	0.177	0.742	4e-41
Q8VYA1	522	Probable poly(ADP-ribose)	no	no	0.818	0.181	0.631	6e-32
O46043	768	Poly(ADP-ribose) glycohyd	yes	no	0.620	0.093	0.473	1e-12
O02776	977	Poly(ADP-ribose) glycohyd	yes	no	0.672	0.079	0.4	1e-11
Q86W56	976	Poly(ADP-ribose) glycohyd	yes	no	0.672	0.079	0.412	3e-07
O88622	969	Poly(ADP-ribose) glycohyd	yes	no	0.672	0.080	0.387	6e-06
Q867X0	781	Poly(ADP-ribose) glycohyd	no	no	0.336	0.049	0.575	5e-05
Q9QYM2	972	Poly(ADP-ribose) glycohyd	yes	no	0.560	0.066	0.426	6e-05
Q2M3C7	1700	A-kinase anchor protein S	no	no	0.637	0.043	0.291	0.0001

>sp|Q9SKB3|PARG1_ARATH Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 87/97 (89%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCG FGGDPELKA IQWLAASQ  RPF+ YYTFG++AL+NLDQ+T+WILSH+W
Sbjct: 446 GVATGNWGCGVFGGDPELKATIQWLAASQTRRPFISYYTFGVEALRNLDQVTKWILSHKW 505

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
           TV DLWNMM+EYS+QRL  +T++GFF+WLLPSL + N
Sbjct: 506 TVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLATTN 542

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase (By similarity). Involved in establishing period length of the circadian oscillator. May regulate post-translational poly(ADP-ribosyl)ation of an oscillator component.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4EC: 3

>sp|Q8VYA1|PARG2_ARATH Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2 SV=1

 Score =  135 bits (340), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 77/95 (81%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCG FGGDPELK ++QWLA SQ+ RPF+ YYTFG+ ALQNL+Q+ + +   E 
Sbjct: 428 GVATGNWGCGVFGGDPELKIMLQWLAISQSGRPFMSYYTFGLQALQNLNQVIEMVALQEM 487

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTS 101
           TV DLW  +VEYSS+RL+ RT LGFF+WL+ SL++
Sbjct: 488 TVGDLWKKLVEYSSERLSRRTWLGFFSWLMTSLST 522

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|O46043|PARG_DROME Poly(ADP-ribose) glycohydrolase OS=Drosophila melanogaster GN=Parg PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 4/76 (5%)

Query: 6   PGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWIL--S 63
           PG+ATGNWGCGAFGGD  LKA++Q +  +Q  RP   YYTFG    ++ D    W+L  +
Sbjct: 491 PGVATGNWGCGAFGGDSYLKALLQLMVCAQLGRPLA-YYTFGNVEFRD-DFHEMWLLFRN 548

Query: 64  HEWTVRDLWNMMVEYS 79
              TV+ LW+++  YS
Sbjct: 549 DGTTVQQLWSILRSYS 564

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism is required for maintenance of the normal function of neuronal cells.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase OS=Bos taurus GN=PARG PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 56/80 (70%), Gaps = 2/80 (2%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct: 861 ENLSAVATGNWGCGAFGGDARLKALIQILAAAVAERD-VVYFTFGDSELMRDIYSMHTFL 919

Query: 62  LSHEWTVRDLWNMMVEYSSQ 81
              + TV +++ +++ Y ++
Sbjct: 920 TERKLTVGEVYKLLLRYYNE 939

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase OS=Homo sapiens GN=PARG PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 2/80 (2%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct: 860 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 918

Query: 62  LSHEWTVRDLWNMMVEYSSQ 81
              + TV D++ +++ Y ++
Sbjct: 919 TERKLTVGDVYKLLLRYYNE 938

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase OS=Mus musculus GN=Parg PE=1 SV=2

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct: 853 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHTFL 911

Query: 62  LSHEWTVRDLWNMMVEYSSQ 81
              +  V  ++ +++ Y ++
Sbjct: 912 TERKLDVGKVYKLLLRYYNE 931

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 OS=Caenorhabditis elegans GN=pme-3 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 8   IATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG 47
           I TG WGCGAF GD  LK IIQ +AA  A RP + + +FG
Sbjct: 674 IVTGWWGCGAFNGDKPLKFIIQVIAAGVADRP-LHFCSFG 712

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase OS=Rattus norvegicus GN=Parg PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 17/82 (20%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWIL 62
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG   L           
Sbjct: 856 ENLSAVATGNWGCGAFGGDARLKALIQLLAAAAAERD-VVYFTFGDSEL----------- 903

Query: 63  SHEWTVRDLWNMMVEYSSQRLN 84
                +RD+++M    + ++LN
Sbjct: 904 -----MRDIYSMHTFLTERKLN 920

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q2M3C7|SPKAP_HUMAN A-kinase anchor protein SPHKAP OS=Homo sapiens GN=SPHKAP PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 21   DPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEY-- 78
            D EL+A +QW+AAS+   P + +     + ++    + Q +    W V D+++ +V+Y  
Sbjct: 1621 DAELRATLQWIAASELGIPTIYFKKSQENRIEKFLDVVQLVHRKSWKVGDIFHAVVQYCK 1680

Query: 79   -SSQRLNGRTNLGFFAWLL 96
               ++ +GR  L  F WLL
Sbjct: 1681 MHEEQKDGR--LSLFDWLL 1697

Anchoring protein that binds preferentially to the type I regulatory subunit of c-AMP-dependent protein kinase (PKA type I) and targets it to distinct subcellular compartments. May act as a converging factor linking cAMP and sphingosine signaling pathways. Plays a regulatory role in the modulation of SPHK1.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
255585301	553	poly(ADP-ribose) glycohydrolase, putativ	0.870	0.182	0.792	1e-42
297826639	557	hypothetical protein ARALYDRAFT_482111 [	0.836	0.174	0.752	4e-40
18402797	548	Poly(ADP-ribose) glycohydrolase 1 [Arabi	0.836	0.177	0.742	2e-39
145330328	547	Poly(ADP-ribose) glycohydrolase 1 [Arabi	0.836	0.177	0.742	2e-39
62321654	547	poly(ADP-ribose) like glycohydrolase [Ar	0.836	0.177	0.742	2e-39
224092826	527	predicted protein [Populus trichocarpa]	0.801	0.176	0.789	5e-39
224117682	548	predicted protein [Populus trichocarpa]	0.836	0.177	0.762	2e-38
225434243	562	PREDICTED: poly(ADP-ribose) glycohydrola	0.818	0.169	0.736	3e-38
357457741	529	Poly(ADP-ribose) glycohydrolase [Medicag	0.836	0.183	0.711	2e-36
356538602	547	PREDICTED: poly(ADP-ribose) glycohydrola	0.827	0.175	0.697	3e-36

>gi|255585301|ref|XP_002533349.1| poly(ADP-ribose) glycohydrolase, putative [Ricinus communis] gi|223526814|gb|EEF29034.1| poly(ADP-ribose) glycohydrolase, putative [Ricinus communis]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 89/101 (88%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWIL 62
           +D  GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG +AL+NLD+++QWIL
Sbjct: 447 EDRVGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGTEALRNLDKVSQWIL 506

Query: 63  SHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
           SHEWTV DLWNM+ EYS QR N  T +GFFAWLLPSL +H 
Sbjct: 507 SHEWTVGDLWNMLEEYSFQRFNRETKVGFFAWLLPSLITHE 547

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826639|ref|XP_002881202.1| hypothetical protein ARALYDRAFT_482111 [Arabidopsis lyrata subsp. lyrata] gi|297327041|gb|EFH57461.1| hypothetical protein ARALYDRAFT_482111 [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 87/97 (89%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCG FGGDPELKA IQWLAASQ  RPF+ YYTFG++ALQ+LDQ+T+WI+SH+W
Sbjct: 455 GVATGNWGCGVFGGDPELKATIQWLAASQTRRPFISYYTFGVEALQHLDQVTKWIISHKW 514

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
           TV DLWNMM+EYS+QRL  +TNLGFF+WLLPSL + N
Sbjct: 515 TVGDLWNMMLEYSAQRLYKQTNLGFFSWLLPSLATTN 551

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402797|ref|NP_565730.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana] gi|75206423|sp|Q9SKB3.2|PARG1_ARATH RecName: Full=Poly(ADP-ribose) glycohydrolase 1 gi|14701908|gb|AAK72256.1|AF394690_1 poly(ADP-ribose) glycohydrolase [Arabidopsis thaliana] gi|20197842|gb|AAD32285.2| putative poly(ADP-ribose) glycohydrolase [Arabidopsis thaliana] gi|330253503|gb|AEC08597.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 87/97 (89%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCG FGGDPELKA IQWLAASQ  RPF+ YYTFG++AL+NLDQ+T+WILSH+W
Sbjct: 446 GVATGNWGCGVFGGDPELKATIQWLAASQTRRPFISYYTFGVEALRNLDQVTKWILSHKW 505

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
           TV DLWNMM+EYS+QRL  +T++GFF+WLLPSL + N
Sbjct: 506 TVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLATTN 542

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145330328|ref|NP_001077989.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana] gi|330253504|gb|AEC08598.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 87/97 (89%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCG FGGDPELKA IQWLAASQ  RPF+ YYTFG++AL+NLDQ+T+WILSH+W
Sbjct: 445 GVATGNWGCGVFGGDPELKATIQWLAASQTRRPFISYYTFGVEALRNLDQVTKWILSHKW 504

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
           TV DLWNMM+EYS+QRL  +T++GFF+WLLPSL + N
Sbjct: 505 TVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLATTN 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62321654|dbj|BAD95273.1| poly(ADP-ribose) like glycohydrolase [Arabidopsis thaliana]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 87/97 (89%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCG FGGDPELKA IQWLAASQ  RPF+ YYTFG++AL+NLDQ+T+WILSH+W
Sbjct: 445 GVATGNWGCGVFGGDPELKATIQWLAASQTRRPFISYYTFGVEALRNLDQVTKWILSHKW 504

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
           TV DLWNMM+EYS+QRL  +T++GFF+WLLPSL + N
Sbjct: 505 TVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLATTN 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092826|ref|XP_002309711.1| predicted protein [Populus trichocarpa] gi|222852614|gb|EEE90161.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/95 (78%), Positives = 83/95 (87%), Gaps = 2/95 (2%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQI--TQWILSH 64
           GIATGNWGCGAFGGDPELK+IIQWLAASQA RP VLYYTFG+ +LQNL+Q+  ++WIL H
Sbjct: 433 GIATGNWGCGAFGGDPELKSIIQWLAASQALRPSVLYYTFGLKSLQNLNQVLLSRWILLH 492

Query: 65  EWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL 99
            WTV DLW M+VEYSSQR N  TNLGFFAWLLPSL
Sbjct: 493 GWTVGDLWYMLVEYSSQRFNKETNLGFFAWLLPSL 527

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117682|ref|XP_002331605.1| predicted protein [Populus trichocarpa] gi|222874001|gb|EEF11132.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 84/97 (86%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWIL 62
           +D  GIATGNWGCGAFGGDPELK +IQWLAASQA+R  V YY  GI +LQNL+Q++QWIL
Sbjct: 452 EDKIGIATGNWGCGAFGGDPELKTMIQWLAASQAARRSVSYYALGIKSLQNLNQVSQWIL 511

Query: 63  SHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL 99
           SHEWTV DLWNM+VEYSS+R N  TNLGFFAWLLP+L
Sbjct: 512 SHEWTVGDLWNMLVEYSSRRFNKETNLGFFAWLLPTL 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434243|ref|XP_002280371.1| PREDICTED: poly(ADP-ribose) glycohydrolase 1 [Vitis vinifera] gi|296084375|emb|CBI24763.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 85/95 (89%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ TGNWGCGAFGGDPELK IIQWLAASQA RPF+ Y+TFG++AL+ LD++ QWILSH+W
Sbjct: 458 GVVTGNWGCGAFGGDPELKTIIQWLAASQALRPFISYHTFGVEALKTLDKVIQWILSHKW 517

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTS 101
           TV DLW+M+VEYS+QRL G T+LGFF WLLPSL++
Sbjct: 518 TVGDLWDMLVEYSTQRLRGETSLGFFTWLLPSLSA 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457741|ref|XP_003599151.1| Poly(ADP-ribose) glycohydrolase [Medicago truncatula] gi|355488199|gb|AES69402.1| Poly(ADP-ribose) glycohydrolase [Medicago truncatula]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCGAFGGDPE+K IIQWLAASQA RPF+ YYTFG  ALQNLD+++ WILS  W
Sbjct: 429 GVATGNWGCGAFGGDPEVKTIIQWLAASQAGRPFIAYYTFGSGALQNLDKVSCWILSQGW 488

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
           TV DLWNM+VEYS+ R  G TN+GF  WLLPS+  H+
Sbjct: 489 TVGDLWNMLVEYSTSRSKGETNVGFLQWLLPSIYDHD 525

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538602|ref|XP_003537791.1| PREDICTED: poly(ADP-ribose) glycohydrolase 1-like [Glycine max]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 79/96 (82%)

Query: 7   GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
           G+ATGNWGCGAFGGDPE+K IIQWLAASQA RPF+ YYTFG++ALQ+LD++  WILS  W
Sbjct: 442 GVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYTFGLEALQSLDEVAHWILSQRW 501

Query: 67  TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSH 102
           TV DLWNM++EYS  R  G TN+GF  WLLPS+  H
Sbjct: 502 TVGDLWNMLIEYSINRSKGETNVGFLQWLLPSIYGH 537

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2045243	548	TEJ "Sanskrit for 'bright'" [A	0.870	0.184	0.725	4.2e-40
UNIPROTKB|H0Y834	192	PARG "Poly(ADP-ribose) glycohy	0.672	0.406	0.412	5.6e-13
FB|FBgn0023216	768	Parg "Poly(ADP-ribose) glycohy	0.620	0.093	0.473	1.2e-12
UNIPROTKB|F1NKA8	896	PARG "Uncharacterized protein"	0.672	0.087	0.412	2.5e-12
UNIPROTKB|F1NY76	904	PARG "Uncharacterized protein"	0.672	0.086	0.412	2.6e-12
UNIPROTKB|J9NTQ1	893	PARG "Uncharacterized protein"	0.965	0.125	0.347	3.2e-12
UNIPROTKB|E2REC3	976	PARG "Uncharacterized protein"	0.965	0.114	0.347	3.6e-12
UNIPROTKB|Q86W56	976	PARG "Poly(ADP-ribose) glycohy	0.672	0.079	0.412	1.2e-11
ZFIN|ZDB-GENE-090313-286	609	pargl "poly (ADP-ribose) glyco	0.862	0.164	0.368	1.7e-11
DICTYBASE|DDB_G0277943	658	parG "poly (ADP-ribose) glycoh	0.75	0.132	0.430	1.9e-11

TAIR|locus:2045243 TEJ "Sanskrit for 'bright'" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 74/102 (72%), Positives = 90/102 (88%)

Query:     7 GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEW 66
             G+ATGNWGCG FGGDPELKA IQWLAASQ  RPF+ YYTFG++AL+NLDQ+T+WILSH+W
Sbjct:   446 GVATGNWGCGVFGGDPELKATIQWLAASQTRRPFISYYTFGVEALRNLDQVTKWILSHKW 505

Query:    67 TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL-TSHNFISP 107
             TV DLWNMM+EYS+QRL  +T++GFF+WLLPSL T++  I P
Sbjct:   506 TVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLATTNKAIQP 547

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090332 "stomatal closure" evidence=IMP

UNIPROTKB|H0Y834 PARG "Poly(ADP-ribose) glycohydrolase" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 33/80 (41%), Positives = 56/80 (70%)

Query:     3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
             ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct:    76 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 134

Query:    62 LSHEWTVRDLWNMMVEYSSQ 81
                + TV D++ +++ Y ++
Sbjct:   135 TERKLTVGDVYKLLLRYYNE 154

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

FB|FBgn0023216 Parg "Poly(ADP-ribose) glycohydrolase" [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/76 (47%), Positives = 48/76 (63%)

Query:     6 PGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHE 65
             PG+ATGNWGCGAFGGD  LKA++Q +  +Q  RP   YYTFG    ++ D    W+L   
Sbjct:   491 PGVATGNWGCGAFGGDSYLKALLQLMVCAQLGRPLA-YYTFGNVEFRD-DFHEMWLLFRN 548

Query:    66 --WTVRDLWNMMVEYS 79
                TV+ LW+++  YS
Sbjct:   549 DGTTVQQLWSILRSYS 564

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=ISS;IMP;NAS

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0035065 "regulation of histone acetylation" evidence=IMP

GO:0006342 "chromatin silencing" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0051457 "maintenance of protein location in nucleus" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0043484 "regulation of RNA splicing" evidence=IMP

GO:0030576 "Cajal body organization" evidence=IMP

GO:0036099 "female germ-line stem cell maintenance" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1NKA8 PARG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 33/80 (41%), Positives = 56/80 (70%)

Query:     3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
             ++L  IATGNWGCGAFGGD  LKA+IQ LAA+++ R  V Y+TFG ++ ++++  +  ++
Sbjct:   777 QNLSAIATGNWGCGAFGGDSRLKALIQILAAAESGRDIV-YFTFGDVELMRDIYSMHTFL 835

Query:    62 LSHEWTVRDLWNMMVEYSSQ 81
                  TV D++ +++ Y ++
Sbjct:   836 CEKNQTVGDIYRLLLRYYNE 855

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|F1NY76 PARG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 33/80 (41%), Positives = 56/80 (70%)

Query:     3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
             ++L  IATGNWGCGAFGGD  LKA+IQ LAA+++ R  V Y+TFG ++ ++++  +  ++
Sbjct:   785 QNLSAIATGNWGCGAFGGDSRLKALIQILAAAESGRDIV-YFTFGDVELMRDIYSMHTFL 843

Query:    62 LSHEWTVRDLWNMMVEYSSQ 81
                  TV D++ +++ Y ++
Sbjct:   844 CEKNQTVGDIYRLLLRYYNE 863

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016045 "detection of bacterium" evidence=IEA

UNIPROTKB|J9NTQ1 PARG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query:     3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
             ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct:   777 ENLSAVATGNWGCGAFGGDARLKALIQILAAAVADRD-VVYFTFGDSELMRDIYSVHTFL 835

Query:    62 LSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFISPASDFNYPAK 116
                + TV +++ +++ Y ++     +  G    L P +  H   S A   N P +
Sbjct:   836 TERKLTVGEIYKLLLRYYNEECRNCSTPGPDIKLYPFIY-HAVESCAETSNQPGQ 889

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

UNIPROTKB|E2REC3 PARG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query:     3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
             ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct:   860 ENLSAVATGNWGCGAFGGDARLKALIQILAAAVADRD-VVYFTFGDSELMRDIYSVHTFL 918

Query:    62 LSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFISPASDFNYPAK 116
                + TV +++ +++ Y ++     +  G    L P +  H   S A   N P +
Sbjct:   919 TERKLTVGEIYKLLLRYYNEECRNCSTPGPDIKLYPFIY-HAVESCAETSNQPGQ 972

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

UNIPROTKB|Q86W56 PARG "Poly(ADP-ribose) glycohydrolase" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 33/80 (41%), Positives = 56/80 (70%)

Query:     3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
             ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct:   860 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 918

Query:    62 LSHEWTVRDLWNMMVEYSSQ 81
                + TV D++ +++ Y ++
Sbjct:   919 TERKLTVGDVYKLLLRYYNE 938

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016045 "detection of bacterium" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

ZFIN|ZDB-GENE-090313-286 pargl "poly (ADP-ribose) glycohydrolase, like" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 38/103 (36%), Positives = 58/103 (56%)

Query:     2 GKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQN-LDQITQW 60
             G+    IATGNWGCGAF GDP+LKA++Q +AA+   R  V Y+TFG   L N L ++   
Sbjct:   505 GQPKTAIATGNWGCGAFRGDPKLKALLQLMAAAVVDRD-VAYFTFGNTHLANELQKMHDI 563

Query:    61 ILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHN 103
             +   + TV  L+ ++ +Y       RT    + ++  ++  HN
Sbjct:   564 LTQRKVTVGKLYELLKDYCKHYERTRTPTDLYRFIRDNI-GHN 605

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

DICTYBASE|DDB_G0277943 parG "poly (ADP-ribose) glycohydrolase" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query:     6 PGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWI-LSH 64
             P +ATGNWGCG FGGD  LK+IIQ ++ SQA R  V Y++FG D  +  D++TQ I   H
Sbjct:   564 PPVATGNWGCGVFGGDKHLKSIIQLMSGSQAGRDLV-YFSFG-DQ-EFTDELTQMISFLH 620

Query:    65 --EWTVRDLWNMMVEYSSQRLNGRTNLGFFAWL 95
               + TV  L+  + EY     + ++N   F++L
Sbjct:   621 LKKVTVGGLYKALWEYYKLISHTKSNFKLFSYL 653

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA;ISS

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKB3	PARG1_ARATH	3, ., 2, ., 1, ., 1, 4, 3	0.7422	0.8362	0.1770	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__1171__AT2G31870.2 annotation not avaliable (557 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
pfam05028	339	pfam05028, PARG_cat, Poly (ADP-ribose) glycohydrol	2e-27

>gnl|CDD|218390 pfam05028, PARG_cat, Poly (ADP-ribose) glycohydrolase (PARG)

 Score =  102 bits (256), Expect = 2e-27
 Identities = 41/56 (73%), Positives = 47/56 (83%), Gaps = 1/56 (1%)

Query: 1   MGKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQ 56
             + LPGIATGNWGCGAFGGDPELK +IQW+AASQA RP + YYTFG + LQNL+Q
Sbjct: 285 SSRPLPGIATGNWGCGAFGGDPELKFLIQWIAASQAGRPLI-YYTFGDEELQNLNQ 339

Poly(ADP-ribose) glycohydrolase (PARG), is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death. Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PF05028	340	PARG_cat: Poly (ADP-ribose) glycohydrolase (PARG);	99.9
KOG2064	517	consensus Poly(ADP-ribose) glycohydrolase [Signal	99.82
PF05716	685	AKAP_110: A-kinase anchor protein 110 kDa (AKAP 11	99.82
smart00807	851	AKAP_110 A-kinase anchor protein 110 kDa. This fam	99.72
COG4295	285	Uncharacterized protein conserved in bacteria [Fun	96.02
TIGR02452	266	conserved hypothetical protein TIGR02452. Members	95.07

>PF05028 PARG_cat: Poly (ADP-ribose) glycohydrolase (PARG); InterPro: IPR007724 Poly(ADP-ribose) glycohydrolase (PARG) is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death []

Probab=99.90  E-value=1.2e-24  Score=177.65  Aligned_cols=49  Identities=73%  Similarity=1.346  Sum_probs=37.7

Q ss_pred             CCceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHH
Q 039296            5 LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNL   54 (116)
Q Consensus         5 ~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l   54 (116)
                      ..+|+|||||||||||||+||++|||||||+||||++ ||||+|+++.+.
T Consensus       290 ~~~I~TGnWGCGaFgGd~~lK~lIQ~lAas~a~r~l~-Y~tf~~~~l~~~  338 (340)
T PF05028_consen  290 IPPIATGNWGCGAFGGDPQLKFLIQWLAASLAGRPLV-YYTFGDEELANK  338 (340)
T ss_dssp             S--EEEESTTCCCC-B-HHHHHHHHHHHHHHCT--EE-EE-TT-HHHHHH
T ss_pred             cceEecCCcCccccCCCHHHHHHHHHHHHHhcCCCeE-EEecChHHHHhh
Confidence            3469999999999999999999999999999999965 999999988643

; GO: 0004649 poly(ADP-ribose) glycohydrolase activity, 0005975 carbohydrate metabolic process; PDB: 4FC2_D 3UEL_C 3UEK_A.

>KOG2064 consensus Poly(ADP-ribose) glycohydrolase [Signal transduction mechanisms]

Probab=99.82  E-value=1.2e-20  Score=159.57  Aligned_cols=78  Identities=44%  Similarity=0.691  Sum_probs=70.9

Q ss_pred             CCCCCc-----eeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHH-HHHHHHHHHHhCCccHHHHHHHH
Q 039296            2 GKDLPG-----IATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQ-NLDQITQWILSHEWTVRDLWNMM   75 (116)
Q Consensus         2 ~~~~~~-----I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~-~l~~v~~~l~~k~~tVgdL~~~L   75 (116)
                      |+++++     |+||+||||||+|||.||++||||||.+++||+..||||+|++++ ..+++....+...+|+++|+-.|
T Consensus       401 ~~~~~~~~~~~i~~~~wgcgaf~gd~~lkailq~~~a~q~~RPf~sy~tFG~~eL~~~~~~~~~~~~~d~v~~~~l~~~i  480 (517)
T KOG2064|consen  401 GFSNIPGSRWEIATGWWGCGAFRGDPPLKAILQVLVAGQARRPFTSYYTFGDEELRNLCQEMLTLFRNDMVTIGQLLPII  480 (517)
T ss_pred             CCCCCCcccchhhcccccccccCCCcHHHHHHHHHHHhhcCCchhheeeccHHHHHHHHHHHHHHHHhccchHhhhhHHH
Confidence            556667     999999999999999999999999999999998779999999995 57888899999999999999999


Q ss_pred             HHHH
Q 039296           76 VEYS   79 (116)
Q Consensus        76 ~~y~   79 (116)
                      ..+.
T Consensus       481 ~S~~  484 (517)
T KOG2064|consen  481 CSQP  484 (517)
T ss_pred             hcCC
Confidence            7664

>PF05716 AKAP_110: A-kinase anchor protein 110 kDa (AKAP 110); InterPro: IPR018292 This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences

Probab=99.82  E-value=3.8e-20  Score=159.16  Aligned_cols=80  Identities=30%  Similarity=0.581  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhc-----CCCcchhHHh
Q 039296           20 GDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLN-----GRTNLGFFAW   94 (116)
Q Consensus        20 GD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~~-----~~~~~~lf~w   94 (116)
                      .|+||+++|||||||++++|.|+|...+|.++++|.++.+++++|+|+||||++++++||+.++.     ...+.+||||
T Consensus       601 ~d~QLrAVLQWIAASEl~VP~LYF~~~~e~~leKL~qvs~ra~EKgwkVGDLLQAVLkYcke~Q~dea~g~~~rksLfDW  680 (685)
T PF05716_consen  601 QDKQLRAVLQWIAASELNVPMLYFRKDDEGNLEKLPQVSARAREKGWKVGDLLQAVLKYCKERQLDEAVGNVTRKSLFDW  680 (685)
T ss_pred             CcHHHHHHHHHHHHhhcCCceEEEecCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhhhhhcccccccHHHH
Confidence            68999999999999999999874334556778999999999999999999999999999987542     3478899999


Q ss_pred             hhhhh
Q 039296           95 LLPSL   99 (116)
Q Consensus        95 Ll~~l   99 (116)
                      ||++|
T Consensus       681 LL~Nl  685 (685)
T PF05716_consen  681 LLENL  685 (685)
T ss_pred             HhhhC
Confidence            99986

Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction []. This entry represents a sub group of the A-kinase anschor 110kDa protein.

>smart00807 AKAP_110 A-kinase anchor protein 110 kDa

Probab=99.72  E-value=1.9e-17  Score=143.46  Aligned_cols=82  Identities=23%  Similarity=0.464  Sum_probs=71.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCeEeeeccCh-hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhc-----CCCcch
Q 039296           17 AFGGDPELKAIIQWLAASQASRPFVLYYTFGI-DALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLN-----GRTNLG   90 (116)
Q Consensus        17 aFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d-~~l~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~~-----~~~~~~   90 (116)
                      .---|+||+++|||||||++++|.| ||.-.+ ..+++|.++...+.+|+|+||||++.+++||++++.     ..++.+
T Consensus       764 p~~qDkQLrAvLQWIAASE~nVP~L-YF~~s~e~~~eKLlqVSaka~EKGwsVGDLLQaVlkY~KerQ~DEav~~~~rkS  842 (851)
T smart00807      764 DTVQNKQLQAVLQWVAASELNVPIL-YFAGDDEGIQEKLLQLSAKAVEKGYSVGEVLQSVLRYEKERQLDEAVGNVTRLQ  842 (851)
T ss_pred             ccccchhhhhHHHHHHHhhcCCceE-EEecCcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhchhhhhccccccc
Confidence            3456899999999999999999976 766665 567899999999999999999999999999988762     347899


Q ss_pred             hHHhhhhhh
Q 039296           91 FFAWLLPSL   99 (116)
Q Consensus        91 lf~wLl~~l   99 (116)
                      ||||||.+|
T Consensus       843 LfDWLL~nL  851 (851)
T smart00807      843 LLDWLMANL  851 (851)
T ss_pred             HHHHHhhcC
Confidence            999999876

This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction PUBMED:10319321.

>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.02  E-value=0.0032  Score=50.29  Aligned_cols=20  Identities=40%  Similarity=0.996  Sum_probs=17.0

Q ss_pred             CceeccccCCccCCCCHHHH
Q 039296            6 PGIATGNWGCGAFGGDPELK   25 (116)
Q Consensus         6 ~~I~TGnWGCGaFgGD~qLK   25 (116)
                      ..++-|-||||+|++||---
T Consensus       219 ~alVLGAwGCGVFrNdPA~V  238 (285)
T COG4295         219 KALVLGAWGCGVFRNDPADV  238 (285)
T ss_pred             CeEEEcccccccccCCHHHH
Confidence            35788999999999999654

>TIGR02452 conserved hypothetical protein TIGR02452

Probab=95.07  E-value=0.013  Score=47.15  Aligned_cols=28  Identities=32%  Similarity=0.881  Sum_probs=21.6

Q ss_pred             ceeccccCCccCCCCHHHHHHHHHHHHHhc
Q 039296            7 GIATGNWGCGAFGGDPELKAIIQWLAASQA   36 (116)
Q Consensus         7 ~I~TGnWGCGaFgGD~qLK~lIQwiAAS~A   36 (116)
                      .++-|-||||+|++||+  .+-++.+--+.
T Consensus       208 ~LVLGA~GCG~f~N~p~--~VA~~f~evL~  235 (266)
T TIGR02452       208 ALVLGAWGCGVFGNDPA--EVAKIFHDLLS  235 (266)
T ss_pred             EEEECCccccccCCCHH--HHHHHHHHHhc
Confidence            57889999999999997  55555555554

Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
4a0d_A	531	Structure Of Unliganded Human Parg Catalytic Domain		3e-08
4b1j_A	531	Structure Of Human Parg Catalytic Domain In Complex		3e-08
4b1h_A	531	Structure Of Human Parg Catalytic Domain In Complex		3e-08
4b1g_A	531	Structure Of Unliganded Human Parg Catalytic Domain		7e-08
4fc2_A	521	Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohy		1e-06
3uek_A	588	Crystal Structure Of The Catalytic Domain Of Rat Po		5e-06
4epp_A	477	Canonical Poly(Adp-Ribose) Glycohydrolase From Tetr		1e-05
4epq_A	477	Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhi		1e-05

>pdb|4A0D|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain Length = 531

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 473
Query: 62  LSHEWTVRDLWNMMVEYSSQ 81
              + TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493

>pdb|4B1J|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With Adp-hpd Length = 531

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 473
Query: 62  LSHEWTVRDLWNMMVEYSSQ 81
              + TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493

>pdb|4B1H|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With Adp-ribose Length = 531

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG  + ++++  +  ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 473
Query: 62  LSHEWTVRDLWNMMVEYSSQ 81
              + TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493

>pdb|4B1G|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain Length = 531

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG   L +++     ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELXRDIYSXHIFL 473
Query: 62  LSHEWTVRDLWNMMVEYSSQ 81
              + TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493

>pdb|4FC2|A Chain A, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase (Parg) Catalytic Domain Length = 521

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG 47
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFG 458

>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly (Adp-Ribose) Glycohydrolase Length = 588

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 17/82 (20%)
Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWIL 62
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V+Y+TFG   L           
Sbjct: 472 ENLSAVATGNWGCGAFGGDARLKALIQLLAAAAAERD-VVYFTFGDSEL----------- 519
Query: 63  SHEWTVRDLWNMMVEYSSQRLN 84
                +RD+++M    + ++LN
Sbjct: 520 -----MRDIYSMHTFLTERKLN 536

>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena Thermophila. Length = 477

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5   LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVL 42
           L  I+TG WGCGAF G  +LK  IQW+A+S++++  ++
Sbjct: 378 LKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKKMII 415

>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor Complex From Tetrahymena Thermophila Length = 477

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5   LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVL 42
           L  I+TG WGCGAF G  +LK  IQW+A+S++++  ++
Sbjct: 378 LKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKKMII 415

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
3uek_A	588	Poly(ADP-ribose) glycohydrolase; mammalian PArg, m	8e-29
4fc2_A	521	Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91	3e-27
4epp_A	477	Poly(ADP-ribose) glycohydrolase; marco domain, PAR	1e-26

>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A {Rattus norvegicus} PDB: 3uel_A* Length = 588

 Score =  107 bits (268), Expect = 8e-29
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 2   GKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQN-LDQITQW 60
            ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V Y+TFG   L   +  +  +
Sbjct: 471 PENLSAVATGNWGCGAFGGDARLKALIQLLAAAAAERDVV-YFTFGDSELMRDIYSMHTF 529

Query: 61  ILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL 99
           +   +  V  ++ +++ Y  +     ++ G    L P +
Sbjct: 530 LTERKLNVGKVYRLLLRYYREECRDCSSPGPDTKLYPFI 568

>4fc2_A Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91A {Mus musculus} Length = 521

 Score =  102 bits (256), Expect = 3e-27
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQN-LDQITQWI 61
           ++L  +ATGNWGCGAFGGD  LKA+IQ LAA+ A R  V Y+TFG   L   +  +  ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERDVV-YFTFGDSELMRDIYSMHTFL 473

Query: 62  LSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL 99
              +  V  ++ +++ Y ++     +  G    L P +
Sbjct: 474 TERKLDVGKVYKLLLRYYNEECRNCSTPGPDIKLYPFI 511

>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A* Length = 477

 Score =  101 bits (251), Expect = 1e-26
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 3   KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQN-LDQITQWI 61
             L  I+TG WGCGAF G  +LK  IQW+A+S++++  +   TF  +     + Q+    
Sbjct: 376 DQLKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKKMI-ICTFQDEQTTKQIQQVFDLY 434

Query: 62  LSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL 99
                ++     ++++Y + +      L    +L+   
Sbjct: 435 KQKNASI--FLKLVMDYPNSKYMEDYTL--LEYLIELG 468

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
4a0d_A	531	Poly(ADP-ribose) glycohydrolase; 1.75A {Homo sapie	100.0
3uek_A	588	Poly(ADP-ribose) glycohydrolase; mammalian PArg, m	100.0
4epp_A	477	Poly(ADP-ribose) glycohydrolase; marco domain, PAR	99.96
3sig_A	277	PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1	94.68
2g8g_A	524	Capsid; adeno-associated virus serotype 4, gene th	82.11

>4a0d_A Poly(ADP-ribose) glycohydrolase; 1.75A {Homo sapiens} PDB: 4fc2_A

Probab=100.00  E-value=7.9e-35  Score=247.91  Aligned_cols=100  Identities=34%  Similarity=0.709  Sum_probs=87.6

Q ss_pred             CCceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHhhh
Q 039296            5 LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWILSHEWTVRDLWNMMVEYSSQRL   83 (116)
Q Consensus         5 ~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l-~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~   83 (116)
                      ..+|+|||||||||||||+||+||||||||+||||+ +||||+|+++ +++.++++.++++++|||+||++|.+|+++..
T Consensus       417 ~~~IaTGnWGCGaFgGD~~LK~lIQ~lAAs~agr~l-~Y~tF~d~~l~~~l~~~~~~l~~~~~TVg~Ly~~L~~Y~~~~~  495 (531)
T 4a0d_A          417 LSAVATGNWGCGAFGGDARLKALIQILAAAAAERDV-VYFTFGDSELMRDIYSMHIFLTERKLTVGDVYKLLLRYYNEEC  495 (531)
T ss_dssp             CCCEEEECTTCSTTCCCHHHHHHHHHHHHHHTTCCE-EEECTTCHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHT
T ss_pred             CCceEecCcccccCCCCHHHHHHHHHHHhhcCCCce-EEEeCCCHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999995 6999999887 68999999999999999999999999988764


Q ss_pred             cC----CCcchhHHhhhhhhccCCCC
Q 039296           84 NG----RTNLGFFAWLLPSLTSHNFI  105 (116)
Q Consensus        84 ~~----~~~~~lf~wLl~~ls~~~~~  105 (116)
                      +.    ....+||+||++++++-...
T Consensus       496 ~~~~~~~~~~~lf~~i~~~~~~~~~~  521 (531)
T 4a0d_A          496 RNCSTPGPDIKLYPFIYHAVESCAET  521 (531)
T ss_dssp             TTCCSSSCSSCHHHHHHHHHHTC---
T ss_pred             ccccCCCCcchHHHHHHHHhhccCCC
Confidence            33    34579999999999855433

>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A {Rattus norvegicus} PDB: 3uel_A*

Probab=100.00  E-value=1.4e-34  Score=248.27  Aligned_cols=97  Identities=34%  Similarity=0.717  Sum_probs=88.7

Q ss_pred             CCceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHhhh
Q 039296            5 LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWILSHEWTVRDLWNMMVEYSSQRL   83 (116)
Q Consensus         5 ~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l-~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~   83 (116)
                      ..+|+||||||||||||++||++|||||||+|||| +.||||+|+++ ++|.+|++++++++|||||||++|++|+++..
T Consensus       474 ~~~IaTGnWGCGafggd~~LK~liQ~lAAS~ag~~-l~Y~tF~D~el~~~l~~v~~~L~~k~~TVGdLy~~L~~Y~~~~~  552 (588)
T 3uek_A          474 LSAVATGNWGCGAFGGDARLKALIQLLAAAAAERD-VVYFTFGDSELMRDIYSMHTFLTERKLNVGKVYRLLLRYYREEC  552 (588)
T ss_dssp             CCCEEEECTTCSTTCCCHHHHHHHHHHHHHHTTCC-EEEECTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCceecCCcCccccCCCHHHHHHHHHHHHHhcCCc-eEEeecCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999 56999999988 58999999999999999999999999998753


Q ss_pred             ----cCCCcchhHHhhhhhhccC
Q 039296           84 ----NGRTNLGFFAWLLPSLTSH  102 (116)
Q Consensus        84 ----~~~~~~~lf~wLl~~ls~~  102 (116)
                          +++++.+||+|||+++.+.
T Consensus       553 ~~~~~~~~~~sLfdwLl~~~~~~  575 (588)
T 3uek_A          553 RDCSSPGPDTKLYPFIYHAAESS  575 (588)
T ss_dssp             TTCCSSSCSSCHHHHHHHHHHC-
T ss_pred             hhhccCCCCCcHHHHHHHhccCC
Confidence                3678899999999998854

>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A*

Probab=99.96  E-value=5.4e-30  Score=215.80  Aligned_cols=95  Identities=24%  Similarity=0.520  Sum_probs=85.0

Q ss_pred             CCCceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHhh
Q 039296            4 DLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWILSHEWTVRDLWNMMVEYSSQR   82 (116)
Q Consensus         4 ~~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l-~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~   82 (116)
                      +..+|+|||||||||||||+||+||||||||+|||| |+||||+|+++ ++|++|++.++++++||+  |++|++|+...
T Consensus       377 ~~~~IaTGnWGCGaFgGD~~LK~LIQ~lAAs~agr~-L~Y~tf~d~el~~~l~~~~~~i~~~~~TV~--~~ll~~y~~s~  453 (477)
T 4epp_A          377 QLKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKK-MIICTFQDEQTTKQIQQVFDLYKQKNASIF--LKLVMDYPNSK  453 (477)
T ss_dssp             TCCEEEECSTTSSTTCCCHHHHHHHHHHHHHHTTCE-EEEECSSCHHHHHHHHHHHHHHTTSBHHHH--HHHHHTSTTST
T ss_pred             CCCeeEecCcCcccCCCCHHHHHHHHHHHHHhcCCC-EEEecCCcHHHHHHHHHHHHHHHhcCcEeH--HHHHHhccccc
Confidence            457999999999999999999999999999999999 67999999998 589999999999999998  99999997664


Q ss_pred             hcCCCcchhHHhhhhhhccCC
Q 039296           83 LNGRTNLGFFAWLLPSLTSHN  103 (116)
Q Consensus        83 ~~~~~~~~lf~wLl~~ls~~~  103 (116)
                      .  ....++|+|+++--.+.+
T Consensus       454 ~--~~~~t~~~~~~~~~~~~~  472 (477)
T 4epp_A          454 Y--MEDYTLLEYLIELGKEKA  472 (477)
T ss_dssp             T--TTTCCHHHHHHHHHHHCC
T ss_pred             c--cchhhHHHHHHHhhhhcc
Confidence            3  257889999998766554

>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A

Probab=94.68  E-value=0.016  Score=45.73  Aligned_cols=20  Identities=50%  Similarity=1.187  Sum_probs=17.7

Q ss_pred             ceeccccCCccCCCCHHHHH
Q 039296            7 GIATGNWGCGAFGGDPELKA   26 (116)
Q Consensus         7 ~I~TGnWGCGaFgGD~qLK~   26 (116)
                      .|+-|-||||+|+++|+.-+
T Consensus       214 ~LVLGA~GCGvfgnpp~~VA  233 (277)
T 3sig_A          214 RLVLGAWGCGVFGNDPAQVA  233 (277)
T ss_dssp             EEEECCTTSSTTCCCHHHHH
T ss_pred             EEEECCcccCcCCCCHHHHH
Confidence            58889999999999998755

>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy, icosahedral virus; HET: D5M; 3.20A {Adeno-associated virus - 4}

Probab=82.11  E-value=0.5  Score=40.31  Aligned_cols=20  Identities=35%  Similarity=0.833  Sum_probs=18.8

Q ss_pred             CCCCCceeccccCCcc-CCCC
Q 039296            2 GKDLPGIATGNWGCGA-FGGD   21 (116)
Q Consensus         2 ~~~~~~I~TGnWGCGa-FgGD   21 (116)
                      |.+.+.++||.|=||+ |.||
T Consensus         1 g~~GVG~StG~W~~gt~f~~~   21 (524)
T 2g8g_A            1 GADGVGNASGDWHCDSTWSEG   21 (524)
T ss_dssp             CBCCTTSCSSCCCCCCBCCSS
T ss_pred             CCCccccccccccCCCEECCC
Confidence            7789999999999999 9998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00